RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021865
(306 letters)
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde
dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Length = 183
Score = 140 bits (354), Expect = 9e-42
Identities = 124/176 (70%), Positives = 144/176 (81%), Gaps = 1/176 (0%)
Query: 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT 118
KS ++VRI +LGASGYTGAEIVRLLANHP F IK+MTADRKAG+ GSVFPHLI+QDLP
Sbjct: 1 KSGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPN 60
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPH 178
+VAVKDADFSNVDAVFCCLPHGTTQEIIKGLP+ LKIVDLSADFRLRD++EY EWYG H
Sbjct: 61 LVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSH 120
Query: 179 IAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPL-IQANLIQYRNI 233
AP+LQ+EAVYGLTE+ R +I+NARLVANPG + + L + L + +
Sbjct: 121 RAPELQQEAVYGLTEVLRNEIRNARLVANPGLVKGASGQAVQNLNLMMGLPENTGL 176
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 133 bits (336), Expect = 3e-39
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK 123
+R G++GA+GYTG E+VRLL NHP I +++ AG+ + +FP + ++
Sbjct: 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDP 60
Query: 124 DADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183
+ N D +F LP G + ++++ K +KI+DL ADFR D Y EWYG+ +
Sbjct: 61 EKVSKNCDVLFTALPAGASYDLVRE-LKGVKIIDLGADFRFDDPGVYREWYGKELSGYE- 118
Query: 184 QKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPL-IQANLIQYRNI 233
+ VYGL E+ RE+IKNA++V NPG + + + I L + + +
Sbjct: 119 NIKRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDETKGL 169
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 110 bits (276), Expect = 3e-30
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 7/177 (3%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---RKAGQSIGSVFPHLISQDLPTMVA 121
++GASGY GAE+V + HP+ I +T AG+ I + P L +
Sbjct: 3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQP 62
Query: 122 VKDAD--FSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPH 178
+ D ++VD VF H + ++ ++ + DLS FR+ D + YE++YG H
Sbjct: 63 MSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTH 122
Query: 179 IAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV-PLIQANLIQYRNII 234
P+L ++AVYGL E + + + A L+A PG + + I+ + +++I
Sbjct: 123 QYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAETQSLI 179
>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate
reductase ArgC {Thermotoga maritima [TaxId: 2336]}
Length = 163
Score = 97.6 bits (242), Expect = 2e-25
Identities = 48/89 (53%), Positives = 61/89 (68%)
Query: 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRH 269
CYPTS+ L L P ++ NL+ I++DAKSGVSGAGR K L+SE+ E + Y V +H
Sbjct: 1 CYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKH 60
Query: 270 RHVPEIEQGLTGFASSKVTVSFTPHLMPM 298
RHVPE+EQ L + KV V FTPHL+PM
Sbjct: 61 RHVPEMEQELGKISGKKVNVVFTPHLVPM 89
>d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase
{Rice (Oryza sativa) [TaxId: 4530]}
Length = 165
Score = 94.9 bits (235), Expect = 2e-24
Identities = 70/94 (74%), Positives = 80/94 (85%)
Query: 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRH 269
CYPTSIQLPLVPLI+A LI+ NIIIDAKSGVSGAGRGAKEANLY+EIAEGI++YG+ H
Sbjct: 1 CYPTSIQLPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEANLYTEIAEGIHAYGIKGH 60
Query: 270 RHVPEIEQGLTGFASSKVTVSFTPHLMPMVTVSL 303
RHVPEIEQGL+ A SKVT+SFTP+L+ M
Sbjct: 61 RHVPEIEQGLSEAAESKVTISFTPNLICMKRGMQ 94
>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 144
Score = 83.0 bits (204), Expect = 3e-20
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 24/163 (14%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM 119
+ + + ++GA+G G +V LL + P + L+ + AGQ +G +
Sbjct: 1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESS------LRV 54
Query: 120 VAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHI 179
V DFS+V F ++ + + V + E P +
Sbjct: 55 GDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGAL--------EPSVAPPV 106
Query: 180 APDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPL 222
+ E + L+++P + L+
Sbjct: 107 MVSVNAERL--------ASQAAPFLLSSPAALNAVLLGELLIK 141
>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 154
Score = 79.5 bits (195), Expect = 7e-19
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 22/164 (13%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+ ++GA+G GA+++++L K+ A QD+ +
Sbjct: 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYL---ASARSAGKSLKFKDQDITIEETTET 59
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQ 184
A A+F + + + + +VD ++ FR H
Sbjct: 60 AFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAH------ 113
Query: 185 KEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
+ ++A P S+Q+ L + L+
