BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021871
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 18/259 (6%)
Query: 45 SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
S E + VIVG G+ AA ++G +GR+ ++ +E PYERP L+K YL
Sbjct: 3 SEVQAERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYL--- 58
Query: 105 DKKPARLPGFH-TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
AR F C+ + +++++K +EM V S+D T+ G ++Y
Sbjct: 59 ----AREKTFERICI------RPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEY 108
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKXXXXXXXYIGMEV 222
G LI ATG R +G L GVH +R DAD L++ L+ AK YIG+E
Sbjct: 109 GKLIWATGGDPRRL-SCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEA 167
Query: 223 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
AA + ++ T++ +L R+ +L++ Y+ ++ +GV GA++ +E G +
Sbjct: 168 AAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTK 226
Query: 283 VAAVKLEDGSTIDADTVIL 301
V V+++DGS I AD VI+
Sbjct: 227 VTGVRMQDGSVIPADIVIV 245
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 25/252 (9%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
V++ G AG+ + GR+ +++ E + PY+RP L+K YL
Sbjct: 4 VLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYL------------- 50
Query: 115 HTCVGSGGERQT----PE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 169
SGG+ + PE +++++ IE+I D + SID E + L+ SG ++YG L++A
Sbjct: 51 ----KSGGDPNSLMFRPEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLA 105
Query: 170 TGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGW 229
TG +R + LP V Y+R + +++ L + K +IG+E AA A
Sbjct: 106 TGAR-NRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAK 164
Query: 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289
L+ ++ ++ R+ TP ++ + + G++ G + A D RV V L
Sbjct: 165 GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLS 223
Query: 290 DGSTIDADTVIL 301
DG+T+ D V++
Sbjct: 224 DGNTLPCDLVVV 235
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 16/255 (6%)
Query: 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
N N VIVG G A A G +G + +V P+ P L+K YL
Sbjct: 1 NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 55
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
A + +TP+ Y + I+++ VT+I+ ++Q +I + G+ L Y L++
Sbjct: 56 ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 107
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
ATG P G G Y+R + DA+ + L + YIG+EVAA A
Sbjct: 108 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 167
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 285
+ + T++ +L+R+ P ++ YE L+++ GV G + E +D +V A
Sbjct: 168 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 227
Query: 286 VKLEDGSTIDADTVI 300
V EDG+ + AD VI
Sbjct: 228 VLCEDGTRLPADLVI 242
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 16/255 (6%)
Query: 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
N N VIVG G A A G +G + +V P+ P L+K YL
Sbjct: 2 NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
A + +TP+ Y + I+++ VT+I+ ++Q +I + G+ L Y L++
Sbjct: 57 ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
ATG P G G Y+R + DA+ + L + YIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 285
+ + T++ +L+R+ P ++ YE L+++ GV G + E +D +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228
Query: 286 VKLEDGSTIDADTVI 300
V EDG+ + AD VI
Sbjct: 229 VLCEDGTRLPADLVI 243
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 21/255 (8%)
Query: 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH 115
I+G G A+ G +GR+ ++ E + PY+RP+L+K L ++P L
Sbjct: 7 IIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL---- 61
Query: 116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175
+WY E I+M+ VT++D++ +T+ + G L ++++ATG A
Sbjct: 62 ---------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA- 111
Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 235
R G LPGV +R D L S A + IG EVA A L TI
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
+ + LL R+ + L + GV+ G + +G++ V DG +
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFV 229
Query: 296 ADTVILL----PYDQ 306
AD+ ++ P DQ
Sbjct: 230 ADSALICVGAEPADQ 244
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 28/243 (11%)
Query: 63 AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
AG A+ +FV G + +V EA PY+RP L+K ++ D + RL C
Sbjct: 15 AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
++ PE +E + S D + T+ + G+ L YG+L++ATG P
Sbjct: 69 ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
G +P VH +R + DA + + L + IG+E+AA A + +++ +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 298
L+ R +LA + + GV E G V V L+DG+ I AD
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 299 VIL 301
V++
Sbjct: 231 VVV 233
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 28/243 (11%)
Query: 63 AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
AG A+ +FV G + +V EA PY+RP L+K ++ D + RL C
Sbjct: 15 AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
++ PE +E + S D + T+ + G+ L YG+L++ATG P
