Query 021869
Match_columns 306
No_of_seqs 183 out of 1108
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_E Ribosomal protein S5; s 100.0 7E-100 2E-104 717.0 13.6 287 15-306 8-308 (308)
2 3j20_F 30S ribosomal protein S 100.0 1.5E-62 5.1E-67 450.0 7.8 186 112-297 13-218 (236)
3 3u5c_C Guanine nucleotide-bind 100.0 1.1E-60 3.9E-65 441.2 13.7 179 112-290 32-224 (254)
4 2vqe_E 30S ribosomal protein S 100.0 7.6E-59 2.6E-63 405.8 18.3 157 148-305 4-160 (162)
5 3i1m_E 30S ribosomal protein S 100.0 1.8E-59 6.1E-64 411.5 10.8 156 149-305 10-165 (167)
6 3r8n_E 30S ribosomal protein S 100.0 1.5E-58 5.1E-63 399.7 13.8 150 149-299 1-150 (150)
7 2xzm_E Ribosomal protein S5 co 100.0 9.9E-59 3.4E-63 435.3 12.1 179 112-290 24-225 (296)
8 1pkp_A Ribosomal protein S5; 2 100.0 8.3E-55 2.8E-59 376.3 15.0 142 148-290 9-150 (150)
9 3iz6_E 40S ribosomal protein S 100.0 1.2E-59 3.9E-64 438.1 -34.8 178 114-291 43-234 (274)
10 3adl_A RISC-loading complex su 58.7 13 0.00043 28.5 4.6 43 167-214 44-86 (88)
11 2dix_A Interferon-inducible do 51.6 22 0.00076 26.7 4.8 39 168-211 37-75 (84)
12 4hpq_A ATG31, KLTH0C07942P; au 51.6 11 0.00037 28.5 3.0 26 58-94 3-28 (69)
13 1uhz_A Staufen (RNA binding pr 48.1 27 0.00093 26.6 4.9 39 167-210 35-73 (89)
14 3llh_A RISC-loading complex su 47.3 25 0.00084 26.8 4.6 40 168-212 43-82 (90)
15 2khx_A Ribonuclease 3; drosha, 44.8 19 0.00065 27.3 3.5 44 168-215 36-79 (85)
16 1vz0_A PARB, chromosome partit 44.6 81 0.0028 27.8 8.2 67 238-304 67-151 (230)
17 1di2_A XLRBPA, double stranded 44.4 35 0.0012 24.3 4.7 38 168-210 30-67 (69)
18 3adj_A F21M12.9 protein; HYL1, 41.4 45 0.0015 24.3 5.1 40 167-210 33-72 (76)
19 2cpn_A TAR RNA-binding protein 39.6 48 0.0016 25.2 5.1 39 167-210 45-83 (89)
20 1t4n_A Ribonuclease III; DSRBD 38.7 35 0.0012 26.8 4.3 43 168-213 34-76 (94)
21 2b7v_A Double-stranded RNA-spe 34.6 30 0.001 24.9 3.0 40 167-211 28-67 (71)
22 3iuo_A ATP-dependent DNA helic 34.2 28 0.00095 27.9 3.1 31 274-304 19-49 (122)
23 1x49_A Interferon-induced, dou 32.3 73 0.0025 24.6 5.2 41 167-211 42-82 (97)
24 1svd_M Ribulose bisphosphate c 30.7 24 0.00083 28.6 2.2 28 92-119 16-43 (110)
25 2b7t_A Double-stranded RNA-spe 30.4 50 0.0017 23.8 3.7 40 167-211 31-70 (73)
26 1t4o_A Ribonuclease III; RNT1P 28.6 61 0.0021 26.5 4.3 45 167-214 35-79 (117)
27 1rbl_M Ribulose 1,5 bisphospha 27.9 22 0.00074 28.9 1.4 28 92-119 14-41 (109)
28 2nug_A Ribonuclease III, RNAse 27.1 71 0.0024 27.6 4.7 38 168-210 180-217 (221)
29 1wdd_S Ribulose bisphosphate c 25.6 32 0.0011 28.7 2.1 28 92-119 15-42 (128)
30 2pif_A UPF0317 protein pspto_5 25.1 14 0.00048 34.6 -0.2 60 181-241 114-176 (276)
31 4f0h_B Ribulose bisphosphate c 25.0 34 0.0012 28.9 2.2 27 92-118 8-34 (138)
32 1h2i_A RAD52, DNA repair prote 24.1 2.5E+02 0.0085 25.1 7.7 113 88-206 22-146 (209)
33 3zxw_B Ribulose bisphosphate c 24.0 28 0.00095 28.7 1.4 28 92-119 13-40 (118)
34 2l3j_A Double-stranded RNA-spe 23.8 59 0.002 28.8 3.6 48 167-219 185-232 (236)
35 1gk8_I Ribulose bisphosphate c 23.7 37 0.0013 28.8 2.1 28 92-119 15-42 (140)
36 2k75_A Uncharacterized protein 23.5 1.3E+02 0.0043 23.3 5.1 37 149-187 17-53 (106)
37 1bwv_S Rubisco, protein (ribul 22.7 40 0.0014 28.4 2.2 28 92-119 8-35 (138)
38 1whq_A RNA helicase A; double- 21.8 1.1E+02 0.0038 23.7 4.5 43 167-212 33-75 (99)
39 3adg_A F21M12.9 protein; HYL1, 20.7 1.3E+02 0.0043 21.5 4.3 40 167-210 31-71 (73)
40 1ekz_A DSRBDIII, maternal effe 20.7 17 0.00058 26.5 -0.5 36 169-209 37-72 (76)
No 1
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=7.3e-100 Score=716.98 Aligned_cols=287 Identities=67% Similarity=1.011 Sum_probs=157.1
Q ss_pred cccceeeeeeccCCcccccccccccC-------CCC------CcceeeEEeccCCCCCCceeecCCCCCCCCccccCCCC
Q 021869 15 LSSLSLSLSLHSTPRLSFLSTAKLTR-------LPK------LTLSTVLVRASESDKPNGIVFDDFNNPDEDAAVFDPPT 81 (306)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (306)
|||||+ +.++++|+++++|..+.. .+| +.+|++++|++++|+| |+||||+ ||| ++++||||.