Sbjct: 114 ------------ALDAHNGIIACPNAAWNSVQI-AETLHERGLV 144
>d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate
reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
Length = 155
Score = 79.5 bits (195), Expect = 9e-19
Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 210 CYPTSIQLPLVPLIQANLIQYRN-IIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR 268
CYPT+ QL L PLI L+ +I+A SGVSGAGR A +N + E+ + YGV
Sbjct: 1 CYPTAAQLSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAISNSFCEV--SLQPYGVFT 58
Query: 269 HRHVPEIEQGLTGFASSKVTVSFTPHLMPM 298
HRH PEI L V FTPHL
Sbjct: 59 HRHQPEIAVHL------GAEVIFTPHLGNF 82
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 147
Score = 63.2 bits (153), Expect = 6e-13
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 35/165 (21%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
R+GL+G G G+ +++ + F + + IG P+ A
Sbjct: 2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFF--STSQIGVPAPNFGKDAGMLHDAFDI 59
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKS---LKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
+DAV C T+++ L ++ +D ++ R
Sbjct: 60 ESLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLR------------------ 101
Query: 182 DLQKEAVYGLTEISREDIKNAR---------LVANPGCYPTSIQL 217
+ KEA+ L ++ + I + A P ++++
Sbjct: 102 -MDKEAIITLDPVNLKQILHGIHHGTKTFVGGAAEPLR--RTLRI 143
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 146
Score = 58.2 bits (140), Expect = 3e-11
Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 24/142 (16%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+G +G G G+ +++ + F + +G P A
Sbjct: 3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFF--STSQLGQAAPSFGGTTGTLQDAFDL 60
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGL---PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
+D + C T EI L +D ++ R++D
Sbjct: 61 EALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKD--------------- 105
Query: 182 DLQKEAVYGLTEISREDIKNAR 203
+A+ L ++++ I +
Sbjct: 106 ----DAIIILDPVNQDVITDGL 123
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 41.6 bits (97), Expect = 3e-05
Identities = 20/160 (12%), Positives = 53/160 (33%), Gaps = 26/160 (16%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI-SQDLPTMV 120
+++++ ++G+ ++++L N Y + M A + + +
Sbjct: 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEG 62
Query: 121 AVKDADFSNVDAVFCCLP---HGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQP 177
+K +F+++D VF H + +++ ++++DL+ Y P
Sbjct: 63 LIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGP--------YCVP 114
Query: 178 HIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217
+ + N +V G I
Sbjct: 115 VVNLEEHLGK------------LNVNMVTYAGN--LDIMT 140
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 32.5 bits (73), Expect = 0.033
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTM 119
+ +R+ + GA G G ++++ G++L A +R+ +GS L +
Sbjct: 2 DANIRVAIAGAGGRMGRQLIQAALALE--GVQLGAALEREGSSLLGSDAGELAGAGKTGV 59
Query: 120 VAVKD--ADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV 156
A + D T + + K +
Sbjct: 60 TVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGM 98
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 32.4 bits (72), Expect = 0.056
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPY 88
+K+ R+ ++G +GY G IV + +
Sbjct: 1 DKKSRVLIVGGTGYIGKRIVNASISLGH 28
>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 212
Score = 31.3 bits (69), Expect = 0.093
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYF 89
R+ L GA+G TG ++ + + P
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTL 28
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 31.5 bits (70), Expect = 0.12
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 61 EKQVRIGLLGASGYTGAEIVRLL--ANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT 118
+++ I ++GA+G GA ++R+ H A + L L
Sbjct: 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLN 60
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIKG 148
V + D F F EI G
Sbjct: 61 NVPLMDTLFEGAHLAFINTTSQAGDEIAIG 90
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 232
Score = 30.9 bits (68), Expect = 0.14
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYF 89
+ +LGASG TG +++ + F
Sbjct: 16 SVFILGASGETGRVLLKEILEQGLF 40
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 144
Score = 30.3 bits (68), Expect = 0.15
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
++ +LGASG G + LL N P +L D + + H I +
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVS-RLTLYDIAHTPGVAADLSH-IETRATVKGYLGP 59
Query: 125 AD----FSNVDAVFCCL--PHGTTQEIIKGLPKSLKIV 156
D V P + IV
Sbjct: 60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 97
