Query 021867
Match_columns 306
No_of_seqs 203 out of 1792
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 4.1E-40 8.9E-45 291.5 23.3 274 13-302 4-280 (342)
2 PF00891 Methyltransf_2: O-met 100.0 6.4E-39 1.4E-43 281.0 18.0 202 98-306 3-208 (241)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 1.2E-37 2.6E-42 282.2 23.6 247 28-304 3-261 (306)
4 COG2226 UbiE Methylase involve 99.7 1.5E-15 3.2E-20 130.9 13.1 103 196-303 51-162 (238)
5 PRK06922 hypothetical protein; 99.6 3.6E-15 7.8E-20 143.6 14.3 145 155-304 377-544 (677)
6 PF12847 Methyltransf_18: Meth 99.6 3.2E-15 6.9E-20 115.0 11.2 98 197-297 2-111 (112)
7 PRK15451 tRNA cmo(5)U34 methyl 99.6 7.8E-15 1.7E-19 128.9 13.8 106 195-303 55-170 (247)
8 PF01209 Ubie_methyltran: ubiE 99.6 2.7E-15 5.8E-20 130.3 9.9 105 194-303 45-159 (233)
9 TIGR00740 methyltransferase, p 99.6 6.4E-15 1.4E-19 128.9 11.9 106 195-303 52-167 (239)
10 PLN02233 ubiquinone biosynthes 99.5 9.2E-14 2E-18 123.0 14.0 104 194-302 71-187 (261)
11 PTZ00098 phosphoethanolamine N 99.5 8.7E-14 1.9E-18 123.3 13.8 114 183-302 41-161 (263)
12 PRK14103 trans-aconitate 2-met 99.5 9.7E-14 2.1E-18 122.6 12.2 105 184-297 19-126 (255)
13 PRK11207 tellurite resistance 99.5 1.7E-13 3.8E-18 116.3 13.0 112 184-302 20-139 (197)
14 KOG1540 Ubiquinone biosynthesi 99.5 2E-13 4.3E-18 116.2 13.1 103 195-302 99-219 (296)
15 PF13847 Methyltransf_31: Meth 99.5 1.2E-13 2.6E-18 112.3 11.2 99 196-299 3-112 (152)
16 PF08241 Methyltransf_11: Meth 99.5 1.4E-13 3.1E-18 101.9 9.6 89 201-295 1-95 (95)
17 PRK01683 trans-aconitate 2-met 99.5 4E-13 8.7E-18 118.8 13.9 107 183-296 20-129 (258)
18 smart00138 MeTrc Methyltransfe 99.5 1.3E-12 2.9E-17 115.7 17.1 99 195-296 98-241 (264)
19 PLN02244 tocopherol O-methyltr 99.5 4.1E-13 8.9E-18 123.3 14.2 100 195-300 117-226 (340)
20 TIGR02752 MenG_heptapren 2-hep 99.5 8.5E-13 1.8E-17 114.7 13.0 111 184-301 35-155 (231)
21 TIGR03587 Pse_Me-ase pseudamin 99.5 9.4E-13 2E-17 112.3 12.4 104 194-302 41-147 (204)
22 TIGR00477 tehB tellurite resis 99.4 1.6E-12 3.5E-17 110.1 12.5 110 184-300 20-136 (195)
23 smart00828 PKS_MT Methyltransf 99.4 1.2E-12 2.6E-17 113.2 11.8 98 198-300 1-107 (224)
24 COG4106 Tam Trans-aconitate me 99.4 6.3E-13 1.4E-17 110.5 8.9 107 183-296 19-128 (257)
25 PLN02336 phosphoethanolamine N 99.4 2.7E-12 5.8E-17 123.3 13.9 111 184-302 256-374 (475)
26 PLN03075 nicotianamine synthas 99.4 2E-12 4.4E-17 114.8 11.7 98 195-296 122-232 (296)
27 PF13649 Methyltransf_25: Meth 99.4 6.4E-13 1.4E-17 100.4 7.2 87 200-286 1-99 (101)
28 PF08242 Methyltransf_12: Meth 99.4 6.7E-14 1.5E-18 105.3 1.4 88 201-293 1-99 (99)
29 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.1E-12 4.5E-17 117.6 11.2 101 196-301 113-219 (340)
30 PRK15068 tRNA mo(5)U34 methylt 99.4 5.7E-12 1.2E-16 114.7 13.1 102 196-303 122-232 (322)
31 PRK11036 putative S-adenosyl-L 99.4 4.5E-12 9.8E-17 111.9 12.1 97 195-298 43-150 (255)
32 TIGR00452 methyltransferase, p 99.4 8.4E-12 1.8E-16 112.7 13.2 109 186-302 113-230 (314)
33 PRK08317 hypothetical protein; 99.4 1E-11 2.3E-16 107.9 13.3 107 186-299 11-126 (241)
34 TIGR02072 BioC biotin biosynth 99.4 9.1E-12 2E-16 108.3 12.9 99 196-299 34-137 (240)
35 PRK06202 hypothetical protein; 99.3 2.5E-11 5.5E-16 105.6 14.1 101 195-300 59-169 (232)
36 PLN02396 hexaprenyldihydroxybe 99.3 6.5E-12 1.4E-16 113.9 10.6 96 196-298 131-236 (322)
37 PRK12335 tellurite resistance 99.3 1.5E-11 3.3E-16 110.4 12.9 101 195-300 119-226 (287)
38 PRK00216 ubiE ubiquinone/menaq 99.3 2.4E-11 5.3E-16 105.7 13.6 104 195-303 50-164 (239)
39 PRK05785 hypothetical protein; 99.3 2.6E-11 5.7E-16 105.1 13.3 96 196-302 51-150 (226)
40 PRK11873 arsM arsenite S-adeno 99.3 1.7E-11 3.8E-16 109.2 12.6 104 194-302 75-188 (272)
41 PLN02336 phosphoethanolamine N 99.3 1.8E-11 3.8E-16 117.7 13.5 113 184-303 27-148 (475)
42 COG2230 Cfa Cyclopropane fatty 99.3 2.4E-11 5.1E-16 106.9 13.0 116 183-304 61-183 (283)
43 PF02353 CMAS: Mycolic acid cy 99.3 1.6E-11 3.4E-16 109.1 12.1 114 183-302 51-171 (273)
44 PRK10258 biotin biosynthesis p 99.3 3.4E-11 7.4E-16 106.0 13.7 109 182-299 30-142 (251)
45 PRK15001 SAM-dependent 23S rib 99.3 2.3E-11 4.9E-16 112.3 13.0 109 184-297 218-340 (378)
46 PRK08287 cobalt-precorrin-6Y C 99.3 2E-11 4.3E-16 102.8 11.6 97 194-298 29-132 (187)
47 TIGR02021 BchM-ChlM magnesium 99.3 5.7E-11 1.2E-15 102.5 13.9 127 158-286 17-150 (219)
48 PF05401 NodS: Nodulation prot 99.3 1.8E-11 3.9E-16 101.4 9.8 100 194-298 41-147 (201)
49 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 5E-11 1.1E-15 102.6 12.9 103 195-302 38-148 (223)
50 PF05175 MTS: Methyltransferas 99.3 4.8E-11 1E-15 98.9 11.8 99 196-297 31-140 (170)
51 TIGR02469 CbiT precorrin-6Y C5 99.3 7.9E-11 1.7E-15 91.8 11.7 95 194-296 17-121 (124)
52 PRK00107 gidB 16S rRNA methylt 99.2 1.4E-10 3E-15 97.4 12.7 95 196-299 45-147 (187)
53 PRK11705 cyclopropane fatty ac 99.2 1.5E-10 3.2E-15 107.9 14.1 112 185-302 158-272 (383)
54 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.2E-10 2.6E-15 99.9 12.2 103 195-302 33-157 (213)
55 PRK09489 rsmC 16S ribosomal RN 99.2 1.3E-10 2.8E-15 106.5 12.9 99 197-298 197-304 (342)
56 TIGR00138 gidB 16S rRNA methyl 99.2 5.3E-11 1.1E-15 99.6 9.4 92 197-297 43-142 (181)
57 PF13489 Methyltransf_23: Meth 99.2 7.3E-11 1.6E-15 96.2 8.8 95 194-300 20-118 (161)
58 TIGR03438 probable methyltrans 99.2 1.8E-10 3.9E-15 104.2 11.8 97 196-295 63-175 (301)
59 TIGR00537 hemK_rel_arch HemK-r 99.2 3E-10 6.6E-15 94.9 11.7 102 195-301 18-144 (179)
60 PRK07580 Mg-protoporphyrin IX 99.2 3.5E-10 7.6E-15 98.1 12.3 90 195-286 62-158 (230)
61 COG2227 UbiG 2-polyprenyl-3-me 99.2 8.6E-11 1.9E-15 100.1 8.1 97 196-299 59-163 (243)
62 PF03848 TehB: Tellurite resis 99.2 4.3E-10 9.3E-15 94.1 11.9 108 185-299 21-135 (192)
63 KOG1270 Methyltransferases [Co 99.2 7.3E-11 1.6E-15 101.3 7.1 95 198-299 91-197 (282)
64 PRK00121 trmB tRNA (guanine-N( 99.1 1.7E-10 3.8E-15 98.2 9.2 99 196-297 40-156 (202)
65 COG2813 RsmC 16S RNA G1207 met 99.1 6.7E-10 1.5E-14 98.1 12.2 111 183-298 147-267 (300)
66 PRK13255 thiopurine S-methyltr 99.1 1.9E-09 4.1E-14 92.8 13.7 104 195-303 36-161 (218)
67 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.2E-10 1.1E-14 94.7 10.0 98 196-297 16-132 (194)
68 PRK13944 protein-L-isoaspartat 99.1 1.2E-09 2.5E-14 93.4 11.8 98 186-296 64-172 (205)
69 PRK04266 fibrillarin; Provisio 99.1 1.8E-09 4E-14 93.3 12.6 94 194-295 70-174 (226)
70 TIGR03534 RF_mod_PrmC protein- 99.1 2E-09 4.2E-14 94.6 12.7 98 196-296 87-216 (251)
71 TIGR03533 L3_gln_methyl protei 99.1 1.4E-09 3E-14 97.5 11.6 97 196-295 121-249 (284)
72 PRK11088 rrmA 23S rRNA methylt 99.1 1E-09 2.2E-14 97.8 10.7 91 196-298 85-182 (272)
73 PRK13942 protein-L-isoaspartat 99.1 2.3E-09 5.1E-14 92.0 12.0 100 184-296 66-175 (212)
74 PRK11805 N5-glutamine S-adenos 99.0 2.3E-09 5E-14 97.0 11.4 95 198-295 135-261 (307)
75 TIGR00080 pimt protein-L-isoas 99.0 4.7E-09 1E-13 90.3 12.3 99 185-296 68-176 (215)
76 PRK04457 spermidine synthase; 99.0 1.7E-09 3.7E-14 95.8 9.4 98 195-296 65-176 (262)
77 TIGR00536 hemK_fam HemK family 99.0 5.9E-09 1.3E-13 93.5 12.9 95 198-295 116-242 (284)
78 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.7E-09 8E-14 97.5 11.8 98 195-296 121-234 (390)
79 PRK07402 precorrin-6B methylas 99.0 5.4E-09 1.2E-13 88.6 11.9 103 186-299 32-144 (196)
80 PF13659 Methyltransf_26: Meth 99.0 2.7E-09 5.9E-14 82.4 8.5 95 198-296 2-114 (117)
81 PRK11188 rrmJ 23S rRNA methylt 99.0 6E-09 1.3E-13 89.2 11.2 97 194-298 49-166 (209)
82 PLN02585 magnesium protoporphy 99.0 4.4E-09 9.6E-14 95.2 10.6 88 196-286 144-242 (315)
83 cd02440 AdoMet_MTases S-adenos 99.0 7.4E-09 1.6E-13 76.8 9.8 93 199-296 1-103 (107)
84 PRK09328 N5-glutamine S-adenos 98.9 1.2E-08 2.7E-13 90.9 12.9 98 195-295 107-236 (275)
85 COG2242 CobL Precorrin-6B meth 98.9 8.7E-09 1.9E-13 84.9 10.8 102 187-299 27-137 (187)
86 PF08003 Methyltransf_9: Prote 98.9 2.2E-08 4.7E-13 88.6 11.9 111 185-303 106-225 (315)
87 PRK05134 bifunctional 3-demeth 98.9 2.5E-08 5.5E-13 86.7 12.2 97 195-298 47-152 (233)
88 PRK00377 cbiT cobalt-precorrin 98.9 1.9E-08 4.2E-13 85.4 10.9 94 194-295 38-143 (198)
89 PRK10611 chemotaxis methyltran 98.9 1E-07 2.3E-12 85.0 15.7 97 196-295 115-260 (287)
90 COG4123 Predicted O-methyltran 98.9 1.2E-08 2.6E-13 88.3 9.3 101 194-297 42-170 (248)
91 PF08100 Dimerisation: Dimeris 98.9 1.2E-09 2.7E-14 70.9 2.3 49 30-78 1-51 (51)
92 PRK14966 unknown domain/N5-glu 98.9 2.7E-08 5.8E-13 92.5 12.0 99 196-298 251-381 (423)
93 PRK14968 putative methyltransf 98.9 3.4E-08 7.5E-13 82.7 11.7 99 195-298 22-149 (188)
94 TIGR02081 metW methionine bios 98.9 1.6E-08 3.6E-13 85.5 9.7 87 195-286 12-104 (194)
95 PRK13256 thiopurine S-methyltr 98.9 7E-08 1.5E-12 83.0 13.6 103 195-302 42-168 (226)
96 TIGR01983 UbiG ubiquinone bios 98.8 2.1E-08 4.5E-13 86.6 10.3 96 196-298 45-150 (224)
97 PF01739 CheR: CheR methyltran 98.8 2E-08 4.3E-13 84.8 9.7 98 196-296 31-174 (196)
98 KOG2899 Predicted methyltransf 98.8 2.2E-08 4.7E-13 85.1 9.7 109 186-298 48-209 (288)
99 KOG2361 Predicted methyltransf 98.8 1.4E-08 3.1E-13 86.2 8.5 101 198-301 73-187 (264)
100 PRK00517 prmA ribosomal protei 98.8 3.8E-08 8.3E-13 86.6 11.6 93 195-301 118-217 (250)
101 TIGR00406 prmA ribosomal prote 98.8 3.5E-08 7.6E-13 88.7 11.5 96 195-299 158-261 (288)
102 PRK00312 pcm protein-L-isoaspa 98.8 5.1E-08 1.1E-12 83.7 11.9 91 194-297 76-175 (212)
103 PRK14967 putative methyltransf 98.8 4.8E-08 1E-12 84.5 11.4 102 194-299 34-161 (223)
104 PRK01544 bifunctional N5-gluta 98.8 3.5E-08 7.6E-13 95.2 10.9 96 197-295 139-267 (506)
105 PRK00811 spermidine synthase; 98.8 4E-08 8.7E-13 88.0 10.2 99 195-296 75-190 (283)
106 PF06080 DUF938: Protein of un 98.8 9.6E-08 2.1E-12 80.3 11.5 106 194-302 22-146 (204)
107 TIGR03704 PrmC_rel_meth putati 98.7 7.1E-08 1.5E-12 84.9 10.5 97 197-296 87-215 (251)
108 PF05891 Methyltransf_PK: AdoM 98.7 3.6E-08 7.8E-13 83.3 8.0 103 196-302 55-166 (218)
109 TIGR00438 rrmJ cell division p 98.7 1.3E-07 2.8E-12 79.6 11.1 95 194-296 30-145 (188)
110 KOG4300 Predicted methyltransf 98.7 9.4E-08 2E-12 79.4 9.6 103 196-304 76-189 (252)
111 PHA03411 putative methyltransf 98.7 9.6E-08 2.1E-12 84.0 10.1 97 197-296 65-182 (279)
112 PF05724 TPMT: Thiopurine S-me 98.7 6.2E-08 1.3E-12 83.3 8.8 104 194-302 35-160 (218)
113 PF07021 MetW: Methionine bios 98.7 6.7E-08 1.4E-12 80.2 8.2 87 194-285 11-103 (193)
114 PLN02366 spermidine synthase 98.7 1.2E-07 2.7E-12 85.6 10.5 97 195-295 90-204 (308)
115 PRK13943 protein-L-isoaspartat 98.7 1.6E-07 3.5E-12 85.3 10.8 93 194-297 78-180 (322)
116 PRK01581 speE spermidine synth 98.7 1.1E-07 2.3E-12 86.8 9.6 101 194-297 148-268 (374)
117 PTZ00146 fibrillarin; Provisio 98.7 1.8E-07 4E-12 83.1 10.6 106 182-295 117-235 (293)
118 PLN02781 Probable caffeoyl-CoA 98.6 8.4E-07 1.8E-11 77.3 13.9 96 194-297 66-178 (234)
119 COG1352 CheR Methylase of chem 98.6 5.2E-07 1.1E-11 79.5 12.2 97 196-295 96-239 (268)
120 TIGR00417 speE spermidine synt 98.6 2.4E-07 5.2E-12 82.5 10.1 99 195-296 71-185 (270)
121 KOG3010 Methyltransferase [Gen 98.6 1.4E-07 3E-12 80.3 8.0 96 195-298 32-138 (261)
122 COG2890 HemK Methylase of poly 98.6 3.3E-07 7.1E-12 81.9 10.5 97 199-299 113-239 (280)
123 TIGR01177 conserved hypothetic 98.6 6.4E-07 1.4E-11 82.1 12.3 100 194-298 180-295 (329)
124 PLN02232 ubiquinone biosynthes 98.6 1.9E-07 4E-12 76.6 7.5 74 224-302 1-86 (160)
125 PF01135 PCMT: Protein-L-isoas 98.6 2.7E-07 5.9E-12 78.7 8.6 101 183-296 61-171 (209)
126 smart00650 rADc Ribosomal RNA 98.6 3.6E-07 7.9E-12 75.5 9.1 82 185-271 4-92 (169)
127 KOG1271 Methyltransferases [Ge 98.6 3.7E-07 8E-12 74.5 8.4 99 196-297 67-181 (227)
128 PF12147 Methyltransf_20: Puta 98.5 8.4E-07 1.8E-11 77.8 11.2 100 195-297 134-249 (311)
129 PRK10901 16S rRNA methyltransf 98.5 9.9E-07 2.1E-11 83.7 12.1 110 184-298 234-373 (427)
130 PHA03412 putative methyltransf 98.5 7.1E-07 1.5E-11 76.8 10.0 95 197-295 50-160 (241)
131 TIGR00563 rsmB ribosomal RNA s 98.5 7.2E-07 1.6E-11 84.6 11.1 113 184-301 228-372 (426)
132 COG2518 Pcm Protein-L-isoaspar 98.5 1.5E-06 3.2E-11 73.3 11.3 100 184-298 62-170 (209)
133 PRK14902 16S rRNA methyltransf 98.5 1.1E-06 2.4E-11 83.8 12.1 103 194-299 248-381 (444)
134 PRK03612 spermidine synthase; 98.5 5.2E-07 1.1E-11 87.5 9.8 98 195-296 296-414 (521)
135 PRK14904 16S rRNA methyltransf 98.5 1.3E-06 2.8E-11 83.3 11.9 103 195-300 249-380 (445)
136 COG2519 GCD14 tRNA(1-methylade 98.5 2.8E-06 6E-11 73.3 11.7 106 184-301 84-199 (256)
137 PF03291 Pox_MCEL: mRNA cappin 98.4 1.7E-06 3.7E-11 78.9 10.5 97 196-296 62-185 (331)
138 PF02390 Methyltransf_4: Putat 98.4 2E-06 4.4E-11 72.7 10.1 95 199-297 20-133 (195)
139 PF08123 DOT1: Histone methyla 98.4 1.8E-06 3.8E-11 73.5 9.5 111 185-303 33-164 (205)
140 PLN02672 methionine S-methyltr 98.4 1.4E-06 3E-11 89.8 10.4 66 197-262 119-210 (1082)
141 PRK14901 16S rRNA methyltransf 98.4 2.7E-06 5.8E-11 80.9 11.6 104 194-300 250-387 (434)
142 PF10294 Methyltransf_16: Puta 98.4 2.6E-06 5.7E-11 70.7 10.1 102 194-300 43-159 (173)
143 TIGR00446 nop2p NOL1/NOP2/sun 98.4 3.3E-06 7.2E-11 74.9 11.3 103 195-300 70-202 (264)
144 TIGR00755 ksgA dimethyladenosi 98.4 1.9E-06 4.1E-11 76.0 9.6 91 184-282 19-116 (253)
145 PRK14896 ksgA 16S ribosomal RN 98.4 2.7E-06 5.9E-11 75.2 10.5 84 183-271 18-106 (258)
146 COG2264 PrmA Ribosomal protein 98.4 2.6E-06 5.7E-11 75.8 10.3 104 186-298 152-264 (300)
147 PF01596 Methyltransf_3: O-met 98.4 2.4E-06 5.2E-11 72.7 9.6 98 194-300 43-157 (205)
148 PF06325 PrmA: Ribosomal prote 98.4 2.1E-06 4.6E-11 76.9 9.5 96 194-300 159-262 (295)
149 PRK14903 16S rRNA methyltransf 98.4 3.6E-06 7.8E-11 79.8 11.5 104 194-300 235-369 (431)
150 PRK00274 ksgA 16S ribosomal RN 98.4 1.9E-06 4.2E-11 76.8 8.8 83 184-270 32-119 (272)
151 PF05148 Methyltransf_8: Hypot 98.3 2.7E-06 5.8E-11 71.5 8.2 122 159-299 32-160 (219)
152 KOG1541 Predicted protein carb 98.3 2.5E-06 5.4E-11 71.8 7.8 104 184-295 38-158 (270)
153 COG4122 Predicted O-methyltran 98.3 6.1E-06 1.3E-10 70.5 9.8 100 194-302 57-170 (219)
154 PLN02476 O-methyltransferase 98.2 8E-06 1.7E-10 72.5 9.7 98 194-300 116-230 (278)
155 PLN02823 spermine synthase 98.2 8.8E-06 1.9E-10 74.4 9.8 98 195-296 102-219 (336)
156 PF04672 Methyltransf_19: S-ad 98.2 2.7E-05 5.8E-10 68.3 12.3 103 196-301 68-194 (267)
157 PTZ00338 dimethyladenosine tra 98.2 9.4E-06 2E-10 73.0 9.7 89 184-277 26-122 (294)
158 COG0421 SpeE Spermidine syntha 98.2 9.5E-06 2.1E-10 72.3 9.3 98 195-296 75-189 (282)
159 PF09243 Rsm22: Mitochondrial 98.2 1.5E-05 3.2E-10 71.1 10.3 103 195-302 32-144 (274)
160 KOG1975 mRNA cap methyltransfe 98.2 9.9E-06 2.1E-10 71.9 8.5 97 195-295 116-235 (389)
161 PRK04148 hypothetical protein; 98.1 4.6E-05 1E-09 60.0 11.4 97 185-297 7-109 (134)
162 PRK10909 rsmD 16S rRNA m(2)G96 98.1 1.1E-05 2.4E-10 68.4 8.2 96 196-299 53-160 (199)
163 PLN02589 caffeoyl-CoA O-methyl 98.1 1.7E-05 3.7E-10 69.4 9.5 98 194-300 77-192 (247)
164 PRK13168 rumA 23S rRNA m(5)U19 98.1 1.4E-05 3.1E-10 76.1 9.9 90 195-295 296-398 (443)
165 PF08704 GCD14: tRNA methyltra 98.1 2E-05 4.4E-10 68.8 9.9 104 185-300 31-149 (247)
166 COG4976 Predicted methyltransf 98.1 4.6E-06 1E-10 70.6 5.3 101 195-302 124-230 (287)
167 PF05185 PRMT5: PRMT5 arginine 98.1 1.4E-05 3E-10 75.9 9.0 131 156-294 151-294 (448)
168 COG0220 Predicted S-adenosylme 98.1 5.8E-06 1.3E-10 71.3 5.6 95 198-296 50-163 (227)
169 PF05219 DREV: DREV methyltran 98.1 2.4E-05 5.3E-10 67.9 9.1 91 196-295 94-186 (265)
170 PRK00536 speE spermidine synth 98.1 3.4E-05 7.4E-10 68.0 10.2 89 195-296 71-170 (262)
171 KOG3045 Predicted RNA methylas 98.1 4E-05 8.7E-10 66.1 10.2 121 158-299 139-266 (325)
172 PF01564 Spermine_synth: Sperm 98.1 1.2E-05 2.6E-10 70.6 7.2 100 195-297 75-191 (246)
173 COG3963 Phospholipid N-methylt 98.0 7.6E-05 1.6E-09 60.3 10.8 115 180-299 34-158 (194)
174 KOG1661 Protein-L-isoaspartate 98.0 2.3E-05 5E-10 65.6 8.0 99 186-295 72-191 (237)
175 COG2263 Predicted RNA methylas 98.0 3E-05 6.6E-10 64.0 8.4 69 195-264 44-117 (198)
176 KOG1500 Protein arginine N-met 98.0 4.6E-05 9.9E-10 68.0 8.9 94 197-294 178-279 (517)
177 TIGR03439 methyl_EasF probable 97.9 9E-05 1.9E-09 67.3 10.8 102 196-300 76-201 (319)
178 PRK15128 23S rRNA m(5)C1962 me 97.9 7.4E-05 1.6E-09 70.0 10.3 99 195-297 219-339 (396)
179 PRK11783 rlmL 23S rRNA m(2)G24 97.9 4.4E-05 9.5E-10 76.8 9.4 97 196-296 538-655 (702)
180 KOG1499 Protein arginine N-met 97.9 3.9E-05 8.6E-10 69.1 7.9 96 195-294 59-164 (346)
181 PRK03522 rumB 23S rRNA methylu 97.9 6.8E-05 1.5E-09 68.3 9.4 65 196-262 173-247 (315)
182 PRK00050 16S rRNA m(4)C1402 me 97.8 4.6E-05 9.9E-10 68.3 7.3 77 183-261 8-96 (296)
183 PRK11727 23S rRNA mA1618 methy 97.8 7.2E-05 1.6E-09 67.9 8.3 75 196-270 114-204 (321)
184 KOG2904 Predicted methyltransf 97.8 0.00027 5.8E-09 61.6 11.3 67 195-261 147-228 (328)
185 TIGR00095 RNA methyltransferas 97.7 0.00022 4.8E-09 60.0 9.3 96 196-299 49-160 (189)
186 TIGR00479 rumA 23S rRNA (uraci 97.7 9.9E-05 2.1E-09 70.2 7.7 91 194-295 290-394 (431)
187 PRK01544 bifunctional N5-gluta 97.7 0.00016 3.6E-09 69.9 9.2 98 196-297 347-462 (506)
188 PF03141 Methyltransf_29: Puta 97.7 3.7E-05 8E-10 72.4 4.5 99 195-301 116-223 (506)
189 KOG1331 Predicted methyltransf 97.7 6.4E-05 1.4E-09 65.9 5.0 95 195-297 44-143 (293)
190 TIGR00478 tly hemolysin TlyA f 97.6 0.0004 8.7E-09 60.1 9.6 90 184-286 64-164 (228)
191 PF09339 HTH_IclR: IclR helix- 97.6 3.5E-05 7.6E-10 50.5 2.1 46 38-86 6-51 (52)
192 TIGR02085 meth_trns_rumB 23S r 97.6 0.00034 7.3E-09 65.3 8.9 65 196-262 233-307 (374)
193 KOG0820 Ribosomal RNA adenine 97.5 0.00043 9.2E-09 60.4 8.3 75 183-261 47-129 (315)
194 PF02527 GidB: rRNA small subu 97.5 0.00033 7.2E-09 58.6 7.0 89 199-296 51-147 (184)
195 COG4262 Predicted spermidine s 97.5 0.00029 6.2E-09 63.8 6.8 93 195-296 288-406 (508)
196 COG5459 Predicted rRNA methyla 97.5 9.7E-05 2.1E-09 66.4 3.5 102 197-301 114-229 (484)
197 KOG3115 Methyltransferase-like 97.4 0.00038 8.2E-09 58.1 6.0 100 197-299 61-185 (249)
198 PF09445 Methyltransf_15: RNA 97.4 0.00013 2.8E-09 59.5 2.9 64 198-263 1-77 (163)
199 PF13679 Methyltransf_32: Meth 97.4 0.00079 1.7E-08 53.8 7.4 85 194-282 23-122 (141)
200 COG0030 KsgA Dimethyladenosine 97.4 0.0013 2.9E-08 57.6 9.2 93 183-279 19-118 (259)
201 PRK04338 N(2),N(2)-dimethylgua 97.3 0.00099 2.2E-08 62.2 8.8 91 197-296 58-157 (382)
202 PF11312 DUF3115: Protein of u 97.3 0.0021 4.6E-08 57.5 10.2 99 197-298 87-243 (315)
203 PF00398 RrnaAD: Ribosomal RNA 97.3 0.0012 2.6E-08 58.6 8.2 93 182-282 18-119 (262)
204 KOG2940 Predicted methyltransf 97.3 0.00061 1.3E-08 58.0 5.9 94 195-294 71-171 (325)
205 COG0357 GidB Predicted S-adeno 97.2 0.0013 2.9E-08 56.1 7.8 69 197-265 68-145 (215)
206 COG0293 FtsJ 23S rRNA methylas 97.2 0.0018 3.8E-08 54.8 8.2 107 183-298 33-160 (205)
207 PF01170 UPF0020: Putative RNA 97.2 0.0029 6.3E-08 52.7 9.4 93 194-286 26-143 (179)
208 PF12840 HTH_20: Helix-turn-he 97.2 0.00027 5.9E-09 47.9 2.6 55 29-87 4-58 (61)
209 PF11968 DUF3321: Putative met 97.2 0.00084 1.8E-08 56.9 5.9 86 197-297 52-149 (219)
210 PF02475 Met_10: Met-10+ like- 97.1 0.00081 1.8E-08 57.0 5.5 91 194-293 99-198 (200)
211 smart00346 HTH_ICLR helix_turn 97.1 0.00058 1.3E-08 50.0 4.0 58 38-107 8-65 (91)
212 PF03059 NAS: Nicotianamine sy 97.1 0.0032 6.9E-08 55.9 9.0 97 196-296 120-229 (276)
213 TIGR01444 fkbM_fam methyltrans 97.1 0.002 4.3E-08 51.2 7.1 53 199-251 1-59 (143)
214 PF04816 DUF633: Family of unk 97.1 0.0022 4.9E-08 54.5 7.7 64 200-263 1-74 (205)
215 COG4076 Predicted RNA methylas 97.1 0.0015 3.2E-08 54.0 6.1 92 198-294 34-132 (252)
216 PF01728 FtsJ: FtsJ-like methy 97.0 0.00069 1.5E-08 56.4 4.2 105 184-296 10-138 (181)
217 smart00550 Zalpha Z-DNA-bindin 97.0 0.0011 2.5E-08 45.9 4.4 60 35-105 6-66 (68)
218 COG0500 SmtA SAM-dependent met 97.0 0.009 2E-07 46.7 10.4 96 200-302 52-160 (257)
219 PF01022 HTH_5: Bacterial regu 96.9 0.00061 1.3E-08 43.6 2.1 44 37-85 4-47 (47)
220 PRK10141 DNA-binding transcrip 96.9 0.0012 2.5E-08 50.9 3.9 57 27-87 8-64 (117)
221 PRK05031 tRNA (uracil-5-)-meth 96.9 0.0013 2.8E-08 61.1 4.9 52 198-251 208-265 (362)
222 KOG3191 Predicted N6-DNA-methy 96.8 0.0089 1.9E-07 49.2 8.7 99 197-298 44-169 (209)
223 PRK11933 yebU rRNA (cytosine-C 96.8 0.011 2.5E-07 56.5 10.9 99 195-296 112-241 (470)
224 PRK11760 putative 23S rRNA C24 96.7 0.017 3.6E-07 52.6 10.6 99 194-303 209-310 (357)
225 TIGR02143 trmA_only tRNA (urac 96.7 0.0028 6E-08 58.7 5.7 52 198-251 199-256 (353)
226 PRK11783 rlmL 23S rRNA m(2)G24 96.7 0.018 3.9E-07 58.2 11.6 111 183-297 178-347 (702)
227 COG1414 IclR Transcriptional r 96.7 0.0018 4E-08 56.8 3.9 59 38-108 7-65 (246)
228 PF02384 N6_Mtase: N-6 DNA Met 96.7 0.0099 2.1E-07 53.9 8.8 99 194-296 44-182 (311)
229 PRK11569 transcriptional repre 96.7 0.0021 4.5E-08 57.4 4.2 60 38-109 31-90 (274)
230 KOG4589 Cell division protein 96.6 0.012 2.5E-07 48.8 8.0 100 187-295 61-182 (232)
231 KOG3420 Predicted RNA methylas 96.6 0.004 8.6E-08 49.3 5.1 69 195-265 47-124 (185)
232 PF02082 Rrf2: Transcriptional 96.6 0.007 1.5E-07 43.7 6.1 49 49-108 24-72 (83)
233 PRK10163 DNA-binding transcrip 96.6 0.0024 5.1E-08 56.9 4.1 59 38-108 28-86 (271)
234 TIGR02431 pcaR_pcaU beta-ketoa 96.6 0.0024 5.3E-08 56.0 4.0 58 38-109 12-69 (248)
235 KOG1269 SAM-dependent methyltr 96.5 0.0039 8.5E-08 57.6 5.0 100 196-301 110-219 (364)
236 PF13578 Methyltransf_24: Meth 96.5 0.0014 3E-08 49.5 1.7 91 201-297 1-105 (106)
237 PRK09834 DNA-binding transcrip 96.5 0.0033 7.2E-08 55.7 4.2 61 38-110 14-74 (263)
238 COG3897 Predicted methyltransf 96.4 0.022 4.7E-07 47.6 8.3 101 194-300 77-182 (218)
239 KOG1663 O-methyltransferase [S 96.3 0.021 4.7E-07 48.8 8.2 98 194-300 71-185 (237)
240 PRK15090 DNA-binding transcrip 96.3 0.0045 9.7E-08 54.7 4.3 59 38-109 17-75 (257)
241 PHA00738 putative HTH transcri 96.3 0.0052 1.1E-07 46.0 3.6 50 35-88 12-61 (108)
242 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.2 0.0056 1.2E-07 53.8 4.3 99 196-299 56-201 (256)
243 cd00092 HTH_CRP helix_turn_hel 96.2 0.025 5.5E-07 38.5 6.8 44 49-105 24-67 (67)
244 TIGR00006 S-adenosyl-methyltra 96.2 0.02 4.3E-07 51.6 7.8 67 183-251 9-80 (305)
245 PF01978 TrmB: Sugar-specific 96.2 0.0018 3.8E-08 44.8 0.8 47 37-87 10-56 (68)
246 PF13412 HTH_24: Winged helix- 96.2 0.0043 9.3E-08 39.7 2.6 44 37-84 5-48 (48)
247 PF07091 FmrO: Ribosomal RNA m 96.2 0.017 3.7E-07 50.2 7.0 100 195-299 104-210 (251)
248 PRK10857 DNA-binding transcrip 96.1 0.015 3.3E-07 47.6 6.2 64 30-108 9-72 (164)
249 TIGR00027 mthyl_TIGR00027 meth 96.1 0.043 9.4E-07 48.5 9.1 102 195-301 80-200 (260)
250 PF13463 HTH_27: Winged helix 96.0 0.0064 1.4E-07 41.7 3.0 53 48-107 16-68 (68)
251 smart00419 HTH_CRP helix_turn_ 96.0 0.015 3.3E-07 36.7 4.5 35 49-86 7-41 (48)
252 PF03602 Cons_hypoth95: Conser 96.0 0.017 3.6E-07 48.4 5.9 99 196-301 42-156 (183)
253 KOG2915 tRNA(1-methyladenosine 96.0 0.078 1.7E-06 46.6 10.0 106 184-300 95-213 (314)
254 TIGR02987 met_A_Alw26 type II 96.0 0.04 8.6E-07 53.9 9.2 67 196-262 31-119 (524)
255 COG4301 Uncharacterized conser 95.8 0.07 1.5E-06 46.2 8.7 103 195-300 77-197 (321)
256 PF01795 Methyltransf_5: MraW 95.8 0.029 6.3E-07 50.6 6.8 67 183-251 9-80 (310)
257 COG2384 Predicted SAM-dependen 95.8 0.099 2.2E-06 44.5 9.5 103 195-304 15-148 (226)
258 TIGR02010 IscR iron-sulfur clu 95.7 0.034 7.5E-07 44.0 6.1 50 49-109 24-73 (135)
259 PF14947 HTH_45: Winged helix- 95.5 0.017 3.8E-07 41.0 3.5 56 40-111 11-66 (77)
260 COG2520 Predicted methyltransf 95.5 0.066 1.4E-06 49.0 8.0 99 195-303 187-295 (341)
261 PF04989 CmcI: Cephalosporin h 95.4 0.087 1.9E-06 44.7 8.0 101 195-301 31-151 (206)
262 COG2521 Predicted archaeal met 95.4 0.025 5.3E-07 48.6 4.6 93 194-295 132-243 (287)
263 TIGR00308 TRM1 tRNA(guanine-26 95.4 0.097 2.1E-06 48.8 9.0 90 198-296 46-146 (374)
264 PF04967 HTH_10: HTH DNA bindi 95.3 0.038 8.2E-07 36.1 4.4 43 28-77 5-47 (53)
265 KOG2730 Methylase [General fun 95.3 0.02 4.3E-07 48.7 3.8 54 196-251 94-154 (263)
266 COG0116 Predicted N6-adenine-s 95.3 0.23 4.9E-06 46.0 10.9 100 194-296 189-343 (381)
267 PF12802 MarR_2: MarR family; 95.3 0.013 2.9E-07 39.3 2.3 47 38-87 8-55 (62)
268 KOG1709 Guanidinoacetate methy 95.3 0.18 3.8E-06 42.9 9.2 98 195-297 100-206 (271)
269 KOG4058 Uncharacterized conser 95.2 0.071 1.5E-06 42.5 6.3 99 195-302 71-177 (199)
270 TIGR00738 rrf2_super rrf2 fami 95.2 0.034 7.4E-07 43.6 4.6 50 49-109 24-73 (132)
271 PF13601 HTH_34: Winged helix 95.1 0.011 2.3E-07 42.4 1.5 67 36-109 1-67 (80)
272 KOG3201 Uncharacterized conser 95.1 0.011 2.4E-07 47.7 1.7 98 196-298 29-141 (201)
273 PF04703 FaeA: FaeA-like prote 95.1 0.015 3.3E-07 39.3 2.1 45 40-87 5-49 (62)
274 PF08461 HTH_12: Ribonuclease 95.0 0.027 5.8E-07 38.7 3.1 59 40-108 3-63 (66)
275 COG4798 Predicted methyltransf 95.0 0.11 2.4E-06 43.4 7.1 105 194-302 46-171 (238)
276 TIGR02337 HpaR homoprotocatech 94.9 0.087 1.9E-06 40.5 6.2 68 36-111 29-96 (118)
277 PRK03902 manganese transport t 94.8 0.048 1E-06 43.5 4.6 51 48-111 20-70 (142)
278 PF09012 FeoC: FeoC like trans 94.8 0.018 3.9E-07 39.9 1.8 45 40-88 5-49 (69)
279 KOG3924 Putative protein methy 94.7 0.12 2.6E-06 47.7 7.3 103 194-302 190-313 (419)
280 PF07942 N2227: N2227-like pro 94.7 0.42 9.2E-06 42.4 10.5 94 196-296 56-201 (270)
281 COG3355 Predicted transcriptio 94.7 0.034 7.4E-07 43.2 3.2 48 38-88 30-77 (126)
282 COG1092 Predicted SAM-dependen 94.6 0.12 2.5E-06 48.4 7.1 99 196-298 217-337 (393)
283 COG1959 Predicted transcriptio 94.6 0.043 9.3E-07 44.3 3.7 60 49-125 24-83 (150)
284 PF01269 Fibrillarin: Fibrilla 94.6 0.44 9.5E-06 40.9 9.9 106 183-296 59-177 (229)
285 PF01047 MarR: MarR family; I 94.5 0.021 4.6E-07 38.0 1.5 45 39-87 7-51 (59)
286 smart00347 HTH_MARR helix_turn 94.4 0.057 1.2E-06 39.7 3.9 67 37-111 12-78 (101)
287 TIGR02944 suf_reg_Xantho FeS a 94.4 0.061 1.3E-06 42.2 4.2 37 48-87 23-59 (130)
288 COG3315 O-Methyltransferase in 94.4 0.23 5E-06 44.8 8.4 97 195-296 91-208 (297)
289 PF07757 AdoMet_MTase: Predict 94.3 0.055 1.2E-06 40.7 3.5 32 195-228 57-88 (112)
290 KOG2793 Putative N2,N2-dimethy 94.3 0.43 9.3E-06 41.7 9.6 95 196-296 86-198 (248)
291 PF08220 HTH_DeoR: DeoR-like h 94.2 0.061 1.3E-06 35.8 3.3 44 40-87 5-48 (57)
292 PLN02668 indole-3-acetate carb 94.1 1 2.2E-05 42.1 12.2 103 196-301 63-241 (386)
293 TIGR02702 SufR_cyano iron-sulf 94.0 0.07 1.5E-06 45.3 4.2 68 38-111 4-71 (203)
294 PRK03573 transcriptional regul 94.0 0.44 9.4E-06 37.9 8.6 65 40-111 36-100 (144)
295 smart00420 HTH_DEOR helix_turn 94.0 0.08 1.7E-06 33.9 3.5 43 41-87 6-48 (53)
296 COG2265 TrmA SAM-dependent met 94.0 0.13 2.8E-06 48.9 6.2 66 194-261 291-368 (432)
297 KOG1562 Spermidine synthase [A 94.0 0.15 3.2E-06 45.4 6.1 100 194-299 119-238 (337)
298 TIGR00122 birA_repr_reg BirA b 94.0 0.081 1.7E-06 36.5 3.7 45 38-87 3-47 (69)
299 COG0275 Predicted S-adenosylme 93.9 0.25 5.4E-06 44.2 7.5 68 182-251 11-84 (314)
300 PRK11050 manganese transport r 93.9 0.089 1.9E-06 42.6 4.4 58 40-111 42-99 (152)
301 PF08279 HTH_11: HTH domain; 93.9 0.08 1.7E-06 34.6 3.4 44 40-86 5-48 (55)
302 COG1041 Predicted DNA modifica 93.9 0.82 1.8E-05 41.9 10.8 100 194-298 195-311 (347)
303 COG2345 Predicted transcriptio 93.8 0.064 1.4E-06 45.8 3.5 62 40-111 16-81 (218)
304 COG0742 N6-adenine-specific me 93.8 0.42 9.1E-06 39.9 8.2 99 196-299 43-155 (187)
305 COG4190 Predicted transcriptio 93.7 0.085 1.8E-06 40.9 3.6 59 25-87 54-112 (144)
306 PF04072 LCM: Leucine carboxyl 93.7 0.26 5.6E-06 41.1 6.9 87 195-281 77-183 (183)
307 smart00418 HTH_ARSR helix_turn 93.7 0.13 2.8E-06 34.1 4.3 42 41-87 3-44 (66)
308 cd07377 WHTH_GntR Winged helix 93.7 0.29 6.4E-06 32.8 6.0 34 51-87 26-59 (66)
309 COG4189 Predicted transcriptio 93.6 0.09 1.9E-06 44.9 4.0 57 27-87 15-71 (308)
310 PRK11512 DNA-binding transcrip 93.6 0.1 2.2E-06 41.7 4.2 67 37-111 42-108 (144)
311 PRK06474 hypothetical protein; 93.6 0.081 1.8E-06 44.0 3.7 56 29-87 5-61 (178)
312 PRK11920 rirA iron-responsive 93.6 0.13 2.9E-06 41.6 4.8 60 49-125 23-82 (153)
313 PF10672 Methyltrans_SAM: S-ad 93.5 0.19 4.2E-06 45.0 6.1 99 195-297 122-238 (286)
314 TIGR01884 cas_HTH CRISPR locus 93.5 0.095 2.1E-06 44.5 4.0 58 37-106 145-202 (203)
315 smart00345 HTH_GNTR helix_turn 93.5 0.2 4.3E-06 32.9 4.8 36 49-87 18-54 (60)
316 COG1321 TroR Mn-dependent tran 93.4 0.13 2.8E-06 41.7 4.5 51 48-111 22-72 (154)
317 PRK11014 transcriptional repre 93.4 0.16 3.4E-06 40.5 5.0 62 30-106 9-70 (141)
318 PF01726 LexA_DNA_bind: LexA D 93.4 0.073 1.6E-06 36.5 2.6 39 47-87 22-60 (65)
319 cd07153 Fur_like Ferric uptake 93.4 0.087 1.9E-06 40.3 3.4 51 37-87 3-55 (116)
320 PF01638 HxlR: HxlR-like helix 93.3 0.081 1.8E-06 38.7 2.9 63 40-111 10-73 (90)
321 KOG3987 Uncharacterized conser 93.2 0.056 1.2E-06 45.6 2.1 88 195-295 111-205 (288)
322 PF05971 Methyltransf_10: Prot 93.2 0.41 9E-06 43.0 7.7 75 196-271 102-193 (299)
323 PRK06266 transcription initiat 93.2 0.16 3.5E-06 42.2 4.8 46 38-87 25-70 (178)
324 PF00325 Crp: Bacterial regula 93.2 0.13 2.9E-06 29.8 3.0 31 50-83 2-32 (32)
325 smart00529 HTH_DTXR Helix-turn 92.9 0.2 4.3E-06 36.8 4.6 46 53-111 2-47 (96)
326 PF03141 Methyltransf_29: Puta 92.9 0.32 6.9E-06 46.5 6.8 96 194-299 363-469 (506)
327 COG4742 Predicted transcriptio 92.8 0.15 3.1E-06 44.8 4.2 66 31-112 9-74 (260)
328 cd00090 HTH_ARSR Arsenical Res 92.8 0.16 3.4E-06 34.9 3.7 45 38-87 10-54 (78)
329 PF05958 tRNA_U5-meth_tr: tRNA 92.7 0.16 3.5E-06 47.0 4.5 49 199-249 199-253 (352)
330 PF01325 Fe_dep_repress: Iron 92.6 0.23 4.9E-06 33.4 4.0 37 48-87 20-56 (60)
331 COG1889 NOP1 Fibrillarin-like 92.5 1.6 3.4E-05 36.9 9.6 105 183-295 62-178 (231)
332 COG1189 Predicted rRNA methyla 92.3 0.97 2.1E-05 39.1 8.4 93 186-286 70-170 (245)
333 TIGR01889 Staph_reg_Sar staphy 92.2 0.25 5.4E-06 37.5 4.4 53 49-111 42-97 (109)
334 smart00344 HTH_ASNC helix_turn 92.2 0.14 3E-06 38.6 2.9 47 36-86 4-50 (108)
335 TIGR01610 phage_O_Nterm phage 92.1 0.32 7E-06 35.9 4.7 44 49-104 46-89 (95)
336 COG0144 Sun tRNA and rRNA cyto 92.1 2.2 4.8E-05 39.5 11.3 102 194-298 154-289 (355)
337 PF07381 DUF1495: Winged helix 91.5 0.29 6.3E-06 35.7 3.7 68 34-111 8-87 (90)
338 KOG2352 Predicted spermine/spe 91.3 1.7 3.6E-05 41.5 9.5 100 199-303 51-169 (482)
339 PF06163 DUF977: Bacterial pro 90.8 0.34 7.4E-06 37.4 3.8 50 34-87 11-60 (127)
340 COG4627 Uncharacterized protei 90.7 0.11 2.5E-06 41.7 1.0 52 242-296 31-85 (185)
341 PF03444 HrcA_DNA-bdg: Winged 90.5 0.54 1.2E-05 33.2 4.2 49 48-108 21-70 (78)
342 TIGR00373 conserved hypothetic 90.5 0.3 6.4E-06 39.8 3.4 46 38-87 17-62 (158)
343 PRK10870 transcriptional repre 90.4 0.72 1.6E-05 38.2 5.7 67 38-111 58-125 (176)
344 PRK10742 putative methyltransf 90.3 0.84 1.8E-05 39.9 6.2 107 184-299 76-221 (250)
345 KOG2798 Putative trehalase [Ca 90.2 2.3 5.1E-05 38.3 8.9 98 197-299 151-298 (369)
346 PF03492 Methyltransf_7: SAM d 90.1 2.7 5.9E-05 38.6 9.7 106 194-302 14-188 (334)
347 PF06859 Bin3: Bicoid-interact 89.8 0.23 5E-06 37.6 2.0 39 256-298 2-44 (110)
348 KOG1501 Arginine N-methyltrans 89.7 0.78 1.7E-05 43.1 5.7 91 195-286 65-166 (636)
349 PRK15431 ferrous iron transpor 89.6 0.51 1.1E-05 33.3 3.5 42 42-87 9-50 (78)
350 PRK14165 winged helix-turn-hel 89.6 0.83 1.8E-05 39.2 5.6 53 49-111 20-72 (217)
351 PF04182 B-block_TFIIIC: B-blo 89.3 0.33 7.2E-06 34.1 2.5 49 36-87 3-52 (75)
352 PF01861 DUF43: Protein of unk 89.3 5.8 0.00012 34.5 10.4 87 196-286 44-140 (243)
353 COG3432 Predicted transcriptio 89.1 0.22 4.8E-06 36.6 1.5 61 41-111 21-82 (95)
354 KOG2187 tRNA uracil-5-methyltr 88.9 0.69 1.5E-05 44.3 4.9 54 194-249 381-440 (534)
355 PF13545 HTH_Crp_2: Crp-like h 88.9 0.83 1.8E-05 31.8 4.3 51 31-87 7-62 (76)
356 PF00392 GntR: Bacterial regul 88.7 1.2 2.6E-05 30.0 4.9 50 31-87 8-58 (64)
357 KOG2918 Carboxymethyl transfer 88.6 2.7 5.9E-05 37.8 8.1 107 194-304 85-233 (335)
358 KOG0822 Protein kinase inhibit 88.6 3.1 6.7E-05 40.2 8.9 119 157-286 334-470 (649)
359 PHA02943 hypothetical protein; 88.5 0.67 1.5E-05 37.0 3.9 44 39-87 15-58 (165)
360 COG2512 Predicted membrane-ass 88.5 0.35 7.6E-06 42.6 2.6 48 38-88 198-245 (258)
361 COG1497 Predicted transcriptio 88.5 0.39 8.5E-06 41.3 2.7 62 49-123 24-85 (260)
362 PF01189 Nol1_Nop2_Fmu: NOL1/N 88.5 1.9 4.2E-05 38.6 7.4 100 194-296 83-218 (283)
363 PF11899 DUF3419: Protein of u 88.3 1.4 3E-05 41.3 6.5 64 236-302 271-339 (380)
364 PF14394 DUF4423: Domain of un 88.1 0.84 1.8E-05 37.7 4.4 46 51-109 40-87 (171)
365 PRK11169 leucine-responsive tr 87.7 0.61 1.3E-05 38.1 3.4 49 34-86 13-61 (164)
366 PF12324 HTH_15: Helix-turn-he 87.7 0.39 8.5E-06 33.8 1.9 34 40-77 29-62 (77)
367 PHA01634 hypothetical protein 87.4 3.4 7.3E-05 32.3 6.9 41 196-237 28-69 (156)
368 PRK04172 pheS phenylalanyl-tRN 87.2 0.59 1.3E-05 45.3 3.5 65 37-113 8-72 (489)
369 COG3413 Predicted DNA binding 87.1 1 2.2E-05 38.5 4.6 43 27-76 159-201 (215)
370 COG5631 Predicted transcriptio 87.1 1.6 3.5E-05 35.2 5.2 78 23-109 64-148 (199)
371 PRK11179 DNA-binding transcrip 87.0 0.64 1.4E-05 37.5 3.1 47 36-86 10-56 (153)
372 PRK09424 pntA NAD(P) transhydr 87.0 4.3 9.4E-05 39.5 9.2 96 196-297 164-285 (509)
373 PF13730 HTH_36: Helix-turn-he 86.9 0.86 1.9E-05 29.6 3.1 29 52-83 27-55 (55)
374 PRK04214 rbn ribonuclease BN/u 86.8 1 2.2E-05 42.7 4.8 46 48-106 308-353 (412)
375 COG1733 Predicted transcriptio 86.5 3.5 7.7E-05 31.8 6.9 79 15-111 12-91 (120)
376 COG1378 Predicted transcriptio 86.3 0.95 2.1E-05 39.7 4.0 51 49-110 29-79 (247)
377 PF03514 GRAS: GRAS domain fam 86.2 3.2 6.9E-05 38.8 7.7 111 184-301 100-247 (374)
378 PF11599 AviRa: RRNA methyltra 86.1 3.9 8.4E-05 35.0 7.3 100 195-297 50-214 (246)
379 PF02319 E2F_TDP: E2F/DP famil 86.1 0.64 1.4E-05 32.3 2.3 38 49-87 23-63 (71)
380 cd08283 FDH_like_1 Glutathione 86.0 4.9 0.00011 37.5 9.0 100 194-298 182-307 (386)
381 PRK05638 threonine synthase; V 85.7 1 2.2E-05 43.1 4.2 53 49-110 383-437 (442)
382 PF05732 RepL: Firmicute plasm 85.5 1.2 2.7E-05 36.5 4.1 44 51-107 76-119 (165)
383 COG1510 Predicted transcriptio 85.4 0.82 1.8E-05 37.4 2.9 37 48-87 39-75 (177)
384 PF12793 SgrR_N: Sugar transpo 85.3 1.4 3.1E-05 33.8 4.1 36 49-87 18-53 (115)
385 PRK13777 transcriptional regul 85.3 1.5 3.2E-05 36.7 4.5 66 38-111 48-113 (185)
386 COG1522 Lrp Transcriptional re 85.1 0.91 2E-05 36.3 3.1 48 36-87 9-56 (154)
387 KOG2539 Mitochondrial/chloropl 85.1 0.97 2.1E-05 42.8 3.6 101 196-299 200-317 (491)
388 COG4565 CitB Response regulato 84.9 1 2.2E-05 38.3 3.3 37 48-87 171-207 (224)
389 PF10007 DUF2250: Uncharacteri 84.8 1.1 2.5E-05 32.8 3.2 47 37-87 9-55 (92)
390 PRK13509 transcriptional repre 84.3 1.2 2.7E-05 39.1 3.8 46 38-87 8-53 (251)
391 PF01475 FUR: Ferric uptake re 84.0 0.7 1.5E-05 35.5 1.9 55 34-88 7-63 (120)
392 PF02002 TFIIE_alpha: TFIIE al 83.8 0.66 1.4E-05 34.8 1.7 44 40-87 18-61 (105)
393 TIGR00498 lexA SOS regulatory 83.7 1.7 3.6E-05 36.6 4.3 37 48-87 23-60 (199)
394 COG1063 Tdh Threonine dehydrog 83.7 5.9 0.00013 36.6 8.2 94 198-302 170-274 (350)
395 PF05711 TylF: Macrocin-O-meth 83.5 1.3 2.7E-05 38.9 3.5 101 196-300 74-215 (248)
396 PF08784 RPA_C: Replication pr 83.5 0.86 1.9E-05 34.0 2.1 48 37-87 49-99 (102)
397 PF10354 DUF2431: Domain of un 83.5 6.7 0.00015 32.1 7.6 91 203-296 3-124 (166)
398 PF06962 rRNA_methylase: Putat 83.4 4.1 8.9E-05 32.4 6.0 74 222-300 1-95 (140)
399 PF02636 Methyltransf_28: Puta 83.0 4.8 0.00011 35.2 7.1 33 197-229 19-59 (252)
400 PF07789 DUF1627: Protein of u 82.8 2.5 5.3E-05 33.7 4.4 37 49-88 5-41 (155)
401 PLN02853 Probable phenylalanyl 82.5 1.5 3.2E-05 42.2 3.7 69 35-115 3-73 (492)
402 PRK10906 DNA-binding transcrip 82.4 1.3 2.7E-05 39.1 3.1 47 37-87 7-53 (252)
403 KOG1099 SAM-dependent methyltr 82.2 2.4 5.3E-05 36.5 4.5 94 193-294 38-160 (294)
404 PRK11639 zinc uptake transcrip 82.0 2.2 4.8E-05 35.1 4.2 54 34-87 25-80 (169)
405 PRK09775 putative DNA-binding 81.8 1.4 3.1E-05 42.0 3.4 42 40-88 5-46 (442)
406 PF05206 TRM13: Methyltransfer 81.7 3.6 7.8E-05 36.4 5.6 36 194-229 16-56 (259)
407 TIGR02147 Fsuc_second hypothet 81.2 2.4 5.1E-05 37.8 4.4 48 49-107 136-183 (271)
408 PRK09802 DNA-binding transcrip 80.8 1.7 3.7E-05 38.7 3.3 47 37-87 19-65 (269)
409 COG5379 BtaA S-adenosylmethion 80.6 3.1 6.6E-05 37.3 4.7 65 229-296 296-365 (414)
410 PRK10411 DNA-binding transcrip 80.5 2.2 4.8E-05 37.2 3.9 45 39-87 8-52 (240)
411 PRK10434 srlR DNA-bindng trans 80.5 1.4 3.1E-05 38.8 2.8 47 37-87 7-53 (256)
412 COG1565 Uncharacterized conser 80.4 6 0.00013 36.5 6.7 60 163-228 50-117 (370)
413 COG1064 AdhP Zn-dependent alco 80.3 12 0.00025 34.5 8.6 93 194-299 164-261 (339)
414 PRK11886 bifunctional biotin-- 80.3 2.1 4.5E-05 39.0 3.9 45 38-86 7-51 (319)
415 PTZ00326 phenylalanyl-tRNA syn 80.3 2.1 4.6E-05 41.2 4.0 69 36-115 7-76 (494)
416 PF04445 SAM_MT: Putative SAM- 80.2 3.2 7E-05 36.0 4.7 63 198-262 77-158 (234)
417 PF03428 RP-C: Replication pro 80.0 2.8 6.2E-05 34.7 4.2 34 51-87 71-105 (177)
418 PF03721 UDPG_MGDP_dh_N: UDP-g 80.0 5.1 0.00011 33.4 5.8 99 199-302 2-124 (185)
419 COG0735 Fur Fe2+/Zn2+ uptake r 79.4 1.8 4E-05 34.6 2.8 53 35-87 21-75 (145)
420 TIGR02698 CopY_TcrY copper tra 79.0 2.7 6E-05 32.9 3.7 48 36-87 5-56 (130)
421 PF02796 HTH_7: Helix-turn-hel 78.9 0.98 2.1E-05 28.2 0.9 23 50-75 21-43 (45)
422 PF12692 Methyltransf_17: S-ad 78.4 12 0.00025 30.1 6.9 32 197-228 29-60 (160)
423 PRK10046 dpiA two-component re 78.3 2.5 5.4E-05 36.1 3.5 46 39-87 166-211 (225)
424 PHA02701 ORF020 dsRNA-binding 78.1 3 6.5E-05 34.5 3.7 49 36-87 5-53 (183)
425 PF13404 HTH_AsnC-type: AsnC-t 77.9 1.7 3.7E-05 26.8 1.8 36 36-75 4-39 (42)
426 COG1846 MarR Transcriptional r 77.1 2.4 5.3E-05 31.9 2.8 70 34-111 21-90 (126)
427 TIGR02787 codY_Gpos GTP-sensin 76.8 3 6.6E-05 36.1 3.5 46 39-87 187-232 (251)
428 COG1349 GlpR Transcriptional r 76.8 2.5 5.4E-05 37.2 3.1 46 38-87 8-53 (253)
429 cd01842 SGNH_hydrolase_like_5 76.6 5.8 0.00012 32.9 4.9 42 256-301 51-102 (183)
430 PRK09462 fur ferric uptake reg 76.5 3 6.4E-05 33.4 3.3 54 34-87 16-72 (148)
431 PRK09334 30S ribosomal protein 76.3 3.6 7.8E-05 29.7 3.3 36 49-87 40-75 (86)
432 TIGR01321 TrpR trp operon repr 76.0 2 4.4E-05 31.6 1.9 41 33-78 40-80 (94)
433 PF08221 HTH_9: RNA polymerase 75.9 2.4 5.1E-05 28.6 2.1 42 41-86 19-60 (62)
434 KOG0024 Sorbitol dehydrogenase 75.8 17 0.00037 33.1 8.1 95 194-299 167-275 (354)
435 PF05331 DUF742: Protein of un 75.4 3.3 7.1E-05 31.7 3.0 42 40-87 48-89 (114)
436 PRK00215 LexA repressor; Valid 75.4 3.3 7.2E-05 35.0 3.5 37 48-87 21-58 (205)
437 KOG2651 rRNA adenine N-6-methy 75.2 6.8 0.00015 36.4 5.5 38 194-232 151-188 (476)
438 COG0287 TyrA Prephenate dehydr 75.2 14 0.00031 33.0 7.5 82 198-286 4-90 (279)
439 PF13518 HTH_28: Helix-turn-he 74.9 3.1 6.7E-05 26.4 2.5 29 51-82 13-41 (52)
440 PF00056 Ldh_1_N: lactate/mala 74.5 28 0.0006 27.5 8.4 98 199-297 2-118 (141)
441 PF07279 DUF1442: Protein of u 74.3 55 0.0012 28.0 11.1 97 196-302 41-153 (218)
442 PRK12423 LexA repressor; Provi 74.3 3.9 8.5E-05 34.6 3.6 36 50-87 25-60 (202)
443 PTZ00357 methyltransferase; Pr 74.3 21 0.00045 36.0 8.8 96 156-251 640-774 (1072)
444 PF02153 PDH: Prephenate dehyd 74.0 7.4 0.00016 34.2 5.4 70 210-286 1-71 (258)
445 PRK11753 DNA-binding transcrip 73.8 4.6 9.9E-05 33.9 4.0 35 50-87 168-202 (211)
446 PF05584 Sulfolobus_pRN: Sulfo 73.7 4.8 0.0001 28.0 3.2 42 40-86 10-51 (72)
447 PF13384 HTH_23: Homeodomain-l 73.6 2.5 5.4E-05 26.7 1.8 40 37-82 7-46 (50)
448 COG3398 Uncharacterized protei 73.6 13 0.00029 31.8 6.4 49 35-87 101-149 (240)
449 TIGR03697 NtcA_cyano global ni 73.4 4.8 0.0001 33.2 3.9 36 49-87 142-177 (193)
450 TIGR03338 phnR_burk phosphonat 73.4 5.4 0.00012 33.7 4.3 37 48-87 32-68 (212)
451 PRK13239 alkylmercury lyase; P 73.2 2.5 5.3E-05 35.9 2.1 38 37-78 24-61 (206)
452 PRK11534 DNA-binding transcrip 73.2 6.8 0.00015 33.5 4.9 37 48-87 28-64 (224)
453 PRK11161 fumarate/nitrate redu 73.1 5.4 0.00012 34.2 4.3 36 49-87 183-218 (235)
454 PLN02353 probable UDP-glucose 72.5 25 0.00053 34.0 9.0 100 199-303 3-132 (473)
455 cd00315 Cyt_C5_DNA_methylase C 71.8 19 0.00041 32.0 7.6 97 199-301 2-114 (275)
456 COG1654 BirA Biotin operon rep 71.3 8.4 0.00018 27.4 4.1 55 40-108 11-65 (79)
457 COG1255 Uncharacterized protei 70.8 46 0.00099 25.6 8.8 81 194-285 11-95 (129)
458 PF03297 Ribosomal_S25: S25 ri 70.7 6.3 0.00014 29.7 3.6 37 49-88 58-94 (105)
459 COG0541 Ffh Signal recognition 70.7 16 0.00035 34.6 6.9 103 196-301 99-225 (451)
460 PRK01381 Trp operon repressor; 70.6 3.4 7.4E-05 30.7 2.0 40 34-78 41-80 (99)
461 PRK09391 fixK transcriptional 70.0 7.5 0.00016 33.4 4.5 35 49-86 178-212 (230)
462 PF00165 HTH_AraC: Bacterial r 69.9 4.8 0.00011 24.4 2.4 27 49-78 7-33 (42)
463 PF08222 HTH_CodY: CodY helix- 69.6 11 0.00024 24.9 4.0 36 49-87 3-38 (61)
464 TIGR03879 near_KaiC_dom probab 69.6 2.8 6E-05 29.4 1.3 34 49-85 31-64 (73)
465 PF03686 UPF0146: Uncharacteri 69.3 14 0.00031 28.8 5.3 85 195-296 12-101 (127)
466 PRK11642 exoribonuclease R; Pr 69.2 5.6 0.00012 41.1 4.0 48 40-87 24-72 (813)
467 COG4519 Uncharacterized protei 69.2 8 0.00017 27.3 3.5 52 48-105 20-71 (95)
468 PF09904 HTH_43: Winged helix- 68.9 3.9 8.5E-05 29.7 2.0 51 49-105 20-70 (90)
469 COG1802 GntR Transcriptional r 68.7 8.8 0.00019 33.0 4.7 50 31-87 24-73 (230)
470 PRK04424 fatty acid biosynthes 68.6 2.2 4.7E-05 35.7 0.8 46 38-87 10-55 (185)
471 PRK09954 putative kinase; Prov 68.5 4.3 9.4E-05 37.5 2.8 44 37-84 5-48 (362)
472 PRK13918 CRP/FNR family transc 68.1 7 0.00015 32.5 3.8 35 49-86 148-182 (202)
473 PF14502 HTH_41: Helix-turn-he 67.7 15 0.00033 23.3 4.2 36 50-88 6-41 (48)
474 KOG1227 Putative methyltransfe 67.6 3 6.6E-05 37.4 1.5 99 197-303 195-303 (351)
475 smart00531 TFIIE Transcription 67.6 6 0.00013 31.7 3.1 41 39-83 5-45 (147)
476 PF07848 PaaX: PaaX-like prote 66.7 13 0.00029 25.7 4.3 53 44-106 14-69 (70)
477 COG1725 Predicted transcriptio 66.5 11 0.00023 29.4 4.1 36 49-87 34-69 (125)
478 TIGR00635 ruvB Holliday juncti 66.4 5.8 0.00013 35.6 3.2 37 48-87 253-290 (305)
479 COG0640 ArsR Predicted transcr 66.0 8 0.00017 27.7 3.4 55 29-87 19-73 (110)
480 PRK11414 colanic acid/biofilm 66.0 12 0.00026 31.9 4.9 37 48-87 32-68 (221)
481 PRK00066 ldh L-lactate dehydro 65.9 42 0.00092 30.5 8.7 102 195-297 4-122 (315)
482 PRK07502 cyclohexadienyl dehyd 65.7 39 0.00084 30.4 8.4 84 197-286 6-92 (307)
483 PTZ00117 malate dehydrogenase; 65.7 53 0.0012 29.9 9.3 66 197-263 5-81 (319)
484 COG0686 Ald Alanine dehydrogen 65.0 23 0.00051 32.2 6.5 92 197-294 168-265 (371)
485 PRK01747 mnmC bifunctional tRN 65.0 14 0.00029 37.4 5.8 93 196-295 57-204 (662)
486 PF09681 Phage_rep_org_N: N-te 65.0 15 0.00033 28.4 4.8 48 49-109 52-99 (121)
487 cd05290 LDH_3 A subgroup of L- 64.9 41 0.00088 30.5 8.3 97 200-297 2-119 (307)
488 PRK07417 arogenate dehydrogena 64.6 37 0.0008 30.1 8.0 79 199-286 2-83 (279)
489 PHA02591 hypothetical protein; 64.3 5.3 0.00011 28.1 1.8 30 42-76 53-82 (83)
490 PF09821 AAA_assoc_C: C-termin 64.3 18 0.00039 27.9 5.1 75 55-144 2-76 (120)
491 PRK00135 scpB segregation and 64.2 10 0.00023 31.7 4.0 43 38-87 93-135 (188)
492 PF13814 Replic_Relax: Replica 64.2 14 0.00029 30.6 4.8 69 43-112 3-71 (191)
493 PRK10402 DNA-binding transcrip 63.7 10 0.00023 32.4 4.1 36 49-87 168-203 (226)
494 COG1568 Predicted methyltransf 63.4 22 0.00049 31.7 6.0 195 52-286 36-249 (354)
495 PF02295 z-alpha: Adenosine de 63.4 2.7 5.8E-05 28.8 0.3 50 36-87 5-54 (66)
496 PRK10736 hypothetical protein; 63.1 11 0.00023 35.2 4.3 45 38-87 311-355 (374)
497 PF01210 NAD_Gly3P_dh_N: NAD-d 63.1 20 0.00044 28.8 5.5 82 199-286 1-95 (157)
498 COG2524 Predicted transcriptio 63.0 9.5 0.00021 33.5 3.6 50 48-108 23-72 (294)
499 COG1675 TFA1 Transcription ini 62.7 7.9 0.00017 32.0 3.0 45 39-87 22-66 (176)
500 TIGR00561 pntA NAD(P) transhyd 62.5 34 0.00073 33.4 7.6 97 196-302 163-287 (511)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=4.1e-40 Score=291.52 Aligned_cols=274 Identities=32% Similarity=0.569 Sum_probs=244.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCCCHHHHHHhcC--CCCCCcchHHHHHHHHHHcCceeeecccC
Q 021867 13 LEAQAHVWNHIFNFINSMSLKCAVELGIPDIINKHGKPMTLNELVSALT--INPSKTRCVYRLMRILIHSGFFAQQTLNS 90 (306)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g--~~~~~~~~l~rlLr~L~~~g~l~~~~~~~ 90 (306)
.....+++++++++..++++.+|+||||||+|.+++ + +.|+|..+. ..|.++..+.|+||.|++.++++....
T Consensus 4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~-~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~-- 78 (342)
T KOG3178|consen 4 NEASLRAMRLANGFALPMVLKAACELGVFDILANAG-S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV-- 78 (342)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC-C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee--
Confidence 356788999999999999999999999999999753 2 778888776 344477899999999999999999862
Q ss_pred CCCCCCCCCceecChhchhhhcC-CCCChHHHHHHhcCccchhhhhhHHHHhhcCCCChhhhhcCCCccccccCCchHHH
Q 021867 91 SRNNNDEEQGYVLKNASKLLLKD-NPLSVTPFLQAMLDPILLSPWLKLSTWFQNDDPTPFDTLHGKSFWVYAGDEPKINN 169 (306)
Q Consensus 91 ~~~~~~~~~~y~~t~~s~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~e~~~~~~~~~~ 169 (306)
+.+ .|++++.++++.++ +..++.+++....+...++.|..+.++++.+. .+|..++|...|+|...+.....
T Consensus 79 -----~~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~ 151 (342)
T KOG3178|consen 79 -----GGE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSK 151 (342)
T ss_pred -----cce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHH
Confidence 123 89999999976643 34689999988888889999999999999988 68999999889999998888889
Q ss_pred HHHHHHHhchhhhHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEeccC
Q 021867 170 FFNEAMASDARLATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDM 249 (306)
Q Consensus 170 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~ 249 (306)