T Consensus 8 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~ 82 (308)
T 3bbn_E 8 TPSATS--LTTLHRRIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDID-ITFFEQD-NPD-EEITFDPPE 82 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchh--heeccccccccCCcccccCchhhcCccccccccccccceEEEEeeccccc-ceeecCC-Ccc-cceEecCCC
Confidence 566665 667889999988876522 122 3478999999999999 9999999 899 999999999
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCCCcccccCCCCcccccchhhhhhccCC-CCccccccCCcceeEEEEeee
Q 021869 82 PPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEERVVQVRRV 160 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~rgwsg~t~lG~~V~~~~~k~~~~~~fs-~~ke~~i~d~f~~~VL~i~rV 160 (306)
|||||||||+||++++||||||+||||+|+||||+|++|+||+|++|++|+++.++|+ ++++++++++|+++||+|+||
T Consensus 83 ~~e~~~~~~~~~~~~~~~e~e~~~~~e~l~ergwsg~TklGrlVk~~kik~~~~~~fsl~ike~ei~d~f~ekVv~I~RV 162 (308)
T 3bbn_E 83 KPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRV 162 (308)
T ss_dssp --------------------------------------------------------------------CCEEEEEEEECC
T ss_pred CccccCCCcCcccccccCHHHHHHHHHHhhccCcccccccCccCCCccccchhhhccccccccccccccceeeEEEEeee
Confidence 9999999999999999999999999999999999999999999999999998889999 888888999999999999999
Q ss_pred eeeecCCeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEecccCCcccceeeeeeeceEEEEEeecC
Q 021869 161 TKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAS 240 (306)
Q Consensus 161 ~K~TkgGR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~~~hTIphdv~gk~gstkV~L~PAP 240 (306)
||||++||++||+|||||||+||+||+|+|||+||.+||+||+++|++||++|+++++|||||+|.||||+++|+|+|||
T Consensus 163 ~KvTkgGRr~rF~AlVVVGDgnG~VGlG~GKAkEV~~AIrKAi~~Akknli~V~r~~~hTIph~V~Gk~Gs~~V~L~PAP 242 (308)
T 3bbn_E 163 TKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAA 242 (308)
T ss_dssp EEEETTEEEECCEEEEEEECSSSEEEEEEEECSSHHHHHHHHHHTTTTSCEECCCCSSSBCSSCEEEEETTEEEEEEECC
T ss_pred EEEecCCcEEEEEEEEEEeCCCceEeeeeeecchHHHHHHHHHHHHHhCeEEEecCCCcccceEEEEEEeeEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeechHHHHHHHHhCccceeeeeccCCchhhHHHHHHHHHHccCCHHHHHHHhCCCcccccC
Q 021869 241 PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELWK 306 (306)
Q Consensus 241 ~GtGLva~~vik~IlelAGIkD~~aKv~GStn~lNvaKAtf~AL~k~~S~~eiA~~rG~~vvE~~~ 306 (306)
+|+||+|++++|+||+||||+||++|++||+|++|++||||+||+++++++|||++||++++|+++
T Consensus 243 ~GTGIiAg~~vr~VLelAGIkDv~tKs~GStn~lN~vKATf~AL~k~~s~~eVA~~RGk~v~ei~~ 308 (308)
T 3bbn_E 243 PGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEELWK 308 (308)
T ss_dssp TTCCEECCTTTHHHHTTTTCCBEEEEEEECCCTTTTTTHHHHHHHTCCCHHHHHTTSCCCSCCCCC
T ss_pred CCCceecCcHHHHHHHhcCcceEEEeccCCCCchhHHHHHHHHHHhcCCHHHHHHHcCCCHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 2
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-62 Score=449.96 Aligned_cols=186 Identities=23% Similarity=0.370 Sum_probs=177.8
Q ss_pred CCCcccccCCCCcccccchhhhhh-ccCC-CCccccccCCcc--------eeEEEEeeeeeeecCCeeEEEEEEEEecCC
Q 021869 112 GPAYAGVSVLGNDVYVMDSKAKKT-SAFG-KTKKEKVKDGFE--------ERVVQVRRVTKVVKGGKQLKFRAIVVVGDK 181 (306)
Q Consensus 112 ~rgwsg~t~lG~~V~~~~~k~~~~-~~fs-~~ke~~i~d~f~--------~~VL~i~rV~K~TkgGR~~rf~AlVvVGNg 181 (306)
+.+|.|+|+|||+|++|++|++++ |.|| |++|.+|+|+|. ++||+|+||||||++||++||+|||||||+
T Consensus 13 ~~~w~p~tklG~lVk~~ki~sleei~~~~lpike~eiid~~l~~Lk~~~~e~Vl~I~rV~K~tkgGrr~rF~AlVvVGD~ 92 (236)
T 3j20_F 13 LDEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNR 92 (236)
T ss_dssp TTSCCCSSHHHHHHHTTCSCCHHHHHHHTCCCCCSHHHHHHCCSSSSCCEEEEEEECCCEEEETTEEEECEEEEEEEEET
T ss_pred ccceeccccccceeecCccccHHHHHhcCCCcccHHHHHHHHHhhcccCCcEEEEEeeeEEeecCCcEEEEEEEEEEECC
Confidence 679999999999999999999987 9999 999999998774 999999999999999999999999999999
Q ss_pred CCceeecccchhhHHHHHHHHHHHHHhcceEeccc---------CCcccceeeeeeeceEEEEEeecCCCCceeechHHH
Q 021869 182 KGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMT---------KYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVR 252 (306)
Q Consensus 182 nG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~---------~~hTIphdv~gk~gstkV~L~PAP~GtGLva~~vik 252 (306)
||+||+|+|||+||++||+||+.+|++||++|+++ ++|||||+|+|+||+++|+|+|||+|+||+|++++|
T Consensus 93 nG~VGlG~gKakEV~~AIrkAi~~Ak~nli~V~r~~g~W~~~~g~~hTIp~~V~Gk~Gs~~V~L~PAp~GtGIiag~~~r 172 (236)
T 3j20_F 93 DGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGK 172 (236)
T ss_dssp TTEEEEEEEEESSHHHHHHHHHHHHHHSEEECCCBSSCSSSCCSSCCBCSSCEEEEETTEEEEEECCCSSCCCBSCHHHH
T ss_pred CCcCccccccchhHHHHHHHHHHHHHhCeEEEecccccccccCCCCCceeeEEEEEECCEEEEEEcCCCcCCcccCcHHH
Confidence 99999999999999999999999999999999997 799999999999999999999999999999999999
Q ss_pred HHHHHhCccceeeeeccCC-chhhHHHHHHHHHHccCCHHHHHHHh
Q 021869 253 IVLEMAGVENALGKQLGSN-NALNNARATVVAVQKMKQWREVSRER 297 (306)
Q Consensus 253 ~IlelAGIkD~~aKv~GSt-n~lNvaKAtf~AL~k~~S~~eiA~~r 297 (306)
+||+||||+||++|++||+ |++|++||||+||++++|++++++++
T Consensus 173 ~vLelAGI~Dv~tks~Gst~n~~N~vKATf~AL~k~~s~~t~~~~~ 218 (236)
T 3j20_F 173 KILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNTNRVAISPEMI 218 (236)
T ss_dssp HHHHHHTCCCCEEEEESCCSCHHHHHHHHHHHHHHHHHSCCTTTC-
T ss_pred HHHHhCCcceEEEEcccCCCCHHHHHHHHHHHHHhcccccChHHHH
Confidence 9999999999999999996 79999999999999999887766543
No 3
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Probab=100.00 E-value=1.1e-60 Score=441.20 Aligned_cols=179 Identities=27% Similarity=0.477 Sum_probs=171.2
Q ss_pred CCCcccccCCCCcccccchhhhhh-ccCC-CCccccccC----CcceeEEEEeeeeeeecCCeeEEEEEEEEecCCCCce
Q 021869 112 GPAYAGVSVLGNDVYVMDSKAKKT-SAFG-KTKKEKVKD----GFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQV 185 (306)
Q Consensus 112 ~rgwsg~t~lG~~V~~~~~k~~~~-~~fs-~~ke~~i~d----~f~~~VL~i~rV~K~TkgGR~~rf~AlVvVGNgnG~v 185 (306)
