BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021870
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
           Domain
 pdb|2XCM|D Chain D, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
           Domain
          Length = 92

 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 81/91 (89%)

Query: 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 2   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61

Query: 165 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 195
            KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 62  DKCKYEVLSTKIEICLAKADIITWASLEHGK 92


>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
 pdb|2JKI|T Chain T, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
 pdb|2JKI|U Chain U, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
          Length = 90

 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 80/88 (90%)

Query: 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 164
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 1   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 60

Query: 165 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 192
            KC+YEVLSTK+EI LAKA+ I W+SLE
Sbjct: 61  DKCKYEVLSTKIEICLAKADIITWASLE 88


>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
          Length = 114

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 56/90 (62%)

Query: 103 RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKI 162
           + K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   I
Sbjct: 7   QSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPI 66

Query: 163 IPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 192
           IP +  ++VLSTK+EI+L K E ++W  LE
Sbjct: 67  IPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 96


>pdb|1WH0|A Chain A, Solution Structure Of The Cs Domain Of Human Usp19
          Length = 134

 Score = 34.7 bits (78), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 107 RHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV---------PG---EEAYH 153
           +++ Y+K P+ VVV V+ K I      V F EQ  ++             PG      + 
Sbjct: 21  KNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFR 80

Query: 154 FQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 192
           +Q +L   I P +C +   +++++I L K +  +W  LE
Sbjct: 81  WQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLE 119


>pdb|2JTT|C Chain C, Solution Structure Of Calcium Loaded S100a6 Bound To C-
           Terminal Siah-1 Interacting Protein
 pdb|2JTT|D Chain D, Solution Structure Of Calcium Loaded S100a6 Bound To C-
           Terminal Siah-1 Interacting Protein
          Length = 35

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 247 ALNKFFQEIYADADEDTRRAMKKSFVES 274
            L    ++IY D D+D +R + K++VES
Sbjct: 7   GLMNVLKKIYEDGDDDMKRTINKAWVES 34


>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
           Peptide Synthetase From Mycobacterium Tuberculosis
          Length = 478

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 249 NKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE-----GSPPD-GMEMK 302
            +    + A++DED RR ++K+F +S    L  ++KE+ + ++E      S PD G++  
Sbjct: 101 GRLICLVRAESDEDARRRLEKTF-DSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQP 159

Query: 303 KWE 305
            W 
Sbjct: 160 XWR 162


>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
 pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
          Length = 370

 Score = 27.7 bits (60), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 2   SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 49
           +KA +R+A     L+EY+ A   L+K   +AP D      + + +++I
Sbjct: 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,199,143
Number of Sequences: 62578
Number of extensions: 365350
Number of successful extensions: 664
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 11
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)