.|+++|...+....+.+++.+. .+++....||+|||.|..+..+...||+++++.+|+|.+++.++...+.|+.+.+|+
T Consensus 152 ~~~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm 230 (342)
T KOG3178|consen 152 DFNGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM 230 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc
Confidence 9999999998888888888776 478899999999999999999999999999999999999999986327799999999
Q ss_pred CCCCCCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 250 FEAIPPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 250 ~~~~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
|+..|.+|+|++.||||||+|++|++||++|+++|+| +|+|+|+|.+.|+
T Consensus 231 fq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 231 FQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPE 280 (342)
T ss_pred cccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCC
Confidence 9999999999999999999999999999999999999 9999999999996
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=6.4e-39 Score=280.99 Aligned_cols=202 Identities=37% Similarity=0.753 Sum_probs=180.4
Q ss_pred CCceecChhchhhhcCCC-CChHHHHHHhcCccchhhhhhHHHHhhcCCCChhhhhcCCCccccccCCchHHHHHHHHHH
Q 021867 98 EQGYVLKNASKLLLKDNP-LSVTPFLQAMLDPILLSPWLKLSTWFQNDDPTPFDTLHGKSFWVYAGDEPKINNFFNEAMA 176 (306)
Q Consensus 98 ~~~y~~t~~s~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~ 176 (306)
+++|++|+.|+.|..+++ .++..++.+...+.+++.|.+|+++++++. ++|+..+|.++|+|+.++|+..+.|..+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 589999999997776654 577888877667888999999999999998 889999999999999999999999999999
Q ss_pred hchhhhH-HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEeccCCCCCCC
Q 021867 177 SDARLAT-RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPP 255 (306)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p~ 255 (306)
..+.... ..+...++ +++..+|||||||+|.++..++++||+++++++|+|++++.+++ .+||++++||||+++|.
T Consensus 82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSS
T ss_pred hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhcc
Confidence 9887777 77788888 78899999999999999999999999999999999999999996 99999999999998999
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCC--cEEEEEeeecCCCCCC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKK--GKVIIIDMIRENKKRG 306 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~g--g~lli~e~~~~~~~~g 306 (306)
+|+|++++|||+|+|++|++||++++++|+| | |+|+|+|.++++++++
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~ 208 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTG 208 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSS
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCC
Confidence 9999999999999999999999999999998 7 9999999999998764
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=1.2e-37 Score=282.18 Aligned_cols=247 Identities=24% Similarity=0.401 Sum_probs=194.4
Q ss_pred HHHHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhc
Q 021867 28 NSMSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNAS 107 (306)
Q Consensus 28 ~~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (306)
...+|++|+++||||.|.+ +|.|++|||+++|+ +++.++|+||+|+++|+|++. +++|++|+.+
T Consensus 3 ~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~-----------~~~y~~t~~~ 66 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-----------DGKWSLTEFA 66 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec-----------CCcEecchhH
Confidence 5689999999999999986 79999999999999 789999999999999999986 4899999999
Q ss_pred hhhhcCCCC----ChHHHHHHhcCccchhhhhhHHHHhhcCCCChhhhhcCCCccccccCCchHHHHHHHHHH-hchhhh
Q 021867 108 KLLLKDNPL----SVTPFLQAMLDPILLSPWLKLSTWFQNDDPTPFDTLHGKSFWVYAGDEPKINNFFNEAMA-SDARLA 182 (306)
Q Consensus 108 ~~l~~~~~~----~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~-~~~~~~ 182 (306)
..+..+++. ++.++..+. .......|..|++++|++ ++|... +.+....++. ..|...|. ......
T Consensus 67 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~--~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~ 137 (306)
T TIGR02716 67 DYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ--KNFKGQ-----VPYPPVTRED-NLYFEEIHRSNAKFA 137 (306)
T ss_pred HhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC--cccccc-----cCCCCCCHHH-HHhHHHHHHhcchhH
Confidence 855554332 111232222 111235688999999853 344332 2222222333 23444443 333444
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEeccCCC-CCCC
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIPP 255 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p~ 255 (306)
.+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ ..+||+++++|+++ ++|+
T Consensus 138 ~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 138 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence 566677666 77889999999999999999999999999999999999998875 46799999999997 6778
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCCC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENKK 304 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (306)
+|+|++++++|+|+++++.++|++++++|+| ||+++|+|.++++++
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~ 261 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPE 261 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCC
Confidence 9999999999999999999999999999999 999999999887654
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=1.5e-15 Score=130.89 Aligned_cols=103 Identities=22% Similarity=0.398 Sum_probs=94.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-CCC--CccEEEehhhhc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVLLKWILH 266 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh 266 (306)
.+.+|||||||+|.++..+++..+..+++++|. +.|++.|++ ....|+|+.+|+.+ |+| .||+|.+++.|+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 678999999999999999999999999999999 999999997 12339999999999 988 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
+.+|.+ +.|++++|+|+| ||+++++|+..|+.
T Consensus 131 nv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~ 162 (238)
T COG2226 131 NVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDN 162 (238)
T ss_pred cCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCc
Confidence 999875 789999999999 99999999988765
No 5
>PRK06922 hypothetical protein; Provisional
Probab=99.63 E-value=3.6e-15 Score=143.59 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=114.4
Q ss_pred CCccccccCCchHHHHHHHHHHhchhhh--HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHH
Q 021867 155 KSFWVYAGDEPKINNFFNEAMASDARLA--TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHV 231 (306)
Q Consensus 155 ~~~~e~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~ 231 (306)
..+|+++...++..++|...|....... .......++ +....+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 4778999888989998887776533221 111222334 44578999999999999999999999999999999 778
Q ss_pred HHhchh----cCCCeEEEeccCCC-C--CC--CccEEEehhhhccC-----------CchHHHHHHHHHHHhcCCCCCCc
Q 021867 232 VNGLES----DLANLKYVGGDMFE-A--IP--PADAVLLKWILHDW-----------NDEECVKILKKCKEAVTSDDKKG 291 (306)
Q Consensus 232 ~~~a~~----~~~rv~~~~~d~~~-~--~p--~~D~~~~~~vlh~~-----------~d~~~~~iL~~~~~~L~p~~~gg 291 (306)
++.|++ ...+++++.+|..+ + ++ .+|+|+++.++|+| ++++..++|++++++|+| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 888875 23568889999876 3 33 49999999999976 346778999999999999 99
Q ss_pred EEEEEeeecCCCC
Q 021867 292 KVIIIDMIRENKK 304 (306)
Q Consensus 292 ~lli~e~~~~~~~ 304 (306)
+++|.|.++++++
T Consensus 532 rLII~D~v~~E~~ 544 (677)
T PRK06922 532 RIIIRDGIMTEDK 544 (677)
T ss_pred EEEEEeCccCCch
Confidence 9999999887654
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.63 E-value=3.2e-15 Score=114.96 Aligned_cols=98 Identities=23% Similarity=0.443 Sum_probs=84.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccC-CC-CC-CCccEEEehh-hh
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDM-FE-AI-PPADAVLLKW-IL 265 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~-~~-~~-p~~D~~~~~~-vl 265 (306)
..+|||||||+|.++..+++.+|..+++++|. |.+++.+++ ..+||+++.+|+ .. +. +.||+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999999 889998887 479999999999 33 23 3699999999 67
Q ss_pred ccCCc-hHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 266 HDWND-EECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 266 h~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
|++.+ ++..++|+++++.|+| ||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 65543 5778899999999999 88888864
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=7.8e-15 Score=128.95 Aligned_cols=106 Identities=17% Similarity=0.294 Sum_probs=93.5
Q ss_pred cCCCeEEEecCCccHHHHHHHH--HCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCCCccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAK--AFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~--~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~~~~~~v 264 (306)
....+|||||||+|..+..+++ .+|+.+++++|. +.+++.|++ ...+|+++.+|+.+ +.+++|++++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4568999999999999999988 468999999999 999999887 24589999999988 6678999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
+|++++++...++++++++|+| ||.+++.|.+..++
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~ 170 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFED 170 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCc
Confidence 9999887778999999999999 99999999776543
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=2.7e-15 Score=130.26 Aligned_cols=105 Identities=24% Similarity=0.489 Sum_probs=80.9
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-CCC--CccEEEehh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVLLKW 263 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~~~~~~ 263 (306)
...+.+|||+|||+|..+..++++. |+.+++++|+ +.|++.|++ ...+|+++.+|..+ |++ .||++++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567799999999999999999875 6789999999 999999987 34599999999998 877 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
.||+++|.. +.|++++|+||| ||+++|+|...|+.
T Consensus 125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~ 159 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRN 159 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SS
T ss_pred hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCC
Confidence 999999864 689999999999 99999999988864
No 9
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=6.4e-15 Score=128.87 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=94.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC--CCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCCCccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAF--PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~~~~~~v 264 (306)
....+|||||||+|.++..+++++ |+.+++++|+ +.+++.|++ ...+++++.+|+.+ +.+.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456789999999999999999874 7899999999 899998876 24589999999988 6778999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
+|++++++...+|++++++|+| ||++++.|.+.+++
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~ 167 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFED 167 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCC
Confidence 9999988888999999999999 99999999887654
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=9.2e-14 Score=123.03 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=89.8
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchh--------cCCCeEEEeccCCC-CCC--CccEEE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFE-AIP--PADAVL 260 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-~~p--~~D~~~ 260 (306)
.....+|||||||+|.++..+++.+ |+.+++++|+ +.|++.|++ ..++++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 3456899999999999999999875 6779999999 899998864 14589999999988 766 499999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 261 LKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 261 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
+..++|++++. .++|++++++|+| ||+++|+|...++
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~ 187 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKST 187 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCC
Confidence 99999999876 4789999999999 9999999987654
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.55 E-value=8.7e-14 Score=123.33 Aligned_cols=114 Identities=18% Similarity=0.367 Sum_probs=95.7
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCC-CCC--C
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--P 255 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~ 255 (306)
...+++.+. ..+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ ..++|+++.+|+.+ ++| .
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 345566665 6777899999999999999998776 679999999 788888876 34689999999987 666 4
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
||+|++..++++++.++...+|++++++|+| ||++++.|....+
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~ 161 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADK 161 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccc
Confidence 9999999998888866678999999999999 9999999987654
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=9.7e-14 Score=122.58 Aligned_cols=105 Identities=17% Similarity=0.269 Sum_probs=89.8
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCC--CCccEEE
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAI--PPADAVL 260 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~--p~~D~~~ 260 (306)
..+++.+. .....+|||||||+|.++..+++++|+.+++++|+ +.+++.|++ .+++++.+|+.+.. +.||+|+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence 45666665 56678999999999999999999999999999999 889998874 46899999987632 3699999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 261 LKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 261 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
++.++|+.++. .+++++++++|+| ||++++..
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELAP---GSWIAVQV 126 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEc
Confidence 99999998875 5789999999999 89998863
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=1.7e-13 Score=116.27 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=90.8
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-CCC-C
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-P 255 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-~ 255 (306)
+.+++.+. .....+|||+|||+|..+..|+++ ..+++++|+ +.+++.+++ ...+|++...|+.+ +.+ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 34455554 345689999999999999999986 468999999 888888776 23568999999877 444 5
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
||+|++..++|++++++...++++++++|+| ||++++++.+-++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~ 139 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTA 139 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCC
Confidence 9999999999998888888999999999999 8998887765443
No 14
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.52 E-value=2e-13 Score=116.20 Aligned_cols=103 Identities=18% Similarity=0.319 Sum_probs=91.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC------CeEEEecc-hHHHHhchh--------cCCCeEEEeccCCC-CCC--Cc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPN------LECTDFDL-PHVVNGLES--------DLANLKYVGGDMFE-AIP--PA 256 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-~~p--~~ 256 (306)
....++|||+||+|.++..+++.-+. .+++++|+ |++++.+++ ...++.++++|..+ |+| .+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34589999999999999999999888 78999999 999998876 34569999999999 888 49
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
|.|++.+-+.+|++.+ +.|++++|+||| ||++.+.|+---+
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~ 219 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVE 219 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccc
Confidence 9999999999999975 789999999999 9999999976443
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.52 E-value=1.2e-13 Score=112.34 Aligned_cols=99 Identities=23% Similarity=0.424 Sum_probs=87.1
Q ss_pred CCCeEEEecCCccHHHHHHH-HHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-C--CC-CccEEEehhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIA-KAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVLLKWI 264 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~~~~~~v 264 (306)
...+|||+|||+|.++..++ +.+|..+++++|+ +.+++.|++ ..++++|..+|+.+ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56799999999999999999 5688999999999 899999887 45689999999999 5 43 6999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+|++++.+ .+|+++.+.|++ +|.+++.+..
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPN 112 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEE
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEEECC
Confidence 99999874 789999999999 8999998876
No 16
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.50 E-value=1.4e-13 Score=101.94 Aligned_cols=89 Identities=24% Similarity=0.417 Sum_probs=76.7
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEeccCCC-CCC--CccEEEehhhhccCCchHHH
Q 021867 201 VDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVLLKWILHDWNDEECV 274 (306)
Q Consensus 201 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d~~~~ 274 (306)
||+|||+|..+..++++ +..+++++|. +.+++.+++ ...++.+..+|+.+ |++ .+|+|++.+++|++++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence 79999999999999998 8889999999 778888887 56678899999988 766 4999999999999944 46
Q ss_pred HHHHHHHHhcCCCCCCcEEEE
Q 021867 275 KILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 275 ~iL~~~~~~L~p~~~gg~lli 295 (306)
+++++++++||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 899999999999 898876
No 17
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=4e-13 Score=118.81 Aligned_cols=107 Identities=18% Similarity=0.314 Sum_probs=91.7
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCC--CCccEE
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAI--PPADAV 259 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~--p~~D~~ 259 (306)
...++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++..++++++.+|+.+.. ..+|++
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 455666665 56778999999999999999999999999999999 8899988876678999999987632 269999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 260 LLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 260 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+++.++|+.+|. .++|++++++|+| ||++++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999999988775 4789999999999 8998885
No 18
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.50 E-value=1.3e-12 Score=115.69 Aligned_cols=99 Identities=14% Similarity=0.281 Sum_probs=83.6
Q ss_pred cCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEecc-hHHHHhchhc--------------------------
Q 021867 195 EGLNSLVDVGGGIGT----VAKAIAKAFP-----NLECTDFDL-PHVVNGLESD-------------------------- 238 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~~-------------------------- 238 (306)
.+..+|+|+|||+|. +++.+++.+| +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5667777665 578999999 8899988861
Q ss_pred ------CCCeEEEeccCCCC-CC--CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 239 ------LANLKYVGGDMFEA-IP--PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 239 ------~~rv~~~~~d~~~~-~p--~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.++|+|..+|+.++ .+ .+|+|+++++||+++++...+++++++++|+| ||.|+|-
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEE
Confidence 14799999999983 33 59999999999999988888999999999999 8999984
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=99.50 E-value=4.1e-13 Score=123.30 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=86.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC--CccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~~~~~~v 264 (306)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ ..++|+|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999988 679999999 777877765 34689999999988 665 5999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
+|+++|. .+++++++++|+| ||+++|++...
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~ 226 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCH 226 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecc
Confidence 9999885 4789999999999 99999988653
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.46 E-value=8.5e-13 Score=114.73 Aligned_cols=111 Identities=21% Similarity=0.314 Sum_probs=91.6
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-CCC-
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP- 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p- 254 (306)
+.++..+. .....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 33444444 5567899999999999999999886 6789999999 788887775 34689999999987 555
Q ss_pred -CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 255 -PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 255 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
.+|+|++..++|++++. .++|+++.+.|+| ||+++++|...+
T Consensus 113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~ 155 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQP 155 (231)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCC
Confidence 49999999999988876 4789999999999 999999887544
No 21
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.45 E-value=9.4e-13 Score=112.25 Aligned_cols=104 Identities=17% Similarity=0.297 Sum_probs=89.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCCC--CccEEEehhhhccCCc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVLLKWILHDWND 270 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~~~~~~vlh~~~d 270 (306)
..+..+|||||||+|..+..+++..|..+++++|+ +.+++.|++..+++++..+|+.++.+ .||+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34567899999999999999999989999999999 88999998645678899999988655 5999999999999987
Q ss_pred hHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 271 EECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 271 ~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
++..+++++++++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 778899999999874 688888876543
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=1.6e-12 Score=110.15 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=86.5
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC-CCC-Cc
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PA 256 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~ 256 (306)
..+++.+. ...+.+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..-.+++...|+.. +.+ .|
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 34444444 345679999999999999999985 468999999 778887765 11137777888765 333 59
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
|+|++..++|+++++....++++++++|+| ||+++|++..-
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~ 136 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMD 136 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecc
Confidence 999999999999887788999999999999 99988876543
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.43 E-value=1.2e-12 Score=113.22 Aligned_cols=98 Identities=17% Similarity=0.333 Sum_probs=85.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC-CccEEEehhhhccC
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVLLKWILHDW 268 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~~~~~~vlh~~ 268 (306)
++|||||||.|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++...|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777777765 46789999999976 555 59999999999998
Q ss_pred CchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 269 NDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
++. ..+|+++++.|+| ||++++.+...
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~ 107 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIA 107 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEccc
Confidence 875 5889999999999 99999998753
No 24
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.42 E-value=6.3e-13 Score=110.53 Aligned_cols=107 Identities=20% Similarity=0.357 Sum_probs=95.8
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCCC--CccEE
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAV 259 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~~ 259 (306)
+.+++..++ ...+.+|+|+|||.|.....|++++|..+++++|. +.|++.|++...+++|..+|+.+-.| ++|++
T Consensus 19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 456777777 78889999999999999999999999999999998 99999998888999999999988444 69999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 260 LLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 260 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+.+-+||..+|- .++|.++...|.| ||.|-+.
T Consensus 97 faNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQ 128 (257)
T COG4106 97 FANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQ 128 (257)
T ss_pred hhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEE
Confidence 999999988874 6899999999999 8888764
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=2.7e-12 Score=123.32 Aligned_cols=111 Identities=19% Similarity=0.290 Sum_probs=92.5
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC-CCC--C
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--P 255 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~ 255 (306)
..+++.+. .....+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++ ...+++|..+|+++ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34555554 4567899999999999999998876 779999999 788888765 35689999999988 555 4
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
||+|++..+++++++. ..+|++++++|+| ||+++|.|....+
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~ 374 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSP 374 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCC
Confidence 9999999999999886 4789999999999 9999999887643
No 26
>PLN03075 nicotianamine synthase; Provisional
Probab=99.41 E-value=2e-12 Score=114.77 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=81.6
Q ss_pred cCCCeEEEecCCccHH--HHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEeccCCCCC---CCccEEEe
Q 021867 195 EGLNSLVDVGGGIGTV--AKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEAI---PPADAVLL 261 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~--~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~~---p~~D~~~~ 261 (306)
.++++|+|||||.|.+ +..+++.+|+.+++++|. +++++.|++ ..+||+|..+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3789999999998844 333446789999999999 888888887 3578999999998732 36999999
Q ss_pred hhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 262 KWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 262 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
. ++|+|+.++-.++|+++++.|+| ||.+++-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr 232 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR 232 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence 9 99999766668999999999999 7887764
No 27
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.41 E-value=6.4e-13 Score=100.40 Aligned_cols=87 Identities=24% Similarity=0.459 Sum_probs=73.4
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC-CCC--CccEEEeh-hhhcc
Q 021867 200 LVDVGGGIGTVAKAIAKAF---PNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVLLK-WILHD 267 (306)
Q Consensus 200 vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~~~~~-~vlh~ 267 (306)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ...+++++.+|+.+ ++. .+|+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 899998887 23589999999988 433 59999994 55999
Q ss_pred CCchHHHHHHHHHHHhcCC
Q 021867 268 WNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p 286 (306)
+++++..++|+++++.|+|
T Consensus 81 ~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP 99 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999
No 28
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.40 E-value=6.7e-14 Score=105.30 Aligned_cols=88 Identities=23% Similarity=0.434 Sum_probs=59.3
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCC---CeEEEeccCCCCCC--CccEEEehhhhccCC
Q 021867 201 VDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLA---NLKYVGGDMFEAIP--PADAVLLKWILHDWN 269 (306)
Q Consensus 201 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~---rv~~~~~d~~~~~p--~~D~~~~~~vlh~~~ 269 (306)
||||||+|.++..+++.+|..+++++|+ +.+++.+++ ... ++++...|.+...+ .||+|++.++||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 888877776 222 34555555555332 699999999999995
Q ss_pred chHHHHHHHHHHHhcCCCCCCcEE
Q 021867 270 DEECVKILKKCKEAVTSDDKKGKV 293 (306)
Q Consensus 270 d~~~~~iL~~~~~~L~p~~~gg~l 293 (306)
+ ...+|+++++.|+| ||+|
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 45899999999999 8875
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.40 E-value=2.1e-12 Score=117.57 Aligned_cols=101 Identities=26% Similarity=0.366 Sum_probs=88.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEeccCCC-CCC--CccEEEehhhhccCC
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVLLKWILHDWN 269 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~ 269 (306)
...+|||||||+|.++..+++.++..+++++|. +.+++.|++ ...+++++.+|+.+ +++ .||+|++..++|+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999998889999999 888888876 34679999999987 555 499999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 270 DEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 270 d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
+.+ ++|++++++|+| ||+++|++.+.+
T Consensus 193 d~~--~~L~e~~rvLkP---GG~LvIi~~~~p 219 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKI---GGKACLIGPVHP 219 (340)
T ss_pred CHH--HHHHHHHHhcCC---CcEEEEEEecCc
Confidence 875 689999999999 999999876654
No 30
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.38 E-value=5.7e-12 Score=114.73 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC-CccEEEehhhhc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVLLKWILH 266 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~~~~~~vlh 266 (306)
...+|||||||+|.++..+++.++. +++++|. +.++.+++. ...+|+++.+|+.+ +.+ .||+|++..++|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4579999999999999999998776 5999998 445544322 24589999999887 544 599999999999
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
+..+. ..+|+++++.|+| ||++++.+.+++.+
T Consensus 201 H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~ 232 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGD 232 (322)
T ss_pred ccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCC
Confidence 98876 4789999999999 89998876666543
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=4.5e-12 Score=111.93 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=82.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC--CCC--CccEEEehh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--AIP--PADAVLLKW 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~~p--~~D~~~~~~ 263 (306)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.|++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 468999999 899998876 24689999999865 233 599999999
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
+||+++++. .+|++++++|+| ||+++|+..
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~ 150 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFY 150 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEE
Confidence 999998764 789999999999 899988643
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.37 E-value=8.4e-12 Score=112.69 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=85.4
Q ss_pred HHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CC-CCc
Q 021867 186 VIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AI-PPA 256 (306)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~-p~~ 256 (306)
++..+. ....++|||||||+|.++..++..++. +++++|. +.++.+++. ...++.+...++.+ +. ..|
T Consensus 113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 444443 344589999999999999999988765 7999998 556654332 34678888888766 32 369
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
|+|++..+||++++. ...|++++++|+| ||.|++.+.+++.
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g 230 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDG 230 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecC
Confidence 999999999999886 4789999999999 9999998777654
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.37 E-value=1e-11 Score=107.87 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=89.7
Q ss_pred HHhhchhhhcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC-CCC--Cc
Q 021867 186 VIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PA 256 (306)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~ 256 (306)
+++.+. .....+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ...++++..+|+.+ +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344444 5667899999999999999999998 7889999999 777777765 35679999999877 544 59
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
|+|++.+++|++++. ..+++++++.|+| ||++++.++.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTD 126 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecC
Confidence 999999999999886 4689999999999 9999998853
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=9.1e-12 Score=108.34 Aligned_cols=99 Identities=19% Similarity=0.313 Sum_probs=85.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEeccCCC-CCC--CccEEEehhhhccCCc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP--PADAVLLKWILHDWND 270 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d 270 (306)
.+.+|||||||+|.++..+++.+|..+++++|. +.+++.+++ ..++++++.+|+.+ +.+ .||+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457899999999999999999999999999999 777777766 44689999999987 544 4999999999998777
Q ss_pred hHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 271 EECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 271 ~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
. ..+|++++++|+| ||.+++.++.
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~ 137 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFG 137 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCC
Confidence 5 4789999999999 8999987643
No 35
>PRK06202 hypothetical protein; Provisional
Probab=99.34 E-value=2.5e-11 Score=105.65 Aligned_cols=101 Identities=26% Similarity=0.293 Sum_probs=80.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEecc-hHHHHhchh--cCCCeEEEeccCCC-CCC--CccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKA----FPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~~~~~~v 264 (306)
.+..+|||||||+|.++..|++. .|+.+++++|+ +.+++.|++ ...++++...+... +.+ .+|+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45689999999999999888764 46679999999 899999886 33456766665433 222 5999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
||++++++...+|+++++.++ |.++|.|...
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~ 169 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIR 169 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEecccc
Confidence 999999887899999999986 4667766554
No 36
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.34 E-value=6.5e-12 Score=113.89 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=81.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC--CccEEEehhhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVLLKWIL 265 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~~~~~~vl 265 (306)
...+|||||||+|.++..+++ ++.+++++|. +.+++.|+. ...+|+++.+|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 446899999999999998886 3678999999 888888875 23589999999876 433 59999999999
Q ss_pred ccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 266 HDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
|+++|.+ .+|+++++.|+| ||.++|.+.
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~ 236 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTI 236 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEEC
Confidence 9999874 789999999999 899998764
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=1.5e-11 Score=110.41 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=83.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC-CCC-CccEEEehhhhcc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVLLKWILHD 267 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~~~~~~vlh~ 267 (306)
..+.+|||||||+|..+..+++. +.+++++|. +.+++.+++ ..-++++...|+.+ +.+ .||+|++..+||+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999885 478999999 777877765 22278888899876 344 5999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
.++++...+++++++.|+| ||.+++++..-
T Consensus 197 l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~ 226 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNP---GGYNLIVCAMD 226 (287)
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 9888888999999999999 89988876543
No 38
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.33 E-value=2.4e-11 Score=105.71 Aligned_cols=104 Identities=23% Similarity=0.340 Sum_probs=88.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC--CccEEEehh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVLLKW 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~~~~~~ 263 (306)
.+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .+|+|++.+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 3567999999999999999999998 789999999 777777776 23579999999987 433 599999999
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
++|++++. ..+|+++++.|+| ||+++++|...++.
T Consensus 130 ~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~ 164 (239)
T PRK00216 130 GLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTN 164 (239)
T ss_pred ccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCc
Confidence 99998875 4789999999999 89999998876543
No 39
>PRK05785 hypothetical protein; Provisional
Probab=99.33 E-value=2.6e-11 Score=105.07 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=79.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCC-CCC--CccEEEehhhhccCCch
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVLLKWILHDWNDE 271 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d~ 271 (306)
...+|||||||+|.++..+++.+ +.+++++|. ++|++.|++ +..++.+|+.+ |++ .||+|++..+||+++|.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~---~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLV---ADDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHh---ccceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 46799999999999999999987 578999999 999999874 23567888887 666 49999999999999886
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 272 ECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 272 ~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
+ +.|++++++|+| . +.|+|...|+
T Consensus 127 ~--~~l~e~~RvLkp---~--~~ile~~~p~ 150 (226)
T PRK05785 127 E--KVIAEFTRVSRK---Q--VGFIAMGKPD 150 (226)
T ss_pred H--HHHHHHHHHhcC---c--eEEEEeCCCC
Confidence 4 689999999998 3 4456655543
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.33 E-value=1.7e-11 Score=109.20 Aligned_cols=104 Identities=15% Similarity=0.311 Sum_probs=87.4
Q ss_pred hcCCCeEEEecCCccHHHHHHHHH-CCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-CCC--CccEEEehh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVLLKW 263 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~~~~~~ 263 (306)
+....+|||||||+|..+..+++. .+..+++++|+ +.+++.|++ ..+++++..+|+.+ +++ .||+|+...
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 456789999999999988877776 45678999999 888998886 34689999999987 655 599999999
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
++|.+++. .+++++++++|+| ||++++.+.+..+
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~ 188 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRG 188 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccC
Confidence 99988875 4689999999999 9999999876543
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=1.8e-11 Score=117.67 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=92.7
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCC---CCC--
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE---AIP-- 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~---~~p-- 254 (306)
..+++.++ .....+|||||||+|.++..+++.+. +++++|. +.+++.+++ ..++++++.+|+.+ +.|
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 34455444 34457999999999999999998854 7899998 888877654 35689999999964 344
Q ss_pred CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 255 PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 255 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
.||+|++..++|++++++...+|+++++.|+| ||++++.|.+....
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~ 148 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQS 148 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCC
Confidence 59999999999999998888999999999999 99999999876654
No 42
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=2.4e-11 Score=106.87 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=101.8
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCCC
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPP 255 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~ 255 (306)
...+++++. +.+..+|||||||-|.+++..+++| +++++++++ ++..+.+++ ...+|++.-.|+.+....
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 355677787 8999999999999999999999999 999999999 677777665 566999999999885445
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCCC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENKK 304 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (306)
||-|+..-.++++..+.-...++++++.|+| ||+++++....++..
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~ 183 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQE 183 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcc
Confidence 9999999999999998888999999999999 999999998877643
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.32 E-value=1.6e-11 Score=109.07 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=88.1
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCCC
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPP 255 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~ 255 (306)
...+++... +.+..+|||||||-|.++..+++++ +++++++.+ ++..+.+++ ..++|++...|+.+-.+.
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 355677776 7888999999999999999999999 789999999 666666654 578999999999873337
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
||.|+....+.+...+....+++++.+.|+| ||++++...+.++
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~ 171 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRD 171 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEeccccc
Confidence 9999999999999887778999999999999 9999998777654
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.32 E-value=3.4e-11 Score=106.05 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=86.2
Q ss_pred hHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCC-CCC--Ccc
Q 021867 182 ATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PAD 257 (306)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D 257 (306)
.+..+++.+. .....+|||+|||+|.++..+.+. ..+++++|+ +.+++.+++....+.++.+|+.+ +++ .||
T Consensus 30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 3444555554 345689999999999999888764 468999999 88999888644456789999987 555 499
Q ss_pred EEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 258 AVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 258 ~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+|+++.++|..++. ..+|++++++|+| ||.+++....
T Consensus 106 ~V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~ 142 (251)
T PRK10258 106 LAWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLV 142 (251)
T ss_pred EEEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCC
Confidence 99999999976665 5789999999999 8999887543
No 45
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.31 E-value=2.3e-11 Score=112.33 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=87.8
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----c---CCCeEEEeccCCCCCC
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----D---LANLKYVGGDMFEAIP 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~---~~rv~~~~~d~~~~~p 254 (306)
..+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ . .+++++...|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 44556665 23346999999999999999999999999999999 677777775 1 2478999999988543
Q ss_pred --CccEEEehhhhc---cCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 255 --PADAVLLKWILH---DWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 255 --~~D~~~~~~vlh---~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
.||+|+++-.+| .++++.+.++++.+++.|+| ||+++|+-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 599999976655 35666778899999999999 89998874
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.31 E-value=2e-11 Score=102.76 Aligned_cols=97 Identities=22% Similarity=0.395 Sum_probs=79.9
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC-CccEEEehhhhc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVLLKWILH 266 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~~~~~~vlh 266 (306)
.....+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..++++++.+|...+.+ .+|++++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 45678999999999999999999999999999999 788888875 23679999999865554 599999876654
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
++ ..+++.+++.|+| ||++++...