+.+|.|+|+|||+|+++++|++++ |.|| |++|.+|+| +|+++||+|+||||||++||++||+|||||||+||+|
T Consensus 32 ~~~W~P~TklG~lVk~~kiksleei~~~slpikE~eiiD~~l~~Lke~Vl~I~rVqK~tkgGrr~rF~AlVVVGD~nG~V 111 (254)
T 3u5c_C 32 EKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHV 111 (254)
T ss_dssp --CCCCCSHHHHHHHTTCCCCHHHHHHTTCCCCCHHHHHHHCCCCBCCEEEEEEEEEEETTEEEEEEEEEEEEECSSSEE
T ss_pred ccceeecccccchhhcCccccHHHHHHcCCCccchHHHHHHHHhhhhhEEEEeeeEEEecCCcEEEEEEEEEecCCCCce
Confidence 457999999999999999999987 9999 999999998 4568999999999999999999999999999999999
Q ss_pred eecccchhhHHHHHHHHHHHHHhcceEeccc-------CCcccceeeeeeeceEEEEEeecCCCCceeechHHHHHHHHh
Q 021869 186 GVGVAKAKEVIAAVQKSAVDARRNIVTVPMT-------KYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMA 258 (306)
Q Consensus 186 G~GvGKakev~~AIrKA~~~Ak~nLi~V~~~-------~~hTIphdv~gk~gstkV~L~PAP~GtGLva~~vik~IlelA 258 (306)
|+|+|||+||++||+||+++|++||++|+++ ++|||||+|+|+||+++|+|+|||+|+||+|++++|+||+||
T Consensus 112 GlG~gkakEV~~AIrkAi~~Ak~nlipV~rgyWg~~~g~~hTIp~~V~Gk~Gs~~V~L~PAp~GtGIiag~~~r~vLelA 191 (254)
T 3u5c_C 112 GLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLA 191 (254)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTCEECCEECSSSCCSSCCEESSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHT
T ss_pred eecccccchHHHHHHHHHHHHHhCeEEeccccccccCCCCcceeeEEEeeecceEEEEecCCCCcCeecCcHHHHHHHhc
Confidence 9999999999999999999999999999985 899999999999999999999999999999999999999999
Q ss_pred CccceeeeeccCC-chhhHHHHHHHHHHccCCH
Q 021869 259 GVENALGKQLGSN-NALNNARATVVAVQKMKQW 290 (306)
Q Consensus 259 GIkD~~aKv~GSt-n~lNvaKAtf~AL~k~~S~ 290 (306)
||+||++|++||+ |++|++||||+||+++|++
T Consensus 192 GI~Dv~tks~Gst~t~~N~vKATf~AL~ktys~ 224 (254)
T 3u5c_C 192 GVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGF 224 (254)
T ss_dssp TCCCEEEEEESCTTCHHHHHHHHHHHHHGGGGC
T ss_pred CcceEEEEccccCCChHHHHHHHHHHHHhhhcc
Confidence 9999999999997 5789999999999999985
No 4
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=100.00 E-value=7.6e-59 Score=405.83 Aligned_cols=157 Identities=45% Similarity=0.733 Sum_probs=148.8
Q ss_pred CCcceeEEEEeeeeeeecCCeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEecccCCcccceeeee
Q 021869 148 DGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDG 227 (306)
Q Consensus 148 d~f~~~VL~i~rV~K~TkgGR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~~~hTIphdv~g 227 (306)
++|+++||+|+||||||++||++||+|||+|||+||+||||+|||+|+++||+||+++|++||++|++++ |||||+++|
T Consensus 4 ~~l~e~vv~I~rV~K~tkgGr~~~F~alVvvGd~nG~vG~G~gKa~ev~~AIrkA~~~Ak~nli~V~~~~-~TIp~~v~g 82 (162)
T 2vqe_E 4 TDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQN-GTIPHEIEV 82 (162)
T ss_dssp -CCEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSEEECCCST-TSCSSCEEE
T ss_pred cCceeEEEEEEeEEEEeCCCcEEEEEEEEEEeCCCCeEecceEecccHHHHHHHHHHHHHhCcEEEecCC-CcccEEEEE
Confidence 3699999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred eeceEEEEEeecCCCCceeechHHHHHHHHhCccceeeeeccCCchhhHHHHHHHHHHccCCHHHHHHHhCCCccccc
Q 021869 228 DFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELW 305 (306)
Q Consensus 228 k~gstkV~L~PAP~GtGLva~~vik~IlelAGIkD~~aKv~GStn~lNvaKAtf~AL~k~~S~~eiA~~rG~~vvE~~ 305 (306)
+||+++|+|+|||+|+||+|++++|+||++|||+|||+|++||+|++|++||||+||++++|++|+|++||++++|+.
T Consensus 83 k~gs~~V~l~Pap~GtGiiag~~~r~vl~~aGI~Dv~tk~~Gs~n~~N~vkAt~~aL~~~~s~~~vA~~RG~~~~~~~ 160 (162)
T 2vqe_E 83 EFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGEAHAQA 160 (162)
T ss_dssp EETTEEEEEEECCTTSCEESCHHHHHHHHTTTCCSEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHTCC------
T ss_pred EeCcEEEEEEECCCCcceecCcHHHHHHHhcCccceEEEecCCCCcchHHHHHHHHHHhcCCHHHHHHHcCCCHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 5
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E*
Probab=100.00 E-value=1.8e-59 Score=411.55 Aligned_cols=156 Identities=45% Similarity=0.710 Sum_probs=148.9
Q ss_pred CcceeEEEEeeeeeeecCCeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEecccCCcccceeeeee
Q 021869 149 GFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGD 228 (306)
Q Consensus 149 ~f~~~VL~i~rV~K~TkgGR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~~~hTIphdv~gk 228 (306)
+|+++||+|+||||||++||++||+|||+|||+||+||||+||++|+++||+||+++|++||++|++ ++|||||+++|+
T Consensus 10 ~l~e~vv~I~rV~K~tk~Gr~~~F~AlVvvGd~nG~VG~G~gka~Ev~~AI~kAi~~Ak~nli~V~~-~~~Tip~~v~gk 88 (167)
T 3i1m_E 10 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVAL-NNGTLQHPVKGV 88 (167)
T ss_dssp CCCEEEEEEEEEECCBTTBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSEECCCC-BTTBCSSCEEEE
T ss_pred ceeEEEEEEEeeEEEEcCCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHHHHHhCeEEEec-CCCeeeeEeeee
Confidence 5999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred eceEEEEEeecCCCCceeechHHHHHHHHhCccceeeeeccCCchhhHHHHHHHHHHccCCHHHHHHHhCCCccccc
Q 021869 229 FGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEELW 305 (306)
Q Consensus 229 ~gstkV~L~PAP~GtGLva~~vik~IlelAGIkD~~aKv~GStn~lNvaKAtf~AL~k~~S~~eiA~~rG~~vvE~~ 305 (306)
||+++|+|+|||+||||+|++++|+||+||||+|||+|++||+|++|++||||+||++++|++|||++||++++|++
T Consensus 89 ~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~Dv~tk~~Gstn~~N~vkAtf~aL~~~~s~~~vA~~RG~~v~e~~ 165 (167)
T 3i1m_E 89 HTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEIL 165 (167)
T ss_dssp ETTEEEEEECCCCSSSCBCCSSSSSHHHHHTCCSCEEEEEECCCHHHHHHHTHHHHHSCCCSTTTTTTTTC------
T ss_pred eccEEEEEEcCCCccceecCcHHHHHHHhCCcceEEEEeccCCChhHHHHHHHHHHHhcCCHHHHHHHhCCcHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 3j18_E* 2wwl_E 3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E 4gd1_E 4gd2_E 2qal_E* 1p6g_E 1p87_E ...
