RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021869
(306 letters)
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 69
Score = 97.0 bits (242), Expect = 2e-26
Identities = 33/66 (50%), Positives = 50/66 (75%)
Query: 150 FEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRN 209
FEE+++ +RR ++ GG++ +F A+VVVGD++G+VG+G KA EV AVQK+ ARRN
Sbjct: 2 FEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRN 61
Query: 210 IVTVPM 215
+V VP+
Sbjct: 62 MVEVPL 67
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 95.5 bits (238), Expect = 9e-26
Identities = 39/69 (56%), Positives = 52/69 (75%)
Query: 147 KDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDA 206
K EERVV V RV KVVKGG++L+F A+VVVGDK G VG G KA+EV A++K+ DA
Sbjct: 5 KLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDA 64
Query: 207 RRNIVTVPM 215
++N++ VP+
Sbjct: 65 KKNLIEVPI 73
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 95.1 bits (237), Expect = 9e-26
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 150 FEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRN 209
+E+++ V RV+K VKGG+ F A+ VVGD G+VG G KA+EV AA+QK+ ARRN
Sbjct: 2 LQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRN 61
Query: 210 IVTVPM 215
++ V +
Sbjct: 62 MINVAL 67
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 81
Score = 95.5 bits (238), Expect = 9e-26
Identities = 36/79 (45%), Positives = 49/79 (62%)
Query: 220 TFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARA 279
T H G ++V ++PAS GTG+IAGGA+R VLE+AGV N L K GS N +N RA
Sbjct: 2 TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRA 61
Query: 280 TVVAVQKMKQWREVSRERG 298
T+ ++ M V+ +RG
Sbjct: 62 TIDGLENMNSPEMVAAKRG 80
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 93.3 bits (232), Expect = 8e-25
Identities = 38/78 (48%), Positives = 57/78 (73%)
Query: 220 TFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARA 279
T PH + +FGA+K++L+PA+PGTGVIAG R +LE+AGV + L K+LGS N +N A A
Sbjct: 2 TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYA 61
Query: 280 TVVAVQKMKQWREVSRER 297
T+ A+++++ +V R R
Sbjct: 62 TMEALRQLRTKADVERLR 79
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 71
Score = 89.0 bits (221), Expect = 3e-23
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 220 TFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARA 279
T PH G FGA +++L+PAS GTGVIAGG R VLE+AG+ + L K +GSN +N RA
Sbjct: 3 TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRA 62
Query: 280 TVVAVQKMK 288
T ++++K
Sbjct: 63 TFDGLKQLK 71
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 36.4 bits (82), Expect = 0.002
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 12 LSSLSSLSLS---LS------LHSTPRLSFLSTAKLTRLPKL 44
S L +S + L + +L ST L +LP L
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
[TaxId: 562]}
Length = 229
Score = 29.6 bits (65), Expect = 0.36
Identities = 12/74 (16%), Positives = 22/74 (29%)
Query: 50 LVRASESDKPNGIVFDDFNNPDEDAAVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEE 109
L +A + ++ + ++ LP T E+ A +
Sbjct: 131 LEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDA 190
Query: 110 LYGPAYAGVSVLGN 123
L A V+GN
Sbjct: 191 LKSGARPEFMVIGN 204
>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH
{Chromobacterium violaceum [TaxId: 536]}
Length = 277
Score = 29.4 bits (66), Expect = 0.43
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 50 LVRASESDKPNGIVFDDFNNPDEDAAVFDPPTPPEDYTPP----PSFDELPMETEDEIAA 105
+ +S PN + FD + + + + SF +L T + A
Sbjct: 202 SIYCLDSASPNRVGFD----LMR---IMNTRYRIDTFQKTYFVIDSFKQLFDATAPDFAP 254
Query: 106 AYEEL-YGPAYAGVSVLGND 124
Y +L + + +D
Sbjct: 255 LYLQLADAQPWGAGDIAPDD 274
>d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia
coli [TaxId: 562]}
Length = 133
Score = 28.2 bits (62), Expect = 0.58
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 172 FRAIVVVGDKKGQVGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGA 231
R IV++ D G GVG E I + A+ LT + D A
Sbjct: 33 TRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDA 92
Query: 232 AKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL----GKQLG 269
L+ T + + G+E A+ G+ LG
Sbjct: 93 GGRGLQTFDLRTTIHV---------VTGIEAAMLDLLGQHLG 125
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 25.5 bits (56), Expect = 9.1
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 111 YGPAYAGVSVLGNDVYVMDSKAKKTSAFG--KTKKE-KVKDGFEERVVQVRRVTKVVKGG 167
+GPA+ G S+ D+YV + +T AF +T E ++ DG ++ + + G
Sbjct: 324 FGPAFEGESIRKGDMYV-EMGGNRTPAFELVRTVSESEITDG---KIEVIGPDIDQIPEG 379
Query: 168 KQLKFRAIVVVGDKKGQ 184
+L +V + +K Q
Sbjct: 380 SKLPLGILVDIYGRKMQ 396
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 25.7 bits (56), Expect = 9.3
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGV-IAGGAVRIVLEMAG 259
K+ R+ + M K L ++ +A+ + P + +GG R ++ +G
Sbjct: 14 KTFRQQRKEHIRESMKKLLG--PKNSEGLHSARDV-----PVVAILGSGGGFRAMVGFSG 66
Query: 260 VENAL 264
V AL
Sbjct: 67 VMKAL 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.359
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,092,005
Number of extensions: 53706
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 13
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)