T Consensus 109 ~~-----~~~l~~~~~~Lk~---gG~lv~~~~ 132 (187)
T PRK08287 109 NL-----TAIIDWSLAHLHP---GGRLVLTFI 132 (187)
T ss_pred CH-----HHHHHHHHHhcCC---CeEEEEEEe
Confidence 32 3579999999999 899877654
No 47
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.30 E-value=5.7e-11 Score=102.51 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=89.7
Q ss_pred cccccCCchHHHHHHHHHHhchhhhHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhch
Q 021867 158 WVYAGDEPKINNFFNEAMASDARLATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLE 236 (306)
Q Consensus 158 ~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~ 236 (306)
|+.+...+.....+...|..........+++.+........+|||||||+|.++..+++. ..+++++|+ +.+++.|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~ 94 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMAR 94 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 343444334444444444322222333333333210235689999999999999999876 458999998 88898887
Q ss_pred h------cCCCeEEEeccCCCCCCCccEEEehhhhccCCchHHHHHHHHHHHhcCC
Q 021867 237 S------DLANLKYVGGDMFEAIPPADAVLLKWILHDWNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 237 ~------~~~rv~~~~~d~~~~~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p 286 (306)
+ ..+++++..+|+.+....||++++..++++++++....+++++++.+++
T Consensus 95 ~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~ 150 (219)
T TIGR02021 95 NRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE 150 (219)
T ss_pred HHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC
Confidence 6 2258999999998743679999999999999887778899999998876
No 48
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.29 E-value=1.8e-11 Score=101.43 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=80.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCCCCC--CccEEEehhhhcc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP--PADAVLLKWILHD 267 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p--~~D~~~~~~vlh~ 267 (306)
-....+++|+|||.|.+...|+.+.- +++++|. +..++.|++ ..++|+++..|+-+..| .||+|+++.|+|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 35567899999999999999999863 6889999 899999987 56899999999988655 5999999999999
Q ss_pred CCc-hHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 268 WND-EECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 268 ~~d-~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
+++ ++...+++++.++|+| ||.|++...
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence 986 6778899999999999 899988654
No 49
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.29 E-value=5e-11 Score=102.64 Aligned_cols=103 Identities=20% Similarity=0.321 Sum_probs=88.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEecc-hHHHHhchh---cCCCeEEEeccCCC-CCC--CccEEEehhhhc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--PADAVLLKWILH 266 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh 266 (306)
.+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|++++..++|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 46789999999999999999999997 78999999 777777765 34679999999987 444 599999999999
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
+.++. ..+|+++++.|+| ||++++++...+.
T Consensus 118 ~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~ 148 (223)
T TIGR01934 118 NVTDI--QKALREMYRVLKP---GGRLVILEFSKPA 148 (223)
T ss_pred CcccH--HHHHHHHHHHcCC---CcEEEEEEecCCC
Confidence 88875 5789999999999 9999999876543
No 50
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.28 E-value=4.8e-11 Score=98.89 Aligned_cols=99 Identities=23% Similarity=0.415 Sum_probs=81.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC--CccEEEehhhhcc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVLLKWILHD 267 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~~~~~~vlh~ 267 (306)
...+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..+.++++..|.+++.+ .||+|++.=.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 677999999999999999999999999999999 888888776 23339999999999665 5999999988886
Q ss_pred CCc---hHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 268 WND---EECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 268 ~~d---~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
-.+ +-..++++.+.+.|+| ||+++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 554 3457889999999999 89996643
No 51
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.26 E-value=7.9e-11 Score=91.76 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=76.7
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC---CC-CCccEEEehh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AI-PPADAVLLKW 263 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~-p~~D~~~~~~ 263 (306)
.....+|+|+|||+|.++..+++++|..+++++|. +.+++.+++ ..++++++.+|... .. +.+|++++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 44567999999999999999999999999999999 777877765 34689999998764 12 3699999876
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
..+ ....+++++++.|+| ||++++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 543 234789999999999 8888764
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.24 E-value=1.4e-10 Score=97.41 Aligned_cols=95 Identities=23% Similarity=0.292 Sum_probs=78.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-CCC-CccEEEehhhhcc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-PADAVLLKWILHD 267 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-~~D~~~~~~vlh~ 267 (306)
...+|||||||+|..+..+++++|+.+++++|. +.+++.|++ ..++++++.+|+.+ +.. .||+|++..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 468999999999999999999999999999999 788888776 34459999999977 323 5999998652
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
.+ ...+++.+++.|+| ||++++++..
T Consensus 122 -~~--~~~~l~~~~~~Lkp---GG~lv~~~~~ 147 (187)
T PRK00107 122 -AS--LSDLVELCLPLLKP---GGRFLALKGR 147 (187)
T ss_pred -cC--HHHHHHHHHHhcCC---CeEEEEEeCC
Confidence 22 34689999999999 8999988643
No 53
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.24 E-value=1.5e-10 Score=107.89 Aligned_cols=112 Identities=9% Similarity=0.129 Sum_probs=90.2
Q ss_pred HHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEeccCCCCCCCccEEEe
Q 021867 185 VVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFEAIPPADAVLL 261 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~~~p~~D~~~~ 261 (306)
.+++.+. .....+|||||||+|.++..+++.+ +.+++++|+ +++++.|++ ..-.+++...|+.+....||+|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 3445444 5667899999999999999999876 579999999 888888876 223488888887663236999999
Q ss_pred hhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 262 KWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 262 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
..++++.+++....+++++++.|+| ||++++.+...++
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~ 272 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNK 272 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCC
Confidence 9999988877667899999999999 8999998765543
No 54
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.23 E-value=1.2e-10 Score=99.88 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=85.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEeccCCC-C---
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFE-A--- 252 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~-~--- 252 (306)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+.+ ...+|++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 35579999999999999999986 678999999 777776422 13579999999998 3
Q ss_pred CCCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 253 IPPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 253 ~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
.+.||.++-+.++|+++.+...+.++.+.++|+| ||+++++-...++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~ 157 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQ 157 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCC
Confidence 2358999999999999998888999999999999 8988887665543
No 55
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.23 E-value=1.3e-10 Score=106.55 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=81.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCCCC-CccEEEehhhhccC--
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-PADAVLLKWILHDW-- 268 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-~~D~~~~~~vlh~~-- 268 (306)
..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..-..+++..|.++..+ .||+|+++-.+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 45899999999999999999999999999999 778888775 12235678889887544 59999999999974
Q ss_pred -CchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 269 -NDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 269 -~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
......++++++.+.|+| ||+++|+-.
T Consensus 277 ~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred ccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 234567899999999999 899988754
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.22 E-value=5.3e-11 Score=99.57 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=74.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-C-CCCccEEEehhhhccC
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A-IPPADAVLLKWILHDW 268 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~-~p~~D~~~~~~vlh~~ 268 (306)
..+|||||||+|.++..++..+|+.+++++|. +.+++.+++ ..++|+++.+|+.+ + ...||+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999999999999999999999999 667766654 34579999999987 3 23699998865 5533
Q ss_pred CchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 269 NDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
..+++.+++.|+| ||++++..
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEc
Confidence 2468888999999 89998874
No 57
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.20 E-value=7.3e-11 Score=96.18 Aligned_cols=95 Identities=23% Similarity=0.328 Sum_probs=74.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCC---CCCCccEEEehhhhccCC
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIPPADAVLLKWILHDWN 269 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p~~D~~~~~~vlh~~~ 269 (306)
.....+|||||||.|.++..+++... +++++|. +.+++. .++.....+... +...||+|++..+||+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 35678999999999999999976644 8999999 666655 223333332223 223699999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 270 DEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 270 d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
+. ..+|+++++.|+| ||.+++.+...
T Consensus 93 d~--~~~l~~l~~~Lkp---gG~l~~~~~~~ 118 (161)
T PF13489_consen 93 DP--EEFLKELSRLLKP---GGYLVISDPNR 118 (161)
T ss_dssp HH--HHHHHHHHHCEEE---EEEEEEEEEBT
T ss_pred cH--HHHHHHHHHhcCC---CCEEEEEEcCC
Confidence 74 5889999999999 89999988765
No 58
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.19 E-value=1.8e-10 Score=104.16 Aligned_cols=97 Identities=14% Similarity=0.277 Sum_probs=79.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC--CC-C-----ccEE
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--IP-P-----ADAV 259 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~p-~-----~D~~ 259 (306)
...+|||+|||+|..+..|+++.+ ..+++++|+ +++++.+.+ ..-+|.++.+|+.+. .+ . ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 457899999999999999999987 588999999 788887765 123577789999873 33 2 2356
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 260 LLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 260 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
++...+|+++++++..+|++++++|+| ||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 677899999999999999999999999 888876
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.18 E-value=3e-10 Score=94.86 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=82.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCCC-CCccEEEehhhhccC
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAI-PPADAVLLKWILHDW 268 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~-p~~D~~~~~~vlh~~ 268 (306)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..-+++++.+|+++.. +.||+++++..+|..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999877 8999999 888888776 2336889999988733 369999999888766
Q ss_pred CchH-------------------HHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 269 NDEE-------------------CVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 269 ~d~~-------------------~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
+++. ..++|+++.+.|+| ||++++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~ 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC
Confidence 5421 35689999999999 999999886554
No 60
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.17 E-value=3.5e-10 Score=98.09 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=74.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCCCccEEEehhhhcc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVLLKWILHD 267 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~~~~~~vlh~ 267 (306)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.|++ ..+++++..+|+......||++++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4567999999999999999998754 5999998 888888876 225899999995433346999999999999
Q ss_pred CCchHHHHHHHHHHHhcCC
Q 021867 268 WNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p 286 (306)
+++++...+++++.+.+++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG 158 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC
Confidence 9998888999999987754
No 61
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.17 E-value=8.6e-11 Score=100.08 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=79.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCC--eEEEeccCCC-C--CCCccEEEehhhhcc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLAN--LKYVGGDMFE-A--IPPADAVLLKWILHD 267 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~r--v~~~~~d~~~-~--~p~~D~~~~~~vlh~ 267 (306)
...+|||||||.|.++..+++.. .++++.|+ +..++.|+. ..+. |.+.+....+ . ...||+|++..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 45789999999999999999986 78999999 788888885 2333 4466665555 2 236999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
.+|++ .++++|.+.+|| ||.+++....
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STin 163 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTIN 163 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEeccc
Confidence 99986 589999999999 8988887654
No 62
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.16 E-value=4.3e-10 Score=94.13 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=81.7
Q ss_pred HHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC-CCC-Ccc
Q 021867 185 VVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PAD 257 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D 257 (306)
.+++.++ .-.+.++||+|||.|..+.-|+++ +..++.+|. +..++.+++ ..=.|+....|+.+ .++ .+|
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3455555 445789999999999999999998 578999998 555655544 23338899999987 455 599
Q ss_pred EEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 258 AVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 258 ~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+|++..|+++++.+....+++++.+.++| ||.++|+..+
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~ 135 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFM 135 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEec
Confidence 99999999999998889999999999999 8888876554
No 63
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.16 E-value=7.3e-11 Score=101.26 Aligned_cols=95 Identities=21% Similarity=0.258 Sum_probs=81.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCC----CeEEEeccCCCCCCCccEEEehhhh
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLA----NLKYVGGDMFEAIPPADAVLLKWIL 265 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~----rv~~~~~d~~~~~p~~D~~~~~~vl 265 (306)
.+|||||||.|.++..|++.. .+++++|. +.+++.|++ ... |+++.+.|.....+.||+|+++.|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 679999999999999999986 67899999 888888886 222 5888888887755669999999999
Q ss_pred ccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 266 HDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+|..|+ ..+++.+.+.|+| +|+++|.+..
T Consensus 169 eHV~dp--~~~l~~l~~~lkP---~G~lfittin 197 (282)
T KOG1270|consen 169 EHVKDP--QEFLNCLSALLKP---NGRLFITTIN 197 (282)
T ss_pred HHHhCH--HHHHHHHHHHhCC---CCceEeeehh
Confidence 999887 4789999999999 8999997653
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.15 E-value=1.7e-10 Score=98.24 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=78.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccC-CC-C--CC--CccEEEehh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM-FE-A--IP--PADAVLLKW 263 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~-~~-~--~p--~~D~~~~~~ 263 (306)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..++++++.+|+ .. + .+ .+|++++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 467899999999999999999999999999999 888888775 236899999999 33 3 33 489999876
Q ss_pred hhccCCc------hHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 264 ILHDWND------EECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 264 vlh~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
..+.... .....+|+++++.|+| ||.++|..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 5432211 1135789999999999 89998864
No 65
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=6.7e-10 Score=98.05 Aligned_cols=111 Identities=16% Similarity=0.263 Sum_probs=89.2
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC-C
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-P 255 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~ 255 (306)
.+-+++.++ .....+|+|+|||.|.++..+++.+|+.+++.+|. ...++.+++ ..++.++...|.+++.. .
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 345667777 34344999999999999999999999999999999 666777776 33444678889999766 5
Q ss_pred ccEEEehhhhccC---CchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 256 ADAVLLKWILHDW---NDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 256 ~D~~~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
||+|+++=.+|.= .+.-+.++++.+++.|++ ||.|.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 9999999999863 334456899999999999 999998754
No 66
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.11 E-value=1.9e-09 Score=92.80 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=84.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEeccCCCCC---
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEAI--- 253 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~~--- 253 (306)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+.+ ...+|++..+|+++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999985 678999999 676776522 1467999999999832
Q ss_pred -CCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 254 -PPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 254 -p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
+.+|+|+-+-++|.++.+...+.++.+.++|+| ||+++++....++.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~ 161 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQE 161 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCc
Confidence 358999999999999999889999999999999 88766655544433
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.10 E-value=5.2e-10 Score=94.70 Aligned_cols=98 Identities=20% Similarity=0.330 Sum_probs=77.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-C---CC--CccEEEehh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A---IP--PADAVLLKW 263 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~---~p--~~D~~~~~~ 263 (306)
...++||||||+|.++..+++++|+.+++++|+ +.+++.|++ ..++|+++.+|+.+ + .+ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456899999999999999999999999999999 778877765 34689999999975 1 33 478888776
Q ss_pred hhccCCchHH-------HHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 264 ILHDWNDEEC-------VKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 264 vlh~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
..+ |+.... ..+++.++++|+| ||.|++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 543 433211 3689999999999 89987753
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=1.2e-09 Score=93.41 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=76.0
Q ss_pred HHhhchhhhcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC---
Q 021867 186 VIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--- 254 (306)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--- 254 (306)
+++.+. .....+|||||||+|..+..+++..+ ..+++++|. +.+++.|++ ..++++++.+|+.+..+
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344443 45567999999999999999998875 558999999 788887775 23579999999987433
Q ss_pred CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 255 PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 255 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.||+|++..+++..+ +++.+.|+| ||+|++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 599999998886554 356788999 8998774
No 69
>PRK04266 fibrillarin; Provisional
Probab=99.08 E-value=1.8e-09 Score=93.30 Aligned_cols=94 Identities=11% Similarity=0.177 Sum_probs=73.4
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCCC-----CC-CccEEEehh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVLLKW 263 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~~~~~~ 263 (306)
..+..+|||+|||+|.++..+++..+.-+++++|+ +.+++.+.+ ...+|.++.+|..++ .+ .+|+++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~--- 146 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY--- 146 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE---
Confidence 55678999999999999999999988668999999 766664433 346799999998753 22 488887
Q ss_pred hhccCCch-HHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 264 ILHDWNDE-ECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 264 vlh~~~d~-~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
|+.+++ ....+|+++++.|+| ||+++|
T Consensus 147 --~d~~~p~~~~~~L~~~~r~LKp---GG~lvI 174 (226)
T PRK04266 147 --QDVAQPNQAEIAIDNAEFFLKD---GGYLLL 174 (226)
T ss_pred --ECCCChhHHHHHHHHHHHhcCC---CcEEEE
Confidence 444443 234568999999999 999999
No 70
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.07 E-value=2e-09 Score=94.60 Aligned_cols=98 Identities=23% Similarity=0.389 Sum_probs=77.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC--CccEEEehhhhc-
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVLLKWILH- 266 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~~~~~~vlh- 266 (306)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|++++.+ .+|+|++.-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456899999999999999999999999999998 888887775 34579999999988654 599998843322
Q ss_pred -----cCCchH------------------HHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 267 -----DWNDEE------------------CVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 267 -----~~~d~~------------------~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.+..+. ...+++++.+.|+| ||++++.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~ 216 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE 216 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE
Confidence 222211 23689999999999 8887764
No 71
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.07 E-value=1.4e-09 Score=97.52 Aligned_cols=97 Identities=23% Similarity=0.387 Sum_probs=76.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC--CccEEEehh---
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVLLKW--- 263 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~~~~~~--- 263 (306)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++|+++.+|++++.+ .+|+|++.=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999999 888888876 24689999999988655 499999851
Q ss_pred ----------hhccCCc----------hHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 264 ----------ILHDWND----------EECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 264 ----------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
..++.+. +....+++.+.+.|+| ||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1121111 1236789999999999 787764
No 72
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.06 E-value=1e-09 Score=97.83 Aligned_cols=91 Identities=18% Similarity=0.294 Sum_probs=74.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC---eEEEecc-hHHHHhchhcCCCeEEEeccCCC-CCC--CccEEEehhhhccC
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNL---ECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVLLKWILHDW 268 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~---~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~ 268 (306)
...+|||||||+|.++..+++.+|.. +++++|+ +.+++.|++..+++++..+|..+ |++ .+|+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999988753 6899999 88888887656789999999988 665 4999987543
Q ss_pred CchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 269 NDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
+ ..+++++++|+| ||+++++.+
T Consensus 161 ~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236788999999 899998753
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=2.3e-09 Score=91.98 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=77.5
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC--
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-- 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-- 254 (306)
..+++.++ ..+..+|||||||+|.++..+++.. ++.+++++|. +.+++.+++ ..++|+++.+|..+..+
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 44455555 5677899999999999999998875 4568999999 888888876 34689999999987332
Q ss_pred -CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 255 -PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 255 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.||+|++....+..+ +.+.+.|+| ||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence 599999887665433 355678999 8998874
No 74
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=2.3e-09 Score=97.03 Aligned_cols=95 Identities=23% Similarity=0.379 Sum_probs=76.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC--CccEEEehh-----
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVLLKW----- 263 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~~~~~~----- 263 (306)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++|+++.+|++++.+ .||+|++.=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888888876 24689999999988554 599999751
Q ss_pred --------hhccCCc----------hHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 264 --------ILHDWND----------EECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 264 --------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
..++.|. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1122221 2236789999999999 787775
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.01 E-value=4.7e-09 Score=90.33 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=76.4
Q ss_pred HHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC---
Q 021867 185 VVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--- 254 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--- 254 (306)
.+++.+. .....+|||||||+|.++..+++..+ +.+++++|. +.+++.|++ ..++++++.+|..+..+
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444444 56678999999999999999999865 467999998 888888876 34689999999987322
Q ss_pred CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 255 PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 255 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.||+|++....+. +.+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence 5999998765543 34556788999 8998874
No 76
>PRK04457 spermidine synthase; Provisional
Probab=99.00 E-value=1.7e-09 Score=95.77 Aligned_cols=98 Identities=19% Similarity=0.331 Sum_probs=78.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC---CCC-CccEEEehh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP-PADAVLLKW 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p-~~D~~~~~~ 263 (306)
+++++|||||||.|.++..+++.+|+.+++++|+ |.+++.|++ ..+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4578999999999999999999999999999999 999999887 24789999999865 233 599998752
Q ss_pred hhcc--CCch-HHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 264 ILHD--WNDE-ECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 264 vlh~--~~d~-~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.+. .+.. ....+++++++.|+| ||+++|.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 1211 125889999999999 8888874
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.00 E-value=5.9e-09 Score=93.54 Aligned_cols=95 Identities=20% Similarity=0.348 Sum_probs=75.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC--CccEEEeh------
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVLLK------ 262 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~~~~~------ 262 (306)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.|++ ..++++++.+|++++.+ .+|+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 788888876 33579999999998665 59999885
Q ss_pred -------hhhccCCc----------hHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 263 -------WILHDWND----------EECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 263 -------~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
.+.++-|. +...++++.+.+.|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 22222221 2356789999999999 776654
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.00 E-value=3.7e-09 Score=97.48 Aligned_cols=98 Identities=16% Similarity=0.288 Sum_probs=77.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC---CCC--CccEEEehh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP--PADAVLLKW 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p--~~D~~~~~~ 263 (306)
.....+||||||+|.++..+++++|+..++++|+ +.+++.+.+ ..++|.++.+|+.. ..+ .+|.|++.+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3456899999999999999999999999999999 667666654 45689999999843 344 489998865
Q ss_pred hhccCCchHH-----HHHHHHHHHhcCCCCCCcEEEEE
Q 021867 264 ILHDWNDEEC-----VKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 264 vlh~~~d~~~-----~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.. .|+.... ..+|+.++++|+| ||.+.+.
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~ 234 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELR 234 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEE
Confidence 43 2554322 4689999999999 8998874
No 79
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.00 E-value=5.4e-09 Score=88.62 Aligned_cols=103 Identities=20% Similarity=0.318 Sum_probs=78.6
Q ss_pred HHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC---CC-CC
Q 021867 186 VIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AI-PP 255 (306)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~-p~ 255 (306)
+++.++ .....+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ..++++++.+|+.+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344444 45668999999999999999999999999999999 888888775 33679999999865 22 24
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+|.+++. .. .....+++++.+.|+| ||++++....
T Consensus 110 ~d~v~~~-----~~-~~~~~~l~~~~~~Lkp---gG~li~~~~~ 144 (196)
T PRK07402 110 PDRVCIE-----GG-RPIKEILQAVWQYLKP---GGRLVATASS 144 (196)
T ss_pred CCEEEEE-----CC-cCHHHHHHHHHHhcCC---CeEEEEEeec
Confidence 5665542 12 2346789999999999 8998887654
No 80
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.97 E-value=2.7e-09 Score=82.40 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=76.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-C--CC--CccEEEehhhh
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-A--IP--PADAVLLKWIL 265 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~--~p--~~D~~~~~~vl 265 (306)
.+|||+|||+|.++..+++.+ ..+++++|+ |..++.++. ..++++++.+|+++ . .+ .+|+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 888888776 45789999999987 3 33 59999998887
Q ss_pred ccCCc------hHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 266 HDWND------EECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 266 h~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+.... +....+++++.+.|+| ||.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEE
Confidence 75421 2346789999999999 8888876
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.97 E-value=6e-09 Score=89.20 Aligned_cols=97 Identities=12% Similarity=0.229 Sum_probs=74.9
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEeccCCCC---------CC--CccEEEe
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------IP--PADAVLL 261 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~p--~~D~~~~ 261 (306)
+.+..+|||||||+|.++..++++. +..+++++|+.++. ...+|+++.+|+.++ .+ .+|+|++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4566799999999999999999986 45689999996532 235699999999883 32 4999999
Q ss_pred hhhhccCCchH---------HHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 262 KWILHDWNDEE---------CVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 262 ~~vlh~~~d~~---------~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
..+.|...++. ...+|+.+++.|+| ||++++...
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~ 166 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF 166 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence 77666543321 24689999999999 899998643
No 82
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.96 E-value=4.4e-09 Score=95.18 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=71.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c------CCCeEEEeccCCCCCCCccEEEehhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D------LANLKYVGGDMFEAIPPADAVLLKWI 264 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~------~~rv~~~~~d~~~~~p~~D~~~~~~v 264 (306)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . ..+++|...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 468999999 888888876 1 24688999997653336999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCC
Q 021867 265 LHDWNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p 286 (306)
+|+++++....+++.+.+ +.+
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~ 242 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE 242 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC
Confidence 999998877778888875 444
No 83
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.95 E-value=7.4e-09 Score=76.76 Aligned_cols=93 Identities=23% Similarity=0.349 Sum_probs=76.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCC----CCccEEEehhhhccC
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI----PPADAVLLKWILHDW 268 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~----p~~D~~~~~~vlh~~ 268 (306)
+++|+|||.|.++..+++ .+..+++++|+ +..+..+++ ...++++..+|+.+.. +.+|++++..+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 77889999998 566666652 4678999999998832 259999999999875
Q ss_pred CchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 269 NDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.+....+++.+.+.|+| +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 44567899999999999 8888765
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.95 E-value=1.2e-08 Score=90.85 Aligned_cols=98 Identities=22% Similarity=0.353 Sum_probs=77.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC--CccEEEehhhhc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVLLKWILH 266 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~~~~~~vlh 266 (306)
.+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ...+++++.+|++++.+ .||+|++.-...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567899999999999999999999999999999 777887776 24689999999988654 599998843221
Q ss_pred ------cCCc------------------hHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 267 ------DWND------------------EECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 267 ------~~~d------------------~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
...+ +....+++++.+.|+| ||++++
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~ 236 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL 236 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE
Confidence 1111 1235688999999999 888876
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.95 E-value=8.7e-09 Score=84.88 Aligned_cols=102 Identities=24% Similarity=0.313 Sum_probs=83.1
Q ss_pred HhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC---CCCCcc
Q 021867 187 IHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIPPAD 257 (306)
Q Consensus 187 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p~~D 257 (306)
++++. ..+..+++|||||+|..+.+++..+|+.+++.+|. ++.++..++ ..++++++.+|..+ ..|.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 34444 56788999999999999999999999999999998 667666555 68999999999877 344699
Q ss_pred EEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 258 AVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 258 ~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
.+|+.--- + ...+|+.+.+.|+| ||+|++.-..
T Consensus 105 aiFIGGg~---~---i~~ile~~~~~l~~---ggrlV~nait 137 (187)
T COG2242 105 AIFIGGGG---N---IEEILEAAWERLKP---GGRLVANAIT 137 (187)
T ss_pred EEEECCCC---C---HHHHHHHHHHHcCc---CCeEEEEeec
Confidence 99997752 1 24689999999999 8998875443
No 86
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.89 E-value=2.2e-08 Score=88.55 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=77.2
Q ss_pred HHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhc---hh-c--CCCeEEEeccCCC-CC-CC
Q 021867 185 VVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGL---ES-D--LANLKYVGGDMFE-AI-PP 255 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a---~~-~--~~rv~~~~~d~~~-~~-p~ 255 (306)
.+...++ --..++|||||||+|+++..++++.|. .++++|- +.-..+. ++ . ..++.+.+..+.+ |. ..
T Consensus 106 rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 106 RLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 3444443 234689999999999999999999765 5899996 2222222 22 2 2334444333333 22 25
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
||+|++.-||+|..++ ...|+.+++.|+| ||.|++-..+++.+
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGD 225 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCC
Confidence 9999999999998887 5789999999999 78777766666544
No 87
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.88 E-value=2.5e-08 Score=86.72 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=77.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC-C--C-CCccEEEehhhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-A--I-PPADAVLLKWIL 265 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~--~-p~~D~~~~~~vl 265 (306)
.+..+|||||||+|.++..+++. ..+++++|. +..++.+++ ...++++...|+.+ + . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35678999999999999988876 467999998 677777664 23467888887765 2 2 259999999999
Q ss_pred ccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 266 HDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
++.++. ..+|+++.+.|+| ||++++...
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTL 152 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC---CcEEEEEec
Confidence 988875 4689999999999 899887653
No 88
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.87 E-value=1.9e-08 Score=85.37 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=75.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC--C-C-CCccEEEe
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--A-I-PPADAVLL 261 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~-~-p~~D~~~~ 261 (306)
.....+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ ..++++++.+|+.+ + . +.+|.+++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5567899999999999999998764 6679999999 888887765 25789999999876 2 2 35999988
Q ss_pred hhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 262 KWILHDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 262 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
.. .......+|+.+.+.|+| ||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence 53 222345789999999999 899876
No 89
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.87 E-value=1e-07 Score=84.96 Aligned_cols=97 Identities=13% Similarity=0.237 Sum_probs=78.4
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCC----CCeEEEecc-hHHHHhchh-----------------------------
Q 021867 196 GLNSLVDVGGGIGT----VAKAIAKAFP----NLECTDFDL-PHVVNGLES----------------------------- 237 (306)
Q Consensus 196 ~~~~vlDvGgG~G~----~~~~l~~~~p----~~~~~~~Dl-~~~~~~a~~----------------------------- 237 (306)
+.-+|...||++|. +++.+.+..+ +.++++.|+ +.+++.|++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999993 3444455433 467999999 888888775
Q ss_pred -------cCCCeEEEeccCCC-CCC---CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 238 -------DLANLKYVGGDMFE-AIP---PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 238 -------~~~rv~~~~~d~~~-~~p---~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
...+|+|..+|..+ +.| .+|+|+++++|.+++++...+++++++++|+| ||.|++
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~l 260 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFA 260 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 11567899999998 443 59999999999999999999999999999999 898776
No 90
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=88.29 Aligned_cols=101 Identities=10% Similarity=0.212 Sum_probs=82.6
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC---CCC--CccEEEe
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP--PADAVLL 261 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p--~~D~~~~ 261 (306)
.....+|||+|||+|..+..+++++++++++++++ +.+.+.|++ ..+||++++.|+.+ ..+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34488999999999999999999999999999999 788888877 68999999999977 222 4899998
Q ss_pred hhhhccCCch----------------HHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 262 KWILHDWNDE----------------ECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 262 ~~vlh~~~d~----------------~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
+=..+.-++. ....+++.+.+.|+| ||++.++-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~ 170 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVH 170 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEe
Confidence 7666544333 125689999999999 89988763
No 91
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.86 E-value=1.2e-09 Score=70.88 Aligned_cols=49 Identities=53% Similarity=0.939 Sum_probs=42.2
Q ss_pred HHHHHHHHhCcccccccCC-CCCCHHHHHHhcC-CCCCCcchHHHHHHHHH
Q 021867 30 MSLKCAVELGIPDIINKHG-KPMTLNELVSALT-INPSKTRCVYRLMRILI 78 (306)
Q Consensus 30 ~~l~~a~~lglfd~L~~~~-~~~t~~eLA~~~g-~~~~~~~~l~rlLr~L~ 78 (306)
.+|++|++|||||.|.++| +++|++||+.+++ .+|.++..++|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999886 8999999999999 66656779999999985
No 92
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.86 E-value=2.7e-08 Score=92.46 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=75.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCC-CC---CccEEEehhhhc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA-IP---PADAVLLKWILH 266 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~-~p---~~D~~~~~~vlh 266 (306)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|++++ .+ .+|+|+++-.-.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446899999999999999999999999999999 889988876 345899999999873 32 489999844221
Q ss_pred cCC---------------------c--hHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 267 DWN---------------------D--EECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 267 ~~~---------------------d--~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
.-. | +--.++++.+.+.|+| ||.++ +|.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEi 381 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEH 381 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEE
Confidence 100 0 1124678888899999 78765 443
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=98.86 E-value=3.4e-08 Score=82.67 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=75.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCC-eEEEeccCCCCCC--CccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLAN-LKYVGGDMFEAIP--PADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~r-v~~~~~d~~~~~p--~~D~~~~~~v 264 (306)
.+..+|||+|||+|.++..++++ ..+++++|+ +.+++.+++ ..++ ++++.+|+.++.+ .+|++++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45678999999999999999988 578999999 788887765 2233 8999999988554 4999998655
Q ss_pred hccCC-------------------chHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 265 LHDWN-------------------DEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 265 lh~~~-------------------d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
++... ......+++++.+.|+| ||+++++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~ 149 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQS 149 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEc
Confidence 43211 11235679999999999 888887654
No 94
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.85 E-value=1.6e-08 Score=85.49 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=68.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCC---CCC--CccEEEehhhhccC
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PADAVLLKWILHDW 268 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~D~~~~~~vlh~~ 268 (306)
+...+|||||||+|.++..+++.. ..+++++|+ +++++.+++ .+++++.+|+.+ +.+ .||+|++..++|+.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 355799999999999999888653 567899998 777777763 468899898865 233 49999999999999
Q ss_pred CchHHHHHHHHHHHhcCC
Q 021867 269 NDEECVKILKKCKEAVTS 286 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p 286 (306)
++. ..+|+++.+.+++
T Consensus 89 ~d~--~~~l~e~~r~~~~ 104 (194)
T TIGR02081 89 RNP--EEILDEMLRVGRH 104 (194)
T ss_pred cCH--HHHHHHHHHhCCe
Confidence 875 4678888776654
No 95
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=7e-08 Score=83.04 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=86.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEeccCCC-CC--
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFE-AI-- 253 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~-~~-- 253 (306)
....+|++.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ...+|++.++|+|+ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999987 567999999 666766422 24589999999998 32
Q ss_pred ---CCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 254 ---PPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 254 ---p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
..+|+|+=+-+|+.++++...+..+.+.+.|+| ||+++++..-.++
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~~ 168 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHDK 168 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecCC
Confidence 148999999999999999999999999999999 8999888765443
No 96
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.85 E-value=2.1e-08 Score=86.64 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=77.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c-CCCeEEEeccCCC-C--C-CCccEEEehhhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D-LANLKYVGGDMFE-A--I-PPADAVLLKWIL 265 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~-~~rv~~~~~d~~~-~--~-p~~D~~~~~~vl 265 (306)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ . ..++++...|+.+ + . ..+|++++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999988654 5899998 677777765 1 2268899888765 2 2 259999999999
Q ss_pred ccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 266 HDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
|+..+.. .+|+++++.|+| ||.+++.+.
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTI 150 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEEec
Confidence 9988764 789999999999 899887653
No 97
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.84 E-value=2e-08 Score=84.81 Aligned_cols=98 Identities=11% Similarity=0.235 Sum_probs=71.5
Q ss_pred CCCeEEEecCCccH----HHHHHHHH----CC-CCeEEEecc-hHHHHhchh----------------------------
Q 021867 196 GLNSLVDVGGGIGT----VAKAIAKA----FP-NLECTDFDL-PHVVNGLES---------------------------- 237 (306)
Q Consensus 196 ~~~~vlDvGgG~G~----~~~~l~~~----~p-~~~~~~~Dl-~~~~~~a~~---------------------------- 237 (306)
+.-+|.-.||++|. +++.+.+. .+ +.++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 67899999999993 33444441 22 468999999 888998875
Q ss_pred -----cCCCeEEEeccCCC-CCC--CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 238 -----DLANLKYVGGDMFE-AIP--PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 238 -----~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
..++|+|..+|..+ +.+ .+|+|+++|||-+++++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 24689999999999 322 59999999999999999999999999999999 8888873
No 98
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=2.2e-08 Score=85.08 Aligned_cols=109 Identities=17% Similarity=0.309 Sum_probs=80.2
Q ss_pred HHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------cC--------------
Q 021867 186 VIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------DL-------------- 239 (306)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~-------------- 239 (306)
.++.+...+-.+..+|||||.+|.++..+++.|-...++++|+ +..+..|++ ..
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 3444443356788999999999999999999999999999999 777888876 00
Q ss_pred ---------------CCeEE-------EeccCCC-CCCCccEEEehhhh----ccCCchHHHHHHHHHHHhcCCCCCCcE
Q 021867 240 ---------------ANLKY-------VGGDMFE-AIPPADAVLLKWIL----HDWNDEECVKILKKCKEAVTSDDKKGK 292 (306)
Q Consensus 240 ---------------~rv~~-------~~~d~~~-~~p~~D~~~~~~vl----h~~~d~~~~~iL~~~~~~L~p~~~gg~ 292 (306)
+++.| ..-||.+ ..|.||+|++-.|- -+|.|+-.+++++++++.|.| ||.
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---gGi 204 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---GGI 204 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---CcE
Confidence 12222 2334554 35579999775443 469999999999999999999 555
Q ss_pred EEEEee
Q 021867 293 VIIIDM 298 (306)
Q Consensus 293 lli~e~ 298 (306)
| |+|+
T Consensus 205 L-vvEP 209 (288)
T KOG2899|consen 205 L-VVEP 209 (288)
T ss_pred E-EEcC
Confidence 5 4543
No 99
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=86.23 Aligned_cols=101 Identities=20% Similarity=0.356 Sum_probs=87.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCC--CeEEEecc-hHHHHhchh----cCCCeEEEeccCCCC-----CC--CccEEEehh
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA-----IP--PADAVLLKW 263 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~-----~p--~~D~~~~~~ 263 (306)
.+|++||||.|....-|++..|+ +++..+|. |..++..++ ...|+.-...|+..| .. ..|++++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999999 89999998 888888776 457777777777653 11 489999999
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
||...+.++....++++++.|+| ||.|+..|+-.-
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~ 187 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRY 187 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccc
Confidence 99999999999999999999999 999999987543
No 100
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.83 E-value=3.8e-08 Score=86.63 Aligned_cols=93 Identities=22% Similarity=0.321 Sum_probs=68.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCCCccEEEehhhhcc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVLLKWILHD 267 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~~~~~~vlh~ 267 (306)
....+|||||||+|.++..+++..+ .+++++|+ |.+++.|++ ..+++.+..+|. .||+++++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4678999999999999988776554 36999999 888888776 224455444432 5899987532
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
.+....+++++.+.|+| ||++++.+....
T Consensus 189 --~~~~~~l~~~~~~~Lkp---gG~lilsgi~~~ 217 (250)
T PRK00517 189 --ANPLLELAPDLARLLKP---GGRLILSGILEE 217 (250)
T ss_pred --HHHHHHHHHHHHHhcCC---CcEEEEEECcHh
Confidence 22345789999999999 899999876543
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.83 E-value=3.5e-08 Score=88.69 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=72.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC-CccEEEehhhhc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP-PADAVLLKWILH 266 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p-~~D~~~~~~vlh 266 (306)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++.+...+.....+ .||++++....
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 34589999999999999888764 4458999999 788888776 34567777776443223 69999886443
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+....+++++++.|+| ||++++....
T Consensus 236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi~ 261 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKP---GGWLILSGIL 261 (288)
T ss_pred ----HHHHHHHHHHHHHcCC---CcEEEEEeCc
Confidence 2235789999999999 8999987754
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.83 E-value=5.1e-08 Score=83.67 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=70.9
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC---CccEEEehhh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---PADAVLLKWI 264 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---~~D~~~~~~v 264 (306)
..+..+|||||||+|.++..+++... +++++|. +.+++.+++ ...++++..+|+.+..+ .||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45678999999999999988887753 7889998 777777765 34569999999877433 5999999876
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
++++ .+.+.+.|+| ||++++.-
T Consensus 154 ~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 154 APEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred chhh--------hHHHHHhcCC---CcEEEEEE
Confidence 6544 3456788999 89888753
No 103
>PRK14967 putative methyltransferase; Provisional
Probab=98.81 E-value=4.8e-08 Score=84.53 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=74.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCCCC--CccEEEehhhhc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVLLKWILH 266 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~~~~~~vlh 266 (306)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..-+++++.+|+.+..+ .||+|++.-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 344579999999999999998876 3348999999 777877665 22368899999987544 599999864322
Q ss_pred cCCc-------------------hHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 267 DWND-------------------EECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 267 ~~~d-------------------~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
.-++ .....+++++.+.|+| ||+++++..-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEec
Confidence 1111 1134678999999999 8999986443
No 104
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.79 E-value=3.5e-08 Score=95.19 Aligned_cols=96 Identities=18% Similarity=0.306 Sum_probs=74.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC--CccEEEehh----
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVLLKW---- 263 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~~~~~~---- 263 (306)
..+|||+|||+|.++..++..+|+.+++++|+ +.+++.|++ ..++|+++.+|++++.+ .||+|+++=
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 788888876 34689999999988554 599999832
Q ss_pred ----------hhccCCc----------hHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 264 ----------ILHDWND----------EECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 264 ----------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
+..+.|. +.-.++++.+.+.|+| ||++++
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l 267 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL 267 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 1111110 1234578899999999 888765
No 105
>PRK00811 spermidine synthase; Provisional
Probab=98.78 E-value=4e-08 Score=88.03 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=76.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----------cCCCeEEEeccCCC--CC--CCccEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----------DLANLKYVGGDMFE--AI--PPADAV 259 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~~rv~~~~~d~~~--~~--p~~D~~ 259 (306)
+++++||+||||.|..+..+++..+..+++++|+ +.+++.+++ ..+|++++.+|..+ .. ..||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4678999999999999999997655568999999 889988886 15789999999876 22 259999
Q ss_pred EehhhhccCCchH--HHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 260 LLKWILHDWNDEE--CVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 260 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
++...-+..+... ...+++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9864433222211 25678999999999 8887763
No 106
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.77 E-value=9.6e-08 Score=80.29 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=78.1
Q ss_pred hcCCC-eEEEecCCccHHHHHHHHHCCCCeEEEecchHH-----HHhchh-cCCCe-EEEeccCCCC---CC--------
Q 021867 194 FEGLN-SLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHV-----VNGLES-DLANL-KYVGGDMFEA---IP-------- 254 (306)
Q Consensus 194 ~~~~~-~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~-----~~~a~~-~~~rv-~~~~~d~~~~---~p-------- 254 (306)
+.... +||+||+|+|..+..+++.+|+++.---|.... .+...+ ..+++ .-+.-|+.++ ++
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 34444 599999999999999999999998766676222 222222 22232 2233455442 21
Q ss_pred CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 255 PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 255 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
.+|+|++.|++|-.+-+.+..+++.+.+.|++ ||.|++.-++.-+
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRD 146 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccC
Confidence 48999999999999999899999999999999 9999998877544
No 107
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.75 E-value=7.1e-08 Score=84.93 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=73.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEeccCCCCCC-----CccEEEehhhhcc-
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFEAIP-----PADAVLLKWILHD- 267 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~~~p-----~~D~~~~~~vlh~- 267 (306)
..+|||+|||+|.++..+++.+|..+++++|+ +.+++.|++ ...++++..+|+++..+ .+|++++.=....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888888886 22336899999987432 4899887532211
Q ss_pred -----CCc------------------hHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 268 -----WND------------------EECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 268 -----~~d------------------~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.++ +-...+++.+.+.|+| ||++++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 111 1124788888999999 8887754
No 108
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.74 E-value=3.6e-08 Score=83.30 Aligned_cols=103 Identities=20% Similarity=0.358 Sum_probs=74.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---CCC-eEEEeccCCC--CCC-CccEEEehhhhc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---LAN-LKYVGGDMFE--AIP-PADAVLLKWILH 266 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---~~r-v~~~~~d~~~--~~p-~~D~~~~~~vlh 266 (306)
+..+.||.|+|.|+.+..++-.+- -++-++|. +..++.|++ . ..+ .++.+..+.+ |.+ .||+|++-+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 568999999999999998864431 24666665 788888886 2 234 4555555544 443 599999999999
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
+++|++.+.+|++|+++|+| +|.|+|=|.+-..
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSS 166 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESS
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCC
Confidence 99999999999999999999 8999998887654
No 109
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.73 E-value=1.3e-07 Score=79.60 Aligned_cols=95 Identities=17% Similarity=0.311 Sum_probs=71.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEeccCCCC---------CC--CccEEEe
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------IP--PADAVLL 261 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~p--~~D~~~~ 261 (306)
.....+|||+|||+|.++..+++++ +..+++++|+.+.. ..++++++.+|+.++ .+ .+|+|++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 4567899999999999999999887 56789999995532 235688999998762 23 4999998
Q ss_pred hhhhc---cCCc------hHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 262 KWILH---DWND------EECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 262 ~~vlh---~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
....| .|.- +....+|+++++.|+| ||++++.
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 54322 1221 1235789999999999 8998885
No 110
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=9.4e-08 Score=79.42 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=78.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeE-EEeccCCC-C-CC--CccEEEehhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLK-YVGGDMFE-A-IP--PADAVLLKWI 264 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~-~~~~d~~~-~-~p--~~D~~~~~~v 264 (306)
.-..||+||||+|..-. +-.--|..+++.+|. +.|-+.+.+ ....++ |+.++..+ | .+ ++|.|+...+
T Consensus 76 ~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 44568999999997542 222335678999998 777776655 455666 88888777 4 33 6999999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCCC
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENKK 304 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (306)
|.-..| .++.|+++++.|+| ||+++++|.+..+.+
T Consensus 155 LCSve~--~~k~L~e~~rlLRp---gG~iifiEHva~~y~ 189 (252)
T KOG4300|consen 155 LCSVED--PVKQLNEVRRLLRP---GGRIIFIEHVAGEYG 189 (252)
T ss_pred EeccCC--HHHHHHHHHHhcCC---CcEEEEEecccccch
Confidence 975555 57999999999999 999999998876543
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=98.71 E-value=9.6e-08 Score=83.98 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCC-C-CccEEEehhhhccCCchHH
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAI-P-PADAVLLKWILHDWNDEEC 273 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~-p-~~D~~~~~~vlh~~~d~~~ 273 (306)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++..++++++.+|+++.. . .+|+|++.-.++..+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46899999999999999999888889999999 8888888875568999999999833 2 5999999888876543321
Q ss_pred ------------------HHHHHHHHHhcCCCCCCcEEEEE
Q 021867 274 ------------------VKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 274 ------------------~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.++++.+...|+| +|.+.++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~ 182 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA 182 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE
Confidence 3566777788888 6766554
No 112
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.71 E-value=6.2e-08 Score=83.32 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=83.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEeccCCC-CCC
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFE-AIP 254 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~-~~p 254 (306)
.....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..++|++.++|||+ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 455679999999999999999987 568999999 777777622 24679999999999 322
Q ss_pred ---CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 255 ---PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 255 ---~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
.||+|+=+-.|+-++.+...+-.+.+.+.|+| ||+++++-...+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~ 160 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQ 160 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-C
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCC
Confidence 49999999999999999999999999999999 8995555544443
No 113
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.70 E-value=6.7e-08 Score=80.17 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=68.3
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCC---CCC--CccEEEehhhhcc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PADAVLLKWILHD 267 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~D~~~~~~vlh~ 267 (306)
.+..++|||+|||.|.++..|.+. .++++.++|+ ++-+..+ ....+.++.+|+.+ .+| +||.|+++.+|..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~c--v~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAAC--VARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHH--HHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 356799999999999999888875 6899999998 4434433 35678899999977 355 5999999999998
Q ss_pred CCchHHHHHHHHHHHhcC
Q 021867 268 WNDEECVKILKKCKEAVT 285 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~ 285 (306)
...++ ++|+++.|+-+
T Consensus 88 ~~~P~--~vL~EmlRVgr 103 (193)
T PF07021_consen 88 VRRPD--EVLEEMLRVGR 103 (193)
T ss_pred HhHHH--HHHHHHHHhcC
Confidence 87764 67888865533
No 114
>PLN02366 spermidine synthase
Probab=98.69 E-value=1.2e-07 Score=85.55 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=73.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEecc-hHHHHhchh---------cCCCeEEEeccCCC---CCC--CccE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP--PADA 258 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p--~~D~ 258 (306)
+++++||+||||.|..+.++++. |. .+++++|+ +.+++.+++ ..+|++++.+|.++ ..+ .||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 56889999999999999999865 55 57999999 778888887 14699999999754 232 5999
Q ss_pred EEehhhhccCCch--HHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 259 VLLKWILHDWNDE--ECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 259 ~~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
|++-..-+.-+.. -...+++.+++.|+| ||.+++
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 9984433221211 124689999999999 888865
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.68 E-value=1.6e-07 Score=85.28 Aligned_cols=93 Identities=15% Similarity=0.290 Sum_probs=71.9
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCC---CCccEEEehh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---PPADAVLLKW 263 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p~~D~~~~~~ 263 (306)
..+..+|||||||+|.++..+++..+. .+++++|. +++++.|++ ..++++++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 456689999999999999999998864 47899998 788887765 3568999999987632 2599999876
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
.+++.+ ..+.+.|+| ||++++..
T Consensus 158 g~~~ip--------~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEVP--------ETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred chHHhH--------HHHHHhcCC---CCEEEEEe
Confidence 554432 345678999 89988743
No 116
>PRK01581 speE spermidine synthase; Validated
Probab=98.68 E-value=1.1e-07 Score=86.83 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=76.4
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------cCCCeEEEeccCCCC---CC-Cc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEA---IP-PA 256 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~---~p-~~ 256 (306)
..++.+||+||||.|..+..+++..+..+++++|+ +.|++.|++ ..+|++++.+|..+- .+ .|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 35678999999999999999997655668999999 888998884 257999999998862 22 59
Q ss_pred cEEEehhhhcc---CCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 257 DAVLLKWILHD---WNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 257 D~~~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
|+|++...-.. ...-....+++.+++.|+| ||.+++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEec
Confidence 99998732100 0111125689999999999 88887753
No 117
>PTZ00146 fibrillarin; Provisional
Probab=98.67 E-value=1.8e-07 Score=83.06 Aligned_cols=106 Identities=12% Similarity=0.145 Sum_probs=77.0
Q ss_pred hHHHHHhhchhh-hcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecch-H----HHHhchhcCCCeEEEeccCCCCC-
Q 021867 182 ATRVVIHKCKDV-FEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDLP-H----VVNGLESDLANLKYVGGDMFEAI- 253 (306)
Q Consensus 182 ~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl~-~----~~~~a~~~~~rv~~~~~d~~~~~- 253 (306)
++..++..++.. +....+|||+|||+|.++..+++... .-+++.+|+. . +++.++ ...+|.++.+|+..+.
T Consensus 117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQK 195 (293)
T ss_pred HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhh
Confidence 344454444421 45668999999999999999999864 4589999984 3 455554 3478999999987642
Q ss_pred -----CCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 254 -----PPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 254 -----p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
+.+|+|++.... +| +...++.++++.|+| ||+++|
T Consensus 196 y~~~~~~vDvV~~Dva~---pd-q~~il~~na~r~LKp---GG~~vI 235 (293)
T PTZ00146 196 YRMLVPMVDVIFADVAQ---PD-QARIVALNAQYFLKN---GGHFII 235 (293)
T ss_pred hhcccCCCCEEEEeCCC---cc-hHHHHHHHHHHhccC---CCEEEE
Confidence 358999887742 33 344567789999999 899998
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.64 E-value=8.4e-07 Score=77.29 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=75.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC---------CCCc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---------IPPA 256 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---------~p~~ 256 (306)
..++++|||||||+|..+..+++..| +.+++.+|. ++.++.|++ ..++|+++.+|..+- .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45688999999999999999998765 679999999 788888776 467899999999762 1259
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
|++++- -..+.-...+..+.+.|+| ||.|++-+
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG~ii~dn 178 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GGIIAFDN 178 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CeEEEEEc
Confidence 999884 2334445788999999999 77655433
No 119
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.63 E-value=5.2e-07 Score=79.55 Aligned_cols=97 Identities=11% Similarity=0.214 Sum_probs=82.4
Q ss_pred CCCeEEEecCCcc----HHHHHHHHHCC-----CCeEEEecc-hHHHHhchh----------------------------
Q 021867 196 GLNSLVDVGGGIG----TVAKAIAKAFP-----NLECTDFDL-PHVVNGLES---------------------------- 237 (306)
Q Consensus 196 ~~~~vlDvGgG~G----~~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~---------------------------- 237 (306)
++-+|.-.||++| .+++.+.+.+| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 5789999999999 46677777886 468899999 788888764
Q ss_pred ------cCCCeEEEeccCCCCC--C-CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 238 ------DLANLKYVGGDMFEAI--P-PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 238 ------~~~rv~~~~~d~~~~~--p-~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
....|.|..+|..++. + .+|+|+|+|||-+++.+...+++++.+..|+| ||.|+|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 2356899999999843 3 59999999999999999889999999999999 899888
No 120
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.62 E-value=2.4e-07 Score=82.52 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=75.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEeccCCC--C-CC-CccEEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE--A-IP-PADAVL 260 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~--~-~p-~~D~~~ 260 (306)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ ..+|++++.+|.++ . .+ .||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999998766678999999 788888776 13689999998865 1 12 599999
Q ss_pred ehhhhccCCchH--HHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 261 LKWILHDWNDEE--CVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 261 ~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+...-+.-+... ...+++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 876533222222 35788999999999 8888875
No 121
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.62 E-value=1.4e-07 Score=80.34 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=69.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEE-------eccCCCCC--C-CccEEEehh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYV-------GGDMFEAI--P-PADAVLLKW 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~-------~~d~~~~~--p-~~D~~~~~~ 263 (306)
++...++|||||+|..++.++..|.+ +|+.|. +.+++.|++ ..++++. ..++..-. + +.|+|++..