Probab=100.00 E-value=1.5e-58 Score=399.65 Aligned_cols=150 Identities=45% Similarity=0.714 Sum_probs=148.2
Q ss_pred CcceeEEEEeeeeeeecCCeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEecccCCcccceeeeee
Q 021869 149 GFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGD 228 (306)
Q Consensus 149 ~f~~~VL~i~rV~K~TkgGR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~~~hTIphdv~gk 228 (306)
+|+|+||+|+||||||++||++||+|||+|||+||+||||+||++|+++||+||+++|++||++|++ ++|||||+++|+
T Consensus 1 ~l~e~vv~i~rV~K~tk~Gr~~~F~alVvvGd~nG~vG~G~gka~ev~~Ai~kA~~~Ak~nli~V~~-~~~Tip~~v~gk 79 (150)
T 3r8n_E 1 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVAL-NNGTLQHPVKGV 79 (150)
T ss_dssp CCCEEEEEEEECCCCCSSSCCCCEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSCCCCCC-SSSSCSSCEEEE
T ss_pred CceEEEEEEeeeEEEecCCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHHHHHhCeEEEec-CCCeeeeEEeeE
Confidence 5889999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred eceEEEEEeecCCCCceeechHHHHHHHHhCccceeeeeccCCchhhHHHHHHHHHHccCCHHHHHHHhCC
Q 021869 229 FGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 299 (306)
Q Consensus 229 ~gstkV~L~PAP~GtGLva~~vik~IlelAGIkD~~aKv~GStn~lNvaKAtf~AL~k~~S~~eiA~~rG~ 299 (306)
||+++|+|+|||+||||+|++++|+||+||||+|||+|++||+|++|++||||+||++++|++|||++||+
T Consensus 80 ~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~D~~tk~~Gstn~~N~vkAt~~aL~~~~s~~~iA~~rGk 150 (150)
T 3r8n_E 80 HTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK 150 (150)
T ss_dssp ETTEEEEEECCCCSSCCBSCTTTHHHHHHTCCSSCEEEEEECCCHHHHHHHHHHHHHHSCCSSHHHHHSCC
T ss_pred EccEEEEEEcCCCcCceecCcHHHHHHHhCCcceEEEEeccCCChhhHHHHHHHHHHccCCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 7
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E
Probab=100.00 E-value=9.9e-59 Score=435.35 Aligned_cols=179 Identities=28% Similarity=0.424 Sum_probs=171.2
Q ss_pred CCCcccccCCCCcccccchhhhhh-ccCC-CCccccccCC-------------cceeEEEEeeeeeeecCCeeEEEEEEE
Q 021869 112 GPAYAGVSVLGNDVYVMDSKAKKT-SAFG-KTKKEKVKDG-------------FEERVVQVRRVTKVVKGGKQLKFRAIV 176 (306)
Q Consensus 112 ~rgwsg~t~lG~~V~~~~~k~~~~-~~fs-~~ke~~i~d~-------------f~~~VL~i~rV~K~TkgGR~~rf~AlV 176 (306)
+.+|.++|+|||+|++++++++++ |.|+ |++|.+|+|. |+++||+|+||||||++||++||+|||
T Consensus 24 ~~~W~P~TklGrlVk~gkI~sleei~~~slpIkE~eIiD~ll~~~~~~~~~~~L~ekVv~I~rVqKvTkgGRr~rF~AlV 103 (296)
T 2xzm_E 24 KNDWQPQTKLGRLVKYGKISSLDEIFKYSIPIKEPEIIDHFYPKNKDVQAEHKLMEEVLQITPVQKQTQAGQRTRFKGFV 103 (296)
T ss_dssp CCCCCCCSSHHHHHHTTCSCCHHHHHHTTCCCCCSHHHHHHSCTTCCSCCTTCCEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CccccccccccccccCCccCCHHHHHhcCCCcCchhhhHHHhccCcccchhhhheeEEEEEEeEEEEecCCcEEEEEEEE
Confidence 568999999999999999999988 9999 9999999885 678999999999999999999999999
Q ss_pred EecCCCCceeecccchhhHHHHHHHHHHHHHhcceEeccc-------CCcccceeeeeeeceEEEEEeecCCCCceeech
Q 021869 177 VVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMT-------KYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGG 249 (306)
Q Consensus 177 vVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~-------~~hTIphdv~gk~gstkV~L~PAP~GtGLva~~ 249 (306)
||||+||+||+|+|||+||++||+||+++|++||++|+++ ++|||||+|+|+||+++|+|+|||+|+||+|++
T Consensus 104 VVGD~nG~VGlG~GKAkEV~~AIrKAi~~Ak~nli~V~rg~wen~~g~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiAg~ 183 (296)
T 2xzm_E 104 VVGDSNGHIGLGWKVAKEVQGAIKGAITHAKLNMVPVRKGYWGNKIANAHTIPQKITGKSGSVRIRLVPAPRGTGIVAAP 183 (296)
T ss_dssp EEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEECCCBCSSSCCSSCCBCSSCEEEEETTEEEEEECCCSSCCCBSCH
T ss_pred EEeCCCccCccceeechHHHHHHHHHHHHHHhCcEEEecccccccCCCCCeeeEEEEEEECcEEEEEEECCCCcceecCc
Confidence 9999999999999999999999999999999999999993 369999999999999999999999999999999
Q ss_pred HHHHHHHHhCccceeeeecc-CCchhhHHHHHHHHHHccCCH
Q 021869 250 AVRIVLEMAGVENALGKQLG-SNNALNNARATVVAVQKMKQW 290 (306)
Q Consensus 250 vik~IlelAGIkD~~aKv~G-Stn~lNvaKAtf~AL~k~~S~ 290 (306)
++|+||+||||+||++|++| |+|++|++||||+||++++++
T Consensus 184 ~~r~VLelAGI~Dv~tKs~G~S~n~~N~vKATf~AL~k~~s~ 225 (296)
T 2xzm_E 184 IPKKVLQFAGVQDIYTSSQGCTRTRGNFLKATYYALANTYRY 225 (296)
T ss_dssp HHHHHHHTTTCCCCEEEEESCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCeEEEEcccCCCCccchhHHHHHHHHHHhcc
Confidence 99999999999999999999 678999999999999997653
No 8
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=100.00 E-value=8.3e-55 Score=376.27 Aligned_cols=142 Identities=51% Similarity=0.839 Sum_probs=138.6
Q ss_pred CCcceeEEEEeeeeeeecCCeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEecccCCcccceeeee
Q 021869 148 DGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDG 227 (306)
Q Consensus 148 d~f~~~VL~i~rV~K~TkgGR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~~~hTIphdv~g 227 (306)
++|+++||+|+||||||++||++||+|||+|||+||+||||+|||+|+++||+||+++|++||++|++++ |||||+++|
T Consensus 9 ~~l~e~vv~i~rV~K~tk~Gr~~~F~alVvVGd~nG~vG~G~gka~ev~~Ai~kA~~~Ak~nl~~V~~~~-~Tip~~v~g 87 (150)
T 1pkp_A 9 LELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIVG-TTIPHEVIG 87 (150)
T ss_dssp SCCEEEEEEEECSSSBCSSCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEECCCBT-TBCSSCEEE
T ss_pred CCceEEEEEEEeEEEEeCCCcEEEEEEEEEEeCCCCeEeeeEEecchHHHHHHHHHHHHHHCCeEEccCC-ceeeEEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred eeceEEEEEeecCCCCceeechHHHHHHHHhCccceeeeeccCCchhhHHHHHHHHHHccCCH
Q 021869 228 DFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQW 290 (306)
Q Consensus 228 k~gstkV~L~PAP~GtGLva~~vik~IlelAGIkD~~aKv~GStn~lNvaKAtf~AL~k~~S~ 290 (306)
+||+++|+|+|||+|+||+|++++|+||++|||+|||+|++||+|++|++||||+||++++|+
T Consensus 88 k~gs~~V~l~Pap~GtGiia~~~~r~vl~~aGI~Dv~tk~~Gs~n~~N~vkAt~~aL~~~~s~ 150 (150)
T 1pkp_A 88 HFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLKRA 150 (150)