Sbjct: 69 ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
G +P VH +R + DA + + L + IG+E+AA A + +++ +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 298
L+ R +LA + + GV E G V V L+DG+ I AD
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 299 VIL 301
V++
Sbjct: 231 VVV 233
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 12/186 (6%)
Query: 125 QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
+ PE+++ K +E + + +ID +E + L T + LKY L++A G A+R P
Sbjct: 70 RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTI 235
+ G L GV + ++ +A+ + ++ + K +IG+E+A + A W +DTT+
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
+ + ++ + SL+Q ++N V G + LE G +G+VA V + D T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 296 ADTVIL 301
AD VIL
Sbjct: 247 ADLVIL 252
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 18/186 (9%)
Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 180
+PE G + + VT++D E +T LITN K Y LI+ TG + P
Sbjct: 64 SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 181 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 235
+PG V+ ++ DA L KAK YIG E+A A + +
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
I +L + F + Y+ +GV V G+ + E D + K DG I
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 296 ADTVIL 301
+D IL
Sbjct: 236 SDIAIL 241
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 26/243 (10%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 75 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
+ R + D AL + K ++G E+ A A+G K ++ +F
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 251
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 298 TVI 300
++
Sbjct: 310 HIV 312
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 26/243 (10%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 56 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
+ R + D AL + K ++G E+ A A+G K ++ +F
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 232
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 298 TVI 300
++
Sbjct: 291 HIV 293
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 26/243 (10%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 80 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
+ R + D AL + K ++G E+ A A+G K ++ +F
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 256
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 298 TVI 300
++
Sbjct: 315 HIV 317
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 26/243 (10%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 38 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + Y ++ATG T ++ G
Sbjct: 96 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 237
+ R + D +L + K ++G E+ A A+G K L T +I F
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 214
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
PE + ++ L+ + ++ GVK + A ++++ S G++ +KL+DG ++ D
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS-GKL-LIKLKDGRKVETD 272
Query: 298 TVI 300
++
Sbjct: 273 HIV 275
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 26/243 (10%)
Query: 79 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 56 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
+ G+ ++ V +D+ + N G + Y ++ATG T ++ G
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 237
+ R + D +L + K ++G E+ A A+G K L T +I F
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 232
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
PE + ++ L+ + ++ GVK + A ++++ S G++ +KL+DG ++ D
Sbjct: 233 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETD 290
Query: 298 TVI 300
++
Sbjct: 291 HIV 293
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 34/260 (13%)
Query: 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-----AYAPYERPALTKGYLFPLDKKP 108
+VI+GG A AA V + D +V+ E +YA P + G + +K
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN---DENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLI 95
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKY 163
AR + + GI+ + VT +D EK+ + K Y
Sbjct: 96 AR--------------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGME 221
L++ATG PE G L GVH ++ + DA+ ++ +LE K + IG+E
Sbjct: 142 DRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200
Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
+A V +I +H + ++ +A+ + ++ ++ + ++K +
Sbjct: 201 MAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE-- 257
Query: 282 RVAAVKLEDGSTIDADTVIL 301
RV AV+ + G T AD V++
Sbjct: 258 RVEAVETDKG-TYKADLVLV 276
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
+ +I+G G A AA+ + G D + +++ E Y PY RP L + + K +
Sbjct: 11 KILILGAGPAGFSAAKAAL--GKCDD-ITMINSEKYLPYYRPRLNE-----IIAKNKSID 62
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
+ +WY++ I++I + TSID + + SG+ +KY LI+A+G
Sbjct: 63 DILI--------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGS 114
Query: 173 TASRF 177
A++
Sbjct: 115 IANKI 119
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187
+WY+++GIE+ + ID ++ +IT G+ + Y +L++ATG A R P+ + G