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k-~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKK-HPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhc-CCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 45558999999999888888877664 788899 899999986 2222221 12222211 2 489999999
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
++|.++-+ ++.+.++++|++ +||.+.|.-+
T Consensus 109 a~HWFdle---~fy~~~~rvLRk--~Gg~iavW~Y 138 (261)
T KOG3010|consen 109 AVHWFDLE---RFYKEAYRVLRK--DGGLIAVWNY 138 (261)
T ss_pred hHHhhchH---HHHHHHHHHcCC--CCCEEEEEEc
Confidence 99977765 689999999998 2667777544
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=3.3e-07 Score=81.89 Aligned_cols=97 Identities=25% Similarity=0.395 Sum_probs=74.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC-CccEEEehhh--hcc--
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVLLKWI--LHD-- 267 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~~~~~~v--lh~-- 267 (306)
+|||+|||+|..+..++.++|++++++.|+ |..++.|++ ...++.++.+|.|++.+ .||+++++=. -..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888888876 22777777789999766 5899877421 111
Q ss_pred ---------------CCc----hHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 268 ---------------WND----EECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 268 ---------------~~d----~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+.. +...+++..+.+.|+| |.++++|.-
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g 239 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIG 239 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEEC
Confidence 011 2346788889999998 455555543
No 123
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.59 E-value=6.4e-07 Score=82.07 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=75.1
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-CCC--CccEEEehhh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVLLKWI 264 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~~~~~~v 264 (306)
+.+..+|||+|||+|.++.+.+.. ..+++++|+ +.++..++. ..+.+.+..+|+.+ +.+ .+|++++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 456679999999999999887654 578999999 778887665 23448999999988 553 5899998533
Q ss_pred hcc-------CCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 265 LHD-------WNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 265 lh~-------~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
... ...+...++|+++++.|+| ||+++++-+
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~ 295 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVP 295 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEc
Confidence 211 1112346899999999999 899887654
No 124
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.57 E-value=1.9e-07 Score=76.58 Aligned_cols=74 Identities=18% Similarity=0.326 Sum_probs=62.2
Q ss_pred EEecc-hHHHHhchh--------cCCCeEEEeccCCC-CCC--CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCc
Q 021867 224 TDFDL-PHVVNGLES--------DLANLKYVGGDMFE-AIP--PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKG 291 (306)
Q Consensus 224 ~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg 291 (306)
+++|. +.|++.|++ ...+|+++.+|+.+ |.+ .||++++..++|+++|. .+.|++++++|+| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 36788 889998864 13479999999988 665 49999999999999875 5789999999999 99
Q ss_pred EEEEEeeecCC
Q 021867 292 KVIIIDMIREN 302 (306)
Q Consensus 292 ~lli~e~~~~~ 302 (306)
+++|.|...++
T Consensus 76 ~l~i~d~~~~~ 86 (160)
T PLN02232 76 RVSILDFNKSN 86 (160)
T ss_pred EEEEEECCCCC
Confidence 99999987654
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.57 E-value=2.7e-07 Score=78.73 Aligned_cols=101 Identities=16% Similarity=0.270 Sum_probs=74.0
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC-
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP- 254 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p- 254 (306)
...+++.++ +.+..+|||||||+|+++..++.... .-+++.+|. +..++.|++ ...+|+++.+|.....+
T Consensus 61 ~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 61 VARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 344566666 67789999999999999999998754 446889998 888888887 46689999999887544
Q ss_pred --CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 255 --PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 255 --~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.||.|++.......|. ...+.|++ ||+|++.
T Consensus 139 ~apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~p 171 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAP 171 (209)
T ss_dssp G-SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEE
T ss_pred CCCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEE
Confidence 5999999887754443 35566898 8999874
No 126
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.56 E-value=3.6e-07 Score=75.51 Aligned_cols=82 Identities=15% Similarity=0.352 Sum_probs=61.3
Q ss_pred HHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCC-CCCC--cc
Q 021867 185 VVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP--AD 257 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~--~D 257 (306)
.+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.++ +|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 3455555 456679999999999999999988 468999999 678887776 24689999999998 5553 78
Q ss_pred EEEehhhhccCCch
Q 021867 258 AVLLKWILHDWNDE 271 (306)
Q Consensus 258 ~~~~~~vlh~~~d~ 271 (306)
.++.. ..++.+.+
T Consensus 80 ~vi~n-~Py~~~~~ 92 (169)
T smart00650 80 KVVGN-LPYNISTP 92 (169)
T ss_pred EEEEC-CCcccHHH
Confidence 77654 44444433
No 127
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.55 E-value=3.7e-07 Score=74.46 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=73.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCC--C-CccEEEehhhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI--P-PADAVLLKWIL 265 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~--p-~~D~~~~~~vl 265 (306)
...+|||+|||.|+++..|++.-=.-+.+++|. +..++.|+. ..+.|+|+..|+++|. + .||+|+=.-.+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 334999999999999999998765556888998 667776664 4566999999999962 2 48888655544
Q ss_pred -----c-cCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 266 -----H-DWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 266 -----h-~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
| +-++.....-+..+.+.|+| ||.++|.-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItS 181 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITS 181 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCC---CcEEEEEe
Confidence 3 22333323457788888999 89998864
No 128
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.55 E-value=8.4e-07 Score=77.84 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=83.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC--CeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC------CCCccEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA------IPPADAV 259 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~------~p~~D~~ 259 (306)
.++.+||||.||.|.+....+..+|. .++.+.|. |..++..++ ..+-++|..+|.|+. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999998 68899998 666777665 455569999999983 3457999
Q ss_pred EehhhhccCCchHHHH-HHHHHHHhcCCCCCCcEEEEEe
Q 021867 260 LLKWILHDWNDEECVK-ILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 260 ~~~~vlh~~~d~~~~~-iL~~~~~~L~p~~~gg~lli~e 297 (306)
+.+-+.-.++|.+.++ .|+.+++++.| ||.|+-.-
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcC
Confidence 9999999999977555 69999999999 88887654
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=9.9e-07 Score=83.68 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=80.1
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCC---CC-
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP- 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p- 254 (306)
..++..++ .....+|||+|||+|..+..+++..++.+++++|. +.+++.+++ ..-+++++.+|+.+. .+
T Consensus 234 ~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 33344444 45668999999999999999999998889999999 788888766 223478999999862 12
Q ss_pred -CccEEEehhh------hc-------cCCchH-------HHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 255 -PADAVLLKWI------LH-------DWNDEE-------CVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 255 -~~D~~~~~~v------lh-------~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
.||.|++.-. +. .+..++ ..++|+++.+.|+| ||++++...
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystc 373 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATC 373 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeC
Confidence 4999985221 11 112221 24789999999999 899988764
No 130
>PHA03412 putative methyltransferase; Provisional
Probab=98.53 E-value=7.1e-07 Score=76.84 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCeEEEecCCccHHHHHHHHHC---CCCeEEEecc-hHHHHhchhcCCCeEEEeccCCC-CCC-CccEEEehhhhccCC-
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAF---PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVLLKWILHDWN- 269 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~~~~~~vlh~~~- 269 (306)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++...++.++.+|+.. +.. .||+|+.+=..+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 3568999999 88888888755679999999987 433 599999876665332
Q ss_pred -c--------hHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 270 -D--------EECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 270 -d--------~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
+ .-...+++++.+.+++ |.+|+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 1 1234588999987776 66633
No 131
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.53 E-value=7.2e-07 Score=84.60 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=81.4
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC-C--
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-I-- 253 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~-- 253 (306)
..++..++ .....+|||+|||+|..+..+++..++.+++++|. +..++.+++ ...++++..+|...+ .
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 33344444 45568999999999999999999988789999999 777777765 122455577787652 2
Q ss_pred C--CccEEEeh------hhhccCCc-------hH-------HHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 254 P--PADAVLLK------WILHDWND-------EE-------CVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 254 p--~~D~~~~~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
+ .||.|++. -+++..++ ++ ..++|+++.+.|+| ||+|++....+.
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~ 372 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVL 372 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 2 49999862 34554433 11 36799999999999 999998866553
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.5e-06 Score=73.30 Aligned_cols=100 Identities=13% Similarity=0.229 Sum_probs=78.7
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC---
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--- 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--- 254 (306)
..+++.+. ++...+||+||||+|+.+..|++.-- +++.+++ +...+.|++ ...+|.+..+|-..-+|
T Consensus 62 A~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 62 ARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 34455555 67789999999999999999998865 7888888 788888877 45669999999998555
Q ss_pred CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 255 PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 255 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
.||.|+..-.--..|+ .+.+.|++ ||++++-.-
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence 5999998877655554 34556899 999998654
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=1.1e-06 Score=83.76 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=76.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCC---CC-CccEEEeh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IP-PADAVLLK 262 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p-~~D~~~~~ 262 (306)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..++|+++.+|+.+. .+ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556899999999999999999886 6779999999 777777765 335699999999762 33 59999874
Q ss_pred hh------hc-------cCCchH-------HHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 263 WI------LH-------DWNDEE-------CVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 263 ~v------lh-------~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
-. +. .++..+ ...+|+++.+.|+| ||+|+.....
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCC
Confidence 22 11 111122 24689999999999 8998865433
No 134
>PRK03612 spermidine synthase; Provisional
Probab=98.51 E-value=5.2e-07 Score=87.54 Aligned_cols=98 Identities=18% Similarity=0.302 Sum_probs=75.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEecc-hHHHHhchh------------cCCCeEEEeccCCC---CCC-Cc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES------------DLANLKYVGGDMFE---AIP-PA 256 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~---~~p-~~ 256 (306)
+++++|||||||+|..+.++++ +|. .+++++|+ +++++.+++ ..+|++++.+|.++ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999996 565 69999999 899998876 13689999999876 223 59
Q ss_pred cEEEehhhhccCCch---HHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 257 DAVLLKWILHDWNDE---ECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 257 D~~~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
|+|++...-+..+.. -...+++.+++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999987433221111 113589999999999 8887764
No 135
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1.3e-06 Score=83.34 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=76.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCCC--CccEEEeh---
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVLLK--- 262 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~~~~~--- 262 (306)
....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..++|+++.+|+.+..+ .||+|++-
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPC 328 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCC
Confidence 4567999999999999999988764 458999999 788877765 34579999999987323 59999862
Q ss_pred ---hhh-------ccCCchH-------HHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 263 ---WIL-------HDWNDEE-------CVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 263 ---~vl-------h~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
-++ ..++.++ -.++|+++.+.|+| ||+++.....+
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~ 380 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSI 380 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCC
Confidence 111 1233222 24689999999999 89998877554
No 136
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.8e-06 Score=73.33 Aligned_cols=106 Identities=19% Similarity=0.276 Sum_probs=86.8
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHH-HCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC-CC
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAK-AFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-IP 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~p 254 (306)
..++.... .....+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|++ ..++|++..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 34455555 77889999999999999999996 677789999998 777777776 567799999999983 33
Q ss_pred -CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 255 -PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 255 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
.+|++++ |.+++. ..|.++.++|+| ||.+++.-+..+
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 6999887 678875 679999999999 899998766543
No 137
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.43 E-value=1.7e-06 Score=78.95 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------------CCCeEEEeccCCCC-----C-
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------------LANLKYVGGDMFEA-----I- 253 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------------~~rv~~~~~d~~~~-----~- 253 (306)
+..+|||+|||.|+-+.-...... ...+++|+ +..++.|++ . .-...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999999987777766532 36899999 667777765 1 12456778887752 1
Q ss_pred -C--CccEEEehhhhcc-C-CchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 254 -P--PADAVLLKWILHD-W-NDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 254 -p--~~D~~~~~~vlh~-~-~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+ .||+|-+.+.||+ + +.+.+..+|+++.+.|+| ||.++..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT 185 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGT 185 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 1 4899999999998 3 456677799999999999 8887764
No 138
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.42 E-value=2e-06 Score=72.73 Aligned_cols=95 Identities=18% Similarity=0.385 Sum_probs=68.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCC----CC--CccEEEehhhhc
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP--PADAVLLKWILH 266 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p--~~D~~~~~~vlh 266 (306)
.+||||||.|.++..+++.+|+..++++|+ ...+..+.+ ..+++.++.+|...- ++ ..|-+++.+.=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999999999999999 444444433 789999999998771 22 366666554432
Q ss_pred cCCchH-------HHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 267 DWNDEE-------CVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 267 ~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
|+... ...+|+.+++.|+| ||.|.+..
T Consensus 100 -WpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 100 -WPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred -CcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 44322 14689999999999 89887753
No 139
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.41 E-value=1.8e-06 Score=73.47 Aligned_cols=111 Identities=14% Similarity=0.235 Sum_probs=68.0
Q ss_pred HHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------------cCCCeEEEeccC
Q 021867 185 VVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------------DLANLKYVGGDM 249 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~~rv~~~~~d~ 249 (306)
.+++.+. +.....++|||||.|......+..++--+++|+++ +...+.|+. ...++++..+||
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3445555 56678999999999999998888776556999998 554444432 356789999999
Q ss_pred CC-C-----CCCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 250 FE-A-----IPPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 250 ~~-~-----~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
.+ + +.++|++++++.. |+++ ...-|++....||+ |.+++-...+.|..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCCCC
Confidence 98 3 2369999999986 5554 44556778888998 78887776666554
No 140
>PLN02672 methionine S-methyltransferase
Probab=98.41 E-value=1.4e-06 Score=89.83 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=55.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---c------------------CCCeEEEeccCCCCCC
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---D------------------LANLKYVGGDMFEAIP 254 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~------------------~~rv~~~~~d~~~~~p 254 (306)
..+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ . .+||+|+.+|++++.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888888765 1 2589999999998543
Q ss_pred ----CccEEEeh
Q 021867 255 ----PADAVLLK 262 (306)
Q Consensus 255 ----~~D~~~~~ 262 (306)
.+|+|+.+
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 38988764
No 141
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=2.7e-06 Score=80.88 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=78.2
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-C----C-C-CccEE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A----I-P-PADAV 259 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~----~-p-~~D~~ 259 (306)
.....+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ...+|+++.+|..+ + . + .||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 44568999999999999999998864 468999999 777877765 34579999999876 3 1 1 48999
Q ss_pred Eeh------hhhccCCc-------hH-------HHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 260 LLK------WILHDWND-------EE-------CVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 260 ~~~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
++. -+++..++ ++ ..++|+++.+.|+| ||+|+.....+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 973 23433332 11 25889999999999 89998776443
No 142
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.40 E-value=2.6e-06 Score=70.70 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=68.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEeccCCCCC------C-CccE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAI------P-PADA 258 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~------p-~~D~ 258 (306)
..+..+||++|||+|..++.+++.++..+++..|.+++++..+. ...+|++...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999998877789999999777776655 2577899998886632 2 4999
Q ss_pred EEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 259 VLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 259 ~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
|+.+.++|+ ++....+++.+.+.|++ ++.+++.-...
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999985 45567889999999998 67777765544
No 143
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.39 E-value=3.3e-06 Score=74.95 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=75.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-C--CCCccEEEehh-
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IPPADAVLLKW- 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p~~D~~~~~~- 263 (306)
....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...+|++...|... + .+.||.|++.-
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 45679999999999999999988754 58999999 777777665 34578999999765 2 23599998731
Q ss_pred -----hh-------ccCCchHH-------HHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 264 -----IL-------HDWNDEEC-------VKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 264 -----vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
++ ..|+.++. .++|+++.+.|+| ||+|+...-.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 11 12333322 5699999999999 89887765443
No 144
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.39 E-value=1.9e-06 Score=76.00 Aligned_cols=91 Identities=14% Similarity=0.304 Sum_probs=65.8
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCC-CCCCcc-
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPPAD- 257 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~~D- 257 (306)
..+++..+ ..+..+|||||||+|.++..++++++. ++++|. +.+++.+++ ..++++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 44555554 556789999999999999999999875 888888 777777765 24789999999988 555555
Q ss_pred -EEEehhhhccCCchHHHHHHHHHHH
Q 021867 258 -AVLLKWILHDWNDEECVKILKKCKE 282 (306)
Q Consensus 258 -~~~~~~vlh~~~d~~~~~iL~~~~~ 282 (306)
.+++++.-++++.+ ++.++.+
T Consensus 95 ~~~vvsNlPy~i~~~----il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISSP----LIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHHH----HHHHHhc
Confidence 45556655555544 4555543
No 145
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.39 E-value=2.7e-06 Score=75.21 Aligned_cols=84 Identities=15% Similarity=0.305 Sum_probs=63.5
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCC-CCCCcc
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPPAD 257 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~~D 257 (306)
...+++... .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++.+|
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 344455444 4566899999999999999999984 47899999 778877776 24789999999998 677788
Q ss_pred EEEehhhhccCCch
Q 021867 258 AVLLKWILHDWNDE 271 (306)
Q Consensus 258 ~~~~~~vlh~~~d~ 271 (306)
.|+.+- -++++.+
T Consensus 94 ~Vv~Nl-Py~i~s~ 106 (258)
T PRK14896 94 KVVSNL-PYQISSP 106 (258)
T ss_pred EEEEcC-CcccCcH
Confidence 776644 4455543
No 146
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2.6e-06 Score=75.82 Aligned_cols=104 Identities=21% Similarity=0.332 Sum_probs=71.5
Q ss_pred HHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeE----EEeccCCC-CCC-Cc
Q 021867 186 VIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLK----YVGGDMFE-AIP-PA 256 (306)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~----~~~~d~~~-~~p-~~ 256 (306)
.++.++....++.+++|+|||+|-+++..++... .+++++|+ |..++.|+. ..+.|. ....+..+ +.. .|
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~ 230 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPF 230 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcc
Confidence 3444443346889999999999999999997754 47999999 777777776 333343 33333333 222 59
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
|+|+.+= |- + -.+.+...+++.++| ||++++.-.
T Consensus 231 DvIVANI-LA---~-vl~~La~~~~~~lkp---gg~lIlSGI 264 (300)
T COG2264 231 DVIVANI-LA---E-VLVELAPDIKRLLKP---GGRLILSGI 264 (300)
T ss_pred cEEEehh-hH---H-HHHHHHHHHHHHcCC---CceEEEEee
Confidence 9987654 42 2 246788999999999 888887653
No 147
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.38 E-value=2.4e-06 Score=72.73 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=76.2
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC---------CCCc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---------IPPA 256 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---------~p~~ 256 (306)
..++++||+||++.|+.+..+++..| +.+++.+|. |+..+.|++ ..+||+++.+|..+- ...|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 46789999999999999999999987 579999999 777888876 468999999998751 1249
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
|+|++-. ...+-...+..+.+.|+| |.++|+|-++
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l 157 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVL 157 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEcccc
Confidence 9999865 344556788889999998 5566666544
No 148
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.37 E-value=2.1e-06 Score=76.93 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=66.2
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCCCccEEEehhhh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVLLKWIL 265 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~~~~~~vl 265 (306)
.....+|||||||+|-+++..++... -+++++|+ |..++.|++ ..+++.+. ...+ +...||+|+.+-..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANILA 235 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES-H
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCCH
Confidence 35568999999999999999888754 37999999 777787776 45677653 1111 12359998854332
Q ss_pred ccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 266 HDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
+....++..+.+.|+| ||++++.-.+.
T Consensus 236 -----~vL~~l~~~~~~~l~~---~G~lIlSGIl~ 262 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKP---GGYLILSGILE 262 (295)
T ss_dssp -----HHHHHHHHHCHHHEEE---EEEEEEEEEEG
T ss_pred -----HHHHHHHHHHHHhhCC---CCEEEEccccH
Confidence 3346788888999999 78888765543
No 149
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=3.6e-06 Score=79.83 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=76.3
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-C-C-C-CccEEEeh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A-I-P-PADAVLLK 262 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~-~-p-~~D~~~~~ 262 (306)
.....+|||+|||+|..+..+++.. +..+++.+|+ +..++.+++ ..++|++..+|..+ + . + .||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4556799999999999999999886 4568999999 788877765 34568999999876 3 1 2 49999872
Q ss_pred hh------h-------ccCCch-------HHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 263 WI------L-------HDWNDE-------ECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 263 ~v------l-------h~~~d~-------~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
-. + ..++.+ .-.++|.++++.|+| ||.++.....+
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 11 1 122221 126789999999999 88877665544
No 150
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.35 E-value=1.9e-06 Score=76.79 Aligned_cols=83 Identities=11% Similarity=0.240 Sum_probs=60.5
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEeccCCC-CCCCc-cE
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIPPA-DA 258 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p~~-D~ 258 (306)
..+++.++ .....+|||||||+|.++..++++.+ +++++|. +.+++.+++ ..++++++.+|+.+ +.+.. ..
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 33444444 45667999999999999999999976 7889998 888888876 23789999999988 54443 23
Q ss_pred EEehhhhccCCc
Q 021867 259 VLLKWILHDWND 270 (306)
Q Consensus 259 ~~~~~vlh~~~d 270 (306)
.++.|.-++.+.
T Consensus 108 ~vv~NlPY~iss 119 (272)
T PRK00274 108 KVVANLPYNITT 119 (272)
T ss_pred eEEEeCCccchH
Confidence 344555554443
No 151
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.32 E-value=2.7e-06 Score=71.45 Aligned_cols=122 Identities=16% Similarity=0.254 Sum_probs=69.9
Q ss_pred ccccCCchHHHHHHHHHHhch-hh---hHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHh
Q 021867 159 VYAGDEPKINNFFNEAMASDA-RL---ATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNG 234 (306)
Q Consensus 159 e~~~~~~~~~~~f~~~m~~~~-~~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~ 234 (306)
+.+.++|+....|+....... .| -.+.+++.+. ..++...|.|+|||.+.++..+.+ ..++.-+|+-.
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva---- 103 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA---- 103 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC----
Confidence 344466766666666555332 12 2344444433 123457899999999998866542 34789999732
Q ss_pred chhcCCCeEEEeccCCC-CCC--CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 235 LESDLANLKYVGGDMFE-AIP--PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 235 a~~~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
..++ +.+.|+-. |.+ ..|+++++-.|-.- + ....|+++.|+|+| ||.|.|.|..
T Consensus 104 ---~n~~--Vtacdia~vPL~~~svDv~VfcLSLMGT-n--~~~fi~EA~RvLK~---~G~L~IAEV~ 160 (219)
T PF05148_consen 104 ---PNPR--VTACDIANVPLEDESVDVAVFCLSLMGT-N--WPDFIREANRVLKP---GGILKIAEVK 160 (219)
T ss_dssp ---SSTT--EEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEG
T ss_pred ---CCCC--EEEecCccCcCCCCceeEEEEEhhhhCC-C--cHHHHHHHHheecc---CcEEEEEEec
Confidence 1233 55689976 766 48999999888532 2 35789999999999 8999999864
No 152
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.31 E-value=2.5e-06 Score=71.78 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=73.3
Q ss_pred HHHHhhchhhhcC--CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEeccCCCCCC----C
Q 021867 184 RVVIHKCKDVFEG--LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFEAIP----P 255 (306)
Q Consensus 184 ~~~~~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~~p----~ 255 (306)
...++.+. +++ +.-|||||||+|..+..|.... ...+++|+ |+|++.|.+ ..+ -.+.-+||-+..| .
T Consensus 38 eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 38 ERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELE-GDLILCDMGEGLPFRPGT 112 (270)
T ss_pred HHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCCCCCCCCc
Confidence 33344444 444 7889999999999888887654 67999999 999999985 111 2467788888433 3
Q ss_pred ccEEEehhhhcc---------CCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 256 ADAVLLKWILHD---------WNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 256 ~D~~~~~~vlh~---------~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
||.+|....+.. .|......++..++.+|++ |++.++
T Consensus 113 FDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 113 FDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred cceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 898877655521 2233345678889999998 787765
No 153
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.28 E-value=6.1e-06 Score=70.52 Aligned_cols=100 Identities=17% Similarity=0.245 Sum_probs=80.7
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEe-ccCCC--C---CCCccEE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVG-GDMFE--A---IPPADAV 259 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~-~d~~~--~---~p~~D~~ 259 (306)
..++++||+||.+.|+.+..++...| +.+++.+|. ++..+.|++ ..++|++.. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56899999999999999999999999 889999999 888888887 577798888 57765 2 2369999
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 260 LLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 260 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
|+-. ...+-...|..+.+.|+| |.|+|+|.++..
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~----GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRP----GGLIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCC----CcEEEEeecccC
Confidence 8843 344446789999999999 566677766554
No 154
>PLN02476 O-methyltransferase
Probab=98.23 E-value=8e-06 Score=72.48 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=76.3
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC---C------CCc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I------PPA 256 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~------p~~ 256 (306)
..++++|||||+++|..+..+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+- . ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45789999999999999999998876 558899998 777788776 567999999998662 1 258
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
|++++-- +...-...+..+.+.|+| ||.|++ |-++
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~-DNvL 230 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVM-DNVL 230 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEE-ecCc
Confidence 9988853 345567789999999998 666554 5443
No 155
>PLN02823 spermine synthase
Probab=98.21 E-value=8.8e-06 Score=74.40 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=73.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEeccCCCC---CC-CccEEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFEA---IP-PADAVL 260 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~~---~p-~~D~~~ 260 (306)
+++++||.||||.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|.++- .+ .||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4678999999999999999998766678999999 899999887 147999999998772 22 599999
Q ss_pred ehhhhccCCc--hH---HHHHHH-HHHHhcCCCCCCcEEEEE
Q 021867 261 LKWILHDWND--EE---CVKILK-KCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 261 ~~~vlh~~~d--~~---~~~iL~-~~~~~L~p~~~gg~lli~ 296 (306)
+--. ..+.. .. ...+++ .+++.|+| ||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEEe
Confidence 8631 11110 00 235777 88999999 7876653
No 156
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.20 E-value=2.7e-05 Score=68.27 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=67.3
Q ss_pred CCCeEEEecCCcc--HHHHHH-HHHCCCCeEEEecc-hHHHHhchh---cCCC--eEEEeccCCCC-----CC-------
Q 021867 196 GLNSLVDVGGGIG--TVAKAI-AKAFPNLECTDFDL-PHVVNGLES---DLAN--LKYVGGDMFEA-----IP------- 254 (306)
Q Consensus 196 ~~~~vlDvGgG~G--~~~~~l-~~~~p~~~~~~~Dl-~~~~~~a~~---~~~r--v~~~~~d~~~~-----~p------- 254 (306)
+...+||||||-- ...-++ .+..|+.+++-+|. |-++.+++. ..++ ..++.+|+.+| .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 6789999999943 344444 45689999999999 888998887 3344 89999999984 12
Q ss_pred --CccEEEehhhhccCCc-hHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 255 --PADAVLLKWILHDWND-EECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 255 --~~D~~~~~~vlh~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
..=.+++.-+||+.+| ++...+++..+++|.| |+.|+|.-..-+
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCC
Confidence 1237899999999987 7788999999999999 899998877643
No 157
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.20 E-value=9.4e-06 Score=73.00 Aligned_cols=89 Identities=16% Similarity=0.346 Sum_probs=66.6
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCCC
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPP 255 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~ 255 (306)
..+++... .....+|||||||.|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34454444 4566799999999999999999875 46888898 778877765 25789999999988 5667
Q ss_pred ccEEEehhhhccCCchHHHHHH
Q 021867 256 ADAVLLKWILHDWNDEECVKIL 277 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL 277 (306)
+|+++ .+.-++++.+...++|
T Consensus 102 ~d~Vv-aNlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCV-ANVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEE-ecCCcccCcHHHHHHH
Confidence 88666 4666667776555555
No 158
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.18 E-value=9.5e-06 Score=72.26 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=78.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEeccCCC---CCC-CccEEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP-PADAVL 260 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p-~~D~~~ 260 (306)
+.+++||-||||.|..++++++..+.-+++.+|+ +.|++.+++ ..+|++++.+|-++ ..+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4567999999999999999999988889999999 999999988 24899999999877 233 599998
Q ss_pred ehhhhccCCch---HHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 261 LKWILHDWNDE---ECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 261 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+-..=.. ... --..+++.|+++|++ +|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 8553321 110 014789999999999 7877765
No 159
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.17 E-value=1.5e-05 Score=71.13 Aligned_cols=103 Identities=18% Similarity=0.301 Sum_probs=74.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC-eEEEecc-hHHHHhchh---cCCCeEE--EeccCCC---CCCCccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES---DLANLKY--VGGDMFE---AIPPADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~---~~~rv~~--~~~d~~~---~~p~~D~~~~~~v 264 (306)
-.+.+|||+|+|.|..+-.....+|.. +++.+|. +.+++.++. ....... ...++.. +.+..|+|+++++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 357899999999999999999999865 5889998 777777665 1111111 1122221 3445799999999
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
|-..+++....+++++.+.+. +.|||+|.-.+.
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~ 144 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTA-----PVLVLVEPGTPA 144 (274)
T ss_pred hhcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChH
Confidence 999988777788888877765 499999976553
No 160
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.15 E-value=9.9e-06 Score=71.88 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=71.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchH-HHHhchh-------cCC----CeEEEeccCCCC---------C
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPH-VVNGLES-------DLA----NLKYVGGDMFEA---------I 253 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~-~~~~a~~-------~~~----rv~~~~~d~~~~---------~ 253 (306)
++...++|+|||-|+-++..-++.= -.+++.|+.+ .+++|++ ... -+.|.++|-+.. .
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 5677899999999988776665432 2689999944 4667765 112 367888886641 2
Q ss_pred CCccEEEehhhhcc-CC-chHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 254 PPADAVLLKWILHD-WN-DEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 254 p~~D~~~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
|.+|++-+-+++|+ |. .+.+..+|+++.+.|+| ||.++-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEE
Confidence 34999999999998 54 46677889999999999 777653
No 161
>PRK04148 hypothetical protein; Provisional
Probab=98.14 E-value=4.6e-05 Score=59.98 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=68.4
Q ss_pred HHHhhchhhhcCCCeEEEecCCccH-HHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCCC----CccE
Q 021867 185 VVIHKCKDVFEGLNSLVDVGGGIGT-VAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP----PADA 258 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p----~~D~ 258 (306)
.+.+.+. ..+..+++|||||.|. .+..|.+. +..++++|. +..++.+++ ..+.++.+|+|+|-+ ++|+
T Consensus 7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred HHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCCE
Confidence 3444444 2345789999999996 77777765 568999999 777777763 457899999999644 5899
Q ss_pred EEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 259 VLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 259 ~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
++..+ |.++...-+.++++... .-++|.-
T Consensus 81 iysir-----pp~el~~~~~~la~~~~-----~~~~i~~ 109 (134)
T PRK04148 81 IYSIR-----PPRDLQPFILELAKKIN-----VPLIIKP 109 (134)
T ss_pred EEEeC-----CCHHHHHHHHHHHHHcC-----CCEEEEc
Confidence 98876 34455555666666653 4555543
No 162
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.13 E-value=1.1e-05 Score=68.37 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCCC--C--CccEEEehhhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI--P--PADAVLLKWIL 265 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~--p--~~D~~~~~~vl 265 (306)
...+|||+|||+|.++..++.+.. .+++++|. +..++.+++ ..++++++.+|+++.. . .||+|++.=..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 356999999999999997666553 58999998 777777765 3458999999987622 2 48999876554
Q ss_pred ccCCchHHHHHHHHHHH--hcCCCCCCcEEEEEeee
Q 021867 266 HDWNDEECVKILKKCKE--AVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~e~~ 299 (306)
+.--.+ .+++.+.+ .|.| +.++++|..
T Consensus 132 ~~g~~~---~~l~~l~~~~~l~~----~~iv~ve~~ 160 (199)
T PRK10909 132 RKGLLE---ETINLLEDNGWLAD----EALIYVESE 160 (199)
T ss_pred CCChHH---HHHHHHHHCCCcCC----CcEEEEEec
Confidence 322122 34444444 3677 456666643
No 163
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.12 E-value=1.7e-05 Score=69.40 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=76.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC--CC--------CC
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--AI--------PP 255 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~~--------p~ 255 (306)
..++++||+||++.|..+..+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+ +. ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45688999999999999999998864 678999998 777777776 57899999999876 21 35
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
||++++-. ....-...+..+.+.|+| | .++|+|-++
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~---G-Gviv~DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV---G-GVIGYDNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC---C-eEEEEcCCC
Confidence 99998864 244456778888899998 4 556666553
No 164
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.12 E-value=1.4e-05 Score=76.15 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=63.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCC-----CC--CccEEEe
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-----IP--PADAVLL 261 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-----~p--~~D~~~~ 261 (306)
....+|||+|||+|.++..+++.. .+++++|. +.+++.|++ ..++++|+.+|+.+. .+ .+|++++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 455799999999999999999886 57999999 888888876 345799999998652 21 4899876
Q ss_pred hhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 262 KWILHDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 262 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
.= |-.....+++.+.+ ++| ++.++|
T Consensus 374 dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv 398 (443)
T PRK13168 374 DP-----PRAGAAEVMQALAK-LGP---KRIVYV 398 (443)
T ss_pred Cc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence 32 22112344555544 566 454444
No 165
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.12 E-value=2e-05 Score=68.83 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=77.4
Q ss_pred HHHhhchhhhcCCCeEEEecCCccHHHHHHHH-HCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC-
Q 021867 185 VVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAK-AFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP- 254 (306)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p- 254 (306)
.++..++ .....+||+.|.|+|.++..|++ -.|.-++.-+|. .+-.+.|++ ..++|++..+|+.+ -++
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 3455556 77889999999999999999996 568889999998 677777776 56799999999965 232
Q ss_pred ----CccEEEehhhhccCCchHHHHHHHHHHHhc-CCCCCCcEEEEEeeec
Q 021867 255 ----PADAVLLKWILHDWNDEECVKILKKCKEAV-TSDDKKGKVIIIDMIR 300 (306)
Q Consensus 255 ----~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L-~p~~~gg~lli~e~~~ 300 (306)
.+|.+++ |.+++. ..+..+.++| ++ ||++++.-+++
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~i 149 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCI 149 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSH
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCH
Confidence 4898887 677775 5699999999 78 89999876654
No 166
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.10 E-value=4.6e-06 Score=70.61 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=73.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEe-ccCCC--CCCCccEEEehhhhccC
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVG-GDMFE--AIPPADAVLLKWILHDW 268 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~-~d~~~--~~p~~D~~~~~~vlh~~ 268 (306)
.++.++||+|||+|..+..|...-. +.+++|+ ..|+++|.+ ..+....-. .+|.. .+..+|+|....||-+.
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl 201 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL 201 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh
Confidence 3489999999999999988877643 4678899 789998876 222222111 12443 23369999999999998
Q ss_pred CchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 269 NDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
.+-+ .++-.+...|.| ||.+...-..+++
T Consensus 202 G~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~ 230 (287)
T COG4976 202 GALE--GLFAGAAGLLAP---GGLFAFSVETLPD 230 (287)
T ss_pred cchh--hHHHHHHHhcCC---CceEEEEecccCC
Confidence 8753 689999999999 7877665444443
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.09 E-value=1.4e-05 Score=75.93 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=78.9
Q ss_pred CccccccCCchHHHHHHHHHHhchhhhHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHC----CCCeEEEecc-hH
Q 021867 156 SFWVYAGDEPKINNFFNEAMASDARLATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF----PNLECTDFDL-PH 230 (306)
Q Consensus 156 ~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~Dl-~~ 230 (306)
..||.+++|+...+.|.+++... + ......-. ...+...|+|||||+|-++...+++. -..++..++- |.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~a---l-~D~~~~~~-~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEA---L-KDRVRKNS-YSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHH---H-HHHHTTS--SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHH---H-Hhhhhhcc-ccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 34777788888888887776321 1 11111111 01136789999999999987666554 3568999987 43
Q ss_pred HHHhch----h--cCCCeEEEeccCCC-CCC-CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEE
Q 021867 231 VVNGLE----S--DLANLKYVGGDMFE-AIP-PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVI 294 (306)
Q Consensus 231 ~~~~a~----~--~~~rv~~~~~d~~~-~~p-~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~ll 294 (306)
.+...+ . ..++|+++.+|+.+ ..| .+|+++.=..=.....|-....|..+.+.|+| +|.++
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~I 294 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIMI 294 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEEe
Confidence 332221 1 57899999999999 666 59999764443222223344568888889999 65543
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.08 E-value=5.8e-06 Score=71.31 Aligned_cols=95 Identities=21% Similarity=0.353 Sum_probs=68.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCC----CC--CccEEEehhhh
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP--PADAVLLKWIL 265 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p--~~D~~~~~~vl 265 (306)
..+||||||.|.++..+|+++|+..++++++ ..++..+-+ ...+|.++++|..+- .+ +.|-|++.+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999999 333333332 344999999998661 22 35655554332
Q ss_pred ccCCchHH-------HHHHHHHHHhcCCCCCCcEEEEE
Q 021867 266 HDWNDEEC-------VKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 266 h~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
-|+.... ..+|+.+.+.|+| ||.|.+.
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~a 163 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFA 163 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEE
Confidence 1443221 4579999999999 8988764
No 169
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.07 E-value=2.4e-05 Score=67.90 Aligned_cols=91 Identities=20% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCCC-CccEEEehhhhccCCchHH
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP-PADAVLLKWILHDWNDEEC 273 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p-~~D~~~~~~vlh~~~d~~~ 273 (306)
+..++||||.|.|.....++..|.+ +.+.+. +.|....++ ..++++..|=....+ .||+|.+-|+|-...++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~--kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK--KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh--CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence 4578999999999999999999987 455576 666555542 344555443333222 59999999999655555
Q ss_pred HHHHHHHHHhcCCCCCCcEEEE
Q 021867 274 VKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 274 ~~iL~~~~~~L~p~~~gg~lli 295 (306)
..+|+.++++|+| +|+++|
T Consensus 168 ~~LL~~i~~~l~p---~G~lil 186 (265)
T PF05219_consen 168 LTLLRDIRRALKP---NGRLIL 186 (265)
T ss_pred HHHHHHHHHHhCC---CCEEEE
Confidence 5899999999999 677665
No 170
>PRK00536 speE spermidine synthase; Provisional
Probab=98.06 E-value=3.4e-05 Score=67.96 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=69.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEeccCCCCC-CCccEEEehh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFEAI-PPADAVLLKW 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~~~-p~~D~~~~~~ 263 (306)
+.+++||=||||.|..++++++. |. +++.+|+ +.|++.+++ ..+|++++.. +.+.. ..||+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 67899999999999999999975 65 9999999 788888887 5789999873 32222 3599999864
Q ss_pred hhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 264 ILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
. .+ ....+.++++|+| ||.++..
T Consensus 148 ~----~~---~~fy~~~~~~L~~---~Gi~v~Q 170 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE---DGVFISV 170 (262)
T ss_pred C----CC---hHHHHHHHHhcCC---CcEEEEC
Confidence 2 22 3578999999999 7777663
No 171
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.06 E-value=4e-05 Score=66.10 Aligned_cols=121 Identities=17% Similarity=0.288 Sum_probs=82.0
Q ss_pred cccccCCchHHHHHHHHHHhchh-h---hHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHH
Q 021867 158 WVYAGDEPKINNFFNEAMASDAR-L---ATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVN 233 (306)
Q Consensus 158 ~e~~~~~~~~~~~f~~~m~~~~~-~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~ 233 (306)
++.+..+|...+.|+........ | -...++..+. .-++...|.|+|||-+.++. . -..++..+|+-.+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~----~-~~~kV~SfDL~a~-- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS----S-ERHKVHSFDLVAV-- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh----c-cccceeeeeeecC--
Confidence 34445678777777777665432 2 1344455443 13566889999999998775 1 1235788887332
Q ss_pred hchhcCCCeEEEeccCCC-CCC--CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 234 GLESDLANLKYVGGDMFE-AIP--PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 234 ~a~~~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
.+ .+++.|+.+ |.+ +.|+++++-.|-- ++ ...++++++|+|++ ||.+.|.|.-
T Consensus 211 -----~~--~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn--~~df~kEa~RiLk~---gG~l~IAEv~ 266 (325)
T KOG3045|consen 211 -----NE--RVIACDMRNVPLEDESVDVAVFCLSLMG-TN--LADFIKEANRILKP---GGLLYIAEVK 266 (325)
T ss_pred -----CC--ceeeccccCCcCccCcccEEEeeHhhhc-cc--HHHHHHHHHHHhcc---CceEEEEehh
Confidence 23 355789988 665 4899988887753 22 35689999999999 9999998853
No 172
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.05 E-value=1.2e-05 Score=70.59 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=74.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEeccCCC---C-CC-CccEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---A-IP-PADAV 259 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~-~p-~~D~~ 259 (306)
+++++||=||+|.|..+.++++..+-.+++++|+ |.|++.+++ ..+|++++.+|.+. . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999997766678999999 888898887 25799999999865 2 23 59999
Q ss_pred EehhhhccCCchH--HHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 260 LLKWILHDWNDEE--CVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 260 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
++--.--..+... ...+++.+++.|+| +|.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 8743321111111 25789999999999 78777654
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.04 E-value=7.6e-05 Score=60.33 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=91.9
Q ss_pred hhhHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecc-hHHHHhchhcCCCeEEEeccCCC-C----
Q 021867 180 RLATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-A---- 252 (306)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~---- 252 (306)
.+.++.+++..+ ++...-|+++|.|+|.+...++++. +....+.++. ++-..+..+..+.+.++.||.+. .
T Consensus 34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 345566667777 6777899999999999999998764 3445677776 77777666667778899999886 2
Q ss_pred -CC--CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 253 -IP--PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 253 -~p--~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
.+ .+|.+++.-.+-.+|-....+||+.+..-|++ ||.++-+.+-
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 22 48999999999999999999999999999999 8888877655
No 174
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.3e-05 Score=65.59 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=72.5
Q ss_pred HHhhchhhhcCCCeEEEecCCccHHHHHHHHHC--CCCeEEEecc-hHHHHhchh---------------cCCCeEEEec
Q 021867 186 VIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF--PNLECTDFDL-PHVVNGLES---------------DLANLKYVGG 247 (306)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~---------------~~~rv~~~~~ 247 (306)
+++.++..+....+.||||+|+|+++..++..- +....+++|. |++++.+++ ...++.++.|
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 344444446677889999999999998888543 2223378898 888888776 3567889999
Q ss_pred cCCCC---CCCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 248 DMFEA---IPPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 248 d~~~~---~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
|-..- ...||.|++.- .+.++.++....|++ ||+++|
T Consensus 152 Dgr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~~---gGrlli 191 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGA--------AASELPQELLDQLKP---GGRLLI 191 (237)
T ss_pred CccccCCccCCcceEEEcc--------CccccHHHHHHhhcc---CCeEEE
Confidence 98873 33599998872 234567888888998 899887
No 175
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=3e-05 Score=64.01 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=54.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCCCCCccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~~~~~~v 264 (306)
-..++|+|+|||+|.+++..+-..|. +++++|+ |+.++.+++ ...+|.|++.|..+....+|.++++=.
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPP 117 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPP 117 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCC
Confidence 35678999999999999988876654 7999999 888888887 567899999998774444555555433
No 176
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.95 E-value=4.6e-05 Score=68.03 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=71.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEeccCCC-CCCC-ccEEEehhhhccC
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIPP-ADAVLLKWILHDW 268 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p~-~D~~~~~~vlh~~ 268 (306)
.+.|||||||+|-++.-.+++. ..++..++-.+|.+.|++ ..+||++++|-+.+ +.|+ +|+++.--.-+-+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 4789999999998887666654 347888999999999987 68999999999999 8885 8988764333333
Q ss_pred CchHHHHHHHHHHHhcCCCCCCcEEE
Q 021867 269 NDEECVKILKKCKEAVTSDDKKGKVI 294 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p~~~gg~ll 294 (306)
-++....---.+++.|+| .|+.+
T Consensus 257 ~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCC---CCccc
Confidence 344444444567799999 67653
No 177
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.94 E-value=9e-05 Score=67.27 Aligned_cols=102 Identities=13% Similarity=0.220 Sum_probs=75.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCC----CCeEEEecc-hHHHHhchh-----cCCCeEE--EeccCCCC---CC------
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFP----NLECTDFDL-PHVVNGLES-----DLANLKY--VGGDMFEA---IP------ 254 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~Dl-~~~~~~a~~-----~~~rv~~--~~~d~~~~---~p------ 254 (306)
...+|+|+|||+|.-...|++... ..+.+.+|+ .+.++.+.+ ..+.|++ +++||.++ .+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 455899999999988777666553 467999999 456666554 2355666 77898662 21
Q ss_pred Cc-cEEEehhhhccCCchHHHHHHHHHHH-hcCCCCCCcEEEE-Eeeec
Q 021867 255 PA-DAVLLKWILHDWNDEECVKILKKCKE-AVTSDDKKGKVII-IDMIR 300 (306)
Q Consensus 255 ~~-D~~~~~~vlh~~~d~~~~~iL~~~~~-~L~p~~~gg~lli-~e~~~ 300 (306)
.. -++++...+.+++++++..+|+++++ .|+| |+.++| +|...
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG~D~~k 201 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIGLDGCK 201 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEecCCCC
Confidence 23 45567889999999999999999999 9999 677766 55543
No 178
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.92 E-value=7.4e-05 Score=70.02 Aligned_cols=99 Identities=10% Similarity=0.051 Sum_probs=70.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC-CCeEEEeccCCCCC------C-CccEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFEAI------P-PADAV 259 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~~~------p-~~D~~ 259 (306)
.+..+|||+|||+|.++...+.. +..+++.+|+ +.+++.|++ .. ++++++.+|+++.. . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 34689999999999998776643 3458999999 888888876 22 48999999998721 2 49999
Q ss_pred EehhhhccCCc-------hHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 260 LLKWILHDWND-------EECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 260 ~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
++.=.--.-+. ..-..+++.+.+.|+| ||.|+.+.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 97633211111 1123456678899999 88888754
No 179
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.92 E-value=4.4e-05 Score=76.84 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=71.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC-CCeEEEeccCCCC---CC-CccEEEehh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFEA---IP-PADAVLLKW 263 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~~---~p-~~D~~~~~~ 263 (306)
..++|||+|||+|.++..+++. ...+++.+|+ +.+++.|++ .. ++++++.+|+++. .+ .||+|++.=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4679999999999999999985 3347999999 888888887 22 5899999998762 23 599999842
Q ss_pred hhc-------c-CC-chHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 264 ILH-------D-WN-DEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 264 vlh-------~-~~-d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.-. . +. ...-..+++.+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 110 0 10 12235688899999999 8877653
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.91 E-value=3.9e-05 Score=69.09 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=70.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEeccCCC-CCC--CccEEEehhhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVLLKWIL 265 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~~~~~~vl 265 (306)
-+.++|||||||+|-++.--+++. ..+++++|-.++.+.|.+ ..+.|++..|.+.+ .+| ..|+++.-+.=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 356899999999999998888887 568999999888888877 56779999998887 444 69999887666
Q ss_pred ccCCchH-HHHHHHHHHHhcCCCCCCcEEE
Q 021867 266 HDWNDEE-CVKILKKCKEAVTSDDKKGKVI 294 (306)
Q Consensus 266 h~~~d~~-~~~iL~~~~~~L~p~~~gg~ll 294 (306)
+..--+- .-.+|-.==+.|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 5433222 12223333367888 67553
No 181
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.90 E-value=6.8e-05 Score=68.30 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=53.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-C--CC-CccEEEeh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVLLK 262 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~~~~~ 262 (306)
...+|||+|||+|.++..+++. ..+++++|. +.+++.|++ ..++++|+.+|+.+ . .. .+|++++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3579999999999999999984 468999999 888888876 34689999999976 2 22 48998876
No 182
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.85 E-value=4.6e-05 Score=68.34 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=61.0
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-c--CCCeEEEeccCCC--C-C-
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-D--LANLKYVGGDMFE--A-I- 253 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-~--~~rv~~~~~d~~~--~-~- 253 (306)
.+++++.+. ......+||.+||.|+++..+++.+| +.+++++|. |++++.+++ . .+|++++.+||.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 456666665 44567999999999999999999996 789999999 899998886 3 3689999999875 1 1
Q ss_pred ---CCccEEEe
Q 021867 254 ---PPADAVLL 261 (306)
Q Consensus 254 ---p~~D~~~~ 261 (306)
+.+|.|++
T Consensus 86 ~~~~~vDgIl~ 96 (296)
T PRK00050 86 EGLGKVDGILL 96 (296)
T ss_pred cCCCccCEEEE
Confidence 14777765
No 183
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.83 E-value=7.2e-05 Score=67.88 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEe----ccCCCCC--C--CccEE
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVG----GDMFEAI--P--PADAV 259 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~----~d~~~~~--p--~~D~~ 259 (306)
...++||||||+|.+...++.+.++.+++++|+ +..++.|++ ..++|++.. .+++... + .||++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999999999999999999999999999 888888876 246788764 3444432 2 49999
Q ss_pred EehhhhccCCc
Q 021867 260 LLKWILHDWND 270 (306)
Q Consensus 260 ~~~~vlh~~~d 270 (306)
+++=.+|.-.+
T Consensus 194 vcNPPf~~s~~ 204 (321)
T PRK11727 194 LCNPPFHASAA 204 (321)
T ss_pred EeCCCCcCcch
Confidence 99888876444
No 184
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=0.00027 Score=61.63 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=51.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecc----CCCCCC----CccEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGD----MFEAIP----PADAV 259 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d----~~~~~p----~~D~~ 259 (306)
.....+||+|||+|.++..++...|+.+++.+|. +.++..|.+ ..+++.++..+ .+.+.+ ..|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 4556899999999999999999999999999999 555665554 78899888554 444433 36766
Q ss_pred Ee
Q 021867 260 LL 261 (306)
Q Consensus 260 ~~ 261 (306)
+.