T ss_dssp EETTEEEEEEECCTTCCEESCHHHHHHHHHHTCCSEEEEECSCCSHHHHHHHHHHHHHHCC--
T ss_pred EECCEEEEEEECCCCCccccCcHHHHHHHhcCcceEEEEecCCCChhHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 9
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e
Probab=100.00 E-value=1.2e-59 Score=438.11 Aligned_cols=178 Identities=28% Similarity=0.424 Sum_probs=171.7
Q ss_pred CcccccCCCCcccccchhhhhh-ccCC-CCccccccCCcc----eeEEEEeeeeeeecCCeeEEEEEEEEecCCCCceee
Q 021869 114 AYAGVSVLGNDVYVMDSKAKKT-SAFG-KTKKEKVKDGFE----ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGV 187 (306)
Q Consensus 114 gwsg~t~lG~~V~~~~~k~~~~-~~fs-~~ke~~i~d~f~----~~VL~i~rV~K~TkgGR~~rf~AlVvVGNgnG~vG~ 187 (306)
+|.++|+|||+|++|++|++++ |.|| |++|.+|+|+|. ++||+|+||||||++||++||+|||||||+||+||+
T Consensus 43 eW~P~TkLG~lVk~~kiksleei~~~slpIkE~eIiD~~l~~Lke~Vl~I~rVqK~tkgGrr~rF~AlVVVGD~nG~VGl 122 (274)
T 3iz6_E 43 KWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGL 122 (274)
T ss_dssp HHHHHHHHTCCCSSCTTHHHHHHHTTHHHHHHHTCCSSSSHHHHHHHHCCSHHHHHHTTTCSSSCSSCCSHHHHCCCCEE
T ss_pred ceeecccccceeccCccccHHHHHHcCCCccchHHHHHHHHhhhhcEEEEeeeEeEecCCcEEEEEEEEEecCCCCceec
Confidence 5999999999999999999987 9999 999999999774 899999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHhcceEeccc-------CCcccceeeeeeeceEEEEEeecCCCCceeechHHHHHHHHhCc
Q 021869 188 GVAKAKEVIAAVQKSAVDARRNIVTVPMT-------KYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGV 260 (306)
Q Consensus 188 GvGKakev~~AIrKA~~~Ak~nLi~V~~~-------~~hTIphdv~gk~gstkV~L~PAP~GtGLva~~vik~IlelAGI 260 (306)
|+|||+||++||+||+++|++||++|+++ ++|||||+|+|+||+++|+|+|||+|+||+|++++|+||+||||
T Consensus 123 G~gKakEV~~AIrkAi~~AK~nlipV~rgyWg~~~g~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiag~~~r~vLelAGI 202 (274)
T 3iz6_E 123 GVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 202 (274)
T ss_dssp EEEEECCEEECSSCEEECEEEEEEECSSSBCCCCEEESSHHHHHHHHHHHHHSSCBCCCBCSSSCBSSCEECCCSSCEEE
T ss_pred cccccchHHHHHHHHHHHHHhCcEEeccccccccCCCCcccceEEEEEEcCEEEEEeeCCCCcCeecCcHHHHHHhhcCc
Confidence 99999999999999999999999999995 89999999999999999999999999999999999999999999
Q ss_pred cceeeeeccCC-chhhHHHHHHHHHHccCCHH
Q 021869 261 ENALGKQLGSN-NALNNARATVVAVQKMKQWR 291 (306)
Q Consensus 261 kD~~aKv~GSt-n~lNvaKAtf~AL~k~~S~~ 291 (306)
+|||+|++||+ |++|++||||+||+++|++.
T Consensus 203 ~Dv~tks~Gst~~~~N~vKATf~AL~ktys~l 234 (274)
T 3iz6_E 203 EDVFTSSRGSTKTLGNFVKATFDCLMKTYGFL 234 (274)
T ss_dssp EESSSCCCSHHHHHHHHHTCSSCEEEEESCCC
T ss_pred ceEEEEccccCCChhhhHHHHHHHHHhhhccc
Confidence 99999999997 57899999999999999853
No 10
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=58.67 E-value=13 Score=28.52 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=29.6
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEec
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVP 214 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~ 214 (306)
.....|.+-|.|++ .+|.|.|+++ ..|-+.|-..|...|..+|
T Consensus 44 ~H~~~F~~~v~v~g---~~~~G~G~SK--K~Aeq~AA~~AL~~L~~~p 86 (88)
T 3adl_A 44 AHRKEFTMTCRVER---FIEIGSGTSK--KLAKRNAAAKMLLRVHTVP 86 (88)
T ss_dssp TTSCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHHHC--
T ss_pred CCCCeEEEEEEECC---EEEEEeeCCH--HHHHHHHHHHHHHHHHccC
Confidence 34567889899976 2666666655 6788888888887775443
No 11
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=51.64 E-value=22 Score=26.69 Aligned_cols=39 Identities=26% Similarity=0.207 Sum_probs=28.3
Q ss_pred eeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcce
Q 021869 168 KQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIV 211 (306)
Q Consensus 168 R~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi 211 (306)
....|.+-|.|++ ..|.|.|+++ ..|-+.|-..|...|.
T Consensus 37 h~~~F~~~v~v~~---~~~~G~G~SK--K~Aeq~AA~~aL~~L~ 75 (84)
T 2dix_A 37 HVPTFTFRVTVGD---ITCTGEGTSK--KLAKHRAAEAAINILK 75 (84)
T ss_dssp SSCEEEEEEEETT---EEEEECSSCT--THHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC---EEEEeeeCCH--HHHHHHHHHHHHHHHh
Confidence 4567888888864 7788887776 4677777777776664
No 12
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=51.64 E-value=11 Score=28.45 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=17.5
Q ss_pred CCCceeecCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 021869 58 KPNGIVFDDFNNPDEDAAVFDPPTPPEDYTPPPSFDE 94 (306)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (306)
..||+.|=.+ |- .-|+|||.||.|+=
T Consensus 3 ~~NttVyVRl--Pg---------~Rp~gFVDPPp~~W 28 (69)
T 4hpq_A 3 SENTIVYVRV--AG---------RARNGFVDPLKFYW 28 (69)
T ss_dssp SSSCEEEEEC--SS---------CCCSCCCCCCCCCC
T ss_pred CCCeEEEEEe--cC---------CCCCCCCCCCCCcc
Confidence 4567776655 22 23589999999864
No 13
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=48.09 E-value=27 Score=26.60 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=27.4
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcc
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNI 210 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nL 210 (306)
.....|.+-|.|++ ..|.|.|+++ ..|-+.|-..|...|
T Consensus 35 ~H~~~F~~~v~v~g---~~~~G~G~SK--K~Aeq~AA~~AL~~L 73 (89)
T 1uhz_A 35 PRRREFVMQVKVGN---EVATGTGPNK--KIAKKNAAEAMLLQL 73 (89)
T ss_dssp STTCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECC---EEEEEeeCCH--HHHHHHHHHHHHHHH
Confidence 34567888888875 3566666555 678888888887766
No 14
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=47.32 E-value=25 Score=26.76 Aligned_cols=40 Identities=33% Similarity=0.306 Sum_probs=27.1
Q ss_pred eeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceE
Q 021869 168 KQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVT 212 (306)
Q Consensus 168 R~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~ 212 (306)
....|.+-|.|++ ..|.|.|+++ ..|-+.|-..|...|..