Sbjct: 68 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 188 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
Y +R + DAD + S+E + + +IG+E+A +I L
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
L+ + + ++ GVKF + + LEA +G
Sbjct: 181 --LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG 213
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 145 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204
+++++K+ N+ ++ ++VATG A FPE I G+ G D+D
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 205 EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264
E+ KK YIG+E+A G +T ++ +L R F + Y + G+
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGI 241
Query: 265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
K + I +E + + + D +ID
Sbjct: 242 NVHKLSKIVKVEKNVETDKLKIHMNDSKSID 272
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 178
R + + GI+ + VT +D EK+ + K Y L++ATG P
Sbjct: 97 RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XP 155
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
E G L GVH ++ + DA+ ++ +LE K + IG+E A V I
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXI 215
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
+H + ++ A+ + ++ ++ + ++K + RV AV+ + G T A
Sbjct: 216 ERNDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKA 271
Query: 297 DTVIL 301
D V++
Sbjct: 272 DLVLV 276
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 274 NLEAGSDGRV 283
+EAG+ GR+
Sbjct: 258 QIEAGTPGRL 267
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 274 NLEAGSDGRV 283
+EAG+ GR+
Sbjct: 258 QIEAGTPGRL 267
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 274 NLEAGSDGRVAAV 286
+EAG+ GR+ V
Sbjct: 278 QIEAGTPGRLRVV 290
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 274 NLEAGSDGRVAAV 286
+EAG+ GR+ V
Sbjct: 278 QIEAGTPGRLRVV 290
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 214 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 271
Query: 274 NLEAGSDGRVAAV 286
+EAG+ GR+ V
Sbjct: 272 QIEAGTPGRLRVV 284
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 222 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 279
Query: 274 NLEAGSDGRVAAV 286
+EAG+ GR+ V
Sbjct: 280 QIEAGTPGRLRVV 292
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289
K+ T+ P +L +P+ + +Y Q G+K V IK + R + E
Sbjct: 201 KVHVTVFSPGEYLSD--LSPNSRKAVASIYNQLGIKLVHNFKIKEI------REHEIVDE 252
Query: 290 DGSTIDADTVILLP 303
G+TI AD ILLP
Sbjct: 253 KGNTIPADITILLP 266
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 215
+S + + + I+ATG SR E LP + + D+ ++ E K
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 216 XYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 275
YIG+E+ A + TI+ +L F +A ++ ++ GV+ V A K
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA 237
Query: 276 EAGSDGRVAAVKLE-DGSTIDADTVIL 301
E DG + + TIDAD V++
Sbjct: 238 EEREDGVTVTYEANGETKTIDADYVLV 264
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGY------LPGVHYI---RDVADADALISSLEK 206
N+ KLL G + TA R +GG+ LPG + D AL S+
Sbjct: 121 NTVKLLASGKTV-----TAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILI 175
Query: 207 AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266
A YI +E A G + TT+I+ +L R F + ++ G++
Sbjct: 176 A------GGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRI 228
Query: 267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301
+ I+++ A +DGR A + G + AD V L
Sbjct: 229 LCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXL 262
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKI 181
WY E Y+ + ++I Q L + K Y IV +GCT R P+K+
Sbjct: 209 WYTPIRREWYYEVIIVRVEINGQDLKMDC-KEYNYDKSIVDSGCTNLRLPKKV 260
>pdb|2JEL|H Chain H, Jel42 FabHPR COMPLEX
Length = 218
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 23 SLHRIRHSSAKNFQRRGFVVAYSSFANENREF 54
++H ++ S AK+ + G + YS + N N++F
Sbjct: 33 AMHWVKQSHAKSLEWIGLISTYSGYTNYNQKF 64
>pdb|3GRK|A Chain A, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|B Chain B, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|C Chain C, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|D Chain D, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|E Chain E, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|F Chain F, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|G Chain G, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|H Chain H, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
Length = 293
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
E++G ++ G + D A DA+ +LEK IG G +DT+
Sbjct: 76 LAEELGAFVAGHCDVADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEA 135
Query: 237 FPENHLLQRLFT-PSLAQRYEQLYQQNG 263
N +L +++ ++++R E+L G
Sbjct: 136 NFTNTMLISVYSLTAVSRRAEKLMADGG 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,985,820
Number of Sequences: 62578
Number of extensions: 362711
Number of successful extensions: 940
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 60
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)