T Consensus 227 vs 228 (328)
T KOG2904|consen 227 VS 228 (328)
T ss_pred ec
Confidence 55
No 185
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.74 E-value=0.00022 Score=60.03 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC---C--C-C-ccEEEe
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I--P-P-ADAVLL 261 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~--p-~-~D~~~~ 261 (306)
...++||++||+|.++.+++.+... +++++|. +..++.+++ ..++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3578999999999999999998764 7999998 677766665 345899999999651 1 1 2 566555
Q ss_pred hhhhccCCchHHHHHHHHHHH--hcCCCCCCcEEEEEeee
Q 021867 262 KWILHDWNDEECVKILKKCKE--AVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 262 ~~vlh~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~e~~ 299 (306)
- .-+... ....+++.+.+ .+++ +.++|+|.-
T Consensus 128 D-PPy~~~--~~~~~l~~l~~~~~l~~----~~iiv~E~~ 160 (189)
T TIGR00095 128 D-PPFFNG--ALQALLELCENNWILED----TVLIVVEED 160 (189)
T ss_pred C-cCCCCC--cHHHHHHHHHHCCCCCC----CeEEEEEec
Confidence 3 332221 12234444433 4665 556777654
No 186
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.71 E-value=9.9e-05 Score=70.21 Aligned_cols=91 Identities=21% Similarity=0.351 Sum_probs=63.7
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCC-----C-C-CccEEE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-----I-P-PADAVL 260 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-----~-p-~~D~~~ 260 (306)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|++ ..++++|+.+|+.+. . . .+|+++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3456799999999999999999875 37899999 888888886 346899999998651 1 1 379888
Q ss_pred ehhhhccCCchH-HHHHHHHHHHhcCCCCCCcEEEE
Q 021867 261 LKWILHDWNDEE-CVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 261 ~~~vlh~~~d~~-~~~iL~~~~~~L~p~~~gg~lli 295 (306)
+.= |... ...+++.+.+ ++| ++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cCC---CEEEEE
Confidence 632 2111 1345555543 677 554444
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.71 E-value=0.00016 Score=69.94 Aligned_cols=98 Identities=16% Similarity=0.285 Sum_probs=71.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc--hHHHHhchh----cCCCeEEEeccCCC---CCC--CccEEEehhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL--PHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVLLKWI 264 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~~~~~~v 264 (306)
....+||||||.|.++..+++.+|+..++++|. +.+....++ ...++.+.++|+.. -+| +.|-+++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999999 333333332 45688888888642 344 3677766554
Q ss_pred hccCCchH-------HHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 265 LHDWNDEE-------CVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 265 lh~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
=- |+... ...+|+.+++.|+| ||.|.+..
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 32 44322 24689999999999 89887753
No 188
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.71 E-value=3.7e-05 Score=72.38 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=67.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc----hHHHHhchhcCCCeEEEeccC---CCCCC--CccEEEehhhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL----PHVVNGLESDLANLKYVGGDM---FEAIP--PADAVLLKWIL 265 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl----~~~~~~a~~~~~rv~~~~~d~---~~~~p--~~D~~~~~~vl 265 (306)
....++||||||+|.|+..|..+. +..+.+-. +..++.|-+ -.|-.+-+-+ .=|+| .||++.+++++
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfale--RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALE--RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhh--cCcchhhhhhccccccCCccchhhhhccccc
Confidence 456789999999999999999874 33322222 233333321 1122222222 22777 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 266 HDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
..|...+. .+|-++-|+|+| ||.+++.-+-..
T Consensus 192 i~W~~~~g-~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 192 IPWHPNDG-FLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred ccchhccc-ceeehhhhhhcc---CceEEecCCccc
Confidence 99987763 589999999999 899888766544
No 189
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=6.4e-05 Score=65.89 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=72.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCC-CCC--CccEEEehhhhccCCc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVLLKWILHDWND 270 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d 270 (306)
+....++|+|||.|.++. .+|.+-.+++|+ -..+..+++ .+.......|+.. |.+ .+|..+...++|+|+.
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~-~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR-SGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc-CCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 347889999999997653 348888999999 555666663 2222566678887 655 5999999999999874
Q ss_pred -hHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 271 -EECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 271 -~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
.....+++++.+.++| ||..+|.-
T Consensus 119 ~~RR~~~l~e~~r~lrp---gg~~lvyv 143 (293)
T KOG1331|consen 119 RERRERALEELLRVLRP---GGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEE
Confidence 4456789999999999 89877653
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.64 E-value=0.0004 Score=60.09 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHh-chhcCCCeE-EEeccCCC--------C
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNG-LESDLANLK-YVGGDMFE--------A 252 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~-a~~~~~rv~-~~~~d~~~--------~ 252 (306)
..+++.+. ......++||+|||+|.++..+++. +..+++++|. +.++.. .+ ..+++. +...|+.. +
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccCCHhHcCCC
Confidence 34455444 1135678999999999999999986 4457999999 435554 33 455554 33335542 1
Q ss_pred CCCccEEEehhhhccCCchHHHHHHHHHHHhcCC
Q 021867 253 IPPADAVLLKWILHDWNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 253 ~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p 286 (306)
++.+|+.+++..+ +|..+.+.|+|
T Consensus 141 ~~~~DvsfiS~~~----------~l~~i~~~l~~ 164 (228)
T TIGR00478 141 FATFDVSFISLIS----------ILPELDLLLNP 164 (228)
T ss_pred ceeeeEEEeehHh----------HHHHHHHHhCc
Confidence 1236777776554 36677777886
No 191
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.61 E-value=3.5e-05 Score=50.50 Aligned_cols=46 Identities=30% Similarity=0.595 Sum_probs=40.4
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
+.|+++|..+++++|+.|||+++|+ +...+.|+|..|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 4577888877778999999999999 678999999999999999976
No 192
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.57 E-value=0.00034 Score=65.28 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=51.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCC---C-CCccEEEeh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I-PPADAVLLK 262 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~-p~~D~~~~~ 262 (306)
...+|||++||+|.++..++.. ..+++++|. +.+++.|++ ..++++|..+|+.+. . ..+|+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3468999999999999999964 468999998 888888776 345899999998652 1 248988875
No 193
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.54 E-value=0.00043 Score=60.35 Aligned_cols=75 Identities=20% Similarity=0.422 Sum_probs=60.3
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP 254 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p 254 (306)
.+.++++-+ ......||+||.|+|.+...|+++. .+++.+++ |.+++...+ ...+.++..||++. +.|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 344555555 6778899999999999999999985 45777777 777776655 46889999999999 889
Q ss_pred CccEEEe
Q 021867 255 PADAVLL 261 (306)
Q Consensus 255 ~~D~~~~ 261 (306)
-+|+++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 8898876
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.50 E-value=0.00033 Score=58.57 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=67.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEecc----hHHHHhchh--cCCCeEEEeccCCC-CCC-CccEEEehhhhccCCc
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLECTDFDL----PHVVNGLES--DLANLKYVGGDMFE-AIP-PADAVLLKWILHDWND 270 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl----~~~~~~a~~--~~~rv~~~~~d~~~-~~p-~~D~~~~~~vlh~~~d 270 (306)
+++|||.|.|.-++-|+=.+|+.+++.+|. -..++.+.. ..++|+++++.+.+ ..+ .||+++++-+- +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 899999999999999999999999999998 233333333 56789999998888 333 69999998765 2
Q ss_pred hHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 271 EECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 271 ~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
...++.-+.+.+++ ||+++..
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~ 147 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAY 147 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEE
Confidence 23678888888998 8888775
No 195
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.49 E-value=0.00029 Score=63.78 Aligned_cols=93 Identities=22% Similarity=0.403 Sum_probs=72.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC-eEEEecc-hHHHHhchh------------cCCCeEEEeccCCCCCC----Cc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEAIP----PA 256 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~~p----~~ 256 (306)
.+..++|-+|||.|.-++++. +||+. +++.+|+ |.|++.+++ ..+||+++..|.++-.. .|
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 567899999999999999998 58865 7899999 999999884 57899999999998321 47
Q ss_pred cEEEehhhhccCCchH--------HHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 257 DAVLLKWILHDWNDEE--------CVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~--------~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
|++|. |++|+. ...+-+-+++.|++ +|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 88776 444432 24566778888998 7887774
No 196
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=9.7e-05 Score=66.39 Aligned_cols=102 Identities=19% Similarity=0.319 Sum_probs=70.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEecchHHHHh-chh-----cCCCeEEEeccCCC---CCCCccEEEehhhhc
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLE-CTDFDLPHVVNG-LES-----DLANLKYVGGDMFE---AIPPADAVLLKWILH 266 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl~~~~~~-a~~-----~~~rv~~~~~d~~~---~~p~~D~~~~~~vlh 266 (306)
+++|||||.|.|.-+-++-.-+|+++ +++++....+.. ... ..++-.....|+.. ++|.+|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 57799999999999999999999995 677776333332 221 22333334455543 466678887777776
Q ss_pred cCC----chHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 267 DWN----DEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 267 ~~~----d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
.+- .......+++....+.| ||.|+|+|.--|
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp 229 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP 229 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence 543 22233478889999999 999999997543
No 197
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.40 E-value=0.00038 Score=58.08 Aligned_cols=100 Identities=15% Similarity=0.270 Sum_probs=63.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------cCCCeEEEeccCCCCCCC-ccEEEeh
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEAIPP-ADAVLLK 262 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~~p~-~D~~~~~ 262 (306)
...++|||||.|.++..|+..||+.-++++++ -.|.+-.+. ...++.+...+.+.-.|+ +---.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35699999999999999999999999999998 333332221 244566666555553342 1222222
Q ss_pred hhhccCCchH-----------HHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 263 WILHDWNDEE-----------CVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 263 ~vlh~~~d~~-----------~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
-.++.++|+. +..++.+..=.|++ ||.++.+.-+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence 2222233321 24567777788898 8888876544
No 198
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.37 E-value=0.00013 Score=59.53 Aligned_cols=64 Identities=23% Similarity=0.427 Sum_probs=47.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC---CC--C-ccEEEehh
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IP--P-ADAVLLKW 263 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p--~-~D~~~~~~ 263 (306)
..|+|+-||.|..++.|++.+. +++.+|+ |..++.++. ..+||+++.+|+++. +. . +|+|+++=
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999975 4788888 777888776 478999999999872 22 2 79998764
No 199
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.36 E-value=0.00079 Score=53.82 Aligned_cols=85 Identities=24% Similarity=0.369 Sum_probs=59.7
Q ss_pred hcCCCeEEEecCCccHHHHHHHHH----CCCCeEEEecc-hHHHHhchh--------cCCCeEEEeccCCC-CCC-CccE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKA----FPNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFE-AIP-PADA 258 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-~~p-~~D~ 258 (306)
..+..+|+|+|||.|+++..|+.. .|+++++++|. +..++.+.+ ...++++..+++.. +.. ..++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 366789999999999999999982 37889999998 555565554 23667777777665 222 4677
Q ss_pred EEehhhhccCCchHHHHHHHHHHH
Q 021867 259 VLLKWILHDWNDEECVKILKKCKE 282 (306)
Q Consensus 259 ~~~~~vlh~~~d~~~~~iL~~~~~ 282 (306)
++--|.--+.++ .+|+...+
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEEeecccchHH----HHHHHHHH
Confidence 776666655555 44555544
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0013 Score=57.62 Aligned_cols=93 Identities=13% Similarity=0.311 Sum_probs=64.8
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCC-CCCC--
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP-- 255 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~-- 255 (306)
.+.+++... .....+|++||+|.|.+...|+++... ++++++ +..++..++ ..++++++.+|+.+ +++.
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 455555554 455789999999999999999999876 455555 555555444 47899999999998 7774
Q ss_pred ccEEEehhhhccCCchHHHHHHHH
Q 021867 256 ADAVLLKWILHDWNDEECVKILKK 279 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~ 279 (306)
.-..+.+|+-++.+-+-..++|+.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhc
Confidence 234456666666776544444433
No 201
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.34 E-value=0.00099 Score=62.19 Aligned_cols=91 Identities=19% Similarity=0.131 Sum_probs=69.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC--C-CCCccEEEehhhhcc
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--A-IPPADAVLLKWILHD 267 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~-~p~~D~~~~~~vlh~ 267 (306)
..+|||++||+|.++..++...+..++++.|. +..++.+++ ..+.+++..+|... + ...||+|++. ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC--
Confidence 45899999999999999999887668999999 788887776 34567789999865 2 2359999884 32
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
..+ ..+|..+.+.+++ ||.|.|.
T Consensus 135 -Gs~--~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcC---CCEEEEE
Confidence 221 3578887788898 7888876
No 202
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=97.32 E-value=0.0021 Score=57.48 Aligned_cols=99 Identities=25% Similarity=0.433 Sum_probs=74.5
Q ss_pred CCeEEEecCCccHHHHHHHHHC--------------------CCCeEEEecc---hHHHHhchh----------------
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAF--------------------PNLECTDFDL---PHVVNGLES---------------- 237 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~Dl---~~~~~~a~~---------------- 237 (306)
..+||-||||.|.=+.+|+..+ |.+.++++|+ ..|++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999998887777766 2367899998 455554332
Q ss_pred ------cCCCeEEEeccCCC-CC---------CCccEEEehhhhccC---CchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 238 ------DLANLKYVGGDMFE-AI---------PPADAVLLKWILHDW---NDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 238 ------~~~rv~~~~~d~~~-~~---------p~~D~~~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
..=+++|...|+.+ .. |..++|.+.+.++.+ +-.+..++|.++-..++| |..|+|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 11247899999987 22 236899998888763 346678999999999999 899999984
No 203
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.28 E-value=0.0012 Score=58.56 Aligned_cols=93 Identities=14% Similarity=0.306 Sum_probs=66.7
Q ss_pred hHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEeccCCC-CCCC-
Q 021867 182 ATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP- 255 (306)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~- 255 (306)
.++.+++..+ ......|+|||+|.|.++..|++.. .++++++. +..++..++ ..++++++.+|+++ ..+.
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3455666655 5578899999999999999999998 67888888 666666665 46899999999998 4332
Q ss_pred ---ccEEEehhhhccCCchHHHHHHHHHHH
Q 021867 256 ---ADAVLLKWILHDWNDEECVKILKKCKE 282 (306)
Q Consensus 256 ---~D~~~~~~vlh~~~d~~~~~iL~~~~~ 282 (306)
-.+.++.+.-++.+. .++.++..
T Consensus 94 ~~~~~~~vv~NlPy~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEETGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEecccchH----HHHHHHhh
Confidence 345566665554443 45666655
No 204
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00061 Score=57.98 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=68.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCC--eEEEeccCCC-CCC--CccEEEehhhhcc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLAN--LKYVGGDMFE-AIP--PADAVLLKWILHD 267 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~r--v~~~~~d~~~-~~p--~~D~~~~~~vlh~ 267 (306)
..+.+++|||||.|+....|..+. --+.+.+|. ..|++.++. ..+. ++...+|=.. ++. ++|+++.+..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 345689999999999999999876 236888898 677777765 2233 3445555433 444 4999999999995
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCcEEE
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKGKVI 294 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg~ll 294 (306)
.+|- ..-+.+|..+||| +|.++
T Consensus 150 ~NdL--Pg~m~~ck~~lKP---Dg~Fi 171 (325)
T KOG2940|consen 150 TNDL--PGSMIQCKLALKP---DGLFI 171 (325)
T ss_pred hccC--chHHHHHHHhcCC---Cccch
Confidence 5552 3558899999999 66554
No 205
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.0013 Score=56.12 Aligned_cols=69 Identities=25% Similarity=0.347 Sum_probs=55.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc----hHHHHhchh--cCCCeEEEeccCCC--CCCC-ccEEEehhhh
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL----PHVVNGLES--DLANLKYVGGDMFE--AIPP-ADAVLLKWIL 265 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl----~~~~~~a~~--~~~rv~~~~~d~~~--~~p~-~D~~~~~~vl 265 (306)
+.+++|||.|.|.-+.-++=.+|+.+++.+|. -.-++.+.+ ..++++++.+...+ +.+. ||+++++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 68999999999999999999999999999997 344444444 67889999998877 2335 9999887653
No 206
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0018 Score=54.75 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=75.5
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCC-CeEEEecchHHHHhchhcCCCeEEEeccCCCC-C-------
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPN-LECTDFDLPHVVNGLESDLANLKYVGGDMFEA-I------- 253 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~-~------- 253 (306)
..++.+.+. .+.+..+|+|+|+..|+++..+++.... .+++++|+.++-. .+.|.+..+|++.+ .
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----~~~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----IPGVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----CCCceEEeeeccCccHHHHHHHH
Confidence 355667774 6788899999999999999988887654 4689999865532 34599999999984 1
Q ss_pred -CC--ccEEEeh---hhhccCCc------hHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 254 -PP--ADAVLLK---WILHDWND------EECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 254 -p~--~D~~~~~---~vlh~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
+. +|+|+.- ++--.|.- .-|...+.-+.+.|+| ||.+++-.+
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f 160 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF 160 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence 22 5888742 22222321 2344567777889999 888887554
No 207
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.21 E-value=0.0029 Score=52.73 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=64.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC--
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLE---------CTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-- 254 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-- 254 (306)
+.+...|+|-=||+|.++++.+...++.. +++.|. +.+++.+++ ....|.+...|+.+ +.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45667999999999999999988888877 899999 888888776 45679999999998 633
Q ss_pred CccEEEehhhhccC-Cc-hHH----HHHHHHHHHhcCC
Q 021867 255 PADAVLLKWILHDW-ND-EEC----VKILKKCKEAVTS 286 (306)
Q Consensus 255 ~~D~~~~~~vlh~~-~d-~~~----~~iL~~~~~~L~p 286 (306)
.+|+|++.-..-.- .. .+. ..+++++.+.+++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 47988886655331 22 112 3467888888886
No 208
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=97.20 E-value=0.00027 Score=47.87 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 29 SMSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 29 ~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..+|..-.++.|++.|.. ++|.|+.+||+.+|+ ++..+++.|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 456666778888888843 289999999999999 6789999999999999999876
No 209
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.18 E-value=0.00084 Score=56.89 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=64.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEeccCCC-CCC-----CccEEEehhhhccCCc
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFE-AIP-----PADAVLLKWILHDWND 270 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~-~~p-----~~D~~~~~~vlh~~~d 270 (306)
.-++|||||=+...... .++-..++-+|+.+. .=.+...||++ |.| .||+|.++-||-+.|+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 46999999986653332 345556888898431 12355789999 776 3999999999999996
Q ss_pred hH-HHHHHHHHHHhcCCCCCCcE-----EEEEe
Q 021867 271 EE-CVKILKKCKEAVTSDDKKGK-----VIIID 297 (306)
Q Consensus 271 ~~-~~~iL~~~~~~L~p~~~gg~-----lli~e 297 (306)
+. .-.+++++++.|+| +|. |+|+=
T Consensus 120 p~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVl 149 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKP---PGLSLFPSLFLVL 149 (219)
T ss_pred HHHHHHHHHHHHHHhCC---CCccCcceEEEEe
Confidence 44 55689999999999 677 77763
No 210
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.15 E-value=0.00081 Score=56.98 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=64.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCC-C-CccEEEehhh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI-P-PADAVLLKWI 264 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~-p-~~D~~~~~~v 264 (306)
..+..+|+|+-||.|.++..+++..+..+++..|+ |..++..++ ..++|+...+|..+-. . .+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 34578999999999999999999888888999999 777777665 6788999999998732 2 488777754
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEE
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKV 293 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~l 293 (306)
|.. +..+|..+.+.+++ ||.+
T Consensus 178 ----p~~-~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 178 ----PES-SLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp ----TSS-GGGGHHHHHHHEEE---EEEE
T ss_pred ----hHH-HHHHHHHHHHHhcC---CcEE
Confidence 322 34678888888987 5554
No 211
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=97.13 E-value=0.00058 Score=50.03 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=47.7
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhc
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNAS 107 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (306)
+.|++.|...++++|+.+||+.+|+ +...++|.|+.|...|++.+... .+.|.+++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~---------~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ---------NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC---------CCceeecHHH
Confidence 4567777764468999999999999 67999999999999999998742 4778887743
No 212
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.10 E-value=0.0032 Score=55.85 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=58.2
Q ss_pred CCCeEEEecCCcc-HHHHHHHHH-CCCCeEEEecc-hHHHHhchh-------cCCCeEEEeccCCC-C--CCCccEEEeh
Q 021867 196 GLNSLVDVGGGIG-TVAKAIAKA-FPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFE-A--IPPADAVLLK 262 (306)
Q Consensus 196 ~~~~vlDvGgG~G-~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~-~--~p~~D~~~~~ 262 (306)
.+++|+=||+|.= ..+..|+++ .++.+++++|. |..++.+++ ...+++|+.+|..+ + ..+||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4579999999965 445666655 46788999999 888888876 47899999999876 2 3479998886
Q ss_pred hhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 263 WILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 263 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
-..- .+.++-.++|.++.+.|+| |++|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 6543 2333446899999999999 7777654
No 213
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.09 E-value=0.002 Score=51.22 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=42.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE 251 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~ 251 (306)
+++|||||.|.++..+++.+|+.+++++|. |...+.+++ ..++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 777776665 22457777665544
No 214
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.09 E-value=0.0022 Score=54.55 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=49.3
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC--C-ccEEEehh
Q 021867 200 LVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--P-ADAVLLKW 263 (306)
Q Consensus 200 vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~-~D~~~~~~ 263 (306)
|+||||-.|.+...|++...-.+++..|+ +..++.|++ ..++|++..+|-+++++ + .|.+++.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec
Confidence 68999999999999999998889999999 777777776 68899999999888654 3 77777653
No 215
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.07 E-value=0.0015 Score=53.97 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=71.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC-CCCCccEEEehhhhccCCc
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIPPADAVLLKWILHDWND 270 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p~~D~~~~~~vlh~~~d 270 (306)
.++.|+|.|+|-++.-.+++ .-+++.++. |.....|++ ...+++++.+|..+ .+..+|++++-..=.-+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999988766655 346888887 666666665 46789999999998 7777999988766555556
Q ss_pred hHHHHHHHHHHHhcCCCCCCcEEE
Q 021867 271 EECVKILKKCKEAVTSDDKKGKVI 294 (306)
Q Consensus 271 ~~~~~iL~~~~~~L~p~~~gg~ll 294 (306)
++.+.+++.+.+-|+- +++++
T Consensus 112 E~qVpV~n~vleFLr~---d~tii 132 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTII 132 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccc
Confidence 7778899999999987 57665
No 216
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.05 E-value=0.00069 Score=56.44 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=63.0
Q ss_pred HHHHhhchhh-hcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEeccCCCC---------
Q 021867 184 RVVIHKCKDV-FEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA--------- 252 (306)
Q Consensus 184 ~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~--------- 252 (306)
.++.+.+... ..+..++||+||++|+++..++++. +..+++++|+...- ....+.+..+|+.++
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----PLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----cccceeeeecccchhhHHHhhhhh
Confidence 3455555511 1245899999999999999999988 67899999995441 224455555555431
Q ss_pred C----CCccEEEehhhhc---cC--C----chHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 253 I----PPADAVLLKWILH---DW--N----DEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 253 ~----p~~D~~~~~~vlh---~~--~----d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
. ..+|+|++-.... ++ . -+-+...|.-+.+.|+| ||.+++-
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K 138 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIK 138 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEE
Confidence 1 2478887765321 11 1 12234445555677898 8877763
No 217
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=97.03 E-value=0.0011 Score=45.89 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=47.2
Q ss_pred HHHhCcccccccCCC-CCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecCh
Q 021867 35 AVELGIPDIINKHGK-PMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKN 105 (306)
Q Consensus 35 a~~lglfd~L~~~~~-~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (306)
..+-.|+.+|...++ ++|+.|||+.+|+ +...+.|+|..|...|+++.... .++.|..+.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~--------~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG--------TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC--------CCCceEeec
Confidence 345567788887644 3999999999999 67899999999999999998742 146676653
No 218
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.02 E-value=0.009 Score=46.73 Aligned_cols=96 Identities=20% Similarity=0.361 Sum_probs=64.5
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEecc-hHHHHhchhcC--CC---eEEEeccCCC---CCC---CccEEEehhhhc
Q 021867 200 LVDVGGGIGTVAKAIAKAFPN-LECTDFDL-PHVVNGLESDL--AN---LKYVGGDMFE---AIP---PADAVLLKWILH 266 (306)
Q Consensus 200 vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~~--~r---v~~~~~d~~~---~~p---~~D~~~~~~vlh 266 (306)
++|+|||.|... .+....+. ..++++|. +.++..++... .. +.+..+|... +.. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 44444443 36777888 55555543311 22 5788887764 333 38999 554444
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
++.+ ....++++.+.++| +|.+++.+.....
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 4444 46789999999999 8888887776443
No 219
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.92 E-value=0.00061 Score=43.55 Aligned_cols=44 Identities=23% Similarity=0.438 Sum_probs=38.3
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceee
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQ 85 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~ 85 (306)
++.|...|.+ +|.++.|||+.+|+ ++..+++.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 5567777876 89999999999999 78999999999999999874
No 220
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.89 E-value=0.0012 Score=50.94 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 27 INSMSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 27 ~~~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
-..++|.--.++.|+..|.+. ++.++.||++.+++ .+..+++.|+.|...|+++...
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r 64 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRK 64 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 456788888899999999753 68999999999999 6799999999999999999887
No 221
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.89 E-value=0.0013 Score=61.15 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=44.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE 251 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~ 251 (306)
.++||++||+|.++..+++... +++++|. +.+++.+++ ..++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998764 7999998 888888776 34589999999865
No 222
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0089 Score=49.24 Aligned_cols=99 Identities=15% Similarity=0.292 Sum_probs=67.1
Q ss_pred CCeEEEecCCccHHHHHHHHH-CCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCCC--CCccEEEehhhhccC
Q 021867 197 LNSLVDVGGGIGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAI--PPADAVLLKWILHDW 268 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~--p~~D~~~~~~vlh~~ 268 (306)
+.-+++||||+|..+..|++. .|+......|+ |+.++...+ ..-++..+..|+.+.. .+.|+.+++-..---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 778999999999988777654 46778889999 777666444 4556778888888732 357877775443221
Q ss_pred Cch-------------------HHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 269 NDE-------------------ECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 269 ~d~-------------------~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
+++ -..++|..+-..|.| .|.++++-.
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~ 169 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVAL 169 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeeh
Confidence 111 123456666677777 788877643
No 223
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.84 E-value=0.011 Score=56.53 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=70.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC---CCC-CccEEEehh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP-PADAVLLKW 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p-~~D~~~~~~ 263 (306)
....+|||+++|.|.=+..++....+ -.++..|+ +.-++..++ ...+|.+...|... ..+ .||.|++--
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 56689999999999999999998765 47889998 444444333 45678888888764 234 489888432
Q ss_pred h-------------hccCCchHH-------HHHHHHHHHhcCCCCCCcEEEEE
Q 021867 264 I-------------LHDWNDEEC-------VKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 264 v-------------lh~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
. ...|+.++. .+||.++.+.|+| ||+|+=.
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYS 241 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYS 241 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 2 234554332 6799999999999 8877543
No 224
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.75 E-value=0.017 Score=52.65 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=70.4
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEeccCCCCC--C-CccEEEehhhhccCCc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAI--P-PADAVLLKWILHDWND 270 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~--p-~~D~~~~~~vlh~~~d 270 (306)
+....++|||||++|.++..++++ +.+++.+|...+..... ..++|++..+|-+... + .+|.+++-.+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecccC---H
Confidence 356789999999999999999998 45999999755544333 5789999999988733 3 489988877642 2
Q ss_pred hHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 271 EECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 271 ~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
.++.+-+.+.+..+ -.+-.|+..-+|-+
T Consensus 283 ---~rva~lm~~Wl~~g--~cr~aIfnLKlpmk 310 (357)
T PRK11760 283 ---ARVAELMAQWLVNG--WCREAIFNLKLPMK 310 (357)
T ss_pred ---HHHHHHHHHHHhcC--cccEEEEEEEcCCC
Confidence 25566666777650 13456665555443
No 225
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.72 E-value=0.0028 Score=58.72 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=44.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE 251 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~ 251 (306)
.+|||++||+|.++..+++... +++++|. +++++.|++ ..++++|+.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999999998874 7999998 888888886 34579999999865
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.69 E-value=0.018 Score=58.23 Aligned_cols=111 Identities=12% Similarity=0.116 Sum_probs=72.3
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHC------------------------------------------CC
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF------------------------------------------PN 220 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~------------------------------------------p~ 220 (306)
+..++..-.| ..+...++|-.||+|.++++.+... ..
T Consensus 178 Aaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 4444443332 1446899999999999998887531 12
Q ss_pred CeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC----CccEEEehhhhcc-CCc-hHHHHHHHHHHHhcC-
Q 021867 221 LECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP----PADAVLLKWILHD-WND-EECVKILKKCKEAVT- 285 (306)
Q Consensus 221 ~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p----~~D~~~~~~vlh~-~~d-~~~~~iL~~~~~~L~- 285 (306)
.+++++|+ +.+++.|+. ..++|++..+|+.+ +.+ .+|+|+++=..-. +.+ ++...+.+.+.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36899998 888888887 45679999999987 333 3898877644321 222 333445455444444
Q ss_pred --CCCCCcEEEEEe
Q 021867 286 --SDDKKGKVIIID 297 (306)
Q Consensus 286 --p~~~gg~lli~e 297 (306)
+ |+++.|+-
T Consensus 337 ~~~---g~~~~llt 347 (702)
T PRK11783 337 QFG---GWNAALFS 347 (702)
T ss_pred hCC---CCeEEEEe
Confidence 5 77776654
No 227
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.68 E-value=0.0018 Score=56.80 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=49.1
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK 108 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (306)
+.|+++|...+.++++.|||+++|+ +...+.|+|..|+..|++++++. .++|++++..-
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~---------~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE---------DGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCcEeehHHHH
Confidence 4567777764455779999999999 67899999999999999999963 57899998554
No 228
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.66 E-value=0.0099 Score=53.92 Aligned_cols=99 Identities=18% Similarity=0.302 Sum_probs=65.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEecc-hHHHHhchh-------cCCCeEEEeccCCC-C-CC--
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKA-------FPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFE-A-IP-- 254 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~-~-~p-- 254 (306)
.....+|+|-.||+|.++.++.+. .+..++.++|+ +.++..++- ......+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345678999999999999998874 47889999999 666655543 23445688889886 2 22
Q ss_pred -CccEEEehhhh--ccCC------------------chHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 255 -PADAVLLKWIL--HDWN------------------DEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 255 -~~D~~~~~~vl--h~~~------------------d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
.||+|+..=.+ ..|. ..+ ..++..+.+.|++ ||++.++
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~---~G~~~~I 182 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKP---GGRAAII 182 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEE---EEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhccc---ccceeEE
Confidence 58999875433 2121 122 2478899999998 8986554
No 229
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.65 E-value=0.0021 Score=57.42 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=48.8
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchh
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKL 109 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (306)
+.|+++|.+.++++|+.|||+.+|+ +...+.|+|..|+..||+.++.. .++|++.+....
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~---------~~~Y~lG~~l~~ 90 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE---------LGHWAIGAHAFI 90 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCeEecCHHHHH
Confidence 4456666654578999999999999 67899999999999999998642 588999875543
No 230
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.012 Score=48.76 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=64.7
Q ss_pred HhhchhhhcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEec-cCCCC---------CC-
Q 021867 187 IHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGG-DMFEA---------IP- 254 (306)
Q Consensus 187 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~-d~~~~---------~p- 254 (306)
-++|. .+.+..+|+|+||..|.++....++- |+-.+.++|+-+.. ..+.+++..+ |+.+| .|
T Consensus 61 ndKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 61 NDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred hhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 34454 35678999999999999998887776 99999999984432 2345566665 66553 34
Q ss_pred -CccEEEehhhh---------ccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 255 -PADAVLLKWIL---------HDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 255 -~~D~~~~~~vl---------h~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
.+|+|+.-+.- |+-.-+-|...|.-+...+.| +|.+++
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvc 182 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVC 182 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEE
Confidence 26777654432 112224455555555566677 677665
No 231
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.004 Score=49.34 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=52.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC-eEEEecc-hHHHHhchh----cCCCeEEEeccCCCCCC---CccEEEehhhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP---PADAVLLKWIL 265 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p---~~D~~~~~~vl 265 (306)
-..+.+.|+|||.|-++. +-.+|.. .++++|+ |+.++.+++ ..=.+.+.+.|+.++.+ -||..++.-.+
T Consensus 47 iEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 346889999999999884 4445555 5899999 999998876 23346788888888544 28888887766
No 232
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.62 E-value=0.007 Score=43.65 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=39.9
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK 108 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (306)
+++|.++||+.+++ ++..+++++..|...|+++... |-.|.|.++...+
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~--------G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR--------GRGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET--------STTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC--------CCCCceeecCCHH
Confidence 56999999999999 7899999999999999998775 2258898887554
No 233
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=96.59 E-value=0.0024 Score=56.94 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=48.7
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK 108 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (306)
+.|+++|..+++++|+.|||+.+|+ +...+.|+|..|+..|++.++.. .+.|++.....
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~---------~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ---------LGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCeEEecHHHH
Confidence 4566777665578999999999999 67899999999999999988743 57899887543
No 234
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.56 E-value=0.0024 Score=56.03 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=48.6
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchh
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKL 109 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (306)
+.|+++|..+..|+|+.|||+.+|+ +...+.|+|..|+..|+++++ .+.|++.+....
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~-----------~~~Y~lG~~~~~ 69 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSD-----------GRLFWLTPRVLR 69 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-----------CCEEEecHHHHH
Confidence 4567777765578999999999999 678999999999999999875 478999885443
No 235
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.49 E-value=0.0039 Score=57.61 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=77.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCC--CccEEEehhhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVLLKWIL 265 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~~~~~~vl 265 (306)
....++|+|||.|.....+. .+...+.+++|. +.-+.++.. ..++..++.+|+.+ |++ .+|.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~-~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIA-VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHH-HhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 34478999999999988877 455678888888 333333332 45666669999998 566 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 266 HDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
.+.++. ...+++++++++| ||..++.|.+.-
T Consensus 189 ~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~ 219 (364)
T KOG1269|consen 189 CHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKT 219 (364)
T ss_pred ccCCcH--HHHHHHHhcccCC---CceEEeHHHHHh
Confidence 888886 4779999999999 899888877654
No 236
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.49 E-value=0.0014 Score=49.46 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=40.5
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEecchH----HHHhchh--cCCCeEEEeccCCCC---CC--CccEEEehhhhc
Q 021867 201 VDVGGGIGTVAKAIAKAFPNL---ECTDFDLPH----VVNGLES--DLANLKYVGGDMFEA---IP--PADAVLLKWILH 266 (306)
Q Consensus 201 lDvGgG~G~~~~~l~~~~p~~---~~~~~Dl~~----~~~~a~~--~~~rv~~~~~d~~~~---~p--~~D~~~~~~vlh 266 (306)
|+||+..|..+..+++..+.. +++.+|... +.+..++ ..++++++.+|+.+- .+ .+|++++-- -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999998888877655 589999833 3333332 577899999998652 22 578887754 23
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
. .+....-++.+.+.|+| ||.+++.|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 2 34556779999999999 77777665
No 237
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=96.46 E-value=0.0033 Score=55.72 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=49.8
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhh
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLL 110 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (306)
+.|++.|..+++++|+.|||+.+|+ +...+.|+|+.|...|++.+... .+.|++++....|
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~---------~~~Y~Lg~~~~~l 74 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS---------DDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC---------CCcEEEcHHHHHH
Confidence 4566667655567999999999999 67899999999999999998753 5789999865443
No 238
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.40 E-value=0.022 Score=47.57 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=69.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCCCCCccEEEehhhhccC
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVLLKWILHDW 268 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~~~~~~vlh~~ 268 (306)
+-+.++|||+|.|+|..++.-++... ..++..|. |..++.++- ..-.|.+...|..-+-+.+|+++++.++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 45678999999999998887776643 34566666 433333332 3445778888877645579999999999765
Q ss_pred CchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 269 NDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
+. +.+++. ....+.. +|..++|-|+-.
T Consensus 156 ~~--a~~l~~-~~~~l~~--~g~~vlvgdp~R 182 (218)
T COG3897 156 TE--ADRLIP-WKDRLAE--AGAAVLVGDPGR 182 (218)
T ss_pred hH--HHHHHH-HHHHHHh--CCCEEEEeCCCC
Confidence 54 456777 6666665 267777776643
No 239
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.34 E-value=0.021 Score=48.79 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=72.4
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCC-eEEEecc-hHHHHhchh------cCCCeEEEeccCCCCC----C-----Cc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI----P-----PA 256 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~----p-----~~ 256 (306)
.-++++++|||.=+|.-+...+.+.|.- +++.+|. +...+.+.+ ...+|+++.++..+.. + .|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 4568999999999999999999999874 7889998 344444433 6888999999887632 1 37
Q ss_pred cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 257 DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 257 D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
|++|+-. |-+. ......++.+.+++ |.++++|.++
T Consensus 151 DfaFvDa----dK~n-Y~~y~e~~l~Llr~----GGvi~~DNvl 185 (237)
T KOG1663|consen 151 DFAFVDA----DKDN-YSNYYERLLRLLRV----GGVIVVDNVL 185 (237)
T ss_pred eEEEEcc----chHH-HHHHHHHHHhhccc----ccEEEEeccc
Confidence 8887643 4443 45889999999998 5556666543
No 240
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=96.33 E-value=0.0045 Score=54.67 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=48.1
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchh
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKL 109 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (306)
+.|++.|... +++|+.|||+.+|+ +...+.|+|+.|+..|++.+... .++|++.+....
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~---------~~~Y~lG~~~~~ 75 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE---------SEKYSLTLKLFE 75 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCcEEecHHHHH
Confidence 4456666654 68999999999999 67899999999999999998742 588999986543
No 241
>PHA00738 putative HTH transcription regulator
Probab=96.27 E-value=0.0052 Score=46.05 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=43.7
Q ss_pred HHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecc
Q 021867 35 AVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 35 a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
-.|..|++.|.. +++.++.+|++.+++ ++..+++.|+.|...|++.....
T Consensus 12 ptRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~ 61 (108)
T PHA00738 12 ILRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKE 61 (108)
T ss_pred HHHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEE
Confidence 357778888876 347999999999999 78999999999999999999873
No 242
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.25 E-value=0.0056 Score=53.80 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=59.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC-eEEEecc-hHHHHhchh---------------------------------cCC
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES---------------------------------DLA 240 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~---------------------------------~~~ 240 (306)
+..+++|||+|.-.+ .++...+.. +++..|. +.-.+..++ ...
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 467999999998644 233333333 3677776 322221111 122
Q ss_pred CeE-EEeccCCCC--C------CC-ccEEEehhhhccCC--chHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 241 NLK-YVGGDMFEA--I------PP-ADAVLLKWILHDWN--DEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 241 rv~-~~~~d~~~~--~------p~-~D~~~~~~vlh~~~--d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
.|+ ++..|..++ + |. +|++++..+|.-.. .++-.+.++++.+.||| ||.|+++...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l 201 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVL 201 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEc
Confidence 344 667788872 2 33 99999999996543 35567889999999999 8988887653
No 243
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=96.24 E-value=0.025 Score=38.50 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=38.7
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecCh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKN 105 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (306)
.++|..+||+.+|+ +...+.++|+.|...|++.... .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~----------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG----------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC----------CCeEEeCC
Confidence 68999999999999 6899999999999999999874 36777654
No 244
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.22 E-value=0.02 Score=51.65 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=55.2
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE 251 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~ 251 (306)
.+++++.+. ......+||.=+|.|+.+..++++.|+.+++++|. |.+++.+++ ..+|++++.++|.+
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 455666655 45567999999999999999999998899999999 888888876 34689999988865
No 245
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.21 E-value=0.0018 Score=44.84 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=39.3
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+..|+..|-.. ++.|+.+||+.+|+ +...+++.|+-|...|++.+..
T Consensus 10 E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 34455555432 79999999999999 7899999999999999999986
No 246
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.21 E-value=0.0043 Score=39.66 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=36.7
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCcee
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFA 84 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~ 84 (306)
+..|+..|.++ ++.|..|||+.+|+ +...+.+.++-|...|+++
T Consensus 5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 45677788775 67999999999999 7899999999999999985
No 247
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.19 E-value=0.017 Score=50.17 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=69.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCCCC--CccEEEehhhhcc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVLLKWILHD 267 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~~~~~~vlh~ 267 (306)
..+.+|+|||||-=-++.-.....|++++++.|+ ...++...+ .....++...|.....| .+|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4489999999999999988888899999999999 666666555 56778888889998544 4899999999997
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
....+ ...--++.+.++. -.++|..+.
T Consensus 184 le~q~-~g~g~~ll~~~~~----~~~vVSfPt 210 (251)
T PF07091_consen 184 LERQR-RGAGLELLDALRS----PHVVVSFPT 210 (251)
T ss_dssp HHHHS-TTHHHHHHHHSCE----SEEEEEEES
T ss_pred HHHHh-cchHHHHHHHhCC----CeEEEeccc
Confidence 65543 2444555566653 466665544
No 248
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=96.15 E-value=0.015 Score=47.64 Aligned_cols=64 Identities=16% Similarity=0.319 Sum_probs=48.0
Q ss_pred HHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch
Q 021867 30 MSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK 108 (306)
Q Consensus 30 ~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (306)
.||++.+.+. | ...++++|+++||+.+++ ++..+.++|..|...|++.... |..|.|.+.....
T Consensus 9 yAl~~l~~lA-~---~~~~~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~r--------G~~GGy~Lar~p~ 72 (164)
T PRK10857 9 YAVTAMLDVA-L---NSEAGPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVR--------GPGGGYLLGKDAS 72 (164)
T ss_pred HHHHHHHHHH-h---CCCCCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC--------CCCCCeeccCCHH
Confidence 3455555554 2 222368999999999999 6899999999999999999764 2357798876544
No 249
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.06 E-value=0.043 Score=48.55 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=75.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEeccCCCCCC------C-----
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAIP------P----- 255 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~p------~----- 255 (306)
.+...||.+|||-=.....+.. -+++++.=+|+|++++.-++ ..+++++++.|+.+.+. +
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 4566899999998776666632 22578888889999876444 35789999999974211 1
Q ss_pred ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 256 ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
.-++++--++.+++.+++.++|+.+.+...| |+ .++.|.+-+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRP 200 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccc
Confidence 3577888899999999999999999998877 55 455666543
No 250
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.03 E-value=0.0064 Score=41.74 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhc
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNAS 107 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (306)
+++.+..+||+.+++ +...+.+.++.|...|++++....+. .-...|.+|+.+
T Consensus 16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~d----~R~~~~~LT~~G 68 (68)
T PF13463_consen 16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPHD----KRSKRYRLTPAG 68 (68)
T ss_dssp TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESSC----TTSEEEEE-HHH
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCCc----CCeeEEEeCCCC
Confidence 489999999999999 78999999999999999987753110 012357887753
No 251
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=96.01 E-value=0.015 Score=36.70 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.5
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
-+.|..+||+.+|+ +...+.+.|+.|...|+++..
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~ 41 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISRE 41 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEe
Confidence 47899999999999 679999999999999999876
No 252
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.00 E-value=0.017 Score=48.37 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=66.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCC------C-CCccEEEe
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA------I-PPADAVLL 261 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~------~-p~~D~~~~ 261 (306)
...++||+=||+|.++.+.+.+.- .+++.+|. +..+...++ ..++++++..|.+.. . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 468999999999999999888763 37999998 666666665 455799999997651 1 25999988
Q ss_pred hhhhccCCchHHHHHHHHHH--HhcCCCCCCcEEEEEeeecC
Q 021867 262 KWILHDWNDEECVKILKKCK--EAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 262 ~~vlh~~~d~~~~~iL~~~~--~~L~p~~~gg~lli~e~~~~ 301 (306)
-=... .... ...++..+. ..|++ +.++|+|.-..
T Consensus 121 DPPY~-~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYA-KGLY-YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STT-SCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcc-cchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 64333 2221 245666665 67787 67778887544
No 253
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.078 Score=46.57 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=71.2
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHC-CCCeEEEecchHH-HHhchh------cCCCeEEEeccCCCC-CC
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAF-PNLECTDFDLPHV-VNGLES------DLANLKYVGGDMFEA-IP 254 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~-~~~a~~------~~~rv~~~~~d~~~~-~p 254 (306)
..++..++ .....+||+-|.|+|.++..|++.- |.-++.-+|.-+. .+.|.+ ..++|++...|+... ++
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 44566666 6788999999999999999998875 6668888888322 223333 688999999998772 32
Q ss_pred ----CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 255 ----PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 255 ----~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
.+|.|++- .+.+. ..+-.++++|+.+ ||+++-+-+++
T Consensus 173 ~ks~~aDaVFLD-----lPaPw--~AiPha~~~lk~~--g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFLD-----LPAPW--EAIPHAAKILKDE--GGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEEc-----CCChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence 38998874 33332 1234444456652 56776665544
No 254
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.96 E-value=0.04 Score=53.85 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=46.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEecc-hHHHHhchh---cC--CCeEEEeccCCCC--------C
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPN--------LECTDFDL-PHVVNGLES---DL--ANLKYVGGDMFEA--------I 253 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl-~~~~~~a~~---~~--~rv~~~~~d~~~~--------~ 253 (306)
...+|+|.+||+|.++..+++..+. ..+.++|+ +..+..++. .. ..+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4568999999999999999987753 46788998 666666654 11 2355566665431 1
Q ss_pred CCccEEEeh
Q 021867 254 PPADAVLLK 262 (306)
Q Consensus 254 p~~D~~~~~ 262 (306)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 258888764
No 255
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.07 Score=46.22 Aligned_cols=103 Identities=20% Similarity=0.372 Sum_probs=76.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC----CeEEEecch-HHHHh-chh---cCCC--eEEEeccCCCC---CCC---cc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPN----LECTDFDLP-HVVNG-LES---DLAN--LKYVGGDMFEA---IPP---AD 257 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~Dl~-~~~~~-a~~---~~~r--v~~~~~d~~~~---~p~---~D 257 (306)
-+..+++|+|.|+..-...|...+.+ ++.+-+|+. .++.. |++ ..+. |.-+++|+..+ .|. ==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888888877 789999983 33332 222 3344 44566788653 342 24
Q ss_pred EEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE-Eeeec
Q 021867 258 AVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVII-IDMIR 300 (306)
Q Consensus 258 ~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli-~e~~~ 300 (306)
.+++...|-+++..+|..+|..++.+|+| |-.+++ +|...
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvDl~k 197 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVDLRK 197 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEeccccC
Confidence 66789999999999999999999999999 666665 55443
No 256
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.78 E-value=0.029 Score=50.61 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=51.4
Q ss_pred HHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCC
Q 021867 183 TRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE 251 (306)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~ 251 (306)
.+++++.+. ..+...+||.=-|.|+++..+++++|+.+++++|. |.+++.|++ ..+|+.++.++|-+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 456666655 56678999999999999999999999999999999 888888876 46899999998865
No 257
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.78 E-value=0.099 Score=44.53 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=72.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC---CccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~~~~~~v 264 (306)
....++.||||-.|++...+.+.+|..+++..|+ +...+.|.+ ..+|++...+|-+.++. ..|++++.-.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 3455699999999999999999999999999998 555555544 78999999999988643 3787765432
Q ss_pred hccCCchHHHHHHH---------------------HHHHhcCCCCCCcEEEEEeeecCCCC
Q 021867 265 LHDWNDEECVKILK---------------------KCKEAVTSDDKKGKVIIIDMIRENKK 304 (306)
Q Consensus 265 lh~~~d~~~~~iL~---------------------~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (306)
= -.-.+.||. .+|+.|.. .++-++.|.++.|++
T Consensus 95 G----G~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~---~~~~I~~E~ileE~~ 148 (226)
T COG2384 95 G----GTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSA---NSYEIKAETILEEDG 148 (226)
T ss_pred c----HHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHh---CCceeeeeeeecccC
Confidence 1 111122222 35555655 577777888777754
No 258
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.66 E-value=0.034 Score=44.00 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=41.6
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKL 109 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (306)
+++|+++||+.+++ ++..++++|+.|...|++.... |..|.|.++.....
T Consensus 24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~--------G~~Ggy~l~~~~~~ 73 (135)
T TIGR02010 24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVR--------GPGGGYQLGRPAED 73 (135)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEe--------CCCCCEeccCCHHH
Confidence 68999999999999 6899999999999999998754 22567888775443
No 259
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.50 E-value=0.017 Score=40.97 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=42.1
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
|+..|.. ++.+..+|+..+++ +...+.+.|+.|...|+++.. .+.|.+|+.+..+.
T Consensus 11 IL~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-----------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 11 ILKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-----------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-----------TTEEEE-HHHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-----------CCEEEECccHHHHH
Confidence 3444443 78999999999999 789999999999999999775 59999999998543
No 260
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.48 E-value=0.066 Score=48.98 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC--CC-CCccEEEehhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--AI-PPADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~~-p~~D~~~~~~v 264 (306)
....+|||.=+|.|.++..+++...- +++.+|+ |+.++..++ ..++|+.+.||..+ +. +.||=|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34789999999999999999986543 4999999 888887766 56779999999988 33 46999998775
Q ss_pred hccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 265 LHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 265 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
- .+.+++-.+.+.+++ ||.+...+.+-.++
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence 4 234677788888888 78888888876655
No 261
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.42 E-value=0.087 Score=44.67 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=54.8
Q ss_pred cCCCeEEEecCCccHHHHH---HHHHC-CCCeEEEecc--hHHHHhchh---cCCCeEEEeccCCCC-----CC------
Q 021867 195 EGLNSLVDVGGGIGTVAKA---IAKAF-PNLECTDFDL--PHVVNGLES---DLANLKYVGGDMFEA-----IP------ 254 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~---l~~~~-p~~~~~~~Dl--~~~~~~a~~---~~~rv~~~~~d~~~~-----~p------ 254 (306)
-++.+|+++|--.|+-+.. +++.+ ++.+++++|+ +..-..+.+ ..+||+++.||-.++ +.
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 3578999999877766654 44555 7889999998 222222221 569999999998763 11
Q ss_pred CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 255 PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 255 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
...+|+ -..-|.+.. +.+.|+.....+++ |+.++|-|+.+.
T Consensus 111 ~~vlVi-lDs~H~~~h--vl~eL~~y~plv~~---G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 111 HPVLVI-LDSSHTHEH--VLAELEAYAPLVSP---GSYLIVEDTIIE 151 (206)
T ss_dssp SSEEEE-ESS----SS--HHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred CceEEE-ECCCccHHH--HHHHHHHhCccCCC---CCEEEEEecccc
Confidence 123333 333343333 57789998899998 899998887653
No 262
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=95.40 E-value=0.025 Score=48.57 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=69.1
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEeccCCC---CCC--CccEEE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFE---AIP--PADAVL 260 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~---~~p--~~D~~~ 260 (306)
.++..+|||.=.|-|+.+++.+++.. ..++-++- |.|++.|.- ...+|+++-||.++ .++ +||+++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 35678999999999999999998853 25666665 888887764 24478999999988 344 378764
Q ss_pred ehhhhccCCc------hHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 261 LKWILHDWND------EECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 261 ~~~vlh~~~d------~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
||-|. --...+-+++++.|+| ||+++=
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFH 243 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFH 243 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEE
Confidence 55432 1235688999999999 898863
No 263
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.40 E-value=0.097 Score=48.78 Aligned_cols=90 Identities=13% Similarity=0.211 Sum_probs=69.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCC-eEEEecc-hHHHHhchh-----cCCCeEEEeccCCCC--C--CCccEEEehhhhc
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA--I--PPADAVLLKWILH 266 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~--~--p~~D~~~~~~vlh 266 (306)
.+|||.-||+|..++..+.+.++. +++..|+ |..++.+++ ..+++++..+|...- . ..||+|.+-= .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 589999999999999999986554 7899999 888887766 234688999998762 2 2589998843 2
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
. .+ ..++..+.+.+++ +|.|.|.