T Consensus 43 H~~~F~~~v~v~g---~~~~G~G~SK--K~Aeq~AA~~aL~~L~~ 82 (90)
T 3llh_A 43 HQPNFTFRVTVGD---TSCTGQGPSK--KAAKHKAAEVALKHLKG 82 (90)
T ss_dssp --CCEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHHC-
T ss_pred CCCcEEEEEEECC---EEEEEEeCCH--HHHHHHHHHHHHHHHHh
Confidence 4456888888874 4566666665 67888888888777643
No 15
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=44.80 E-value=19 Score=27.27 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=30.5
Q ss_pred eeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEecc
Q 021869 168 KQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPM 215 (306)
Q Consensus 168 R~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~ 215 (306)
....|.+-|.|++ -.+|.|.|+++ ..|-+.|-..|...|....+
T Consensus 36 H~~~F~v~V~v~g--~~~~~G~G~SK--K~AEq~AA~~AL~~L~~~~~ 79 (85)
T 2khx_A 36 HARTYTVAVYFKG--ERIGCGKGPSI--QQAEMGAAMDALEKYNFPQM 79 (85)
T ss_dssp SCCCEEEEEEETT--EECCCEEESSH--HHHHHHHHHHHHTTCCSSCC
T ss_pred CCCcEEEEEEECC--EEEEEEeeCCH--HHHHHHHHHHHHHHHhHhhh
Confidence 3456888888876 24556666554 78888888888888755443
No 16
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=44.60 E-value=81 Score=27.78 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=47.1
Q ss_pred ecCCCCceeechHHHHHHHHhCccceeeeeccCC------------------chhhHHHHHHHHHHccCCHHHHHHHhCC
Q 021869 238 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSN------------------NALNNARATVVAVQKMKQWREVSRERGI 299 (306)
Q Consensus 238 PAP~GtGLva~~vik~IlelAGIkD~~aKv~GSt------------------n~lNvaKAtf~AL~k~~S~~eiA~~rG~ 299 (306)
|.+-++-|++|..=...|.++|++.+-+-++..+ +++-.++|.-..+....|.++||+..|+
T Consensus 67 ~~~g~y~Ii~G~rR~~Aa~~lg~~~Ip~iv~~~~d~ea~~~~l~eN~~R~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~ 146 (230)
T 1vz0_A 67 PQGDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGK 146 (230)
T ss_dssp EETTEEEEEECHHHHHHHHHHTCSEEEEEECCCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred EeCCEEEEEeCHHHHHHHHHcCCceeeEEEEeCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCc
Confidence 4343577899887778889999998888775321 2334456665555567899999999998
Q ss_pred Ccccc
Q 021869 300 PMEEL 304 (306)
Q Consensus 300 ~vvE~ 304 (306)
+...+
T Consensus 147 s~~~V 151 (230)
T 1vz0_A 147 ARSTV 151 (230)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 75443
No 17
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=44.38 E-value=35 Score=24.29 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=25.9
Q ss_pred eeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcc
Q 021869 168 KQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNI 210 (306)
Q Consensus 168 R~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nL 210 (306)
....|.+-|.|++ ..|.|.|+++ ..|-+.|-..|...|
T Consensus 30 h~~~F~~~v~v~~---~~~~G~G~sK--K~Aeq~AA~~al~~L 67 (69)
T 1di2_A 30 HKREFTITCRVET---FVETGSGTSK--QVAKRVAAEKLLTKF 67 (69)
T ss_dssp GGCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC---EEEEeecCCH--HHHHHHHHHHHHHHH
Confidence 4567888888875 2666666555 567777777776544
No 18
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=41.39 E-value=45 Score=24.30 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=26.6
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcc
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNI 210 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nL 210 (306)
.....|.+-|.|++. .+|-|.|++ -..|-+.|-..|...|
T Consensus 33 ~h~~~F~~~v~v~g~--~~~~G~G~s--KK~Aeq~AA~~al~~L 72 (76)
T 3adj_A 33 GRVTQFTCTVEIGGI--KYTGAATRT--KKDAEISAGRTALLAI 72 (76)
T ss_dssp SSCEEEEEEEEETTE--EEECCCBSS--HHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEECCE--EEEEeccCC--HHHHHHHHHHHHHHHH
Confidence 455679999999752 355666555 4567777777776554
No 19
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=39.59 E-value=48 Score=25.21 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=27.0
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcc
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNI 210 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nL 210 (306)
.....|.+-|.|++ ..|.|.|++ -..|-+.|-..|...|
T Consensus 45 ~h~~~F~~~v~i~g---~~~~G~G~S--KK~Aeq~AA~~AL~~L 83 (89)
T 2cpn_A 45 AHRKEFTMTCRVER---FIEIGSGTS--KKLAKRNAAAKMLLRV 83 (89)
T ss_dssp SSSCEEEEEEEETT---EEEEEEESS--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECC---EEEEeeeCC--HHHHHHHHHHHHHHHH
Confidence 34567888898875 256665555 4677788877777665
No 20
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=38.65 E-value=35 Score=26.76 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=29.4
Q ss_pred eeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEe
Q 021869 168 KQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTV 213 (306)
Q Consensus 168 R~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V 213 (306)
....|.+-|.|+| +...|.|.|+++ ..|=+.|-..|..+|--+
T Consensus 34 H~k~F~v~v~i~~-~~~~g~G~G~SK--K~AEQ~AA~~AL~~l~~l 76 (94)
T 1t4n_A 34 VDPNSIVECRVGD-GTVLGTGVGRNI--KIAGIRAAENALRDKKML 76 (94)
T ss_dssp SCCSEEEEEECSS-SCEEEEEEESSH--HHHHHHHHHHHHHCHHHH
T ss_pred CCCeEEEEEEECC-EEEEEEEEeCCH--HHHHHHHHHHHHHHHHHH
Confidence 4567888888876 226777777766 467777777777665444
No 21
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=34.57 E-value=30 Score=24.88 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=26.6
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcce
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIV 211 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi 211 (306)
.....|.+-|.|++. .+-|.|+++ ..|-+.|-..|...|.
T Consensus 28 ~h~~~F~~~v~v~~~---~~~G~G~SK--K~Aeq~AA~~al~~L~ 67 (71)
T 2b7v_A 28 SHAKSFVMSVVVDGQ---FFEGSGRNK--KLAKARAAQSALATVF 67 (71)
T ss_dssp TTTCCEEEEEECSSC---EEEEEESSH--HHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEECCE---EEEEeeCCH--HHHHHHHHHHHHHHHH
Confidence 345678888999765 334555554 5677777777776553
No 22
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=34.19 E-value=28 Score=27.88 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHhCCCcccc
Q 021869 274 LNNARATVVAVQKMKQWREVSRERGIPMEEL 304 (306)
Q Consensus 274 lNvaKAtf~AL~k~~S~~eiA~~rG~~vvE~ 304 (306)
-+....|++.+.+..+.++||..||++...+
T Consensus 19 ~~t~~~t~~l~~~G~sleeIA~~R~L~~~TI 49 (122)
T 3iuo_A 19 SKMKVSIVQQIDRKVALDDIAVSHGLDFPEL 49 (122)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTCCHHHH
T ss_pred CccHHHHHHHHHcCCCHHHHHHHcCCCHHHH
Confidence 3556789999999999999999999987665
No 23
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=32.25 E-value=73 Score=24.56 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=28.1
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcce
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIV 211 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi 211 (306)
.....|.+-|.|++. .+|.|.|+++ ..|-+.|-..|...|.
T Consensus 42 ~H~~~F~v~v~i~g~--~~~~G~G~SK--K~Aeq~AA~~AL~~L~ 82 (97)
T 1x49_A 42 PHDRRFTFQVLIDEK--EFPEAKGRSK--QEARNAAAKLAVDILD 82 (97)
T ss_dssp SSSCEEEEEEEESSC--CCCCEEESSH--HHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEEECCE--EEEEEeeCCH--HHHHHHHHHHHHHHHH
Confidence 455678888888763 3455666554 6788888888877663
No 24
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=30.69 E-value=24 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCccccc
Q 021869 92 FDELPMETEDEIAAAYEELYGPAYAGVS 119 (306)
Q Consensus 92 ~~~~~~~~~~~~~~~~e~~~~rgwsg~t 119 (306)
|.-+|+-|+|||..+.+-++..||.+.-
T Consensus 16 fSyLP~lt~eqI~kQV~Yll~qGw~p~i 43 (110)
T 1svd_M 16 FSYLPPMNAERIRAQIKYAIAQGWSPGI 43 (110)
T ss_dssp TTTSCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHHHHCCCeeEE
Confidence 5567889999999999999999998643
No 25
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=30.38 E-value=50 Score=23.79 Aligned_cols=40 Identities=23% Similarity=0.062 Sum_probs=26.4
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcce
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIV 211 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi 211 (306)
.....|.+-|.|++.. +.|.|++ -..|-+.|-..|...|.