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 30.5 bits (67), Expect = 0.23
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
RI L+GA+GY G + + + G R++ S S L+ + +
Sbjct: 5 RILLIGATGYIGRHVAKASLDL---GHPTFLLVRESTASSNSEKAQLLESFKASGANIVH 61
Query: 125 ADFSNVDAVFCCLPH 139
+ ++ + +
Sbjct: 62 GSIDDHASLVEAVKN 76
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 30.2 bits (66), Expect = 0.25
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK 99
+I + GA+G G EI + L ++++ D +
Sbjct: 3 KILITGANGQLGREIQKQLKGK---NVEVIPTDVQ 34
>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 259
Score = 29.8 bits (66), Expect = 0.32
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 1/81 (1%)
Query: 70 GASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSN 129
GAS G + LA G ++ + R + + L +Q V + AD
Sbjct: 13 GASRGFGRALAPQLARLLSPGSVMLVSARSE-SMLRQLKEELGAQQPDLKVVLAAADLGT 71
Query: 130 VDAVFCCLPHGTTQEIIKGLP 150
V L +GL
Sbjct: 72 EAGVQRLLSAVRELPRPEGLQ 92
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 29.6 bits (65), Expect = 0.37
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHL-ISQDLPTMVAVK 123
+I + GA+G TG + G ++ R + + + A
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQA---GYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADV 61
Query: 124 DADFSNVDAVFCCL 137
D + DAV L
Sbjct: 62 DKTVAGQDAVIVLL 75
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum
vulgare), chloroplast [TaxId: 4558]}
Length = 175
Score = 28.8 bits (64), Expect = 0.50
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 51 QVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFG----IKLMTADRKAGQSIGS 106
+ KT+ +K V I + GA+G ++ LA+ FG I L +
Sbjct: 12 LKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALE 71
Query: 107 VFPHLISQDLPTMVAVKDADFSNV----DAVFCCLPHGTTQE 144
+ L ++ D + L +
Sbjct: 72 GVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRG 113
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 28.5 bits (63), Expect = 0.56
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
R+G+LGA G GA +VR +A + L + + P + D T V +
Sbjct: 1 RVGVLGAKGKVGATMVRAVAAAD--DLTLSAE-------LDAGDPLSLLTDGNTEVVI-- 49
Query: 125 ADFSNVDAVFCCLPHGTTQEI 145
DF++ D V L I
Sbjct: 50 -DFTHPDVVMGNLEFLIDNGI 69
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 28.9 bits (63), Expect = 0.64
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 41 GSATLPTKSL---QVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGI 91
G++ +PT + +++ ++G Y +I+ A + I
Sbjct: 8 GASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRI 61
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240
(T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 252
Score = 29.0 bits (63), Expect = 0.69
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPY 88
+ + GASG TG + + L
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSD 28
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 28.0 bits (62), Expect = 0.71
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFG-IKLMTADRKAGQSIGSVFP--HLISQDLPTMVA 121
++ ++GA+G GA +A + + K ++G H I+ D T V
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR 61
Query: 122 VKD-ADFSNVDAVFCCL--PHGTTQEIIKGLPKSLKIV 156
D + D V P Q I + I+
Sbjct: 62 QGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIM 99
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 443
Score = 28.6 bits (64), Expect = 0.91
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 248 AKEAN-LYSEIAEGIYSYGVTRHR 270
AKE L E+ + + Y V H
Sbjct: 264 AKECTALADEVEKALKKYAVCNHP 287
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
{Clostridium perfringens [TaxId: 1502]}
Length = 426
Score = 28.2 bits (63), Expect = 1.2
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 248 AKEAN-LYSEIAEGIYSYGVTRHRHVPEI 275
++A+ L EI I +G E+
Sbjct: 255 KEKADSLREEIDNAIEKHGKVYKEGFGEV 283
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc
finger domain {Escherichia coli [TaxId: 562]}
Length = 41
Score = 25.4 bits (56), Expect = 1.3
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 189 YGLTEISREDIKNARLVANPGC 210
+G E +I RL A P
Sbjct: 1 FGYCESCGVEIGIRRLEARPTA 22
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 145
Score = 27.1 bits (59), Expect = 1.5
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
++ ++GASG G+ LLA P+ ++ R+ + I L + +
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLI-GREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 125 ADFSNVDAVFCC 136
+ + +
Sbjct: 61 IYVESDENLRII 72
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 27.9 bits (60), Expect = 1.9
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217
Q Y + +D + V G + L
Sbjct: 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDL 52