T Consensus 124 G--s~--~~fld~al~~~~~---~glL~vT 146 (374)
T TIGR00308 124 G--TP--APFVDSAIQASAE---RGLLLVT 146 (374)
T ss_pred C--Cc--HHHHHHHHHhccc---CCEEEEE
Confidence 2 21 3578889899988 7888886
No 264
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=95.33 E-value=0.038 Score=36.13 Aligned_cols=43 Identities=35% Similarity=0.406 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHH
Q 021867 28 NSMSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRIL 77 (306)
Q Consensus 28 ~~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L 77 (306)
.-.+|.+|.+.|-|+. + ...|..|||+.+|+ ++..+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-P---R~~tl~elA~~lgi---s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-P---RRITLEELAEELGI---SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-C---CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 4568999999999986 3 46999999999999 567777777643
No 265
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.33 E-value=0.02 Score=48.68 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=46.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE 251 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~ 251 (306)
....|+|.-||.|+-.+.++.++|. ++.+|+ |.-+..|+. ..+||+|.+||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5678999999999999999999886 667777 777777776 46799999999986
No 266
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.23 Score=46.04 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=67.9
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCC---------------------------------------eEEEecc-hHHHH
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNL---------------------------------------ECTDFDL-PHVVN 233 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~~~~Dl-~~~~~ 233 (306)
+.+...++|==||+|+++++.+...+++ .++++|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 4455799999999999999999888642 2679999 88888
Q ss_pred hchh------cCCCeEEEeccCCC-CCC--CccEEEehhhhcc-CCchHHHH-----HHHHHHHhcCCCCCCcEEEEE
Q 021867 234 GLES------DLANLKYVGGDMFE-AIP--PADAVLLKWILHD-WNDEECVK-----ILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 234 ~a~~------~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~-~~d~~~~~-----iL~~~~~~L~p~~~gg~lli~ 296 (306)
.|+. ..+.|+|..+|+.. +-| .+|+++++=.--. +.++..+. +.+.+++.++. -++.+++
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~---ws~~v~t 343 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG---WSRYVFT 343 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC---CceEEEE
Confidence 8876 68899999999876 333 5788777543321 33333333 33444455553 3455443
No 267
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.30 E-value=0.013 Score=39.34 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=37.5
Q ss_pred hCcccccccCCC-CCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGK-PMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~-~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.|+-.|...++ ++|+.+||+.+++ ++..+.++++.|...|++++..
T Consensus 8 ~~vL~~l~~~~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 8 FRVLMALARHPGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHSTTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 344455555432 2899999999999 7899999999999999999986
No 268
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.28 E-value=0.18 Score=42.90 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=73.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchh----cCCCeEEEeccCCC---CCC--CccEEEehhhh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVLLKWIL 265 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~~~~~~vl 265 (306)
.+..+||.||=|-|-....+.++-|..+.|+---|.|.++-+. ..++|....|-..+ ..| .||-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 6788999999999999988888888877776666999998877 67888888874443 344 48877664431
Q ss_pred ccCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 266 HDWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
-. -++...+.+.+.+.||| +|.+-.+.
T Consensus 180 e~--yEdl~~~hqh~~rLLkP---~gv~SyfN 206 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLKP---EGVFSYFN 206 (271)
T ss_pred hH--HHHHHHHHHHHhhhcCC---CceEEEec
Confidence 11 24567888999999999 78775543
No 269
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.071 Score=42.49 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=67.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CCCCccEEEehhhhc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVLLKWILH 266 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~~~~~~vlh 266 (306)
....+.+|+|.|.|....+.++.. -...+++++ |..+..++- ...+..|..-|.++ +...|..+++.-+=.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence 334789999999999988877765 346788898 666665543 67889999999998 666554333322211
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
-.+| +-.+++.-|+. +.+++-+-+-+|+
T Consensus 150 ~m~d-----Le~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 150 VMPD-----LEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred HHhh-----hHHHHHhhCcC---CCeEEEEecCCCc
Confidence 1222 33445556777 7899888877775
No 270
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=95.18 E-value=0.034 Score=43.63 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=41.2
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKL 109 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (306)
+++|..+||+.+++ ++..++++|+.|...|++.... +..|.|.++.....
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~--------g~~ggy~l~~~~~~ 73 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVR--------GPGGGYRLARPPEE 73 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecc--------CCCCCccCCCCHHH
Confidence 59999999999999 6899999999999999998753 12467888765543
No 271
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=95.15 E-value=0.011 Score=42.40 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=47.7
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchh
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKL 109 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (306)
++++|...|... +.+++.+|.+.+|+ +...+++.|+.|...|+++....-..+ .-.-.|++|+.++.
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~~---~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEGR---RPRTWYSLTDKGRE 67 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SSS-----EEEEEE-HHHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccCC---CCeEEEEECHHHHH
Confidence 466777777753 68999999999999 679999999999999999987631100 00124888888873
No 272
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.011 Score=47.70 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCeEEEecCC-ccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------cCCCeEEEeccCCCC-----CCCccEEE
Q 021867 196 GLNSLVDVGGG-IGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFEA-----IPPADAVL 260 (306)
Q Consensus 196 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~~-----~p~~D~~~ 260 (306)
+..+||++||| +|..+..++..-|...+.+.|- ...++..++ ...++..+..+.... +..||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 34789999999 5666677788888888888887 344444443 244555555554442 22599999
Q ss_pred ehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 261 LKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 261 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
+..++- =|+-...+.+.|...|+| .|+-++.-+
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p---~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRP---SGRALLFSP 141 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCc---ccceeEecC
Confidence 999983 466677889999999999 677666543
No 273
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=95.12 E-value=0.015 Score=39.31 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=36.1
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|.+.|....+|++..|||+.+|+ +...++++|..|...|.+++.+
T Consensus 5 Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 5 ILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp HHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 44555542379999999999999 7899999999999999999865
No 274
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=94.99 E-value=0.027 Score=38.74 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=44.3
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCC--CcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPS--KTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK 108 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~--~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (306)
|+++|.++++|++..+|++.+..... ++..++|.|+.|...|+..+.. .+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g----------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG----------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC----------CcccccCHHHH
Confidence 45677777799999999999965322 3489999999999999777654 34456777654
No 275
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.96 E-value=0.11 Score=43.38 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=67.2
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc--hHH-----------HHhchh-cCCCeEEEeccCCC-CCC-Ccc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL--PHV-----------VNGLES-DLANLKYVGGDMFE-AIP-PAD 257 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~-----------~~~a~~-~~~rv~~~~~d~~~-~~p-~~D 257 (306)
+....+|+|+=.|.|++..-|...- ..++++.-. .+. -..+++ ...+++.+..+... ..| +.|
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~v-gp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAV-GPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhc-CCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 6778999999999999998887643 334433322 111 111211 34556665555554 222 467
Q ss_pred EEEehhhhccC-----CchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 258 AVLLKWILHDW-----NDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 258 ~~~~~~vlh~~-----~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
+++....-|+. ...-+.++-+.++++||| ||.++|.|.....
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~p 171 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADP 171 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccC
Confidence 77664444433 234567889999999999 8998888876654
No 276
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=94.91 E-value=0.087 Score=40.49 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
.++.++..|..+ ++.|..+||+.+++ +...+.++++-|...|++++..... |.-.-.+.+|+.+..+.
T Consensus 29 ~q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~----D~R~~~v~LT~~G~~~~ 96 (118)
T TIGR02337 29 QQWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASN----DQRRVYISLTPKGQALY 96 (118)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCC----CCCeeEEEECHhHHHHH
Confidence 345567777654 68999999999999 6789999999999999999875211 00123588998887554
No 277
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.82 E-value=0.048 Score=43.52 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
+++.++.+||+.+++ ++..+.+.++.|...|++.... .+.|.+|+.+..+.
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~----------~~~i~LT~~G~~~a 70 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK----------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec----------CceEEECHHHHHHH
Confidence 378999999999999 6789999999999999999764 46799999887543
No 278
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=94.80 E-value=0.018 Score=39.94 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=36.6
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecc
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
|.+.|... +.+|..+||..+++ ++..++.+|..|+..|.+.+...
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~~ 49 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVDM 49 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEecC
Confidence 34566654 78999999999999 78999999999999999998863
No 279
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.73 E-value=0.12 Score=47.74 Aligned_cols=103 Identities=13% Similarity=0.240 Sum_probs=72.7
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc---hHHHHhchh------------cCCCeEEEeccCCCC------
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL---PHVVNGLES------------DLANLKYVGGDMFEA------ 252 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl---~~~~~~a~~------------~~~rv~~~~~d~~~~------ 252 (306)
........|+|+|.|......+....--.-+|+.+ |.-++..+. ....++...++|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 34567899999999998877765544444556555 544444332 245688899999885
Q ss_pred CCCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 253 IPPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 253 ~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
++.+++++..++.- +++... =+.++..-+++ |.+++-.+.+++-
T Consensus 270 ~~eatvi~vNN~~F--dp~L~l-r~~eil~~ck~---gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF--DPELKL-RSKEILQKCKD---GTRIISSKPLVPR 313 (419)
T ss_pred hhcceEEEEecccC--CHHHHH-hhHHHHhhCCC---cceEecccccccc
Confidence 34699999999984 444333 34588888898 8999988888773
No 280
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.67 E-value=0.42 Score=42.37 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=64.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecch-HH-------HHh---chh---------------------------
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLP-HV-------VNG---LES--------------------------- 237 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~-~~-------~~~---a~~--------------------------- 237 (306)
...+||-=|||-|+++-+++++. ..+.+-+.. .| +.. ..+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45789999999999999999984 344444541 11 111 010
Q ss_pred --------cCCCeEEEeccCCC--CCC----CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 238 --------DLANLKYVGGDMFE--AIP----PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 238 --------~~~rv~~~~~d~~~--~~p----~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
..++++..+|||.+ +.+ .+|+|+..+.+ |- -+....-|+.|.+.||| ||..+=+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DT-A~Ni~~Yi~tI~~lLkp---gG~WIN~ 201 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DT-AENIIEYIETIEHLLKP---GGYWINF 201 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-ec-hHHHHHHHHHHHHHhcc---CCEEEec
Confidence 14578999999988 233 48999888665 22 34467889999999999 7755433
No 281
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=94.65 E-value=0.034 Score=43.15 Aligned_cols=48 Identities=21% Similarity=0.446 Sum_probs=39.0
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecc
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
..+|..|-...+|.|+++||+.++. +...++|-|+-|...|++.+...
T Consensus 30 v~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 30 VEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 3344444311389999999999999 78999999999999999999874
No 282
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.58 E-value=0.12 Score=48.38 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEeccCCCCC----C---CccEEE
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEAI----P---PADAVL 260 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~~----p---~~D~~~ 260 (306)
..++|||+=|=||.++...+.... .+++.+|+ ..+++.|++ ..+++.|+.+|.|+-+ . .||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 378999999999999998887642 27999999 788888887 4678999999999732 2 499998
Q ss_pred ehhhhc------cCC-chHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 261 LKWILH------DWN-DEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 261 ~~~vlh------~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
+-=.-- -|+ ..+-..++..+.+.|+| ||.++++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~ 337 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSC 337 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 732211 122 12346789999999999 898887643
No 283
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.57 E-value=0.043 Score=44.33 Aligned_cols=60 Identities=15% Similarity=0.319 Sum_probs=47.7
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhhcCCCCChHHHHHHh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLLKDNPLSVTPFLQAM 125 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~l~~~~~~~ 125 (306)
++.|+++||+..|+ ++..++++|..|...|+++-.. |-.|.|.++...... ++...+...
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~r--------G~~GGy~Lar~~~~I------sl~dVv~av 83 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVR--------GKGGGYRLARPPEEI------TLGDVVRAL 83 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeec--------CCCCCccCCCChHHC------cHHHHHHHh
Confidence 48999999999999 6899999999999999999886 336889888765433 355555443
No 284
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.56 E-value=0.44 Score=40.86 Aligned_cols=106 Identities=10% Similarity=0.121 Sum_probs=70.7
Q ss_pred HHHHHhhch-hhhcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-h----HHHHhchhcCCCeEEEeccCCCCC--
Q 021867 183 TRVVIHKCK-DVFEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-P----HVVNGLESDLANLKYVGGDMFEAI-- 253 (306)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~----~~~~~a~~~~~rv~~~~~d~~~~~-- 253 (306)
+..++..++ -.+....+||-+|..+|....+++.--. +-.+.+++. | +.+..|+ ...+|--+-.|...|.
T Consensus 59 aAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y 137 (229)
T PF01269_consen 59 AAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK-KRPNIIPILEDARHPEKY 137 (229)
T ss_dssp HHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HSTTEEEEES-TTSGGGG
T ss_pred HHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc-cCCceeeeeccCCChHHh
Confidence 344444443 1266788999999999999999988654 556777777 3 4455555 5788988889998863
Q ss_pred ----CCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 254 ----PPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 254 ----p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+..|+++.--.- .+++.-++.++..-||+ ||.++|.
T Consensus 138 ~~lv~~VDvI~~DVaQ----p~Qa~I~~~Na~~fLk~---gG~~~i~ 177 (229)
T PF01269_consen 138 RMLVEMVDVIFQDVAQ----PDQARIAALNARHFLKP---GGHLIIS 177 (229)
T ss_dssp TTTS--EEEEEEE-SS----TTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcccccccEEEecCCC----hHHHHHHHHHHHhhccC---CcEEEEE
Confidence 247887764432 34566778899999999 8888764
No 285
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=94.47 E-value=0.021 Score=37.98 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=37.4
Q ss_pred CcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 39 GIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.++..|... ++++..+||+.+++ +...+.++++.|...|++++..
T Consensus 7 ~iL~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 7 RILRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 344445544 68999999999999 7899999999999999999886
No 286
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=94.39 E-value=0.057 Score=39.70 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=48.0
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
++.++..|... ++.+..+||+.+++ ++..+.+.++-|...|++++..... +.-...|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~~----~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSPE----DRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCCC----CCCeEEEEECHhHHHHH
Confidence 44556666643 57999999999999 6789999999999999999775200 00113477777766443
No 287
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=94.38 E-value=0.061 Score=42.19 Aligned_cols=37 Identities=14% Similarity=0.344 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+++.|+.|||+.+++ ++..+.++|+.|...|++....
T Consensus 23 ~~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~ 59 (130)
T TIGR02944 23 SQPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKR 59 (130)
T ss_pred CCCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecC
Confidence 368999999999999 6899999999999999998653
No 288
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.38 E-value=0.23 Score=44.82 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=72.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecchHHHHhchh--------cCCCeEEEeccCCC-CCC------Cc--
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDLPHVVNGLES--------DLANLKYVGGDMFE-AIP------PA-- 256 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~-~~p------~~-- 256 (306)
.+...||-+|||-=.-+-.+- .| ++++.-+|+|++++.=++ ...++++++.|+++ .++ +|
T Consensus 91 ~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 346789999998554443332 34 477888888999986443 34489999999995 443 22
Q ss_pred ---cEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 257 ---DAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 257 ---D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
-++++--++.+++.++..++|..+...++| |+.++..
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~~~ 208 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVAFD 208 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEEEe
Confidence 478888899999999999999999999998 5555443
No 289
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.33 E-value=0.055 Score=40.71 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL 228 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 228 (306)
..+...+|||||.|.+.--|.+. +.++.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 35678999999999988777765 456889995
No 290
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.29 E-value=0.43 Score=41.72 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchh-----------cCCCeEEEeccCCCC------CCC-cc
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLES-----------DLANLKYVGGDMFEA------IPP-AD 257 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-----------~~~rv~~~~~d~~~~------~p~-~D 257 (306)
....||++|+|+|..+ .++......+++.-|.|.+++.-+. ....|....-+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG-~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVG-ILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHH-HHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4568999999999444 4444556788999999776665432 234666666555542 124 89
Q ss_pred EEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 258 AVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 258 ~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+++.+.++++-.. -..+++.++..|.. ++.+++.
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~ 198 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLA 198 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEE
Confidence 9999999976433 23556666666876 5644443
No 291
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=94.24 E-value=0.061 Score=35.76 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=38.8
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|++.|... +.+|+++||+.+|+ ++..++|=|..|...|++.+..
T Consensus 5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 45666654 79999999999999 7899999999999999999885
No 292
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.13 E-value=1 Score=42.14 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=64.2
Q ss_pred CCCeEEEecCCccHHHHH--------HHHH-------CCCCeEEEecchH-----HHHhchh--------------cCCC
Q 021867 196 GLNSLVDVGGGIGTVAKA--------IAKA-------FPNLECTDFDLPH-----VVNGLES--------------DLAN 241 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~--------l~~~-------~p~~~~~~~Dl~~-----~~~~a~~--------------~~~r 241 (306)
+..+|+|+|||+|..+.. +.++ -|..++..=|+|. +...... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 467899999999966533 2332 3567888888851 1111110 0112
Q ss_pred ---eEEEeccCCC-CCC--CccEEEehhhhccCCc--h----------------------------------HHHHHHHH
Q 021867 242 ---LKYVGGDMFE-AIP--PADAVLLKWILHDWND--E----------------------------------ECVKILKK 279 (306)
Q Consensus 242 ---v~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d--~----------------------------------~~~~iL~~ 279 (306)
+.-++|.|+. -+| ..++++.++.||..+. + +-..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3345578988 466 5899999999997652 0 12234555
Q ss_pred HHHhcCCCCCCcEEEEEeeecC
Q 021867 280 CKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 280 ~~~~L~p~~~gg~lli~e~~~~ 301 (306)
=++=|.| ||++++.=.-.+
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRT 241 (386)
T ss_pred HHHHhcc---CcEEEEEEecCC
Confidence 5567888 899998765554
No 293
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.04 E-value=0.07 Score=45.34 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=48.1
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
..|+..|... ++.|+.+||+.+|+ ++..+++.|+.|...|++++..... ..+.-...|.+|+.+..+.
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~--~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQ--GMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeeccc--CCCCCceEEEECcchhhhc
Confidence 3456666554 68999999999999 6899999999999999999763100 0000112378888776544
No 294
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=94.03 E-value=0.44 Score=37.91 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=46.9
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
++..|...+++.|..+||+.+++ ++..+.++++-|...|++++...... .-.-.+.+|+.++.+.
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~D----rR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCASD----RRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCCC----cCeeeeEEChHHHHHH
Confidence 45555543356899999999999 77999999999999999999863110 0012467888777544
No 295
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=94.02 E-value=0.08 Score=33.88 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=36.3
Q ss_pred ccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 41 PDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
++.|..+ ++.++.+|++.+++ ++..+++.|..|...|++.+..
T Consensus 6 l~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 6 LELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 3444443 67999999999999 7899999999999999999874
No 296
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.13 Score=48.88 Aligned_cols=66 Identities=23% Similarity=0.435 Sum_probs=51.7
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCC--C-CC---CccEEEe
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--A-IP---PADAVLL 261 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~-~p---~~D~~~~ 261 (306)
..+..+++|+=||.|.++..|+++. .+++++++ ++.++.|++ ..++++|..++..+ + +. .+|.+++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 3466799999999999999999553 47899998 888888876 56669999999876 2 21 3677765
No 297
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.00 E-value=0.15 Score=45.37 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=70.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCC-eEEEecc-hHHHHhchh---------cCCCeEEEeccCCC---CC--CCcc
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AI--PPAD 257 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~--p~~D 257 (306)
.++++.++-||||.|.+++..++. +.+ .+..+|. ..+++..++ ..++|.++.||-+. .. ..+|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 467899999999999999998876 666 4777787 445554444 57899999998765 23 3589
Q ss_pred EEEehhhhccCCchHH----HHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 258 AVLLKWILHDWNDEEC----VKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 258 ~~~~~~vlh~~~d~~~----~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+++.-.-=-.- +.+ .....-+.++|++ +|.+++..-.
T Consensus 198 Vii~dssdpvg--pa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDPVG--PACALFQKPYFGLVLDALKG---DGVVCTQGEC 238 (337)
T ss_pred EEEEecCCccc--hHHHHHHHHHHHHHHHhhCC---CcEEEEecce
Confidence 98874321111 112 2356667889998 8888887644
No 298
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=94.00 E-value=0.081 Score=36.52 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=37.7
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.++..|.+ ++.+..+||+.+|+ +...+++.++.|.+.|+.....
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~ 47 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV 47 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 446667775 68999999999999 7899999999999999966553
No 299
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.94 E-value=0.25 Score=44.18 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=56.3
Q ss_pred hHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCe-EEEecc-hHHHHhchh----cCCCeEEEeccCCC
Q 021867 182 ATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLES----DLANLKYVGGDMFE 251 (306)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~ 251 (306)
+..++++.+. .......||.-=|.|+++..+++++|... .+++|. |.+++.|++ ..+|++++..+|.+
T Consensus 11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 3455666665 45568999999999999999999999775 999999 999999988 36799999987754
No 300
>PRK11050 manganese transport regulator MntR; Provisional
Probab=93.93 E-value=0.089 Score=42.58 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=46.4
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
|..++.. +++.+..+||+.+++ ++..+.++++.|...|++.... ...+.+|+.+..+.
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~----------~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP----------YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec----------CCceEECchHHHHH
Confidence 4445544 368999999999999 7899999999999999998764 35678888776543
No 301
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=93.91 E-value=0.08 Score=34.65 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=33.9
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
|+..|..+++++|.++||+.+++ +.+.+++-+..|...|+.-+.
T Consensus 5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~~~I~~ 48 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWGIPIES 48 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEe
Confidence 45556434478999999999999 789999999999999943333
No 302
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.82 Score=41.86 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=72.9
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEec-cCCC-CCCC--ccEEEehh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGG-DMFE-AIPP--ADAVLLKW 263 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~-d~~~-~~p~--~D~~~~~~ 263 (306)
..+...|+|==||||.++++..-. ++++++.|+ ..++.-|+. ..+...+... |+.. |+++ +|.|..--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 345679999999999999988755 678999999 677777776 2345555555 8887 7774 88887643
Q ss_pred hhccCC-------chHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 264 ILHDWN-------DEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 264 vlh~~~-------d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
.----+ ++--.++|..+.+.|++ ||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 221111 33456789999999999 898888765
No 303
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=93.84 E-value=0.064 Score=45.80 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=47.0
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCC----CceecChhchhhh
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEE----QGYVLKNASKLLL 111 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~----~~y~~t~~s~~l~ 111 (306)
|...|.++ +|+|+.|||+++|+ ++..+++.|..|.+.|+++..... ++- -.|++|..+....
T Consensus 16 il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~~------~g~GRP~~~y~Lt~~g~~~f 81 (218)
T COG2345 16 ILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQQ------GGRGRPAKLYRLTEKGREQF 81 (218)
T ss_pred HHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeecc------CCCCCCceeeeecccchhhc
Confidence 44556554 79999999999999 679999999999999999976421 111 2488888776433
No 304
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.79 E-value=0.42 Score=39.89 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=66.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC--CC-C---CccEEEeh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--AI-P---PADAVLLK 262 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~~-p---~~D~~~~~ 262 (306)
...++||+=+|+|.++.+-+.++- .+++.+|. ..++...++ ...+++++..|... ++ + .||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 468999999999999999998864 37888888 555555554 35889999888874 11 1 39999997
Q ss_pred hhhcc-CCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 263 WILHD-WNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 263 ~vlh~-~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
=..+. .-+.+...++-.-...|+| +.++++|.-
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeC
Confidence 77761 2222222222224466888 556666654
No 305
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=93.71 E-value=0.085 Score=40.89 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 25 NFINSMSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 25 ~~~~~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+|-..+.+-+--.+.|++.|+.. +|.|..|+|+..|- +...+.|-|+.|+..|++..+.
T Consensus 54 Sye~la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 54 SYEDLARVLSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred cHHHHHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 34445555566678889999875 89999999999999 7899999999999999999886
No 306
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=93.69 E-value=0.26 Score=41.07 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=62.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchh----c----CCCeEEEeccCCCC-C----------CC
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLES----D----LANLKYVGGDMFEA-I----------PP 255 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~----~~rv~~~~~d~~~~-~----------p~ 255 (306)
++...||-+|||-=.....+...+++++++-+|+|++++.-++ . ..++++++.|+.++ + ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 4455899999999999999999888999999999999887554 1 23467899999862 1 11
Q ss_pred -ccEEEehhhhccCCchHHHHHHHHHH
Q 021867 256 -ADAVLLKWILHDWNDEECVKILKKCK 281 (306)
Q Consensus 256 -~D~~~~~~vlh~~~d~~~~~iL~~~~ 281 (306)
.-++++--++.+++.+++..+|+.+.
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 45778888899999999999988763
No 307
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=93.67 E-value=0.13 Score=34.13 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=35.7
Q ss_pred ccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 41 PDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+..|.. ++.|..+|++.+++ +...+.+.|+.|...|++....
T Consensus 3 l~~l~~--~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 3 LKLLAE--GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHhhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 344542 68999999999999 6789999999999999999764
No 308
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=93.65 E-value=0.29 Score=32.79 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.5
Q ss_pred CCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 51 MTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 51 ~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.|..+||+.+++ +...+++.|..|...|+++...
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 359999999999 6799999999999999998764
No 309
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=93.64 E-value=0.09 Score=44.91 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 27 INSMSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 27 ~~~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
-..+||...++..|+.+|.+. +|+.+.|||+++|+ ++..+..-+..|...|++.-..
T Consensus 15 dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 15 DVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTET 71 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeeee
Confidence 356788899999999999975 79999999999999 6889999999999999998654
No 310
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=93.64 E-value=0.1 Score=41.66 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=48.2
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
++.|+..|... +++|..+||+.+++ ++..+.++++-|...|++.+....+. .-.-.+.+|+.+..+.
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~~D----rR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPND----KRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCccc----CCeeEeEEChhHHHHH
Confidence 34456666543 68999999999999 78999999999999999998752110 0012356777776543
No 311
>PRK06474 hypothetical protein; Provisional
Probab=93.62 E-value=0.081 Score=44.01 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCcccccccCCCCCCHHHHHHhc-CCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 29 SMSLKCAVELGIPDIINKHGKPMTLNELVSAL-TINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 29 ~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..+|.-..++.|++.|...++++|+.+|++.+ ++ +...++|.|+.|...|++....
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~ 61 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVK 61 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 45667777888999887654459999999999 56 5688999999999999999875
No 312
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=93.55 E-value=0.13 Score=41.59 Aligned_cols=60 Identities=13% Similarity=0.277 Sum_probs=47.6
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhhcCCCCChHHHHHHh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLLKDNPLSVTPFLQAM 125 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~l~~~~~~~ 125 (306)
.++|+.+||+..++ ++..++++|..|...|+++-.. |-.|.|.++.....+ ++...+...
T Consensus 23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~r--------G~~GGy~La~~p~eI------tl~dIi~av 82 (153)
T PRK11920 23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVR--------GRNGGVRLGRPAADI------SLFDVVRVT 82 (153)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec--------CCCCCeeecCCHHHC------cHHHHHHHH
Confidence 57899999999999 6899999999999999999886 335788887755433 455555543
No 313
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.50 E-value=0.19 Score=44.97 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=69.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEeccCCCC------CCCccEEE
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA------IPPADAVL 260 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~------~p~~D~~~ 260 (306)
...++|||+=|=+|.++...+. ....+++.+|. ...++.+++ ..++++|+.+|+++. ...||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3467999999999999998765 33457999999 788888877 357899999999872 12599998
Q ss_pred ehhhh---ccCC-chHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 261 LKWIL---HDWN-DEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 261 ~~~vl---h~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
+-=.- ..+. ..+-.++++.+.+.++| ||.|+.+-
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s 238 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS 238 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence 73211 1122 12335789999999999 78877653
No 314
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=93.49 E-value=0.095 Score=44.53 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=45.5
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChh
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNA 106 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (306)
++.++..|.++ ++.+..+||+.+++ ++..++|.|+.|...|++++... ....|.+|+.
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~--------r~~~~~lT~~ 202 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR--------KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC--------CccEEEeCCC
Confidence 34556666654 57999999999999 67899999999999999998851 1356777764
No 315
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=93.46 E-value=0.2 Score=32.91 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCC-CHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPM-TLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..+ |..+||+.+|+ +...+++.++.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 456 89999999999 6899999999999999998764
No 316
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=93.44 E-value=0.13 Score=41.67 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
++++...+||+.+++ ++..+..+++-|...|+++... .+.+.+|+.+....
T Consensus 22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~----------y~gi~LT~~G~~~a 72 (154)
T COG1321 22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP----------YGGVTLTEKGREKA 72 (154)
T ss_pred cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec----------CCCeEEChhhHHHH
Confidence 489999999999999 6789999999999999999987 68899999887554
No 317
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=93.43 E-value=0.16 Score=40.50 Aligned_cols=62 Identities=11% Similarity=0.295 Sum_probs=47.4
Q ss_pred HHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChh
Q 021867 30 MSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNA 106 (306)
Q Consensus 30 ~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (306)
.||++.+.++.+ .. |.+.+..+||+.+|+ ++..++++|+.|...|+++... +-.|.|.++..
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~--------G~~GG~~l~~~ 70 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVR--------GKNGGIRLGKP 70 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEec--------CCCCCeeecCC
Confidence 456666665543 22 357899999999999 6899999999999999999886 22466777653
No 318
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=93.43 E-value=0.073 Score=36.46 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=32.2
Q ss_pred CCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 47 HGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 47 ~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+|-|-|+.|||+.+|+. ++..+.+.|+.|...|++++..
T Consensus 22 ~G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 22 NGYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp HSS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred cCCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 35677999999999995 5899999999999999999875
No 319
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=93.42 E-value=0.087 Score=40.28 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=40.0
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCC--CCCCcchHHHHHHHHHHcCceeeec
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTI--NPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~--~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.-|++.|...+.++|++||.+.+.- +..+...++|.|+.|+..|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 34567777665579999999999832 0116789999999999999999875
No 320
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=93.35 E-value=0.081 Score=38.69 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=46.1
Q ss_pred cccccccCCCCCCHHHHHHhc-CCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 40 IPDIINKHGKPMTLNELVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
|+..|.. ++....||.+.+ |+ ++..|.+-|+.|...|++++...... ...-.|++|+.++.|.
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~----p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEV----PPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSS----SSEEEEEE-HHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCC----CCCCccCCCcCHHHHH
Confidence 3344554 799999999999 88 67999999999999999998753100 0123599999988665
No 321
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=93.23 E-value=0.056 Score=45.57 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=57.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCC----C--CCccEEEehhhhcc
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA----I--PPADAVLLKWILHD 267 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~----~--p~~D~~~~~~vlh~ 267 (306)
+.+.++||+|.|.|.....++..+.. +...++ ..|..+.+ ....+.... + -.+|+|.+.++|-.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~-------kk~ynVl~~~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLK-------KKNYNVLTEIEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHh-------hcCCceeeehhhhhcCceeehHHHHHHHHh
Confidence 45789999999999999888766544 222233 23333332 222222221 1 14899999999965
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
.-++ -++|+.++.+|+|. .|++++
T Consensus 182 c~~p--~kLL~Di~~vl~ps--ngrviv 205 (288)
T KOG3987|consen 182 CFDP--FKLLEDIHLVLAPS--NGRVIV 205 (288)
T ss_pred hcCh--HHHHHHHHHHhccC--CCcEEE
Confidence 5554 68999999999984 677654
No 322
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.22 E-value=0.41 Score=43.04 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=42.9
Q ss_pred CCCeEEEecCCccHH-HHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEec----cCCCCC--C--CccE
Q 021867 196 GLNSLVDVGGGIGTV-AKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGG----DMFEAI--P--PADA 258 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~-~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~----d~~~~~--p--~~D~ 258 (306)
...++||||+|...+ ...-++.| +.++++.|+ +..++.|++ +.++|+++.. +++..+ + .+|+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 357899999997754 44445554 899999999 778888876 5789998754 455532 1 3899
Q ss_pred EEehhhhccCCch
Q 021867 259 VLLKWILHDWNDE 271 (306)
Q Consensus 259 ~~~~~vlh~~~d~ 271 (306)
.++.=.+|.=.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9998888864443
No 323
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=93.21 E-value=0.16 Score=42.19 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=39.8
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..|+++|..+ +++|.++||+.+|+ +...++++|..|...|++....
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence 3377888765 69999999999999 6799999999999999999543
No 324
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=93.18 E-value=0.13 Score=29.79 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=25.8
Q ss_pred CCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCce
Q 021867 50 PMTLNELVSALTINPSKTRCVYRLMRILIHSGFF 83 (306)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l 83 (306)
|+|-.|||+.+|+ ..+.++|+|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 679999999999998875
No 325
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=92.95 E-value=0.2 Score=36.79 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 53 LNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 53 ~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
+.+||+.+++ ++..+.+.++.|...|++.... ...|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~----------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP----------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC----------CCceEechhHHHHH
Confidence 5789999999 7799999999999999999986 35789998877543
No 326
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.89 E-value=0.32 Score=46.47 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=66.1
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-----hHHHHhchhcCCC-eEEEeccCCCCC---C-CccEEEehh
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-----PHVVNGLESDLAN-LKYVGGDMFEAI---P-PADAVLLKW 263 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~~~~~r-v~~~~~d~~~~~---p-~~D~~~~~~ 263 (306)
......|+|..+|.|+|+.+|.+. | +-++.. +..+...- +| +.=+-+|..+++ | .||++...+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIy---dRGLIG~yhDWCE~fsTYPRTYDLlHA~~ 435 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIY---DRGLIGVYHDWCEAFSTYPRTYDLLHADG 435 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhh---hcccchhccchhhccCCCCcchhheehhh
Confidence 345678999999999999999753 3 333332 33322221 22 222346776654 4 499999999
Q ss_pred hhccCCc-hHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 264 ILHDWND-EECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 264 vlh~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
++-.+.+ -+...||-++-|.|+| +|.++|-|.+
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP---~G~~iiRD~~ 469 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRP---GGWVIIRDTV 469 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCC---CceEEEeccH
Confidence 9987764 3346789999999999 8999997753
No 327
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=92.84 E-value=0.15 Score=44.83 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=57.0
Q ss_pred HHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhh
Q 021867 31 SLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLL 110 (306)
Q Consensus 31 ~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (306)
.+...-|.+|+-+|.+ ||.|.+||-..+++ ++..+..-++-|...|++.++ ++.|++|..++.+
T Consensus 9 if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~-----------~~~Y~LS~~G~ii 72 (260)
T COG4742 9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQE-----------GDRYSLSSLGKII 72 (260)
T ss_pred HHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEec-----------CCEEEecchHHHH
Confidence 4455567888888886 89999999999999 568899999999999999998 4999999999876
Q ss_pred hc
Q 021867 111 LK 112 (306)
Q Consensus 111 ~~ 112 (306)
+.
T Consensus 73 v~ 74 (260)
T COG4742 73 VE 74 (260)
T ss_pred HH
Confidence 63
No 328
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=92.78 E-value=0.16 Score=34.87 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=37.1
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..|+..+.. ++.+..+|++.+++ +...+.+.|+.|.+.|++....
T Consensus 10 ~~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~ 54 (78)
T cd00090 10 LRILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRR 54 (78)
T ss_pred HHHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEE
Confidence 344555555 34999999999999 6789999999999999999875
No 329
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.68 E-value=0.16 Score=47.04 Aligned_cols=49 Identities=20% Similarity=0.445 Sum_probs=38.0
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccC
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM 249 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~ 249 (306)
.|+|+=||.|.++..|++... +++++|. +++++.|++ ..++++|..++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 799999999999999998764 6888898 888888886 567899997654
No 330
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=92.58 E-value=0.23 Score=33.39 Aligned_cols=37 Identities=16% Similarity=0.400 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+++++..+||+.+|+ ++..+...++-|...|+++...
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 489999999999999 7899999999999999999875
No 331
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.46 E-value=1.6 Score=36.93 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=73.0
Q ss_pred HHHHHhhch-hhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-h----HHHHhchhcCCCeEEEeccCCCCCC--
Q 021867 183 TRVVIHKCK-DVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-P----HVVNGLESDLANLKYVGGDMFEAIP-- 254 (306)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~----~~~~~a~~~~~rv~~~~~d~~~~~p-- 254 (306)
+..++..++ -...+.++||=+|..+|....+++.--+.-.+.+++. | +.+..++ ..++|--.-+|...|+.
T Consensus 62 aAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~-~R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 62 AAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE-KRPNIIPILEDARKPEKYR 140 (231)
T ss_pred HHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH-hCCCceeeecccCCcHHhh
Confidence 344554443 1267889999999999999999999888666777776 3 3444455 46778888889888643
Q ss_pred ----CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 255 ----PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 255 ----~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
..|+++.--. ..+++.-+..|+..-|++ ||.++|
T Consensus 141 ~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~---~G~~~i 178 (231)
T COG1889 141 HLVEKVDVIYQDVA----QPNQAEILADNAEFFLKK---GGYVVI 178 (231)
T ss_pred hhcccccEEEEecC----CchHHHHHHHHHHHhccc---CCeEEE
Confidence 4788765321 134555667888888898 675554
No 332
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.28 E-value=0.97 Score=39.11 Aligned_cols=93 Identities=10% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHhhchhhhcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc--hHHHHhchhcCCCeEEEec-cCCCCCC-----Ccc
Q 021867 186 VIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL--PHVVNGLESDLANLKYVGG-DMFEAIP-----PAD 257 (306)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~~~~rv~~~~~-d~~~~~p-----~~D 257 (306)
.++.|. .......+||||..+|.|+..++++.. .++.++|. .+.....+ ..+||..+.. |+..-.| ..|
T Consensus 70 ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR-~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 70 ALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLR-NDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHhcC-cCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHh-cCCcEEEEecCChhhCCHHHcccCCC
Confidence 445555 235678999999999999999998743 36888887 33333333 5677777665 6554211 256
Q ss_pred EEEehhhhccCCchHHHHHHHHHHHhcCC
Q 021867 258 AVLLKWILHDWNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 258 ~~~~~~vlh~~~d~~~~~iL~~~~~~L~p 286 (306)
++++--.+ .+ ...+|-.+...+++
T Consensus 147 ~~v~DvSF--IS---L~~iLp~l~~l~~~ 170 (245)
T COG1189 147 LIVIDVSF--IS---LKLILPALLLLLKD 170 (245)
T ss_pred eEEEEeeh--hh---HHHHHHHHHHhcCC
Confidence 66553322 12 35678888888887
No 333
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=92.24 E-value=0.25 Score=37.47 Aligned_cols=53 Identities=13% Similarity=0.406 Sum_probs=42.2
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCC---ceecChhchhhh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLKNASKLLL 111 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (306)
++.|..+||+.+++ ++..+.++++.|...|++.+... ..+. .+.+|+.+..+.
T Consensus 42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~-------~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERS-------EDDERKVIISINKEQRSKI 97 (109)
T ss_pred CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCC-------cccCCeEEEEECHHHHHHH
Confidence 68999999999999 78999999999999999998763 1122 256777766443
No 334
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=92.23 E-value=0.14 Score=38.62 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
.+..|+.+|..+ ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 355677777764 68999999999999 789999999999999999954
No 335
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=92.09 E-value=0.32 Score=35.92 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=38.3
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecC
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLK 104 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t 104 (306)
.++|..|||+.+|+ +...+.|.|..|...|++.... +.+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~---------~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQG---------MMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeec---------CCceeecC
Confidence 68999999999999 6789999999999999999774 24677765
No 336
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.05 E-value=2.2 Score=39.52 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=69.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCC--CeEEEecc-hHHHHh----chh-cCCCeEEEeccCCC---CCC--C-ccEE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPN--LECTDFDL-PHVVNG----LES-DLANLKYVGGDMFE---AIP--P-ADAV 259 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~----a~~-~~~rv~~~~~d~~~---~~p--~-~D~~ 259 (306)
.....+|||.-++.|.=+.++++..++ ..++.+|. +.-++. .++ ...++.....|... ..+ + ||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456699999999999999999999887 45689998 333333 333 45557777777653 122 2 7888
Q ss_pred Eehh-------------hhccCCchH-------HHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 260 LLKW-------------ILHDWNDEE-------CVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 260 ~~~~-------------vlh~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
++-- +...|+.++ ..+||.++.+.++| ||+|+-..-
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTC 289 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTC 289 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcc
Confidence 7632 223344332 25689999999999 777765543
No 337
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=91.49 E-value=0.29 Score=35.75 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=49.5
Q ss_pred HHHHhCcccccccC-CCCCCHHHHHHhcCCCCCCcchHHHHHH----------HHHHcCce-eeecccCCCCCCCCCCce
Q 021867 34 CAVELGIPDIINKH-GKPMTLNELVSALTINPSKTRCVYRLMR----------ILIHSGFF-AQQTLNSSRNNNDEEQGY 101 (306)
Q Consensus 34 ~a~~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr----------~L~~~g~l-~~~~~~~~~~~~~~~~~y 101 (306)
.=++..|+..|... +.+.++.|||..+++ ++..+.--|+ .|+.+|++ .+... .+...|
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~-------~g~k~Y 77 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK-------GGFKYY 77 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec-------CCeeEE
Confidence 44577788888765 589999999999999 6676666665 58999999 33331 234579
Q ss_pred ecChhchhhh
Q 021867 102 VLKNASKLLL 111 (306)
Q Consensus 102 ~~t~~s~~l~ 111 (306)
++|+.+..++
T Consensus 78 ~lT~~G~~~~ 87 (90)
T PF07381_consen 78 RLTEKGKRIA 87 (90)
T ss_pred EeChhhhhHH
Confidence 9999876543
No 338
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.33 E-value=1.7 Score=41.52 Aligned_cols=100 Identities=21% Similarity=0.354 Sum_probs=72.1
Q ss_pred eEEEecCCccHHHHHHHHH-CCCCeEEEecch-HHHHhchh----cCCCeEEEeccCCC-CCC--CccEEEehhhhccC-
Q 021867 199 SLVDVGGGIGTVAKAIAKA-FPNLECTDFDLP-HVVNGLES----DLANLKYVGGDMFE-AIP--PADAVLLKWILHDW- 268 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl~-~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~- 268 (306)
+++-+|||.-.+...+-+. |+ .++.+|.. .+++.... ..+-+.+...|+.. .++ +||+++....++.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999888777553 33 36667874 44443332 45668889999988 555 69999999999874
Q ss_pred CchHH-------HHHHHHHHHhcCCCCCCcEEEEEeee--cCCC
Q 021867 269 NDEEC-------VKILKKCKEAVTSDDKKGKVIIIDMI--RENK 303 (306)
Q Consensus 269 ~d~~~-------~~iL~~~~~~L~p~~~gg~lli~e~~--~~~~ 303 (306)
.|+.+ -..+.++.+.+++ ||+.+.+-.+ .|-.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQG 169 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCC
Confidence 34332 2358899999999 8999888874 4443
No 339
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=90.85 E-value=0.34 Score=37.38 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=43.4
Q ss_pred HHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 34 CAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..+...|.+++..+ |.+|..+++..+|+ +-..+.++++.|++.|-|...+
T Consensus 11 ~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 11 EELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 44566777888876 79999999999999 6789999999999999999874
No 340
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.65 E-value=0.11 Score=41.70 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=41.2
Q ss_pred eEEEeccCCC-CCC--CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 242 LKYVGGDMFE-AIP--PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 242 v~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
|.+++--.++ ++. ++|+|+..+|+-+++-++-...++.|++.||| ||+|-|.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEE
Confidence 4444443333 443 59999999999999988899999999999999 8988775
No 341
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=90.50 E-value=0.54 Score=33.23 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec-ccCCCCCCCCCCceecChhch
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT-LNSSRNNNDEEQGYVLKNASK 108 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~-~~~~~~~~~~~~~y~~t~~s~ 108 (306)
+.|+...+||+.+++ ++..++-.|..|.++|+++... . .+.|..|..+-
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~---------s~GriPT~~aY 70 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP---------SGGRIPTDKAY 70 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC---------CCCCCcCHHHH
Confidence 589999999999999 6789999999999999998532 2 36677776553
No 342
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=90.48 E-value=0.3 Score=39.80 Aligned_cols=46 Identities=17% Similarity=0.074 Sum_probs=39.0
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..|+++|..+ +.+|-++||+.+|+ +...++++|..|...|++....
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 3467777654 68999999999999 7899999999999999997543
No 343
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.41 E-value=0.72 Score=38.22 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=48.1
Q ss_pred hCcccccccC-CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 38 LGIPDIINKH-GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 38 lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
+.++-.|... +++.|..+||+.+++ +...+.++++-|...|++++....+. .-.-.+.+|+.++.+.
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~D----rR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDND----RRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCC----CCeeEEEECHHHHHHH
Confidence 3345555432 367999999999999 77999999999999999999763110 0012467888887554
No 344
>PRK10742 putative methyltransferase; Provisional
Probab=90.33 E-value=0.84 Score=39.90 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=68.4
Q ss_pred HHHHhhchhhhcCCC--eEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------------cCCCeEEEe
Q 021867 184 RVVIHKCKDVFEGLN--SLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------------DLANLKYVG 246 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~~rv~~~~ 246 (306)
+.+++... +.+.. +|||.=+|.|..+..++.+ +++++.+|. |.+....+. ...|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 34455554 44444 8999999999999999988 667999998 433333222 126799999
Q ss_pred ccCCC---CCC-CccEEEeh----------------hhhccC--CchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 247 GDMFE---AIP-PADAVLLK----------------WILHDW--NDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 247 ~d~~~---~~p-~~D~~~~~----------------~vlh~~--~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+|..+ ..+ .||+|++- +++|.+ .|++...+|+.+.++-+ -+++|=+..
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~-----kRVVVKrp~ 221 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT-----KRVVVKRPD 221 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC-----ceEEEecCC
Confidence 98765 223 58988863 222221 23444567777776665 377765543
No 345
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=90.19 E-value=2.3 Score=38.34 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=64.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc----------------------hHHHHh---------chh--------
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL----------------------PHVVNG---------LES-------- 237 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl----------------------~~~~~~---------a~~-------- 237 (306)
..+||-=|||.|.++..|+..++.+++-=+-. |.+-.. .+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 56899999999999999999988877521100 111000 000
Q ss_pred -----cCCCeEEEeccCCC--CCC----CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 238 -----DLANLKYVGGDMFE--AIP----PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 238 -----~~~rv~~~~~d~~~--~~p----~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
..+..+.-+|||.+ +.+ .+|+|+.++.+ | +......-|..+...|+| ||..+=+-+.
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-D-Ta~NileYi~tI~~iLk~---GGvWiNlGPL 298 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-D-TAHNILEYIDTIYKILKP---GGVWINLGPL 298 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-e-chHHHHHHHHHHHHhccC---CcEEEeccce
Confidence 12345557799987 333 38999888655 2 223457789999999999 7776655444
No 346
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.11 E-value=2.7 Score=38.62 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=60.6
Q ss_pred hcCCCeEEEecCCccHHHHHHHH--------HC--------CCCeEEEecch-----HHHHhchh------cCCC--eEE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAK--------AF--------PNLECTDFDLP-----HVVNGLES------DLAN--LKY 244 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~--------~~--------p~~~~~~~Dl~-----~~~~~a~~------~~~r--v~~ 244 (306)
.++.-+|+|+||.+|..+..+.. ++ |.++++.-|+| .+...... .... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 46678999999999987755433 22 34577888885 12211111 1223 345
Q ss_pred EeccCCC-CCC--CccEEEehhhhccCCc-------------------------------------hHHHHHHHHHHHhc
Q 021867 245 VGGDMFE-AIP--PADAVLLKWILHDWND-------------------------------------EECVKILKKCKEAV 284 (306)
Q Consensus 245 ~~~d~~~-~~p--~~D~~~~~~vlh~~~d-------------------------------------~~~~~iL~~~~~~L 284 (306)
+++.|+. -+| ..|+++.++.||..+. .+...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6789998 356 5899999999996542 11133455555668
Q ss_pred CCCCCCcEEEEEeeecCC
Q 021867 285 TSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 285 ~p~~~gg~lli~e~~~~~ 302 (306)
+| ||++++.=...++
T Consensus 174 v~---GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDE 188 (334)
T ss_dssp EE---EEEEEEEEEE-ST
T ss_pred cc---CcEEEEEEeeccc
Confidence 88 8999988776666
No 347
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.77 E-value=0.23 Score=37.57 Aligned_cols=39 Identities=21% Similarity=0.506 Sum_probs=29.7
Q ss_pred ccEEEehhhh---c-cCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 256 ADAVLLKWIL---H-DWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 256 ~D~~~~~~vl---h-~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
||+|++..|. | +|.|+-...+++++++.|+| |.++|+|+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEp 44 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEP 44 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE-
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeC
Confidence 7888887665 3 57899999999999999999 45555554
No 348
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.71 E-value=0.78 Score=43.12 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=64.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC-CC-CC--ccEEEehh
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AI-PP--ADAVLLKW 263 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~-p~--~D~~~~~~ 263 (306)
.+...+||||.|+|.++...+++..+ .++.++. -+|.+.|++ .+++|+++.---.+ .+ |. +|+++.--
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 35568999999999999999988755 5888887 778888887 67888887654443 22 23 77776655
Q ss_pred hhccCCchHHHHHHHHHHHhcCC
Q 021867 264 ILHDWNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 264 vlh~~~d~~~~~iL~~~~~~L~p 286 (306)
+.-.+--+-+..-++.+.+.|-.
T Consensus 144 fdtEligeGalps~qhAh~~L~~ 166 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLLV 166 (636)
T ss_pred hhhhhhccccchhHHHHHHHhcc
Confidence 55544445455667777777643
No 349
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=89.64 E-value=0.51 Score=33.33 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=37.5
Q ss_pred cccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 42 DIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|+|..+ +-.++.+||..+++ ++..++.+|..|+++|-+++..
T Consensus 9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 566654 78999999999999 6899999999999999999885
No 350
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=89.61 E-value=0.83 Score=39.18 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=43.5
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
..+|..+||+.+++ ++..+.|+|+.|...|++++... .....+.+|+.+..+.
T Consensus 20 ~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~-------~r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIV-------PRGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEc-------CCceEEEECHHHHHHH
Confidence 56999999999999 78999999999999999998752 1135688888776443
No 351
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=89.27 E-value=0.33 Score=34.14 Aligned_cols=49 Identities=18% Similarity=0.370 Sum_probs=41.2
Q ss_pred HHhCcccccccCC-CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 36 VELGIPDIINKHG-KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 36 ~~lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.+..+++.|+++. .+.+..+|++.+|. |++.+...++.|...|++.+..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 3455666676543 78999999999999 8899999999999999999885
No 352
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.27 E-value=5.8 Score=34.54 Aligned_cols=87 Identities=15% Similarity=0.094 Sum_probs=49.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEeccCCCCCC-----CccEEEehhhh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-----PADAVLLKWIL 265 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-----~~D~~~~~~vl 265 (306)
..++||=||=.-- .+.+++-..+..+++++|+ ..+++..++ ..-.|+.+.+|+..|+| .||+++.-=.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 4688999995544 4455555666779999999 455554433 33339999999999877 3899887432
Q ss_pred ccCCchHHHHHHHHHHHhcCC
Q 021867 266 HDWNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p 286 (306)
|+.+-..-++.+..++|+.