T Consensus 31 ~h~~~F~~~v~v~g~~---~~G~G~S--KK~Aeq~AA~~al~~L~ 70 (73)
T 2b7t_A 31 VHAPLFVMSVEVNGQV---FEGSGPT--KKKAKLHAAEKALRSFV 70 (73)
T ss_dssp SSSCEEEEEEESSSSE---EEEEESS--HHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCEE---EEeecCC--HHHHHHHHHHHHHHHHh
Confidence 4556899999998654 2444444 45677777777766654
No 26
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=28.60 E-value=61 Score=26.50 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=30.1
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEec
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVP 214 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~ 214 (306)
.....|.+-|.|++ ...+|.|.|+++ ..|=+.|...|..++--++
T Consensus 35 dH~k~F~v~V~i~g-~~~~g~G~G~SK--K~AEQ~AA~~AL~~l~~l~ 79 (117)
T 1t4o_A 35 AVDPNSIVECRVGD-GTVLGTGVGRNI--KIAGIRAAENALRDKKMLD 79 (117)
T ss_dssp SSCCCEEEEEECTT-CCEEEEEEESSH--HHHHHHHHHHHHHCHHHHH
T ss_pred CCCCeEEEEEEECC-EEEEEEEEeCCH--HHHHHHHHHHHHHHHHHHH
Confidence 44567889899976 226777777665 5677777777776654443
No 27
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=27.95 E-value=22 Score=28.90 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.0
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCccccc
Q 021869 92 FDELPMETEDEIAAAYEELYGPAYAGVS 119 (306)
Q Consensus 92 ~~~~~~~~~~~~~~~~e~~~~rgwsg~t 119 (306)
|.-+|+-|+|||+.+.+-++..||.+.-
T Consensus 14 fSyLP~lt~eqI~kQI~Yll~qGw~p~l 41 (109)
T 1rbl_M 14 FSYLPPLSDRQIAAQIEYMIEQGFHPLI 41 (109)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 5567889999999999999999998643
No 28
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=27.09 E-value=71 Score=27.55 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=27.0
Q ss_pred eeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcc
Q 021869 168 KQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNI 210 (306)
Q Consensus 168 R~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nL 210 (306)
....|.+-|.|++. +|.|.|++ -..|-+.|...|...|
T Consensus 180 h~~~F~v~v~v~~~---~~~G~G~s--kK~Ae~~AA~~AL~~L 217 (221)
T 2nug_A 180 HKKKFIVEAKIKEY---RTLGEGKS--KKEAEQRAAEELIKLL 217 (221)
T ss_dssp GGCEEEEEEEETTE---EEEEEESS--HHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCE---EEEEecCC--HHHHHHHHHHHHHHHh
Confidence 34578888888763 56665555 4678888888887765
No 29
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=25.64 E-value=32 Score=28.67 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.6
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCccccc
Q 021869 92 FDELPMETEDEIAAAYEELYGPAYAGVS 119 (306)
Q Consensus 92 ~~~~~~~~~~~~~~~~e~~~~rgwsg~t 119 (306)
|.-+|+-|+|||+.|.+-++..||.+..
T Consensus 15 fSyLP~lt~eqI~kQI~Yll~qGw~p~l 42 (128)
T 1wdd_S 15 LSYLPPLTVEDLLKQIEYLLRSKWVPCL 42 (128)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHHHHCCCeeeE
Confidence 5668899999999999999999998654
No 30
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=25.11 E-value=14 Score=34.55 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=39.6
Q ss_pred CCCceeecccchhhHHHHHHHHHHHHHh--cceEecccCCcccceeeeee-eceEEEEEeecCC
Q 021869 181 KKGQVGVGVAKAKEVIAAVQKSAVDARR--NIVTVPMTKYLTFPHRSDGD-FGAAKVMLRPASP 241 (306)
Q Consensus 181 gnG~vG~GvGKakev~~AIrKA~~~Ak~--nLi~V~~~~~hTIphdv~gk-~gstkV~L~PAP~ 241 (306)
.+.+|+|-+|||=....|+.+|-.-.+. .=.-|++|+ -+|++.--|. +|..-|.|+|-|+
T Consensus 114 ~dD~V~FliGCSFSFE~AL~~aGip~Rhie~g~nVpMYr-Tni~c~paG~F~g~mVVSMRPip~ 176 (276)
T 2pif_A 114 HDDMVAFLIGCSFTFETPLQEAGIEVRHITDGCNVPMYR-TNRACRPAGRLHGEMVVSMRPIPA 176 (276)
T ss_dssp CSSEEEEEECCSCCSHHHHHHHTCCCHHHHTTCCCCEEE-EEEECCCBTTBCCEEEEEEEEEEG
T ss_pred cCceEEEeccccccHHHHHHHCCCCcccccCCCccccEe-cccccccccCcCCCeEEEeecCCH
Confidence 6789999999999999998877532111 011123332 3566666665 4677888988875
No 31
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=24.98 E-value=34 Score=28.89 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.7
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCcccc
Q 021869 92 FDELPMETEDEIAAAYEELYGPAYAGV 118 (306)
Q Consensus 92 ~~~~~~~~~~~~~~~~e~~~~rgwsg~ 118 (306)
|.-+|+-|+|||..+.+-++..||...
T Consensus 8 fSyLP~ltd~qI~kQI~YlL~qGw~~~ 34 (138)
T 4f0h_B 8 FSFLPDLTDEQIKKQIDYMISKKLAIG 34 (138)
T ss_dssp TTTSCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred cccCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 556789999999999999999999854
No 32
>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A
Probab=24.08 E-value=2.5e+02 Score=25.09 Aligned_cols=113 Identities=22% Similarity=0.266 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhc---CCCcccccC--CCCcccccch-hhhhhccCCCCccccccCCcceeEEEEeeee
Q 021869 88 PPPSFDELPMETEDEIAAAYEELY---GPAYAGVSV--LGNDVYVMDS-KAKKTSAFGKTKKEKVKDGFEERVVQVRRVT 161 (306)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~e~~~---~rgwsg~t~--lG~~V~~~~~-k~~~~~~fs~~ke~~i~d~f~~~VL~i~rV~ 161 (306)
+.+.|... .=|+||.......|. ++.+..... .|..|..... +.... .++---+++|..+|+.+..-.
