BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021868
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 135/274 (49%), Positives = 177/274 (64%), Gaps = 9/274 (3%)
Query: 28 EICTIPLDTAKVRLQLQKKAVA-GDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLH 86
++ T PLDTAKVRLQ+Q ++ A +Y+G+LGT+ T+ R EG SL+ G+V GL
Sbjct: 16 DLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQ 75
Query: 87 RQCLFGGLRIGLYEPVKTLYV-GKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRL 145
RQ F +RIGLY+ VK Y G + G + ++LAG TTGAL + +A PTD+VKVR
Sbjct: 76 RQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSRLLAGSTTGALAVAVAQPTDVVKVRF 132
Query: 146 QAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQ 205
QA+ + G RRY + AY TI ++EG LW G PNVARNAI+N AEL +YD +K
Sbjct: 133 QAQARAGGG--RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKD 190
Query: 206 TILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRMMGDS--AYKSTLDCFIKTLK 263
T+LK TD++ H S GAGF I SPVDVVK+R M + Y S C + L+
Sbjct: 191 TLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLR 250
Query: 264 NDGPLAFYKGFLPNFGRLGSWNVIMFLTLEQAKK 297
+GP AFYKGF+P+F RLGSWNV+MF+T EQ K+
Sbjct: 251 KEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 33 PLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFG 92
P D KVR Q Q +A G +Y+ + TIAREEG+ LWKG P + R +
Sbjct: 124 PTDVVKVRFQAQARAGGGR-----RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 93 GLRIGLYEPVK-TLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRL--QAEG 149
+ Y+ +K TL D+P + G +IA+P D+VK R A G
Sbjct: 179 CAELVTYDLIKDTLLKANLMTDDLPC--HFTSAFGAGFCTTVIASPVDVVKTRYMNSALG 236
Query: 150 KLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTIL 208
+ Y A + T++++EG A + G P+ R N +Y+Q+K+ ++
Sbjct: 237 Q--------YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 11/187 (5%)
Query: 117 LSKKILAGLTTGALGIMIANPTDLVKVRLQAEGK----LPPGVPRRYSGALNAYSTIVKQ 172
++ K L T + +I P D KVRLQ +G+ + +Y G L T+V+
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 173 EGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVAV 232
EG +L+ G+ + R + + YD VKQ K + + LL+G G +AV
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALAV 119
Query: 233 CIGSPVDVVKSRMM------GDSAYKSTLDCFIKTLKNDGPLAFYKGFLPNFGRLGSWNV 286
+ P DVVK R G Y+ST++ + + +G +KG PN R N
Sbjct: 120 AVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Query: 287 IMFLTLE 293
+T +
Sbjct: 180 AELVTYD 186
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 225 LGAGFVAVCIGS----PVDVVKSRMM------------GDSAYKSTLDCFIKTLKNDGPL 268
LGAG A CI P+D K R+ + Y+ L + ++ +GP
Sbjct: 6 LGAG-TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 269 AFYKGFLPNFGRLGSWNVIMFLTLEQAKKF 298
+ Y G + R S+ + + K+F
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQF 94
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 124/279 (44%), Gaps = 28/279 (10%)
Query: 38 KVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIG 97
+V+L LQ + + A +YKG++ V I +E+G +S W+G + + R L
Sbjct: 30 RVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFA 89
Query: 98 LYEPVKTLYVG---------KDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAE 148
+ K +++G + F G++ +G GA + P D + RL A+
Sbjct: 90 FKDKYKQIFLGGVDRHKQFWRYFAGNLA------SGGAAGATSLCFVYPLDFARTRLAAD 143
Query: 149 -GKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTI 207
GK R ++G N + I K +G L+ G +V I AA YD K +
Sbjct: 144 VGK--GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK-GM 200
Query: 208 LKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVVKSRMM-------GDSAYKSTLDCFIK 260
L P +V+ +++ VA + P D V+ RMM D Y T+DC+ K
Sbjct: 201 LPDPKNVHIIVSWMIAQTVTA-VAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRK 259
Query: 261 TLKNDGPLAFYKGFLPNFGRLGSWNVIMFLTLEQAKKFV 299
K++GP AF+KG N R G + + ++ KKFV
Sbjct: 260 IAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEIKKFV 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,391,760
Number of Sequences: 62578
Number of extensions: 349501
Number of successful extensions: 1016
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 8
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)