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S
T ss_pred --CCHHHHHHHHHHHHHHhCC
Confidence 4556667789999999997
No 353
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=89.11 E-value=0.22 Score=36.63 Aligned_cols=61 Identities=15% Similarity=0.301 Sum_probs=46.1
Q ss_pred ccccc-cCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 41 PDIIN-KHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 41 fd~L~-~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
||+|. .++++....-|.-.+++ +-...+.+++.|+..|++...+. +....|.+|+.+..+.
T Consensus 21 ~dIL~~~~~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~-------~~~~~y~lT~KG~~fl 82 (95)
T COG3432 21 FDILKAISEGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN-------GRRKVYELTEKGKRFL 82 (95)
T ss_pred HHHHHHhcCCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC-------CccceEEEChhHHHHH
Confidence 34444 23478999999999999 78999999999999997666651 1123799999998553
No 354
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=88.91 E-value=0.69 Score=44.29 Aligned_cols=54 Identities=24% Similarity=0.461 Sum_probs=44.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEeccC
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM 249 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~ 249 (306)
++..+.++|+=||+|.++..+++.. .+++++++ |+.++.|+. ..++.+|++|-.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 4556899999999999999998865 46888888 888888876 678899999833
No 355
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=88.90 E-value=0.83 Score=31.77 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=40.1
Q ss_pred HHHHHHHhCccc-----ccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 31 SLKCAVELGIPD-----IINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 31 ~l~~a~~lglfd-----~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.+..+-+.|..+ .+. -++|-++||+.+|+ +...+.|+|+.|...|+++...
T Consensus 7 Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~ 62 (76)
T PF13545_consen 7 LLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR 62 (76)
T ss_dssp HHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 344555555541 232 58999999999999 6789999999999999999774
No 356
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=88.68 E-value=1.2 Score=30.01 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=37.5
Q ss_pred HHHHHHHhCcccccccCCCCC-CHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 31 SLKCAVELGIPDIINKHGKPM-TLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 31 ~l~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.|...+..|-+ .. |..+ |..+||+.+|+ +...+++.|+.|.+.|+++...
T Consensus 8 ~l~~~I~~g~~---~~-g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 8 QLRQAILSGRL---PP-GDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp HHHHHHHTTSS----T-TSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHcCCC---CC-CCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 34444444444 22 4678 99999999999 6789999999999999999885
No 357
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=2.7 Score=37.85 Aligned_cols=107 Identities=17% Similarity=0.300 Sum_probs=81.0
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC--CCCeEEEecchHHHHhchh---------------------------cCCCeEE
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF--PNLECTDFDLPHVVNGLES---------------------------DLANLKY 244 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl~~~~~~a~~---------------------------~~~rv~~ 244 (306)
..+...||-+|||.=.....|...+ +.++++-+|.|++++.=-. ..++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999988 7888999999887764110 2344555
Q ss_pred EeccCCC--CC-----C-----C-ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCCC
Q 021867 245 VGGDMFE--AI-----P-----P-ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRENKK 304 (306)
Q Consensus 245 ~~~d~~~--~~-----p-----~-~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (306)
...|..+ .+ + + +-+++.--+|.+.+.+++..+++-+...++. +.+++.|.+.+.++
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~ 233 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDR 233 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCCh
Confidence 5566653 11 0 1 3466667788889999999999999999985 89999999987664
No 358
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.57 E-value=3.1 Score=40.19 Aligned_cols=119 Identities=18% Similarity=0.314 Sum_probs=75.0
Q ss_pred ccccccCCchHHHHHHHHHHhchhhhHHHHHhhchhh-hcCCCeEEEecCCccHHHHHHHHH----CCCCeEEEecc-hH
Q 021867 157 FWVYAGDEPKINNFFNEAMASDARLATRVVIHKCKDV-FEGLNSLVDVGGGIGTVAKAIAKA----FPNLECTDFDL-PH 230 (306)
Q Consensus 157 ~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~ 230 (306)
-|+.++++|-....|.++. ...+.+..+.. .+....|.-+|+|.|-+.....+. .-.++.+.++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 3566667776666555544 23344443321 223567888999999887665543 33456777776 65
Q ss_pred HHHhchh-----cCCCeEEEeccCCC-CCC--CccEEEehhhhccCCc----hHHHHHHHHHHHhcCC
Q 021867 231 VVNGLES-----DLANLKYVGGDMFE-AIP--PADAVLLKWILHDWND----EECVKILKKCKEAVTS 286 (306)
Q Consensus 231 ~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~~~~~~vlh~~~d----~~~~~iL~~~~~~L~p 286 (306)
++...+. -..||+++..||.+ .-| .+|+++ +..|--+.| ++| |..+-+.|+|
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPEC---LDG~q~fLkp 470 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SELLGSFGDNELSPEC---LDGAQKFLKP 470 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HHhhccccCccCCHHH---HHHHHhhcCC
Confidence 5544333 57899999999998 444 377754 445544544 345 7777777998
No 359
>PHA02943 hypothetical protein; Provisional
Probab=88.52 E-value=0.67 Score=37.01 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=38.4
Q ss_pred CcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 39 GIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.+++.|. .|..|..|||+++|+ +-..++-+|..|...|.+.+..
T Consensus 15 eILE~Lk--~G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLA--DGCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHh--cCCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 4566673 378999999999999 6789999999999999999986
No 360
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=88.47 E-value=0.35 Score=42.62 Aligned_cols=48 Identities=29% Similarity=0.416 Sum_probs=42.2
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecc
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
..+.++|.++||-.+-+||.+++|. +...+.|+|+-|..+|++++.+.
T Consensus 198 ~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 198 KEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence 4466777777888999999999999 67899999999999999999874
No 361
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=88.47 E-value=0.39 Score=41.34 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=48.6
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhhcCCCCChHHHHH
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLLKDNPLSVTPFLQ 123 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~l~~~~~ 123 (306)
+-+...|||+.+|+ -+..+...++-|+..|++++.. .+.|..|..+.....+.-..++.+..
T Consensus 24 p~v~q~eIA~~lgi---T~QaVsehiK~Lv~eG~i~~~g----------R~~Y~iTkkG~e~l~~~~~dlr~f~~ 85 (260)
T COG1497 24 PRVKQKEIAKKLGI---TLQAVSEHIKELVKEGLIEKEG----------RGEYEITKKGAEWLLEQLSDLRRFSE 85 (260)
T ss_pred CCCCHHHHHHHcCC---CHHHHHHHHHHHHhccceeecC----------CeeEEEehhHHHHHHHHHHHHHHHHH
Confidence 67899999999999 5799999999999999999975 57899999887444332223444443
No 362
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=88.46 E-value=1.9 Score=38.57 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=67.6
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEeccCCCC----CC-CccEEEe
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP-PADAVLL 261 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p-~~D~~~~ 261 (306)
.....+|||+-++.|.=+..+++..+ ..+++..|+ +.-+...++ ....+.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34567899999999999999999988 558899998 443443332 567788887777652 22 3788876
Q ss_pred hh------hhccCC-------chH-------HHHHHHHHHHhc----CCCCCCcEEEEE
Q 021867 262 KW------ILHDWN-------DEE-------CVKILKKCKEAV----TSDDKKGKVIII 296 (306)
Q Consensus 262 ~~------vlh~~~-------d~~-------~~~iL~~~~~~L----~p~~~gg~lli~ 296 (306)
-- ++..-+ .++ -.++|+++.+.+ +| ||+++-.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYs 218 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYS 218 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEE
Confidence 21 121111 111 257899999999 99 7777654
No 363
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.29 E-value=1.4 Score=41.26 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=53.4
Q ss_pred hhcCCCeEEEeccCCC---CCC--CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 236 ESDLANLKYVGGDMFE---AIP--PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 236 ~~~~~rv~~~~~d~~~---~~p--~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
++..+||+++.+++.+ ..| .+|.++++.++-.+++++...+++++.++++| ||+|+.-....+.
T Consensus 271 r~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 271 RARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred hcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 3356999999998876 343 59999999999888899999999999999999 9999987665443
No 364
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=88.05 E-value=0.84 Score=37.67 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=40.4
Q ss_pred CCHHHHHHhc--CCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchh
Q 021867 51 MTLNELVSAL--TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKL 109 (306)
Q Consensus 51 ~t~~eLA~~~--g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (306)
-++.+||+++ ++ +..-++.-|+.|..+|++++.+ +|.|..|..+-.
T Consensus 40 ~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~----------~g~y~~t~~~l~ 87 (171)
T PF14394_consen 40 PDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG----------DGKYVQTDKSLT 87 (171)
T ss_pred CCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC----------CCcEEEecceee
Confidence 3899999999 88 6899999999999999999997 589999886533
No 365
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=87.72 E-value=0.61 Score=38.12 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=42.8
Q ss_pred HHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 34 CAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
...+..|+.+|.++ +..|..+||+++|+ ++..+.+=++-|...|++...
T Consensus 13 D~~D~~IL~~Lq~d-~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 13 DRIDRNILNELQKD-GRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHHhccC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 34577888999875 79999999999999 689999999999999999854
No 366
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=87.67 E-value=0.39 Score=33.80 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHH
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRIL 77 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L 77 (306)
++..|+. |.|+|+++||.++|. ..+.+...|..+
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~ 62 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAM 62 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH-
T ss_pred HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhC
Confidence 6778887 799999999999999 444555544444
No 367
>PHA01634 hypothetical protein
Probab=87.38 E-value=3.4 Score=32.32 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=30.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES 237 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 237 (306)
..++|+|||++.|..++.++-+... +++.++. |...+..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHHHH
Confidence 4689999999999999999876432 5777776 555555443
No 368
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=87.23 E-value=0.59 Score=45.33 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=51.8
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhhcC
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLLKD 113 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (306)
+..|+..|... ++.|..+||+.+++ ++..+.++++.|.+.|+++.... ....|.+|+.++.+...
T Consensus 8 e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~--------~~~~i~LTeeG~~~~~~ 72 (489)
T PRK04172 8 EKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEER--------VEEVYVLTEEGKKYAEE 72 (489)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEee--------eEEEEEECHHHHHHHHh
Confidence 44556666653 68999999999999 78999999999999999998752 13569999999855543
No 369
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=87.14 E-value=1 Score=38.53 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHH
Q 021867 27 INSMSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRI 76 (306)
Q Consensus 27 ~~~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~ 76 (306)
....+|+.|.++|-||. + ...+..|||+.+|+ ++..+..+||-
T Consensus 159 rQ~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGI---Skst~~ehLRr 201 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGI---SKSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCC---CHHHHHHHHHH
Confidence 35679999999999997 3 47999999999999 45555555554
No 370
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=87.10 E-value=1.6 Score=35.19 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhCc-------ccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCC
Q 021867 23 IFNFINSMSLKCAVELGI-------PDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNN 95 (306)
Q Consensus 23 ~~~~~~~~~l~~a~~lgl-------fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~ 95 (306)
+++-|...|+.+|.+.++ +-.+...+.|.++.+|+..++.. |...+..-||-|...|+++....
T Consensus 64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~------- 134 (199)
T COG5631 64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGS------- 134 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCC-------
Confidence 556777788888876553 22333336899999999999996 77889999999999999998862
Q ss_pred CCCCceecChhchh
Q 021867 96 DEEQGYVLKNASKL 109 (306)
Q Consensus 96 ~~~~~y~~t~~s~~ 109 (306)
+-+-+|..|+.+..
T Consensus 135 gkevTy~vTa~G~~ 148 (199)
T COG5631 135 GKEVTYEVTALGHR 148 (199)
T ss_pred CceEEEEEecchHH
Confidence 22356888887753
No 371
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=87.01 E-value=0.64 Score=37.54 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=41.5
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
.+..|+++|..+ +..|..+||+++|+ ++..+.+=++-|...|++...
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 467788888874 79999999999999 689999999999999999854
No 372
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.99 E-value=4.3 Score=39.48 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=61.7
Q ss_pred CCCeEEEecCC-ccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCC-eEEEe---------------ccC-------C
Q 021867 196 GLNSLVDVGGG-IGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLAN-LKYVG---------------GDM-------F 250 (306)
Q Consensus 196 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~r-v~~~~---------------~d~-------~ 250 (306)
.+.+|+=+|+| .|..+...++... .+++++|. ++..+.+++.... +.+-. .++ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 47899999999 5667777887775 48999998 7888888763322 22211 111 0
Q ss_pred CC-CCCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 251 EA-IPPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 251 ~~-~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
.+ ..++|+++-.--...-+.+ ..+.+...+.|+| ||+++.+-
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkp---GgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKP---GSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCC---CCEEEEEc
Confidence 11 1358988776543221122 2335999999999 89877764
No 373
>PF13730 HTH_36: Helix-turn-helix domain
Probab=86.87 E-value=0.86 Score=29.61 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=27.2
Q ss_pred CHHHHHHhcCCCCCCcchHHHHHHHHHHcCce
Q 021867 52 TLNELVSALTINPSKTRCVYRLMRILIHSGFF 83 (306)
Q Consensus 52 t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l 83 (306)
|.+.||+.+|+ +.+.+.+.++.|...|++
T Consensus 27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 89999999999 689999999999999985
No 374
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=86.77 E-value=1 Score=42.67 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChh
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNA 106 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (306)
+.|.|.++|++.+++ +++.++++|+.|...|++.+.+ ++.|.+.+.
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~----------~g~~~l~rd 353 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE----------RGQWVLARD 353 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC----------CCceEecCC
Confidence 479999999999999 6899999999999999999764 466776653
No 375
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=86.54 E-value=3.5 Score=31.84 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCCCHHHHHHhcC-CCCCCcchHHHHHHHHHHcCceeeecccCCCC
Q 021867 15 AQAHVWNHIFNFINSMSLKCAVELGIPDIINKHGKPMTLNELVSALT-INPSKTRCVYRLMRILIHSGFFAQQTLNSSRN 93 (306)
Q Consensus 15 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g-~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~ 93 (306)
+....++++.+-|...+|+... . ++....||-..++ + ++.-|.+-|+.|...|++.+..-..
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~---------~--g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~--- 74 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLF---------D--GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPE--- 74 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHh---------c--CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCC---
Confidence 4566777777777777766542 2 6899999999998 8 6899999999999999999875210
Q ss_pred CCCCCCceecChhchhhh
Q 021867 94 NNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 94 ~~~~~~~y~~t~~s~~l~ 111 (306)
..-.-.|++|+.++.|.
T Consensus 75 -~PprveY~LT~~G~~L~ 91 (120)
T COG1733 75 -EPPRVEYRLTEKGRDLL 91 (120)
T ss_pred -CCceeEEEEhhhHHHHH
Confidence 00123588888877554
No 376
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=86.30 E-value=0.95 Score=39.72 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLL 110 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (306)
|+.|+.|||+.+|+ +...++.+|+.|...|++...+ |.+..|+.-+-...+
T Consensus 29 g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~--------g~P~~y~av~p~~~i 79 (247)
T COG1378 29 GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIE--------GRPKKYRAVPPEELI 79 (247)
T ss_pred CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeC--------CCCceEEeCCHHHHH
Confidence 79999999999999 6789999999999999999875 346778877655433
No 377
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=86.21 E-value=3.2 Score=38.78 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=65.4
Q ss_pred HHHHhhchhhhcCCCeEEEecCCccH----HHHHHHHHC---CCCeEEEecchH-----HHHhchh--------cCCCeE
Q 021867 184 RVVIHKCKDVFEGLNSLVDVGGGIGT----VAKAIAKAF---PNLECTDFDLPH-----VVNGLES--------DLANLK 243 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~----~~~~l~~~~---p~~~~~~~Dl~~-----~~~~a~~--------~~~rv~ 243 (306)
+.|++.+. -.+..+|+|+|-|.|. +...|+.+. |.+++++++.|. .++.+.+ ..=..+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 45667666 5577899999999994 445555553 677899998832 2222222 222244
Q ss_pred EEec--cCCCCC--------C-CccEEEehhhhccCCch------HHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 244 YVGG--DMFEAI--------P-PADAVLLKWILHDWNDE------ECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 244 ~~~~--d~~~~~--------p-~~D~~~~~~vlh~~~d~------~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
|..- +-.+.. + ++=+|-+..-||+..++ ....+|+.++ .|+| -.++++|.-.+
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~ 247 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEAD 247 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCC
Confidence 4441 212211 1 35566677778887632 2334666664 7898 57777776543
No 378
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=86.15 E-value=3.9 Score=34.99 Aligned_cols=100 Identities=15% Similarity=0.229 Sum_probs=62.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCC--eEEEecc-hHHHHhchh----------------------------------
Q 021867 195 EGLNSLVDVGGGIGTVAKAIAKAFPNL--ECTDFDL-PHVVNGLES---------------------------------- 237 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~Dl-~~~~~~a~~---------------------------------- 237 (306)
.++.++-|==||+|+++..+.-.+++. .+++-|+ +.+++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 578899999999999998887777664 5788888 777777654
Q ss_pred -------------cCCCeEEEeccCCCCCC--------CccEEEehhhh---ccCCc----hHHHHHHHHHHHhcCCCCC
Q 021867 238 -------------DLANLKYVGGDMFEAIP--------PADAVLLKWIL---HDWND----EECVKILKKCKEAVTSDDK 289 (306)
Q Consensus 238 -------------~~~rv~~~~~d~~~~~p--------~~D~~~~~~vl---h~~~d----~~~~~iL~~~~~~L~p~~~ 289 (306)
...-......|+|+|.+ ..|+|+.--.- .+|.- +-..++|..++.+|++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 02225677789998532 36888875443 34643 4467899999999965
Q ss_pred CcEEEEEe
Q 021867 290 KGKVIIID 297 (306)
Q Consensus 290 gg~lli~e 297 (306)
++.+.|.+
T Consensus 207 ~sVV~v~~ 214 (246)
T PF11599_consen 207 RSVVAVSD 214 (246)
T ss_dssp T-EEEEEE
T ss_pred CcEEEEec
Confidence 56666644
No 379
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=86.06 E-value=0.64 Score=32.34 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=32.8
Q ss_pred CCCCHHHHHHhc---CCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPMTLNELVSAL---TINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~t~~eLA~~~---g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.++..++|+.+ +... ..++++.++.+|.+.|++++..
T Consensus 23 ~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 789999999999 7711 2489999999999999999965
No 380
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.03 E-value=4.9 Score=37.46 Aligned_cols=100 Identities=23% Similarity=0.227 Sum_probs=62.5
Q ss_pred hcCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEecc-hHHHHhchhc-CCC-eEEEecc-CCCC---C-C--CccEEEeh
Q 021867 194 FEGLNSLVDVGGGI-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESD-LAN-LKYVGGD-MFEA---I-P--PADAVLLK 262 (306)
Q Consensus 194 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~~r-v~~~~~d-~~~~---~-p--~~D~~~~~ 262 (306)
.....+|+.+|+|. |..+..+++.....+++++|. ++..+.+++. ... +.+...+ +.+. . + ++|+++=.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 44567899999987 889999999986546888876 6666666642 111 1111121 2111 1 1 36777553
Q ss_pred ---------------hhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEee
Q 021867 263 ---------------WILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDM 298 (306)
Q Consensus 263 ---------------~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~ 298 (306)
++|+..+++ ...++.+.+.|++ +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 123333343 3468888999999 899998753
No 381
>PRK05638 threonine synthase; Validated
Probab=85.68 E-value=1 Score=43.10 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=40.8
Q ss_pred CCCCHHHHHHhcC--CCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhh
Q 021867 49 KPMTLNELVSALT--INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLL 110 (306)
Q Consensus 49 ~~~t~~eLA~~~g--~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (306)
+++++.||++.++ + ++..++++|+.|...|+++..... +-.-.|++|+.+..+
T Consensus 383 ~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~~------g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 383 REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYRK------GRRVYYKLTEKGRRL 437 (442)
T ss_pred CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeecC------CCcEEEEECcHHHHH
Confidence 5889999999998 6 678999999999999999864210 112348899887643
No 382
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=85.53 E-value=1.2 Score=36.46 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=39.3
Q ss_pred CCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhc
Q 021867 51 MTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNAS 107 (306)
Q Consensus 51 ~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (306)
.|..+||+.+|+ +...+.|.+..|...+++.+.. .|.|..+|.-
T Consensus 76 ~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~----------~G~Y~iNP~~ 119 (165)
T PF05732_consen 76 ATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR----------NGAYMINPNF 119 (165)
T ss_pred eeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc----------CCeEEECcHH
Confidence 578999999999 6789999999999999999886 5899999853
No 383
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=85.44 E-value=0.82 Score=37.35 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.+|+|++||++++|+ +...++--++-|...|++...-
T Consensus 39 ~~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 39 RKPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence 489999999999999 6789999999999999999874
No 384
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=85.35 E-value=1.4 Score=33.80 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=34.0
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.++|++|||+.+.+ +++.++.+|+.|...|.++..+
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 6899999999999999999986
No 385
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=85.33 E-value=1.5 Score=36.70 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=47.7
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
+.++..|..+ +++|..+||+.+++ +...+.++++-|...|++.+...... .-.-...+|+.++.+.
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~D----rR~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKEDD----KRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCC----CCeeEEEECHHHHHHH
Confidence 3456666654 68999999999999 67889999999999999998752100 0012366788777554
No 386
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=85.12 E-value=0.91 Score=36.33 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=41.9
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.+..++..|..+ ++.+..+||+++|+ ++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~d-~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQED-ARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 456678888874 78999999999999 6789999999999999999874
No 387
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.10 E-value=0.97 Score=42.80 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=63.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC--eEEEecc-hHHHHhchh-cC-----CCeEEEeccCCC---CCC---CccEEE
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAFPNL--ECTDFDL-PHVVNGLES-DL-----ANLKYVGGDMFE---AIP---PADAVL 260 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~Dl-~~~~~~a~~-~~-----~rv~~~~~d~~~---~~p---~~D~~~ 260 (306)
.+..+.|+|.|.|.-.-.+....++. .++.+|. ..+...... .. ..+....--|+. |.+ +||+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 46788899998877666666666664 3677787 445544443 11 122222212333 433 499999
Q ss_pred ehhhhccCCch-HHHHHHHHHHH-hcCCCCCCcEEEEEeee
Q 021867 261 LKWILHDWNDE-ECVKILKKCKE-AVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 261 ~~~vlh~~~d~-~~~~iL~~~~~-~L~p~~~gg~lli~e~~ 299 (306)
+.++||..... ....+.++.++ +.++ |+.++|+|.-
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g 317 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKG 317 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecC
Confidence 99999987653 33444555554 4566 8999999864
No 388
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=84.92 E-value=1 Score=38.26 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.+.|++|+|+++|+ +.-..+|.|.+|++.|++..+-
T Consensus 171 ~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~i 207 (224)
T COG4565 171 DQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAEI 207 (224)
T ss_pred CCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEEe
Confidence 379999999999999 6789999999999999999763
No 389
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=84.78 E-value=1.1 Score=32.80 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=40.7
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.+.|+.+|... +|-.+.-||..+++ +...+.+.++-|..+|++++..
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 45566677665 78999999999999 7899999999999999999986
No 390
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=84.27 E-value=1.2 Score=39.08 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=40.1
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..|.+.|.+. +.+++.|||+.+|+ ++..++|-|+.|...|++.+..
T Consensus 8 ~~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 8 QILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 3466777764 78999999999999 7899999999999999999875
No 391
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=83.99 E-value=0.7 Score=35.53 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=41.6
Q ss_pred HHHHhCcccccccCCCCCCHHHHHHhcCCC--CCCcchHHHHHHHHHHcCceeeecc
Q 021867 34 CAVELGIPDIINKHGKPMTLNELVSALTIN--PSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~--~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
+.-+.-|++.|...+.+.|+++|-+.+.-. ..+...++|.|+.|...|++.+...
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~ 63 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEF 63 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEc
Confidence 344566777787666799999999998421 1155689999999999999999863
No 392
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=83.82 E-value=0.66 Score=34.83 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=32.7
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|++.|..+ +.++-++||+.+|+ ++.-++++|..|...|++....
T Consensus 18 Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 18 ILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 56667644 68999999999999 7899999999999999997664
No 393
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=83.75 E-value=1.7 Score=36.63 Aligned_cols=37 Identities=16% Similarity=0.428 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHhcCCCCCC-cchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSK-TRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~-~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+-|.|+.|||+.+|+ + ...+.+.|+.|...|+++...
T Consensus 23 ~~~~~~~ela~~~~~---~s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 23 GYPPSIREIARAVGL---RSPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCCcHHHHHHHhCC---CChHHHHHHHHHHHHCCCEecCC
Confidence 457899999999999 5 789999999999999999874
No 394
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.71 E-value=5.9 Score=36.57 Aligned_cols=94 Identities=23% Similarity=0.244 Sum_probs=66.5
Q ss_pred CeEEEecCC-ccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-CCCeEEEecc-C----CC-CCC-CccEEEehhhhc
Q 021867 198 NSLVDVGGG-IGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-LANLKYVGGD-M----FE-AIP-PADAVLLKWILH 266 (306)
Q Consensus 198 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-~~rv~~~~~d-~----~~-~~p-~~D~~~~~~vlh 266 (306)
.+|+=+||| .|.++..+++.+.-.++++.|. +.-++.|++ . .+.+.....+ . .+ .-. ++|+++=.--
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 389999999 6777799999999899999999 888888886 2 2323332222 1 11 111 4898876554
Q ss_pred cCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 267 DWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 267 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
....+..+.+++++ +|+++++-..-++
T Consensus 248 ------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 12368888899999 8999998766444
No 395
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=83.49 E-value=1.3 Score=38.91 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=54.5
Q ss_pred CCCeEEEecCCccHHHHHH---HHHC--CCCeEEEecc----hHHHH-----------------------hchh------
Q 021867 196 GLNSLVDVGGGIGTVAKAI---AKAF--PNLECTDFDL----PHVVN-----------------------GLES------ 237 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l---~~~~--p~~~~~~~Dl----~~~~~-----------------------~a~~------ 237 (306)
-+..|+++|+-.|..+..+ ++.+ ++-++.++|. |+.-. ..++
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 3578999999999766544 4443 4557899987 33221 0111
Q ss_pred -cCCCeEEEeccCCCCCCC--ccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeec
Q 021867 238 -DLANLKYVGGDMFEAIPP--ADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 238 -~~~rv~~~~~d~~~~~p~--~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~ 300 (306)
..++|+++.|.|.+..|. .+-|-+-++=-||=++ ....|..++.-|.| ||.|++-|+..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~---GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSP---GGIIIFDDYGH 215 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEE---EEEEEESSTTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCC---CeEEEEeCCCC
Confidence 247899999999764442 1111111111133233 46789999999998 77777766543
No 396
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=83.46 E-value=0.86 Score=33.99 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=36.5
Q ss_pred HhCccccccc---CCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 37 ELGIPDIINK---HGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 37 ~lglfd~L~~---~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.-.||++|.. ...++++++|++++++ +...++..++.|...|++-..-
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGM---SENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHSTS----HHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHhCc---CHHHHHHHHHHHHhCCeEeccc
Confidence 3344444443 2367999999999999 7899999999999999987653
No 397
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.46 E-value=6.7 Score=32.14 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=57.7
Q ss_pred ecCCccHHHHHHHHHCC---CCeEEEecch-HHHHhchh--------cCCCeEEEec-cCCC---CC--C--CccEEEeh
Q 021867 203 VGGGIGTVAKAIAKAFP---NLECTDFDLP-HVVNGLES--------DLANLKYVGG-DMFE---AI--P--PADAVLLK 262 (306)
Q Consensus 203 vGgG~G~~~~~l~~~~p---~~~~~~~Dl~-~~~~~a~~--------~~~rv~~~~~-d~~~---~~--p--~~D~~~~~ 262 (306)
||=|.-.++..|++.++ ++.++.+|.. ++.+.-.. ....+++.-+ |..+ .. . .||.|++.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 67888899999999988 4456777763 33333221 2333444433 5544 12 1 49999998
Q ss_pred hhhccCC-----------chHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 263 WILHDWN-----------DEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 263 ~vlh~~~-----------d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+.-.-.. .+-...+++++.+.|++ +|.|.|.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVT 124 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVT 124 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 8765411 12235678899999998 7888875
No 398
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=83.44 E-value=4.1 Score=32.39 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=47.7
Q ss_pred eEEEecc-hHHHHhchh------cCCCeEEEeccCCC---CCC--CccEEEehhhhccCC--c-------hHHHHHHHHH
Q 021867 222 ECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP--PADAVLLKWILHDWN--D-------EECVKILKKC 280 (306)
Q Consensus 222 ~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p--~~D~~~~~~vlh~~~--d-------~~~~~iL~~~ 280 (306)
++.+||+ ++.++.+++ ..+||+++..+-.. -++ ..|+++++.=- +| | +--...|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY--LPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY--LPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB---CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc--CCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 788887776 45789999875544 234 37777765322 22 1 2346679999
Q ss_pred HHhcCCCCCCcEEEEEeeec
Q 021867 281 KEAVTSDDKKGKVIIIDMIR 300 (306)
Q Consensus 281 ~~~L~p~~~gg~lli~e~~~ 300 (306)
.+.|+| ||.+.|+=+.-
T Consensus 79 l~lL~~---gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPG 95 (140)
T ss_dssp HHHEEE---EEEEEEEE--S
T ss_pred HHhhcc---CCEEEEEEeCC
Confidence 999999 89998876543
No 399
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=83.00 E-value=4.8 Score=35.22 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=25.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCC--------CeEEEecch
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPN--------LECTDFDLP 229 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl~ 229 (306)
+-+|+++|+|+|.++..+++.... +++++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 479999999999999998886543 478999983
No 400
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=82.77 E-value=2.5 Score=33.66 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=34.3
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecc
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
|++|.+|||-+.|+ ..+.+---|.++++-|-|.+...
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~q 41 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVNQ 41 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEecC
Confidence 89999999999999 67999999999999999999863
No 401
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=82.48 E-value=1.5 Score=42.18 Aligned_cols=69 Identities=12% Similarity=0.223 Sum_probs=54.3
Q ss_pred HHHhCcccccccCCCC-CCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch-hhhc
Q 021867 35 AVELGIPDIINKHGKP-MTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK-LLLK 112 (306)
Q Consensus 35 a~~lglfd~L~~~~~~-~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~-~l~~ 112 (306)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.++ ++..
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~--------~~~~~LT~eG~~~l~~ 70 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK--------RETWVLTEEGKKYAAE 70 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE--------EEEEEECHHHHHHHHc
Confidence 4566777778753 44 899999999999 789999999999999999877531 47799999998 4444
Q ss_pred CCC
Q 021867 113 DNP 115 (306)
Q Consensus 113 ~~~ 115 (306)
..|
T Consensus 71 G~P 73 (492)
T PLN02853 71 GSP 73 (492)
T ss_pred CCH
Confidence 443
No 402
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=82.40 E-value=1.3 Score=39.05 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=40.6
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+..|.+.|.+. +.+++.|||+.+++ ++..++|-|..|...|++.+..
T Consensus 7 ~~~Il~~l~~~-~~~~~~ela~~l~v---S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 7 HDAIIELVKQQ-GYVSTEELVEHFSV---SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 34466777764 78999999999999 7899999999999999999885
No 403
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.18 E-value=2.4 Score=36.54 Aligned_cols=94 Identities=20% Similarity=0.353 Sum_probs=66.1
Q ss_pred hhcCCCeEEEecCCccHHHHHHHHHCCC----C-----eEEEecchHHHHhchhcCCCeEEEeccCCCC---------CC
Q 021867 193 VFEGLNSLVDVGGGIGTVAKAIAKAFPN----L-----ECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------IP 254 (306)
Q Consensus 193 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~----~-----~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~p 254 (306)
.+.+..++||+=...|.++..|.++.-. - ++|.+|+..|. ..+.|.-..+|+..+ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----PI~GV~qlq~DIT~~stae~Ii~hfg 112 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----PIEGVIQLQGDITSASTAEAIIEHFG 112 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----ccCceEEeecccCCHhHHHHHHHHhC
Confidence 4678899999999999999988776322 1 28899986654 357788888998873 22
Q ss_pred --CccEEEehhh-----hccCCchHHHHH----HHHHHHhcCCCCCCcEEE
Q 021867 255 --PADAVLLKWI-----LHDWNDEECVKI----LKKCKEAVTSDDKKGKVI 294 (306)
Q Consensus 255 --~~D~~~~~~v-----lh~~~d~~~~~i----L~~~~~~L~p~~~gg~ll 294 (306)
.+|+|++--. +|+++.=-..++ |.-...+|+| ||.++
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 3899998543 687765322233 4445567898 88875
No 404
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=82.03 E-value=2.2 Score=35.08 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=41.5
Q ss_pred HHHHhCcccccccCCCCCCHHHHHHhcCCC--CCCcchHHHHHHHHHHcCceeeec
Q 021867 34 CAVELGIPDIINKHGKPMTLNELVSALTIN--PSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~--~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.-+.-|+++|...++++|+++|.+.+.-. ..+...++|.|+.|...|++.+..
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 344566777776555799999999988431 115678999999999999999885
No 405
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=81.81 E-value=1.4 Score=42.04 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=35.5
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecc
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
|...|.. +|.|+.||++.+|+ +...+++.|+.| .|+|...++
T Consensus 5 ~~~~L~~--g~~~~~eL~~~l~~---sq~~~s~~L~~L--~~~V~~~~~ 46 (442)
T PRK09775 5 LTTLLLQ--GPLSAAELAARLGV---SQATLSRLLAAL--GDQVVRFGK 46 (442)
T ss_pred HHHHHhc--CCCCHHHHHHHhCC---CHHHHHHHHHHh--hcceeEecc
Confidence 3445665 89999999999999 789999999999 888887763
No 406
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.66 E-value=3.6 Score=36.37 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=31.6
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEecch
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAF-----PNLECTDFDLP 229 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl~ 229 (306)
+.+...++|+|||.|.++..+++.. +..+++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4667799999999999999999998 56789999983
No 407
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=81.18 E-value=2.4 Score=37.75 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=39.4
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhc
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNAS 107 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (306)
+..++++||+.|+-. .+..-++.-|+.|..+|++++.+ +|.|..|..+
T Consensus 136 ~~~~~~~ia~~l~p~-is~~ev~~sL~~L~~~glikk~~----------~g~y~~t~~~ 183 (271)
T TIGR02147 136 FADDPEELAKRCFPK-ISAEQVKESLDLLERLGLIKKNE----------DGFYKQTDKA 183 (271)
T ss_pred CCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHCCCeeECC----------CCcEEeecce
Confidence 344789999999821 16788999999999999999986 6889988765
No 408
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=80.75 E-value=1.7 Score=38.66 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=40.9
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
...|.+.|... +.+++.|||+.+++ ++..++|=|..|...|++.+..
T Consensus 19 ~~~Il~~L~~~-~~vtv~eLa~~l~V---S~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 19 REQIIQRLRQQ-GSVQVNDLSALYGV---STVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHHCC---CHHHHHHHHHHHHhCCCeEEEe
Confidence 44567777764 68999999999999 7899999999999999999885
No 409
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=80.63 E-value=3.1 Score=37.26 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=51.6
Q ss_pred hHHHHhchhcCCCeEEEeccCCC-----CCCCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 229 PHVVNGLESDLANLKYVGGDMFE-----AIPPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 229 ~~~~~~a~~~~~rv~~~~~d~~~-----~~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
+.+-+.+++...||.++.+|+.+ |..+.|-|++..+--..+|.+...++.++.+.+.+ |.+++.-
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifR 365 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFR 365 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEe
Confidence 34444444467889999999876 23368999999999888999999999999999999 7777764
No 410
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=80.52 E-value=2.2 Score=37.24 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=38.9
Q ss_pred CcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 39 GIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.|.+.|.++ +.++++|||+.+++ ++..++|-|..|...|.+.+..
T Consensus 8 ~Il~~l~~~-~~~~~~eLa~~l~V---S~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 8 AIVDLLLNH-TSLTTEALAEQLNV---SKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 356677664 79999999999999 7899999999999999998764
No 411
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=80.48 E-value=1.4 Score=38.77 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=41.1
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+..|.+.|.+. +.+++.|||+.+++ ++..++|=|+.|...|++.+..
T Consensus 7 ~~~Il~~L~~~-~~v~v~eLa~~l~V---S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 7 QAAILEYLQKQ-GKTSVEELAQYFDT---TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHc-CCEEHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 34567788764 78999999999999 6899999999999999999885
No 412
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=80.39 E-value=6 Score=36.51 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHHHhchhhhHHHHHhhchhhhcCCCeEEEecCCccHHHHHHHHH----CC----CCeEEEecc
Q 021867 163 DEPKINNFFNEAMASDARLATRVVIHKCKDVFEGLNSLVDVGGGIGTVAKAIAKA----FP----NLECTDFDL 228 (306)
Q Consensus 163 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~p----~~~~~~~Dl 228 (306)
..|+....|.+..+.+- .+ +...+. .+.+-.+|++|.|+|.++..+++. +| .+++.+++.
T Consensus 50 TApels~lFGella~~~---~~-~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~ 117 (370)
T COG1565 50 TAPELSQLFGELLAEQF---LQ-LWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP 117 (370)
T ss_pred echhHHHHHHHHHHHHH---HH-HHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence 46777777777654332 11 112222 345678999999999999888765 44 567888887
No 413
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.34 E-value=12 Score=34.49 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=62.1
Q ss_pred hcCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEecc-hHHHHhchhc-CCCeEEEe-ccCCCCCCC-ccEEEehhhhccC
Q 021867 194 FEGLNSLVDVGGG-IGTVAKAIAKAFPNLECTDFDL-PHVVNGLESD-LANLKYVG-GDMFEAIPP-ADAVLLKWILHDW 268 (306)
Q Consensus 194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~~rv~~~~-~d~~~~~p~-~D~~~~~~vlh~~ 268 (306)
.....+|+=+|.| -|+++.+++++.- .+++++|. ++-.+.|++. .+.+--.. .|..++.++ +|+++-.-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4456777777765 7799999999776 89999999 6667777763 23221111 233333333 788776543 1
Q ss_pred CchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 269 NDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 269 ~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
.-+....+.|++ +|+++++-..
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~ 261 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLP 261 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCC
Confidence 236667788898 8999998776
No 414
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=80.34 E-value=2.1 Score=38.98 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=37.0
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
..|.+.|.+ +.+.+.++||+.+|+ +...+.+.++.|...|+....
T Consensus 7 ~~il~~L~~-~~~~s~~~LA~~lgv---sr~tV~~~l~~L~~~G~~i~~ 51 (319)
T PRK11886 7 LQLLSLLAD-GDFHSGEQLGEELGI---SRAAIWKHIQTLEEWGLDIFS 51 (319)
T ss_pred HHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceEE
Confidence 345666665 368999999999999 689999999999999994444
No 415
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=80.32 E-value=2.1 Score=41.22 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=53.2
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch-hhhcCC
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK-LLLKDN 114 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~-~l~~~~ 114 (306)
.+..|+..|...++..+..+||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.++ ++....
T Consensus 7 ~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~--------~~~~~LT~eG~~~~~~G~ 75 (494)
T PTZ00326 7 EENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK--------SNTWTLTEEGEDYLKNGS 75 (494)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE--------EEEEEECHHHHHHHHcCC
Confidence 345566666642357999999999999 789999999999999999877531 46799999998 444444
Q ss_pred C
Q 021867 115 P 115 (306)
Q Consensus 115 ~ 115 (306)
|
T Consensus 76 P 76 (494)
T PTZ00326 76 P 76 (494)
T ss_pred H
Confidence 3
No 416
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=80.17 E-value=3.2 Score=36.00 Aligned_cols=63 Identities=24% Similarity=0.428 Sum_probs=39.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhc--------hh-------cCCCeEEEeccCCC--CCC--CccE
Q 021867 198 NSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGL--------ES-------DLANLKYVGGDMFE--AIP--PADA 258 (306)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a--------~~-------~~~rv~~~~~d~~~--~~p--~~D~ 258 (306)
.+|||.-+|-|.-+..++.. +.++++++..+++... .+ ...||+++.+|..+ ..+ .+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999988865 5689999985444331 11 23589999999887 333 5899
Q ss_pred EEeh
Q 021867 259 VLLK 262 (306)
Q Consensus 259 ~~~~ 262 (306)
|++-
T Consensus 155 VY~D 158 (234)
T PF04445_consen 155 VYFD 158 (234)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9874
No 417
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=79.98 E-value=2.8 Score=34.73 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCHHHHHHhc-CCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 51 MTLNELVSAL-TINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 51 ~t~~eLA~~~-g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.|-.+||+.+ |+ ++..++|+++.|+..|++....
T Consensus 71 pSN~~La~r~~G~---s~~tlrR~l~~LveaGLI~rrD 105 (177)
T PF03428_consen 71 PSNAQLAERLNGM---SERTLRRHLARLVEAGLIVRRD 105 (177)
T ss_pred cCHHHHHHHHcCC---CHHHHHHHHHHHHHCCCeeecc
Confidence 4779999999 99 7899999999999999999875
No 418
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.96 E-value=5.1 Score=33.43 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=53.9
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------------cCCCeEEEeccCCCCCCCccEE
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------------DLANLKYVGGDMFEAIPPADAV 259 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~~rv~~~~~d~~~~~p~~D~~ 259 (306)
+|.=+|.|.=.+..+++-+-.+.+++++|. ++.++..++ ...|+.+. -|+.+....+|+|
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 466788885444433333333578999999 666666554 12333333 1222213357888
Q ss_pred EehhhhccCCc-----hHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 260 LLKWILHDWND-----EECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 260 ~~~~vlh~~~d-----~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
+++----...+ ......++.+.+.+++ +.++|++..+|.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvpp 124 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPP 124 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSST
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEE
Confidence 77664432221 3356678899999997 888888887765
No 419
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=79.45 E-value=1.8 Score=34.62 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=43.0
Q ss_pred HHHhCcccccccCCCCCCHHHHHHhcCC--CCCCcchHHHHHHHHHHcCceeeec
Q 021867 35 AVELGIPDIINKHGKPMTLNELVSALTI--NPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 35 a~~lglfd~L~~~~~~~t~~eLA~~~g~--~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
--+..|+++|..++++.|+++|=+.+.- ++.+...++|.|+.|...|++.+-.
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 3467788888877688999999888753 2226678999999999999999986
No 420
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=79.01 E-value=2.7 Score=32.91 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=37.9
Q ss_pred HHhCcccccccCCCCCCHHHHHHhc----CCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 36 VELGIPDIINKHGKPMTLNELVSAL----TINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~----g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.++.|...|-.. ++.|+.+|.+.+ ++ +...+..+|+-|...|++....
T Consensus 5 ~E~~VM~vlW~~-~~~t~~eI~~~l~~~~~~---~~tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 5 AEWEVMRVVWTL-GETTSRDIIRILAEKKDW---SDSTIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhhccCC---cHHHHHHHHHHHHHCCceeeec
Confidence 455666677654 689999977765 56 5688999999999999999775
No 421
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=78.91 E-value=0.98 Score=28.25 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=17.0
Q ss_pred CCCHHHHHHhcCCCCCCcchHHHHHH
Q 021867 50 PMTLNELVSALTINPSKTRCVYRLMR 75 (306)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~rlLr 75 (306)
+.|+.+||+.+|+ +...++|+|+
T Consensus 21 G~si~~IA~~~gv---sr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGV---SRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS----HHHHHHHHC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHh
Confidence 4999999999999 6778888764
No 422
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=78.39 E-value=12 Score=30.11 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=24.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL 228 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 228 (306)
..-|+|+|=|.|..=-+|.+.+|+-++.++|.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 46799999999999999999999999999997
No 423
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=78.27 E-value=2.5 Score=36.13 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 39 GIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.|++++.....+.|..|||+++++ ++..+++.+..|+..|++...-
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~i---S~~Tv~~~~~~~~~~~~~~~~~ 211 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALTI---SRTTARRYLEYCASRHLIIAEI 211 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhCc---cHHHHHHHHHHHHhCCeEEEEe
Confidence 355666641136899999999999 7899999999999999999874
No 424
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=78.13 E-value=3 Score=34.54 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=42.0
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
++..|+|.|..+|...|+-+||+++|+ +...+-|.|.-|...|.|....
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i---~k~~vNr~LY~L~~~~~v~~~~ 53 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGI---SKHEANRCLYRLLESDAVSCED 53 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCc---cHHHHHHHHHHHhhcCcEecCC
Confidence 567788999987546999999999999 6678999999999999997664
No 425
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=77.88 E-value=1.7 Score=26.79 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=24.0
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHH
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMR 75 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr 75 (306)
++..|+..|..+ +..+..+||+.+|+ ++..+.+=++
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lgl---S~~~v~~Ri~ 39 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGL---SESTVRRRIR 39 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS----HHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCc---CHHHHHHHHH
Confidence 345677778764 79999999999999 4555444333
No 426
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=77.05 E-value=2.4 Score=31.92 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=48.7
Q ss_pred HHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhh
Q 021867 34 CAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLL 111 (306)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (306)
...++.++..|... ++.+..+||+.+++ ++..+.++++-|...|++.+......+ =.-.+.+|+.++.+.
T Consensus 21 t~~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~Dr----R~~~l~lT~~G~~~~ 90 (126)
T COG1846 21 TPPQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPEDR----RAVLVRLTEKGRELL 90 (126)
T ss_pred CHHHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcccc----ceeeEEECccHHHHH
Confidence 33455566666653 34444999999999 789999999999999999998631100 012477777776444
No 427
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=76.83 E-value=3 Score=36.13 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=39.8
Q ss_pred CcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 39 GIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.||+.|...++-++..+||+++|+ +...+++-++.|.+.|+++..+
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGV---SRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecc
Confidence 467788763478999999999999 6789999999999999999874
No 428
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=76.78 E-value=2.5 Score=37.23 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=40.8
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
-.|+++|.+. +.++++|||+.+++ ++..++|=|+.|...|++.+..
T Consensus 8 ~~Il~~l~~~-g~v~v~eLa~~~~V---S~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 8 QKILELLKEK-GKVSVEELAELFGV---SEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHHc-CcEEHHHHHHHhCC---CHHHHHHhHHHHHHCCcEEEEe
Confidence 3467778775 79999999999999 7899999999999999999985
No 429
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=76.61 E-value=5.8 Score=32.88 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=30.4
Q ss_pred ccEEEehhhhccCCc----------hHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 256 ADAVLLKWILHDWND----------EECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 256 ~D~~~~~~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
.|+|+++++|||++- +...++++++.++|+| +.++|.-+.+|
T Consensus 51 ~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~P 102 (183)
T cd01842 51 LDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMP 102 (183)
T ss_pred eeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCC
Confidence 699999999999764 3345677788888887 45555555544
No 430
>PRK09462 fur ferric uptake regulator; Provisional
Probab=76.55 E-value=3 Score=33.41 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=40.8
Q ss_pred HHHHhCcccccccC-CCCCCHHHHHHhcCC--CCCCcchHHHHHHHHHHcCceeeec
Q 021867 34 CAVELGIPDIINKH-GKPMTLNELVSALTI--NPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 34 ~a~~lglfd~L~~~-~~~~t~~eLA~~~g~--~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.-+.-|++.|... ++++|++||-+.+.- +..+...++|.|+.|+..|++.+..
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34456677788653 369999999998832 1125678999999999999998875
No 431
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=76.33 E-value=3.6 Score=29.72 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=33.0
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.-+|+..||+++++ +-...++.||.|...|++....
T Consensus 40 K~ITps~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGI---KISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcc---hHHHHHHHHHHHHHCCCEEEEe
Confidence 67899999999999 7789999999999999998774
No 432
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=75.95 E-value=2 Score=31.57 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHH
Q 021867 33 KCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILI 78 (306)
Q Consensus 33 ~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~ 78 (306)
..+.+++|+..|-. +++|-.|||+.+|+ +...+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~--~~~tQrEIa~~lGi---S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLN--GNMSQREIASKLGV---SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHhCC---ChhhhhHHHhhcc
Confidence 34668999998765 78999999999999 6778888776664
No 433
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=75.91 E-value=2.4 Score=28.62 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=33.0
Q ss_pred ccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 41 PDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
++.|-.. |+.|..+|++.+++ +++.++.-|-.|...|++...
T Consensus 19 ~~~Ll~~-G~ltl~~i~~~t~l---~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 19 GEVLLSR-GRLTLREIVRRTGL---SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHC--SEEHHHHHHHHT-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHcCCeeee
Confidence 3444433 78999999999999 689999999999999999865
No 434
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.81 E-value=17 Score=33.12 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=64.6
Q ss_pred hcCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcC-CCeEEEeccC-----CCC----CC--CccEE
Q 021867 194 FEGLNSLVDVGGG-IGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDL-ANLKYVGGDM-----FEA----IP--PADAV 259 (306)
Q Consensus 194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~-~rv~~~~~d~-----~~~----~p--~~D~~ 259 (306)
+....++|-+|+| .|......++.+-..++++.|+ +.-++.|++.. +.+....+.- .+- .. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 4567899999999 6777788899998889999999 88899998822 2222222211 110 01 15666
Q ss_pred EehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeee
Q 021867 260 LLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMI 299 (306)
Q Consensus 260 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~ 299 (306)
+-...++ .-++.+..++++ ||++++++.-
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g 275 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMG 275 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccC
Confidence 6555443 336677788998 8998888754
No 435
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=75.42 E-value=3.3 Score=31.72 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=35.5
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|.+++. .|.|++|||..+++ +...++-++--|...|++....
T Consensus 48 Il~lC~---~~~SVAEiAA~L~l---PlgVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 48 ILELCR---RPLSVAEIAARLGL---PLGVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred HHHHHC---CCccHHHHHHhhCC---CchhhhhhHHHHHhCCCEEEeC
Confidence 344444 59999999999999 5688899999999999999876
No 436
>PRK00215 LexA repressor; Validated
Probab=75.40 E-value=3.3 Score=34.97 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHhcCC-CCCCcchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTI-NPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.+.|..|||+.+|+ + ...+.|+|+.|...|++++..
T Consensus 21 ~~~~s~~ela~~~~~~~---~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADALGLRS---PSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHhCCCC---hHHHHHHHHHHHHCCCEEeCC
Confidence 467899999999999 4 578999999999999999875
No 437
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=75.24 E-value=6.8 Score=36.41 Aligned_cols=38 Identities=24% Similarity=0.579 Sum_probs=31.5
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHH
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVV 232 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~ 232 (306)
+.+...++|+|.|.|+++.-+.-.| ++++.++|-....