T Consensus 22 s~~~fg~~-~ft~ee~~~iq~~L~~~lgpe~is~R~g~gg~kv~YIeg~kvI~l-----ANeiFGFNGWSs~I~~~~vd~ 95 (209)
T 1h2i_A 22 SVLCFGQC-QYTAEEYQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINL-----ANEMFGYNGWAHSITQQNVDF 95 (209)
T ss_dssp --CCTTCC-CCCHHHHHHHHHHHHCCBCTTTEEEEECTTSCEEEEECHHHHHHH-----HHHHHCTTTEEEEEEEEEEEE
T ss_pred CcccccCc-cCCHHHHHHHHHHHhcccCchhheeccCCCCceEEEeeHHHHHHH-----HHhccCCCCCeeEEEEeecee
Confidence 44556333 238888888877774 344443332 2333322211 11111 111112356677777665322
Q ss_pred eeecCCeeE-EEEEEEEec--CCCC--ceeecccch-hhHHHHHHHHHHHH
Q 021869 162 KVVKGGKQL-KFRAIVVVG--DKKG--QVGVGVAKA-KEVIAAVQKSAVDA 206 (306)
Q Consensus 162 K~TkgGR~~-rf~AlVvVG--NgnG--~vG~GvGKa-kev~~AIrKA~~~A 206 (306)
--+..|+.. .+.|+|=|= ||.- -+|+|.+.. +.-..|+.+|+..|
T Consensus 96 ~d~~~gk~~v~~~aiVRVtLkDGt~~EdiG~G~~~n~~~kg~A~ekAKKeA 146 (209)
T 1h2i_A 96 VDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEA 146 (209)
T ss_dssp EEESSSSEEEEEEEEEEEEETTSCEEEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EeccCCeEEEEEEEEEEEEECCCCEecceeeEEEecCchHHHHHHHHHHHH
Confidence 112344432 234443332 4332 477775552 33344444444433
No 33
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=24.02 E-value=28 Score=28.67 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=23.5
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCccccc
Q 021869 92 FDELPMETEDEIAAAYEELYGPAYAGVS 119 (306)
Q Consensus 92 ~~~~~~~~~~~~~~~~e~~~~rgwsg~t 119 (306)
|.-+|+-|.|+|++|.+-++..||....
T Consensus 13 fSyLP~Lt~eqI~kQV~yll~qGw~~~l 40 (118)
T 3zxw_B 13 FSYLPPLSDAQIARQIQYAIDQGYHPCV 40 (118)
T ss_dssp -CCSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHHHhCCCeeEE
Confidence 5567889999999999999999998654
No 34
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=23.81 E-value=59 Score=28.81 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=32.1
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceEecccCCc
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYL 219 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~V~~~~~h 219 (306)
.....|.+-|.|++. ++.|.|+++ ..|-+.|-..|...|...+..+.|
T Consensus 185 ~h~~~F~~~v~v~~~---~~~G~G~sK--K~Aeq~AA~~al~~L~~~~~~~~~ 232 (236)
T 2l3j_A 185 SHAKSFVMSVVVDGQ---FFEGSGRNK--KLAKARAAQSALATVFNLHLLEHH 232 (236)
T ss_dssp SSSCCEEEEEEETTE---EEEEEESSH--HHHHHHHHHHHHHHHTTCCSSSCS
T ss_pred CCCCeEEEEEEECCE---EEEeeeCCH--HHHHHHHHHHHHHHHccccchhhc
Confidence 344568888899864 445555554 677788888888777665555443
No 35
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=23.75 E-value=37 Score=28.78 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCccccc
Q 021869 92 FDELPMETEDEIAAAYEELYGPAYAGVS 119 (306)
Q Consensus 92 ~~~~~~~~~~~~~~~~e~~~~rgwsg~t 119 (306)
|.-+|+-|+|||..|-+-++..||.+.-
T Consensus 15 fSyLP~lt~eqI~kQI~YlL~qGw~p~l 42 (140)
T 1gk8_I 15 FSYLPPLTDEQIAAQVDYIVANGWIPCL 42 (140)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHHHHCCCEeeE
Confidence 5668889999999999999999998753
No 36
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=23.54 E-value=1.3e+02 Score=23.35 Aligned_cols=37 Identities=5% Similarity=0.153 Sum_probs=27.1
Q ss_pred CcceeEEEEeeeeeeecCCeeEEEEEEEEecCCCCceee
Q 021869 149 GFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGV 187 (306)
Q Consensus 149 ~f~~~VL~i~rV~K~TkgGR~~rf~AlVvVGNgnG~vG~ 187 (306)
.+.-+|+++.... +++.|+..++.. +.+||..|.+-+
T Consensus 17 ~v~~~V~~~~~~~-~~k~G~~~~v~~-~~l~DeTG~I~~ 53 (106)
T 2k75_A 17 SVIGKITGIHKKE-YESDGTTKSVYQ-GYIEDDTARIRI 53 (106)
T ss_dssp EEEEEEEEEEEEE-EEETTEEEEEEE-EEEECSSCEEEE
T ss_pred EEEEEEEEccccc-cccCCCeeEEEE-EEEEcCCCeEEE
Confidence 3456888887766 688897666665 677999998754
No 37
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=22.66 E-value=40 Score=28.42 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.1
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCccccc
Q 021869 92 FDELPMETEDEIAAAYEELYGPAYAGVS 119 (306)
Q Consensus 92 ~~~~~~~~~~~~~~~~e~~~~rgwsg~t 119 (306)
|.-+|+-|.|||..+.+-++..||.+..
T Consensus 8 fSyLP~ltdeqI~kQI~Yll~qGw~p~i 35 (138)
T 1bwv_S 8 FSFLPDLTDEQIKKQIDYMISKKLAIGI 35 (138)
T ss_dssp TTTSCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eccCCCCCHHHHHHHHHHHHHCCCeeeE
Confidence 5567899999999999999999998643
No 38
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=21.83 E-value=1.1e+02 Score=23.66 Aligned_cols=43 Identities=26% Similarity=0.223 Sum_probs=29.4
Q ss_pred CeeEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhcceE
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVT 212 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~nLi~ 212 (306)
.....|.+-|.|++. ..+|.|.|+++ ..|-+.|...|...|..
T Consensus 33 ~H~~~F~~~V~v~g~-~~~~~G~G~SK--K~Aeq~AA~~AL~~L~~ 75 (99)
T 1whq_A 33 KNRQKFMCEVRVEGF-NYAGMGNSTNK--KDAQSNAARDFVNYLVR 75 (99)
T ss_dssp SSSEEEEEEEECTTC-SCCEEEEESSH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCe-EEEEEeccCCH--HHHHHHHHHHHHHHHHh
Confidence 355678898988652 25666776665 57777777777776653
No 39
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=20.70 E-value=1.3e+02 Score=21.52 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=26.1
Q ss_pred CeeEEEEEEEEecCCCCceeeccc-chhhHHHHHHHHHHHHHhcc
Q 021869 167 GKQLKFRAIVVVGDKKGQVGVGVA-KAKEVIAAVQKSAVDARRNI 210 (306)
Q Consensus 167 GR~~rf~AlVvVGNgnG~vG~GvG-Kakev~~AIrKA~~~Ak~nL 210 (306)
.....|.+-|.|++. .+|-|.| +++ ..|-+.|-..|...|
T Consensus 31 ~h~~~F~~~v~v~g~--~~~~G~G~~sK--K~Aeq~AA~~al~~L 71 (73)
T 3adg_A 31 SHKSLFQSTVILDGV--RYNSLPGFFNR--KAAEQSAAEVALREL 71 (73)
T ss_dssp TTSCEEEEEEEETTE--EEECCSCBSSH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCE--EEEeeeccCCH--HHHHHHHHHHHHHHh
Confidence 345678888888752 4566666 454 567777777776543
No 40
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=20.67 E-value=17 Score=26.55 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=23.3
Q ss_pred eEEEEEEEEecCCCCceeecccchhhHHHHHHHHHHHHHhc
Q 021869 169 QLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRN 209 (306)
Q Consensus 169 ~~rf~AlVvVGNgnG~vG~GvGKakev~~AIrKA~~~Ak~n 209 (306)
...|.+-|.|++ ..|.|.|+++- .|-+.|-..|...
T Consensus 37 ~~~F~~~v~i~~---~~~~G~G~sKK--~Aeq~AA~~aL~~ 72 (76)
T 1ekz_A 37 MKNFITACIVGS---IVTEGEGNGKK--VSKKRAAEKMLVE 72 (76)
T ss_dssp CSCSSEEEEETT---EEEEECCCSTT--SSSHHHHHHHHHH
T ss_pred CCcEEEEEEECC---EEEEEeeCCHH--HHHHHHHHHHHHH
Confidence 345777777764 77888887764 4555565555543
Done!