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 26.9 bits (59), Expect = 2.2
Identities = 11/95 (11%), Positives = 23/95 (24%), Gaps = 12/95 (12%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGI---------KLMTADRKAGQSIGSVFPHLISQ 114
V + + G G G + + P + + G I +
Sbjct: 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 115 DLPTMVAVKDAD--FSNVDAVFCCLPHGTTQEIIK 147
+ + + D V P+G +
Sbjct: 61 EESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKP 95
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 27.0 bits (59), Expect = 3.1
Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 33/149 (22%)
Query: 51 QVEDGKTQKSEKQVRIGLLGASGYTGA---EIVRLLANHPYFGIKLMTADRKAGQSIGSV 107
+ K ++ L+ + R++ + +
Sbjct: 205 TFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQ---MAVP-----------CSLL 250
Query: 108 FPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDV 167
D P D + GTTQ+ +K P ++ + L L+
Sbjct: 251 SDPSEVLDTPA------------DGHYRMYSGGTTQQEMKEAPDAIDTLLLQPWQLLKSK 298
Query: 168 SEYEEWYGQPHIAPDLQKEAVYGLTEISR 196
+E + QP + GL
Sbjct: 299 KVVQEMWNQPATEVAI----PLGLAATDE 323
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 154
Score = 26.2 bits (57), Expect = 3.7
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 17/147 (11%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
VR+ + GA+G G ++ +A G +I Q L A
Sbjct: 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQ----------------PVILQLLEIPQA 46
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
+K + ++ C P E + K D + E +
Sbjct: 47 MKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNG 106
Query: 182 DLQKEAVYGLTEISREDIKNARLVANP 208
+ E L E++++D+K +V NP
Sbjct: 107 KIFTEQGRALAEVAKKDVKVL-VVGNP 132
>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 236
Score = 25.9 bits (56), Expect = 5.4
Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 9/83 (10%)
Query: 70 GASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSN 129
G G G+ V+ + + D + + ++ A+
Sbjct: 9 GGRGALGSRCVQAFRAR---NWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGK 65
Query: 130 ------VDAVFCCLPHGTTQEII 146
VDA+ C
Sbjct: 66 LLGDQKVDAILCVAGGWAGGNAK 88
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.3 bits (58), Expect = 5.6
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 175 GQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNII 234
G H++ D K G I E +L N P I+ ++I
Sbjct: 160 GVGHVSVDYGKVLRVGFNGIINE--AKEQLEKNRSIDPDFIKK---------EKFLNSVI 208
Query: 235 IDAKSGVSGAGRGAKEANLYSEIAEGI 261
I ++ ++ R AK+A EIA+
Sbjct: 209 ISCEAAITYVNRYAKKA---KEIADNT 232
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 128
Score = 25.3 bits (55), Expect = 5.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPY 88
+ G++G SG G EI ++ + +
Sbjct: 2 KYGIVGYSGRMGQEIQKVFSEKGH 25
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 168
Score = 25.8 bits (56), Expect = 6.0
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANH 86
S K V + ++GA G G+ + L
Sbjct: 1 STKVVNVAVIGA-GVVGSAFLDQLLAM 26
>d2i6ea1 c.94.1.1 (A:16-287) Hypothetical protein DR0370
{Deinococcus radiodurans [TaxId: 1299]}
Length = 272
Score = 25.8 bits (56), Expect = 7.0
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 126 DFSNVDAVFCCLPHGTTQEIIKGLPKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183
F+NV + L I G+P + ++ D E+ PD
Sbjct: 8 HFTNVAPILDSLELPPGVTAITGVPTQMNAALLSGEVDIANVSAVEFIRHADTLAALPDF 67
Query: 184 ---QKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217
VY + + R VA S+ L
Sbjct: 68 SVAVLGPVYSVNLFHTCPLPELRRVALTSQSAMSVAL 104
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 25.9 bits (55), Expect = 7.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPY 88
+ + GA+G+ + +V L H Y
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGY 36
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 212
Score = 25.4 bits (54), Expect = 8.0
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA 100
R+ LLG +G G + LA G +++ R+
Sbjct: 2 RVALLGGTGNLGKGLALRLATL---GHEIVVGSRRE 34
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 25.6 bits (55), Expect = 8.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPY 88
R+ + G G G+ I R L
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGD 27
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 25.5 bits (55), Expect = 9.2
Identities = 9/57 (15%), Positives = 13/57 (22%)
Query: 126 DFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPD 182
D GT E +K S + L + E+ P
Sbjct: 208 DGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGSYASDLGAKTLEKKCKVPFKTLR 264
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,100,416
Number of extensions: 50297
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 45
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)