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRL 188 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHH
Confidence 5677899999999999998888776 6789999985443
No 438
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=75.17 E-value=14 Score=33.01 Aligned_cols=82 Identities=20% Similarity=0.091 Sum_probs=53.9
Q ss_pred CeEEEecCC--ccHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEe-ccC-CCCCCCccEEEehhhhccCCchH
Q 021867 198 NSLVDVGGG--IGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVG-GDM-FEAIPPADAVLLKWILHDWNDEE 272 (306)
Q Consensus 198 ~~vlDvGgG--~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~-~d~-~~~~p~~D~~~~~~vlh~~~d~~ 272 (306)
.+|+=+|.| .|.++..|.++.+...+++.|. ...++.+.. -.+.... .+. ......+|+|+++-.+ ..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~--lgv~d~~~~~~~~~~~~~aD~VivavPi-----~~ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE--LGVIDELTVAGLAEAAAEADLVIVAVPI-----EA 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh--cCcccccccchhhhhcccCCEEEEeccH-----HH
Confidence 456777777 5677788888888888899998 445555542 1222221 222 2345568999998755 34
Q ss_pred HHHHHHHHHHhcCC
Q 021867 273 CVKILKKCKEAVTS 286 (306)
Q Consensus 273 ~~~iL~~~~~~L~p 286 (306)
...+++++...|++
T Consensus 77 ~~~~l~~l~~~l~~ 90 (279)
T COG0287 77 TEEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHHhcccCCC
Confidence 46788998888887
No 439
>PF13518 HTH_28: Helix-turn-helix domain
Probab=74.91 E-value=3.1 Score=26.36 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=26.4
Q ss_pred CCHHHHHHhcCCCCCCcchHHHHHHHHHHcCc
Q 021867 51 MTLNELVSALTINPSKTRCVYRLMRILIHSGF 82 (306)
Q Consensus 51 ~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~ 82 (306)
.|+.++|+.+|+ +...+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gi---s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGI---SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCC---CHhHHHHHHHHHHhcCH
Confidence 499999999999 67999999999998875
No 440
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=74.46 E-value=28 Score=27.52 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=54.9
Q ss_pred eEEEecC-C-ccHHHHHHHHHCCCC-eEEEecchHHHHhchh---------cCCCeEEEeccCCCCCCCccEEEehhhhc
Q 021867 199 SLVDVGG-G-IGTVAKAIAKAFPNL-ECTDFDLPHVVNGLES---------DLANLKYVGGDMFEAIPPADAVLLKWILH 266 (306)
Q Consensus 199 ~vlDvGg-G-~G~~~~~l~~~~p~~-~~~~~Dl~~~~~~a~~---------~~~rv~~~~~d~~~~~p~~D~~~~~~vlh 266 (306)
+|.=||+ | .|..+..++...+-. +.+++|..+-...+.. ...++.+.. +-++...++|++++.--..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGVP 80 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTSTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEecccc
Confidence 4667788 5 666665555555544 5899999543333322 223344444 5455566899998865443
Q ss_pred cCC---c----hHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 267 DWN---D----EECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 267 ~~~---d----~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
--+ . +...++++++.+.++..+|.+.++++-
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 222 1 334566666666653222368887763
No 441
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=74.32 E-value=55 Score=28.03 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=53.2
Q ss_pred CCCeEEEecCCcc----HHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCC----CCCCccEEE
Q 021867 196 GLNSLVDVGGGIG----TVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE----AIPPADAVL 260 (306)
Q Consensus 196 ~~~~vlDvGgG~G----~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~----~~p~~D~~~ 260 (306)
+.+.||++.++.| .++...+.+.-+-+.+.+-. ++-....++ ..+-++|+.++-.+ .+.++|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4578899865533 33344444444445433322 222222222 35668999887433 244688877
Q ss_pred ehhhhccCCchHHH-HHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 261 LKWILHDWNDEECV-KILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 261 ~~~vlh~~~d~~~~-~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
+- ...++.. ++|+.+. +.| .|-+++.......
T Consensus 121 VD-----c~~~d~~~~vl~~~~--~~~---~GaVVV~~Na~~r 153 (218)
T PF07279_consen 121 VD-----CKREDFAARVLRAAK--LSP---RGAVVVCYNAFSR 153 (218)
T ss_pred Ee-----CCchhHHHHHHHHhc--cCC---CceEEEEeccccC
Confidence 64 4445555 6677543 445 5778887766653
No 442
>PRK12423 LexA repressor; Provisional
Probab=74.29 E-value=3.9 Score=34.61 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 50 PMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+-|..|||+.+|+. ++..++..|+.|...|+++...
T Consensus 25 ~Ps~~eia~~~g~~--s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 25 PPSLAEIAQAFGFA--SRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEecC
Confidence 56999999999952 5678999999999999999875
No 443
>PTZ00357 methyltransferase; Provisional
Probab=74.27 E-value=21 Score=36.05 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=56.7
Q ss_pred CccccccCCchHHHHHHHHHHhchhhhHH------------HH------Hhhchh--hhcCCCeEEEecCCccHHHHHHH
Q 021867 156 SFWVYAGDEPKINNFFNEAMASDARLATR------------VV------IHKCKD--VFEGLNSLVDVGGGIGTVAKAIA 215 (306)
Q Consensus 156 ~~~e~~~~~~~~~~~f~~~m~~~~~~~~~------------~~------~~~~~~--~~~~~~~vlDvGgG~G~~~~~l~ 215 (306)
..||.+++++-..+.|.+++...-....+ .+ +...+. .-.+...|+-+|+|.|-+....+
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 44788888998888888887654211100 00 000110 00122468999999999887776
Q ss_pred HHCC----CCeEEEecc-hHHHHhc--h--h---c-------CCCeEEEeccCCC
Q 021867 216 KAFP----NLECTDFDL-PHVVNGL--E--S---D-------LANLKYVGGDMFE 251 (306)
Q Consensus 216 ~~~p----~~~~~~~Dl-~~~~~~a--~--~---~-------~~rv~~~~~d~~~ 251 (306)
++.. .+++..++- |+.+... + . - .++|+++..||.+
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~ 774 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT 774 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc
Confidence 6554 346677776 3422111 1 1 1 4569999999988
No 444
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=73.99 E-value=7.4 Score=34.24 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCCCCccEEEehhhhccCCchHHHHHHHHHHHhcCC
Q 021867 210 VAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVLLKWILHDWNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 210 ~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p 286 (306)
++..|.++.+..+++++|. +..++.|.+ .+-+.-...+ .+.+.++|+++++-.+ +....+|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~-~g~~~~~~~~-~~~~~~~DlvvlavP~-----~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE-LGIIDEASTD-IEAVEDADLVVLAVPV-----SAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH-TTSSSEEESH-HHHGGCCSEEEE-S-H-----HHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH-CCCeeeccCC-HhHhcCCCEEEEcCCH-----HHHHHHHHHhhhhcCC
Confidence 4678899999999999998 777777753 1222222222 2234468999987644 5567889999888887
No 445
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=73.83 E-value=4.6 Score=33.88 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=32.4
Q ss_pred CCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 50 PMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
++|-.+||+.+|+ .+..+.|+|+.|...|++....
T Consensus 168 ~~t~~~lA~~lG~---tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGC---SREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 7899999999999 6799999999999999999774
No 446
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=73.68 E-value=4.8 Score=27.99 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=36.2
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
|...|+. +..|.+||-+.+|+ +...+...|.-|+..|++.+.
T Consensus 10 IL~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 10 ILIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeee
Confidence 3445555 58999999999999 778899999999999999987
No 447
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=73.65 E-value=2.5 Score=26.72 Aligned_cols=40 Identities=18% Similarity=0.371 Sum_probs=22.2
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCc
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGF 82 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~ 82 (306)
++.+...+.. +.|..+||+.+|+ ++..+++|++.....|+
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgv---s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGV---SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS----HHHHHHHHT-------
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCc---CHHHHHHHHHHcccccc
Confidence 3344444443 6999999999999 78999999987766653
No 448
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.57 E-value=13 Score=31.77 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=40.8
Q ss_pred HHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 35 AVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 35 a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
-.+.+++..+..+ ++.+..|+++-+++ +...++-+||.|.+.++++-..
T Consensus 101 s~R~~Iy~~i~~n-PG~~lsEl~~nl~i---~R~TlRyhlriLe~~~li~a~~ 149 (240)
T COG3398 101 SKRDGIYNYIKPN-PGFSLSELRANLYI---NRSTLRYHLRILESNPLIEAGR 149 (240)
T ss_pred hhHHHHHHHhccC-CCccHHHHHHhcCC---ChHHHHHHHHHHHhCcchhhhc
Confidence 3455667777665 68999999999999 6789999999999999998765
No 449
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=73.40 E-value=4.8 Score=33.19 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=33.1
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
-|+|-++||+.+|+ ....+.|.|+.|...|+++...
T Consensus 142 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 142 LRLSHQAIAEAIGS---TRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 47899999999999 6799999999999999999874
No 450
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=73.35 E-value=5.4 Score=33.73 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|..++-.+||+.+|+ +...++.-|+.|.+.|+++..+
T Consensus 32 G~~L~e~~La~~lgV---SRtpVReAL~~L~~eGlv~~~~ 68 (212)
T TIGR03338 32 GAKLNESDIAARLGV---SRGPVREAFRALEEAGLVRNEK 68 (212)
T ss_pred CCEecHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEec
Confidence 578899999999999 6789999999999999999875
No 451
>PRK13239 alkylmercury lyase; Provisional
Probab=73.22 E-value=2.5 Score=35.93 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=28.7
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHH
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILI 78 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~ 78 (306)
..-|++.|++ |.|.|+++||+.+|. +.+.++..|+.|.
T Consensus 24 ~~~llr~la~-G~pvt~~~lA~~~~~---~~~~v~~~L~~l~ 61 (206)
T PRK13239 24 LVPLLRLLAK-GRPVSVTTLAAALGW---PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCC---CHHHHHHHHHhCC
Confidence 3446677775 799999999999999 5667776666653
No 452
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=73.21 E-value=6.8 Score=33.47 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|..++..+||+.+|+ +...++.-|+.|.+.|+++..+
T Consensus 28 G~~L~e~eLae~lgV---SRtpVREAL~~L~~eGlv~~~~ 64 (224)
T PRK11534 28 DEKLRMSLLTSRYAL---GVGPLREALSQLVAERLVTVVN 64 (224)
T ss_pred CCcCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEEeC
Confidence 568899999999999 6789999999999999999875
No 453
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=73.10 E-value=5.4 Score=34.20 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=33.0
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
-|+|-++||+.+|+ ....+.|+|+.|...|+++...
T Consensus 183 ~~lt~~~iA~~lG~---sr~tvsR~l~~l~~~g~I~~~~ 218 (235)
T PRK11161 183 LTMTRGDIGNYLGL---TVETISRLLGRFQKSGMLAVKG 218 (235)
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 37899999999999 6789999999999999999884
No 454
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=72.54 E-value=25 Score=34.05 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=58.5
Q ss_pred eEEEecCCccHHHHH--HHHHCCCCeEEEecc-hHHHHhchhc----------------CC-CeEEEeccCCCCCCCccE
Q 021867 199 SLVDVGGGIGTVAKA--IAKAFPNLECTDFDL-PHVVNGLESD----------------LA-NLKYVGGDMFEAIPPADA 258 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~--l~~~~p~~~~~~~Dl-~~~~~~a~~~----------------~~-rv~~~~~d~~~~~p~~D~ 258 (306)
+|.=||.|....... |+++.++.+++++|. ++.++..++. .. ++++. .|+.+....+|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~i~~adv 81 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKHVAEADI 81 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHHHhcCCE
Confidence 477788886655443 455555678999998 6666664430 01 11111 112112335888
Q ss_pred EEehhhh-cc--------CCc-hHHHHHHHHHHHhcCCCCCCcEEEEEeeecCCC
Q 021867 259 VLLKWIL-HD--------WND-EECVKILKKCKEAVTSDDKKGKVIIIDMIRENK 303 (306)
Q Consensus 259 ~~~~~vl-h~--------~~d-~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (306)
+++.--. .+ -+| .......+.+.+.|++ |.++|++..+|..
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~----~~lVv~~STvp~G 132 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS----DKIVVEKSTVPVK 132 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC----CcEEEEeCCCCCC
Confidence 8775321 11 112 3456678888888886 7888888887754
No 455
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=71.78 E-value=19 Score=32.01 Aligned_cols=97 Identities=18% Similarity=0.300 Sum_probs=59.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCe-EEEecc-hHHHHhchhcCCCeEEEeccCCC--C---CCCccEEEehhhhccCC--
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLESDLANLKYVGGDMFE--A---IPPADAVLLKWILHDWN-- 269 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~--~---~p~~D~~~~~~vlh~~~-- 269 (306)
+++|+=||.|.+...+.+.. .+ +..+|. +..++..+...+.. +..+|+.+ + .+.+|+++..-..-.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 68999999999999988764 44 566887 55555444322222 55677765 1 34689998877654432
Q ss_pred -------chHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 270 -------DEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 270 -------d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
|+ ...++.+..+.++.. .-+++++|.+..
T Consensus 79 g~~~~~~d~-r~~L~~~~~~~i~~~--~P~~~v~ENV~g 114 (275)
T cd00315 79 GKRKGFEDT-RGTLFFEIIRILKEK--KPKYFLLENVKG 114 (275)
T ss_pred hhcCCCCCc-hHHHHHHHHHHHHhc--CCCEEEEEcCcc
Confidence 22 223444444444321 237889888743
No 456
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=71.29 E-value=8.4 Score=27.39 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=42.8
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK 108 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (306)
+|..+. +.++|-++||+.+|+ +...+...++.|...|+=.+... ...|.+.....
T Consensus 11 ll~~~~--~~~~SGe~La~~Lgi---SRtaVwK~Iq~Lr~~G~~I~s~~---------~kGY~L~~~~~ 65 (79)
T COG1654 11 LLLLLT--GNFVSGEKLAEELGI---SRTAVWKHIQQLREEGVDIESVR---------GKGYLLPQLPD 65 (79)
T ss_pred HHHHcC--CCcccHHHHHHHHCc---cHHHHHHHHHHHHHhCCceEecC---------CCceeccCccc
Confidence 344443 379999999999999 78899999999999999877752 34677776544
No 457
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.76 E-value=46 Score=25.58 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=53.2
Q ss_pred hcCCCeEEEecCCccHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEeccCCCCC----CCccEEEehhhhccCC
Q 021867 194 FEGLNSLVDVGGGIGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAI----PPADAVLLKWILHDWN 269 (306)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~----p~~D~~~~~~vlh~~~ 269 (306)
....++|++||-|.=......++++. ..++..|+.+- .| .+.+.++.-|+++|- .++|+++.-+ +
T Consensus 11 e~~~gkVvEVGiG~~~~VA~~L~e~g-~dv~atDI~~~--~a---~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----p 79 (129)
T COG1255 11 ENARGKVVEVGIGFFLDVAKRLAERG-FDVLATDINEK--TA---PEGLRFVVDDITNPNISIYEGADLIYSIR-----P 79 (129)
T ss_pred HhcCCcEEEEccchHHHHHHHHHHcC-CcEEEEecccc--cC---cccceEEEccCCCccHHHhhCccceeecC-----C
Confidence 34567999999987655544444442 67888887433 23 378999999999962 3688887765 3
Q ss_pred chHHHHHHHHHHHhcC
Q 021867 270 DEECVKILKKCKEAVT 285 (306)
Q Consensus 270 d~~~~~iL~~~~~~L~ 285 (306)
.++...-+-.+.++.+
T Consensus 80 ppEl~~~ildva~aVg 95 (129)
T COG1255 80 PPELQSAILDVAKAVG 95 (129)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 4444455555555553
No 458
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=70.73 E-value=6.3 Score=29.66 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecc
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
.-+|+..||+++++ +-...++.||.|...|++.....
T Consensus 58 K~ITp~~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~k 94 (105)
T PF03297_consen 58 KLITPSVLSERLKI---NGSLARKALRELESKGLIKPVSK 94 (105)
T ss_dssp SCECHHHHHHHHCC---SCHHHHHHHHHHHHCCSSEEEEC
T ss_pred cEeeHHHHHHhHhh---HHHHHHHHHHHHHHCCCEEEEec
Confidence 56999999999999 67899999999999999998753
No 459
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.70 E-value=16 Score=34.64 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=69.2
Q ss_pred CCCeEEEecC-Ccc------HHHHHHHHHCCCCeEEEecc--hHHHHhchhc--CCCeEEEeccCCC-CCC---------
Q 021867 196 GLNSLVDVGG-GIG------TVAKAIAKAFPNLECTDFDL--PHVVNGLESD--LANLKYVGGDMFE-AIP--------- 254 (306)
Q Consensus 196 ~~~~vlDvGg-G~G------~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~~--~~rv~~~~~d~~~-~~p--------- 254 (306)
.+..|+=+|= |+| -++..|.++....=.+..|. |..+++.+.. .-+|.|...+-.. |+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4566777763 444 33444444433444688887 8888887763 3345555443222 421
Q ss_pred ---CccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecC
Q 021867 255 ---PADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIRE 301 (306)
Q Consensus 255 ---~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~ 301 (306)
.+|++++--.=.+.-|++...-++++.++++| .-.|+|+|...-
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~G 225 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIG 225 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccc
Confidence 27999998777666688888999999999999 789999997653
No 460
>PRK01381 Trp operon repressor; Provisional
Probab=70.59 E-value=3.4 Score=30.66 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=31.6
Q ss_pred HHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHH
Q 021867 34 CAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILI 78 (306)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~ 78 (306)
.+.+++|+..|-+ |++|--|||+.+|+ +...+.|.-+.|-
T Consensus 41 l~~R~~I~~~L~~--g~~sQREIa~~lGv---SiaTITRgsn~Lk 80 (99)
T PRK01381 41 LGTRVRIVEELLR--GELSQREIKQELGV---GIATITRGSNSLK 80 (99)
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHhCC---ceeeehhhHHHhc
Confidence 3568999998876 78999999999999 5566666655554
No 461
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=69.96 E-value=7.5 Score=33.41 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
-++|-.+||+.+|+ .+..+.|+|+.|...|+++..
T Consensus 178 i~lt~~~IA~~lGi---sretlsR~L~~L~~~GlI~~~ 212 (230)
T PRK09391 178 LPMSRRDIADYLGL---TIETVSRALSQLQDRGLIGLS 212 (230)
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEec
Confidence 47899999999999 678999999999999999876
No 462
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=69.91 E-value=4.8 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=20.6
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHH
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILI 78 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~ 78 (306)
.+.++++||+.+|+ ++..+.|.++...
T Consensus 7 ~~~~l~~iA~~~g~---S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF---SPSYFSRLFKKET 33 (42)
T ss_dssp SS--HHHHHHHHTS----HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 57999999999999 7899999887653
No 463
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=69.59 E-value=11 Score=24.90 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=28.6
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+-++++.||++.|+ -...+-.-||-|.+.|+++...
T Consensus 3 g~lvas~iAd~~Gi---TRSvIVNALRKleSaGvIesrS 38 (61)
T PF08222_consen 3 GRLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 38 (61)
T ss_dssp EEE-HHHHHHHHT-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred ceehHHHHHHHhCc---cHHHHHHHHHHHHhcCceeecc
Confidence 45788999999999 4567888999999999999764
No 464
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=69.55 E-value=2.8 Score=29.35 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.1
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceee
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQ 85 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~ 85 (306)
...|..|||+.+|+ ++..++.++..+...|.+.+
T Consensus 31 eGlS~kEIAe~LGI---S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGR---TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHhcCcccchHHH
Confidence 47999999999999 68999999988877777653
No 465
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=69.30 E-value=14 Score=28.75 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=45.0
Q ss_pred cCCCeEEEecCCccHH-HHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEeccCCCCCC----CccEEEehhhhccCC
Q 021867 195 EGLNSLVDVGGGIGTV-AKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIP----PADAVLLKWILHDWN 269 (306)
Q Consensus 195 ~~~~~vlDvGgG~G~~-~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p----~~D~~~~~~vlh~~~ 269 (306)
....+|++||-|.=.- +..|.+.. ..+++.|..+. . ....+.++.-|.|+|-. ++|+++..+.-
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~--~---a~~g~~~v~DDif~P~l~iY~~a~lIYSiRPP---- 80 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR--K---APEGVNFVVDDIFNPNLEIYEGADLIYSIRPP---- 80 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc--c---cccCcceeeecccCCCHHHhcCCcEEEEeCCC----
Confidence 3456999999996644 45555543 78899998332 2 23789999999999743 68999887743
Q ss_pred chHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021867 270 DEECVKILKKCKEAVTSDDKKGKVIII 296 (306)
Q Consensus 270 d~~~~~iL~~~~~~L~p~~~gg~lli~ 296 (306)
++...-+.++++... .-++|.
T Consensus 81 -~El~~~il~lA~~v~-----adlii~ 101 (127)
T PF03686_consen 81 -PELQPPILELAKKVG-----ADLIIR 101 (127)
T ss_dssp -TTSHHHHHHHHHHHT------EEEEE
T ss_pred -hHHhHHHHHHHHHhC-----CCEEEE
Confidence 333444556666553 455554
No 466
>PRK11642 exoribonuclease R; Provisional
Probab=69.23 E-value=5.6 Score=41.12 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=37.7
Q ss_pred cccccccCCCCCCHHHHHHhcCCCCC-CcchHHHHHHHHHHcCceeeec
Q 021867 40 IPDIINKHGKPMTLNELVSALTINPS-KTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~-~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|++.|...+.|++..+|++.++++.. +...+.+.|+.|...|.+....
T Consensus 24 Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~ 72 (813)
T PRK11642 24 ILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR 72 (813)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC
Confidence 45555544489999999999999531 2356999999999999998765
No 467
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.16 E-value=8 Score=27.33 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecCh
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKN 105 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (306)
+...++.+|-+++|+ +.+.++.++.+|-..|+.-+-..++.||+ .|.|.+..
T Consensus 20 ~e~~nVP~lm~~TGw---PRRT~QDvikAlpglgi~l~FvQ~G~Rnn---~GyYql~d 71 (95)
T COG4519 20 GETANVPELMAATGW---PRRTAQDVIKALPGLGIVLEFVQEGARNN---QGYYQLRD 71 (95)
T ss_pred cccCChHHHHHHcCC---chhHHHHHHHhCcCCCeEEEeeecccccC---CCceEeee
Confidence 357899999999999 56899999999999999876654434433 45555543
No 468
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=68.90 E-value=3.9 Score=29.66 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecCh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKN 105 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (306)
+..++..|-+.+|+ +.+.+++.+.+|...|+-.+-..++.||+ .|.|+.+.
T Consensus 20 ~~~nvp~L~~~TGm---PrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~---~GyY~i~~ 70 (90)
T PF09904_consen 20 GERNVPALMEATGM---PRRTIQDTIKALPELGIECEFVQDGERNN---AGYYRISD 70 (90)
T ss_dssp S-B-HHHHHHHH------HHHHHHHHHGGGGGT-EEEEE--TTS-S-----EEEEEE
T ss_pred CCccHHHHHHHhCC---CHhHHHHHHHHhhcCCeEEEEEecCccCC---CCcEEeee
Confidence 34599999999999 67999999999999999887443333322 56677664
No 469
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=68.68 E-value=8.8 Score=32.96 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=40.1
Q ss_pred HHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 31 SLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 31 ~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.|+.++-.|-|. . |..++-.+||+.+|+ +..-++.-|..|.+.|+++..+
T Consensus 24 ~Lr~~Il~g~l~---p-G~~l~e~~La~~~gv---SrtPVReAL~rL~~eGlv~~~p 73 (230)
T COG1802 24 ELREAILSGELA---P-GERLSEEELAEELGV---SRTPVREALRRLEAEGLVEIEP 73 (230)
T ss_pred HHHHHHHhCCCC---C-CCCccHHHHHHHhCC---CCccHHHHHHHHHHCCCeEecC
Confidence 444444444442 2 589999999999999 6788999999999999999986
No 470
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=68.59 E-value=2.2 Score=35.66 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=39.6
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
-.|.+.|..+ +.+++.+||+.+++ ++..++|=|+.|...|++.+..
T Consensus 10 ~~Il~~l~~~-~~~~~~~La~~~~v---S~~TiRRDl~~L~~~g~~~r~~ 55 (185)
T PRK04424 10 KALQELIEEN-PFITDEELAEKFGV---SIQTIRLDRMELGIPELRERIK 55 (185)
T ss_pred HHHHHHHHHC-CCEEHHHHHHHHCc---CHHHHHHHHHHHhcchHHHHHH
Confidence 3456677764 78999999999999 7899999999999999999873
No 471
>PRK09954 putative kinase; Provisional
Probab=68.48 E-value=4.3 Score=37.49 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=38.1
Q ss_pred HhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCcee
Q 021867 37 ELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFA 84 (306)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~ 84 (306)
+..|+..|.++ +.+|..+||+.+++ +...+.+.++.|...|++.
T Consensus 5 ~~~il~~l~~~-~~~s~~~la~~l~~---s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRN-PLIQQNEIADILQI---SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCcC
Confidence 34477777775 69999999999999 7899999999999999985
No 472
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=68.11 E-value=7 Score=32.52 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeee
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~ 86 (306)
-++|-++||+.+|+ .+..+.|+|..|...|++...
T Consensus 148 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~ 182 (202)
T PRK13918 148 IYATHDELAAAVGS---VRETVTKVIGELSREGYIRSG 182 (202)
T ss_pred ecCCHHHHHHHhCc---cHHHHHHHHHHHHHCCCEEcC
Confidence 47899999999999 678999999999999999965
No 473
>PF14502 HTH_41: Helix-turn-helix domain
Probab=67.71 E-value=15 Score=23.34 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecc
Q 021867 50 PMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (306)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~ 88 (306)
=.|++|+++++++ +...++.-|+.|...|.+.-...
T Consensus 6 i~tI~e~~~~~~v---s~GtiQ~Alk~Le~~gaI~Le~r 41 (48)
T PF14502_consen 6 IPTISEYSEKFGV---SRGTIQNALKFLEENGAIKLESR 41 (48)
T ss_pred cCCHHHHHHHhCc---chhHHHHHHHHHHHCCcEEeeec
Confidence 4689999999999 67899999999999999998763
No 474
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=67.64 E-value=3 Score=37.39 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEeccCCCCCC--CccEEEehhhhcc
Q 021867 197 LNSLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVLLKWILHD 267 (306)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~~~~~~vlh~ 267 (306)
...|+|+=.|.|+|...+.-......+..+|. |+.++..++ ..+|...+.||-..+-| .+|=|.+..+-
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlP-- 272 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLP-- 272 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecccc--
Confidence 37899999999999985554444557899999 888777665 56677777787776555 37777766543
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCc-EEEEEeeecCCC
Q 021867 268 WNDEECVKILKKCKEAVTSDDKKG-KVIIIDMIRENK 303 (306)
Q Consensus 268 ~~d~~~~~iL~~~~~~L~p~~~gg-~lli~e~~~~~~ 303 (306)
-. .+=.-.+-++|+|+ || .+-|.|.+-.++
T Consensus 273 --Ss--e~~W~~A~k~Lk~e--ggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 273 --SS--EQGWPTAIKALKPE--GGSILHIHENVKDSD 303 (351)
T ss_pred --cc--ccchHHHHHHhhhc--CCcEEEEeccccccc
Confidence 21 12233445668885 55 888888876655
No 475
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=67.64 E-value=6 Score=31.68 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=34.3
Q ss_pred CcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCce
Q 021867 39 GIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFF 83 (306)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l 83 (306)
-|++.|-.+ +.+|-++||+.+|+ +...++++|..|...+++
T Consensus 5 ~v~d~L~~~-~~~~dedLa~~l~i---~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 5 LVLDALMRN-GCVTEEDLAELLGI---KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred eehHHHHhc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHhhhcc
Confidence 467777654 68999999999999 789999999999995554
No 476
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=66.72 E-value=13 Score=25.69 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=35.8
Q ss_pred cccCCCCCCHHHHHHh---cCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChh
Q 021867 44 INKHGKPMTLNELVSA---LTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNA 106 (306)
Q Consensus 44 L~~~~~~~t~~eLA~~---~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (306)
+...++++++.+|.+. +|+ ++..++.-|--|++.|+|+.... +..-.|++|+.
T Consensus 14 ~~~~g~~i~~~~Li~ll~~~Gv---~e~avR~alsRl~~~G~L~~~r~-------Gr~~~Y~Lt~~ 69 (70)
T PF07848_consen 14 LRPRGGWIWVASLIRLLAAFGV---SESAVRTALSRLVRRGWLESERR-------GRRSYYRLTER 69 (70)
T ss_dssp CCTTTS-EEHHHHHHHHCCTT-----HHHHHHHHHHHHHTTSEEEECC-------CTEEEEEE-HH
T ss_pred hccCCCceeHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCceeeeec-------CccceEeeCCC
Confidence 4444577777766655 566 78999999999999999999873 11235888874
No 477
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=66.46 E-value=11 Score=29.42 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.=-|+-+||..+|+ ++..++|..+.|...|++....
T Consensus 34 kLPSvRelA~~~~V---NpnTv~raY~eLE~eG~i~t~r 69 (125)
T COG1725 34 KLPSVRELAKDLGV---NPNTVQRAYQELEREGIVETKR 69 (125)
T ss_pred CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 44589999999999 7899999999999999999885
No 478
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=66.39 E-value=5.8 Score=35.57 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHH-HHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMR-ILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr-~L~~~g~l~~~~ 87 (306)
+++.+++++|+.+|. ++..++++++ .|+..|++....
T Consensus 253 ~~~~~~~~ia~~lg~---~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 253 GGPVGLKTLAAALGE---DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCcccHHHHHHHhCC---CcchHHHhhhHHHHHcCCcccCC
Confidence 468999999999999 6789999999 799999998654
No 479
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=66.00 E-value=8 Score=27.65 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 29 SMSLKCAVELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 29 ~~~l~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..++....+..++..|.+. .+.++.+|+..+++ +...+.+.|..|...|++....
T Consensus 19 ~~~l~~~~r~~il~~l~~~-~~~~~~~l~~~~~~---~~~~v~~hL~~L~~~glv~~~~ 73 (110)
T COG0640 19 LKALADPTRLEILSLLAEG-GELTVGELAEALGL---SQSTVSHHLKVLREAGLVELRR 73 (110)
T ss_pred HHHhCCHHHHHHHHHHHhc-CCccHHHHHHHHCC---ChhHHHHHHHHHHHCCCeEEEe
Confidence 3455555677778777752 47899999999998 7899999999999999999976
No 480
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=65.97 E-value=12 Score=31.91 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
|..++..+||+.+|+ +...++.-|+.|...|+++..+
T Consensus 32 G~~L~e~~La~~lgV---SRtpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 32 GARLITKNLAEQLGM---SITPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CCccCHHHHHHHHCC---CchhHHHHHHHHHHCCCEEecC
Confidence 577889999999999 6788999999999999999875
No 481
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=65.92 E-value=42 Score=30.48 Aligned_cols=102 Identities=20% Similarity=0.132 Sum_probs=57.8
Q ss_pred cCCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEecchHHHHhchh--------cCCCeEEEeccCCCCCCCccEEEehhh
Q 021867 195 EGLNSLVDVGGGI-GTVAKAIAKAFPNL-ECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAIPPADAVLLKWI 264 (306)
Q Consensus 195 ~~~~~vlDvGgG~-G~~~~~l~~~~p~~-~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~p~~D~~~~~~v 264 (306)
+.+.+|.=||+|. |..+...+...+-. +.+++|..+-...+.. ...++.+..+|+ +...++|++++..-
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag 82 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAG 82 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecC
Confidence 3456899999985 65555555555544 6899998322222211 123566665443 34667999988554
Q ss_pred hccCC---c----hHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 265 LHDWN---D----EECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 265 lh~~~---d----~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
.-.-+ . .....+++++.+.++..+|.++++++-
T Consensus 83 ~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 83 APQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 32211 1 124567777666664222368887764
No 482
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=65.67 E-value=39 Score=30.38 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=45.9
Q ss_pred CCeEEEecCCc-c-HHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCCCCccEEEehhhhccCCchHH
Q 021867 197 LNSLVDVGGGI-G-TVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVLLKWILHDWNDEEC 273 (306)
Q Consensus 197 ~~~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~~~~~~vlh~~~d~~~ 273 (306)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-... ...+..+...++|++++.-.. ...
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvViiavp~-----~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAEAVKGADLVILCVPV-----GAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHHHhcCCCEEEECCCH-----HHH
Confidence 35788899885 3 34444544433347888898 555555543111111 111211123468988877543 233
Q ss_pred HHHHHHHHHhcCC
Q 021867 274 VKILKKCKEAVTS 286 (306)
Q Consensus 274 ~~iL~~~~~~L~p 286 (306)
..+++.+...+++
T Consensus 80 ~~v~~~l~~~l~~ 92 (307)
T PRK07502 80 GAVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHHhhCCC
Confidence 4567777777887
No 483
>PTZ00117 malate dehydrogenase; Provisional
Probab=65.66 E-value=53 Score=29.87 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=38.5
Q ss_pred CCeEEEecCCc-cHHHHHHHHHCCCCeEEEecchHHHHhchh---------cCCCeEEEe-ccCCCCCCCccEEEehh
Q 021867 197 LNSLVDVGGGI-GTVAKAIAKAFPNLECTDFDLPHVVNGLES---------DLANLKYVG-GDMFEAIPPADAVLLKW 263 (306)
Q Consensus 197 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---------~~~rv~~~~-~d~~~~~p~~D~~~~~~ 263 (306)
..+|.=||+|. |.....++....-..++++|..+-...+.. ......+.. .|+. ...++|++++.-
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35788999998 766666555554357889998332111221 122234333 3432 456799998865
No 484
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=64.99 E-value=23 Score=32.17 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=59.7
Q ss_pred CCeEEEecCC-ccHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEeccCCC---CCCCccEEEehhhhccCCc
Q 021867 197 LNSLVDVGGG-IGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE---AIPPADAVLLKWILHDWND 270 (306)
Q Consensus 197 ~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~---~~p~~D~~~~~~vlh~~~d 270 (306)
+.+|+-|||| .|..+..++--. +..++++|+ ..-+.+... ...||...--+... .++.+|+++-.-.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 4678889999 567776666533 568899998 444444433 46777777655443 4667998876544433333
Q ss_pred hHHHHHHHHHHHhcCCCCCCcEEE
Q 021867 271 EECVKILKKCKEAVTSDDKKGKVI 294 (306)
Q Consensus 271 ~~~~~iL~~~~~~L~p~~~gg~ll 294 (306)
+ .-+.++..+.|+| |+.|+
T Consensus 247 P--kLvt~e~vk~Mkp---GsViv 265 (371)
T COG0686 247 P--KLVTREMVKQMKP---GSVIV 265 (371)
T ss_pred c--eehhHHHHHhcCC---CcEEE
Confidence 3 2457888999999 66443
No 485
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=64.99 E-value=14 Score=37.36 Aligned_cols=93 Identities=23% Similarity=0.260 Sum_probs=58.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHC-------C-----CCeEEEecc-h---HHHHhc-----------hh-----------
Q 021867 196 GLNSLVDVGGGIGTVAKAIAKAF-------P-----NLECTDFDL-P---HVVNGL-----------ES----------- 237 (306)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~-------p-----~~~~~~~Dl-~---~~~~~a-----------~~----------- 237 (306)
..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+ ++
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999998766666544 4 467888885 2 122111 11
Q ss_pred ------cCCC--eEEEeccCCCC---CC-CccEEEehhh-h----ccCCchHHHHHHHHHHHhcCCCCCCcEEEE
Q 021867 238 ------DLAN--LKYVGGDMFEA---IP-PADAVLLKWI-L----HDWNDEECVKILKKCKEAVTSDDKKGKVII 295 (306)
Q Consensus 238 ------~~~r--v~~~~~d~~~~---~p-~~D~~~~~~v-l----h~~~d~~~~~iL~~~~~~L~p~~~gg~lli 295 (306)
..++ +++..||+.+- +. .+|++++--. - .-|+. .+|+.+++.++| ||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~----~~~~~l~~~~~~---~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSP----NLFNALARLARP---GATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccH----HHHHHHHHHhCC---CCEEEE
Confidence 1223 34666888662 22 4899887421 1 12544 579999999999 787763
No 486
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=64.98 E-value=15 Score=28.39 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=41.6
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchh
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKL 109 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (306)
-|.|.++||..++- +...++.-|.++...|+++..+ ++.|..+...+.
T Consensus 52 ipy~~e~LA~~~~~---~~~~V~~AL~~f~k~glIe~~e----------d~~i~i~~~~~~ 99 (121)
T PF09681_consen 52 IPYTAEMLALEFDR---PVDTVRLALAVFQKLGLIEIDE----------DGVIYIPNWEKH 99 (121)
T ss_pred CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec----------CCeEEeecHHHH
Confidence 69999999999998 7899999999999999999986 577877765443
No 487
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=64.85 E-value=41 Score=30.51 Aligned_cols=97 Identities=25% Similarity=0.283 Sum_probs=55.3
Q ss_pred EEEecCCc-cHHHHHHHHHCCCC-eEEEecchHHHHhchh---------c-CCCeEEEeccCCCCCCCccEEEehhhhcc
Q 021867 200 LVDVGGGI-GTVAKAIAKAFPNL-ECTDFDLPHVVNGLES---------D-LANLKYVGGDMFEAIPPADAVLLKWILHD 267 (306)
Q Consensus 200 vlDvGgG~-G~~~~~l~~~~p~~-~~~~~Dl~~~~~~a~~---------~-~~rv~~~~~d~~~~~p~~D~~~~~~vlh~ 267 (306)
|.=||+|. |......+-..+-. ..+++|..+-...+.. . ..++++..+| ++...++|++++.--...
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIVITAGPSI 80 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEEECCCCCC
Confidence 55678875 65553333333333 6899998322222221 1 1356777666 345667999887544422
Q ss_pred ---CCc------hHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 021867 268 ---WND------EECVKILKKCKEAVTSDDKKGKVIIID 297 (306)
Q Consensus 268 ---~~d------~~~~~iL~~~~~~L~p~~~gg~lli~e 297 (306)
-+. ....+|++++.+.++..+|+|.++++-
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 221 345678888888875433478877764
No 488
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=64.59 E-value=37 Score=30.09 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=45.8
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccCCCCCCCccEEEehhhhccCCchHHHH
Q 021867 199 SLVDVGGGI--GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVLLKWILHDWNDEECVK 275 (306)
Q Consensus 199 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~~~~~~vlh~~~d~~~~~ 275 (306)
+|.=||+|. |.++..|.++ +.+++++|. ++.++.+.. ...+.....+. +...++|++++.- +.....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~-~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE-RGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-CCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHH
Confidence 456678773 3455555544 457888997 555565543 11111111111 1233689998874 4455567
Q ss_pred HHHHHHHhcCC
Q 021867 276 ILKKCKEAVTS 286 (306)
Q Consensus 276 iL~~~~~~L~p 286 (306)
+++++.+.+++
T Consensus 73 ~~~~l~~~l~~ 83 (279)
T PRK07417 73 PSEQLIPALPP 83 (279)
T ss_pred HHHHHHHhCCC
Confidence 78888888887
No 489
>PHA02591 hypothetical protein; Provisional
Probab=64.30 E-value=5.3 Score=28.12 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=24.1
Q ss_pred cccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHH
Q 021867 42 DIINKHGKPMTLNELVSALTINPSKTRCVYRLMRI 76 (306)
Q Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~ 76 (306)
..|.+ .+.|.++||+.+|+ +...+++.++.
T Consensus 53 ~eL~e--qGlSqeqIA~~LGV---sqetVrKYL~~ 82 (83)
T PHA02591 53 HELAR--KGFTVEKIASLLGV---SVRKVRRYLES 82 (83)
T ss_pred HHHHH--cCCCHHHHHHHhCC---CHHHHHHHHhc
Confidence 34555 68999999999999 78888887763
No 490
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=64.29 E-value=18 Score=27.93 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=50.9
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhhcCCCCChHHHHHHhcCccchhhh
Q 021867 55 ELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLLKDNPLSVTPFLQAMLDPILLSPW 134 (306)
Q Consensus 55 eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~l~~~~~~~~~~~~~~~~ 134 (306)
+||+.+++ +-+-+--+++++.-+|+++.. +|-..+|+.++.++..+......++.-..- ...+..
T Consensus 2 ~La~~l~~---eiDdL~p~~eAaelLgf~~~~-----------~Gdi~LT~~G~~f~~a~~~~rK~if~~~l~-~~~Pl~ 66 (120)
T PF09821_consen 2 QLADELHL---EIDDLLPIVEAAELLGFAEVE-----------EGDIRLTPLGRRFAEADIDERKEIFREQLL-RHVPLA 66 (120)
T ss_pred chHHHhCC---cHHHHHHHHHHHHHcCCeeec-----------CCcEEeccchHHHHHCChHHHHHHHHHHHH-hcCCHH
Confidence 58889999 678899999999999999988 488999999997775543233333322211 122334
Q ss_pred hhHHHHhhcC
Q 021867 135 LKLSTWFQND 144 (306)
Q Consensus 135 ~~l~~~l~~~ 144 (306)
..+...+++.
T Consensus 67 ~~I~~~L~~~ 76 (120)
T PF09821_consen 67 AHIRRVLRER 76 (120)
T ss_pred HHHHHHHHhC
Confidence 5566666543
No 491
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=64.22 E-value=10 Score=31.72 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=35.2
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
+.++..|+-+ +|+|..+|++..|+ +. ..+++.|...|++.+.+
T Consensus 93 LEtLaiIay~-qPiTr~eI~~irGv---~~---~~ii~~L~~~gLI~e~g 135 (188)
T PRK00135 93 LEVLAIIAYK-QPITRIEIDEIRGV---NS---DGALQTLLAKGLIKEVG 135 (188)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCC---CH---HHHHHHHHHCCCeEEcC
Confidence 4456666654 89999999999999 33 78999999999999754
No 492
>PF13814 Replic_Relax: Replication-relaxation
Probab=64.18 E-value=14 Score=30.60 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=47.7
Q ss_pred ccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhhc
Q 021867 43 IINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLLK 112 (306)
Q Consensus 43 ~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (306)
.|.+. ..+|.++|+..+..+...++.+++.|+.|...|++......-...+...+..|.+|+.+..++.
T Consensus 3 ~L~~~-r~lt~~Qi~~l~~~~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 3 LLARH-RFLTTDQIARLLFPSSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred hHHHh-cCcCHHHHHHHHcCCCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 44544 6899999999999853223479999999999999998763100000123457999999875443
No 493
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=63.69 E-value=10 Score=32.35 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=32.4
Q ss_pred CCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 49 KPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
-+.|-.+||+.+|+ ....+.|.|..|...|+++...
T Consensus 168 ~~~t~~~lA~~lG~---sretvsR~L~~L~~~G~I~~~~ 203 (226)
T PRK10402 168 YHEKHTQAAEYLGV---SYRHLLYVLAQFIQDGYLKKSK 203 (226)
T ss_pred ccchHHHHHHHHCC---cHHHHHHHHHHHHHCCCEEeeC
Confidence 35688999999999 6799999999999999999874
No 494
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=63.40 E-value=22 Score=31.70 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=100.3
Q ss_pred CHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhchhhhcCCCCChHHHHHHhcC----
Q 021867 52 TLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASKLLLKDNPLSVTPFLQAMLD---- 127 (306)
Q Consensus 52 t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~l~~~~~~~~~---- 127 (306)
+.-.|++.... +...+..+++.|...|++..+. +...+|..++.++..- .+...-.+.+.
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~-----------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeG 99 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE-----------GGVELTEKGEELAEEL--GIKKKYDYTCECCEG 99 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec-----------CcEeehhhhHHHHHHh--CCCccccccccCcCC
Confidence 88888988888 5688999999999999999985 6689999998776421 11111111100
Q ss_pred -ccchhhhhhHHHHhhc---CCCChhhhhcCCCccccccCCchHHHHHHHHHHhchhhhHHHHHhhchhhhcCCCeEEEe
Q 021867 128 -PILLSPWLKLSTWFQN---DDPTPFDTLHGKSFWVYAGDEPKINNFFNEAMASDARLATRVVIHKCKDVFEGLNSLVDV 203 (306)
Q Consensus 128 -~~~~~~~~~l~~~l~~---~~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDv 203 (306)
......+..|-+-++. ..|-|-+. +.+.+ -.|+- ..++ ++=.+...--..+.|+-+
T Consensus 100 rgi~l~~f~dll~kf~eiaK~RP~p~~~-yDQgf-----vTpEt---------tv~R-----v~lm~~RGDL~gK~I~vv 159 (354)
T COG1568 100 RGISLQAFKDLLEKFREIAKDRPEPLHQ-YDQGF-----VTPET---------TVSR-----VALMYSRGDLEGKEIFVV 159 (354)
T ss_pred ccccchhHHHHHHHHHHHHhcCCCcchh-ccccc-----ccccc---------eeee-----eeeeccccCcCCCeEEEE
Confidence 0001112222222211 11211110 00000 01110 0000 000011112235678888
Q ss_pred cCCccHHHHHHHHHCCCCeEEEecch-HHHHh----chh-cCCCeEEEeccCCCCCC-----CccEEEehhhhccCCchH
Q 021867 204 GGGIGTVAKAIAKAFPNLECTDFDLP-HVVNG----LES-DLANLKYVGGDMFEAIP-----PADAVLLKWILHDWNDEE 272 (306)
Q Consensus 204 GgG~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~----a~~-~~~rv~~~~~d~~~~~p-----~~D~~~~~~vlh~~~d~~ 272 (306)
| -.-..+++++-..---++.++|+. ..+.- |++ ..++|+....|..+|+| .||+++.-=+= +-+.
T Consensus 160 G-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~a 235 (354)
T COG1568 160 G-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKA 235 (354)
T ss_pred c-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHH
Confidence 8 333444444333222378888983 33333 333 56779999999999988 38987642110 1122
Q ss_pred HHHHHHHHHHhcCC
Q 021867 273 CVKILKKCKEAVTS 286 (306)
Q Consensus 273 ~~~iL~~~~~~L~p 286 (306)
...+|.+=..+|+.
T Consensus 236 lk~FlgRGI~tLkg 249 (354)
T COG1568 236 LKLFLGRGIATLKG 249 (354)
T ss_pred HHHHHhccHHHhcC
Confidence 33445566667764
No 495
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=63.37 E-value=2.7 Score=28.80 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=36.5
Q ss_pred HHhCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 36 VELGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.+-.|+++|...+ +.++..+|...|+.. ...-+-+.|..|...|.+.+..
T Consensus 5 ~ee~Il~~L~~~g-~~~a~~ia~~~~L~~-~kk~VN~~LY~L~k~g~v~k~~ 54 (66)
T PF02295_consen 5 LEEKILDFLKELG-GSTATAIAKALGLSV-PKKEVNRVLYRLEKQGKVCKEG 54 (66)
T ss_dssp HHHHHHHHHHHHT-SSEEEHHHHHHHHTS--HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHhCcch-hHHHHHHHHHHHHHCCCEeeCC
Confidence 3455677777654 677777777666621 3678999999999999999874
No 496
>PRK10736 hypothetical protein; Provisional
Probab=63.12 E-value=11 Score=35.23 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=39.0
Q ss_pred hCcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 38 LGIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
..|++.|.. .|+++++|+.++|+ +...+...|-.|.-.|++.+..
T Consensus 311 ~~v~~~l~~--~~~~iD~L~~~~~l---~~~~v~~~L~~LEl~G~v~~~~ 355 (374)
T PRK10736 311 PELLANVGD--EVTPVDVVAERAGQ---PVPEVVTQLLELELAGWIAAVP 355 (374)
T ss_pred HHHHHhcCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEEcC
Confidence 457777754 68999999999999 6788999999999999999986
No 497
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=63.05 E-value=20 Score=28.77 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=45.9
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------cCCCeEEEeccCCCCCCCccEEEehhhh
Q 021867 199 SLVDVGGGIGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEAIPPADAVLLKWIL 265 (306)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~~p~~D~~~~~~vl 265 (306)
+|.=+|+|.+..+....-.....++++... ++.++..++ ..+++.+ .-|+.+-..++|++++.-.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEecccH
Confidence 366789998876655444444467888877 444444333 1123332 22332223468988875433
Q ss_pred ccCCchHHHHHHHHHHHhcCC
Q 021867 266 HDWNDEECVKILKKCKEAVTS 286 (306)
Q Consensus 266 h~~~d~~~~~iL~~~~~~L~p 286 (306)
.....+++++.+.+++
T Consensus 80 -----~~~~~~~~~l~~~l~~ 95 (157)
T PF01210_consen 80 -----QAHREVLEQLAPYLKK 95 (157)
T ss_dssp -----GGHHHHHHHHTTTSHT
T ss_pred -----HHHHHHHHHHhhccCC
Confidence 3345678999888876
No 498
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=62.95 E-value=9.5 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeecccCCCCCCCCCCceecChhch
Q 021867 48 GKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLKNASK 108 (306)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (306)
+.++.-+|||+.++- +|..++-.|..|.++|+++-.. |-.|.|..|-.+-
T Consensus 23 ~r~IKgeeIA~~l~r---npGTVRNqmq~LkaLgLVegvp--------GPkGGY~PT~kAY 72 (294)
T COG2524 23 KRPIKGEEIAEVLNR---NPGTVRNQMQSLKALGLVEGVP--------GPKGGYKPTSKAY 72 (294)
T ss_pred CCCcchHHHHHHHcc---CcchHHHHHHHHHhcCcccccc--------CCCCCccccHHHH
Confidence 479999999999999 7899999999999999999775 2358899887554
No 499
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=62.73 E-value=7.9 Score=32.02 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCHHHHHHhcCCCCCCcchHHHHHHHHHHcCceeeec
Q 021867 39 GIPDIINKHGKPMTLNELVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (306)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g~l~~~~ 87 (306)
.|++.|.+. |-+|=++||+.+|+ ...-++|+|..|...|++....
T Consensus 22 ~v~~~l~~k-ge~tDeela~~l~i---~~~~vrriL~~L~e~~li~~~k 66 (176)
T COG1675 22 LVVDALLEK-GELTDEELAELLGI---KKNEVRRILYALYEDGLISYRK 66 (176)
T ss_pred HHHHHHHhc-CCcChHHHHHHhCc---cHHHHHHHHHHHHhCCceEEEe
Confidence 356777653 47999999999999 7899999999999999999654
No 500
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=62.51 E-value=34 Score=33.44 Aligned_cols=97 Identities=16% Similarity=0.257 Sum_probs=58.0
Q ss_pred CCCeEEEecCCc-cHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEeccC------------------C-----
Q 021867 196 GLNSLVDVGGGI-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDM------------------F----- 250 (306)
Q Consensus 196 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~------------------~----- 250 (306)
.+.+++=+|+|. |..+..+++.. +.+++++|. +...+.++... .+++.-|. .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lG--a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMG--AEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC--CeEEeccccccccccccceeecCHHHHHHHHH
Confidence 458999999994 56666677665 456888898 66777776521 12211111 1
Q ss_pred --C-CCCCccEEEehhhhccCCchHHHHHHHHHHHhcCCCCCCcEEEEEeeecCC
Q 021867 251 --E-AIPPADAVLLKWILHDWNDEECVKILKKCKEAVTSDDKKGKVIIIDMIREN 302 (306)
Q Consensus 251 --~-~~p~~D~~~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~e~~~~~ 302 (306)
. ...++|+++..-.+.--+.+ .-+.++..+.||| |+. |+|...+.
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKp---Gsv--IVDlA~d~ 287 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKA---GSV--IVDLAAEQ 287 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCC---CCE--EEEeeeCC
Confidence 0 12358999655544332222 3467888899999 766 44544433
Done!