Query 021871
Match_columns 306
No_of_seqs 146 out of 2143
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 1.1E-31 2.3E-36 238.3 30.6 238 50-305 2-239 (396)
2 PRK04965 NADH:flavorubredoxin 100.0 3.6E-30 7.9E-35 227.3 28.9 236 51-305 2-237 (377)
3 PRK14989 nitrite reductase sub 100.0 3.3E-30 7.2E-35 244.8 30.0 241 51-306 3-244 (847)
4 TIGR02374 nitri_red_nirB nitri 100.0 4.5E-30 9.7E-35 244.1 28.6 237 54-306 1-237 (785)
5 COG1252 Ndh NADH dehydrogenase 100.0 1.4E-30 3E-35 224.5 22.3 228 50-306 2-261 (405)
6 PRK09564 coenzyme A disulfide 100.0 7.9E-29 1.7E-33 223.6 29.0 237 53-306 2-245 (444)
7 PRK13512 coenzyme A disulfide 100.0 1.1E-28 2.4E-33 221.5 28.1 232 52-306 2-240 (438)
8 KOG1336 Monodehydroascorbate/f 100.0 9.9E-29 2.2E-33 211.6 25.6 238 51-305 74-311 (478)
9 PTZ00318 NADH dehydrogenase-li 100.0 1.6E-27 3.5E-32 213.1 22.3 230 49-305 8-278 (424)
10 PRK05249 soluble pyridine nucl 100.0 5.7E-27 1.2E-31 212.3 22.4 242 49-306 3-271 (461)
11 PRK06116 glutathione reductase 100.0 6.2E-27 1.3E-31 211.3 21.8 234 51-305 4-263 (450)
12 PRK08010 pyridine nucleotide-d 100.0 3.8E-27 8.2E-32 212.2 19.9 238 50-306 2-253 (441)
13 TIGR01421 gluta_reduc_1 glutat 100.0 4.4E-27 9.4E-32 211.6 19.9 236 51-306 2-264 (450)
14 PRK07251 pyridine nucleotide-d 100.0 3.6E-27 7.7E-32 212.2 18.6 239 50-306 2-252 (438)
15 TIGR01424 gluta_reduc_2 glutat 100.0 1.2E-26 2.6E-31 208.9 21.3 236 51-306 2-262 (446)
16 TIGR03169 Nterm_to_SelD pyridi 100.0 2.8E-26 6E-31 201.9 22.4 229 53-306 1-242 (364)
17 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.3E-26 2.9E-31 204.8 20.2 240 49-306 2-271 (454)
18 PRK06370 mercuric reductase; V 99.9 1.2E-26 2.5E-31 210.2 19.6 241 48-306 2-270 (463)
19 PRK05976 dihydrolipoamide dehy 99.9 3.5E-26 7.6E-31 207.5 22.6 242 50-306 3-280 (472)
20 PRK06416 dihydrolipoamide dehy 99.9 3.6E-26 7.9E-31 207.1 21.4 243 50-306 3-271 (462)
21 COG0492 TrxB Thioredoxin reduc 99.9 1.7E-26 3.7E-31 194.8 17.5 223 50-305 2-236 (305)
22 PRK10262 thioredoxin reductase 99.9 3.5E-26 7.5E-31 197.8 19.3 234 48-306 3-247 (321)
23 PLN02507 glutathione reductase 99.9 2.3E-25 5E-30 202.4 25.5 239 50-306 24-299 (499)
24 TIGR01292 TRX_reduct thioredox 99.9 6.2E-26 1.3E-30 194.6 19.9 225 52-306 1-237 (300)
25 PLN02546 glutathione reductase 99.9 2.2E-25 4.9E-30 203.5 22.5 238 51-306 79-349 (558)
26 PTZ00058 glutathione reductase 99.9 3E-25 6.5E-30 202.6 22.7 239 49-306 46-335 (561)
27 PRK06467 dihydrolipoamide dehy 99.9 1E-25 2.2E-30 203.9 19.6 240 50-306 3-273 (471)
28 PRK14694 putative mercuric red 99.9 4.8E-25 1E-29 199.7 22.6 240 48-306 3-272 (468)
29 TIGR02053 MerA mercuric reduct 99.9 1.4E-25 3E-30 203.2 18.6 236 52-306 1-265 (463)
30 COG1251 NirB NAD(P)H-nitrite r 99.9 5.9E-25 1.3E-29 197.0 21.9 240 50-305 2-241 (793)
31 PRK06115 dihydrolipoamide dehy 99.9 7.4E-25 1.6E-29 198.1 22.7 242 50-306 2-275 (466)
32 PRK07845 flavoprotein disulfid 99.9 6.9E-25 1.5E-29 198.3 21.9 239 51-306 1-273 (466)
33 TIGR03140 AhpF alkyl hydropero 99.9 7.7E-25 1.7E-29 200.2 19.7 229 49-306 210-449 (515)
34 TIGR01423 trypano_reduc trypan 99.9 1.1E-24 2.4E-29 196.8 20.1 240 50-306 2-287 (486)
35 PRK15317 alkyl hydroperoxide r 99.9 1.3E-24 2.7E-29 199.0 19.5 229 49-306 209-448 (517)
36 TIGR01350 lipoamide_DH dihydro 99.9 2.5E-24 5.4E-29 195.2 21.0 239 51-305 1-267 (461)
37 PRK07818 dihydrolipoamide dehy 99.9 1.5E-24 3.4E-29 196.4 19.6 238 50-306 3-272 (466)
38 PRK07846 mycothione reductase; 99.9 7.2E-24 1.6E-28 190.7 22.3 234 51-306 1-261 (451)
39 PRK13748 putative mercuric red 99.9 1.1E-23 2.4E-28 195.3 24.3 238 50-306 97-364 (561)
40 PTZ00052 thioredoxin reductase 99.9 6.4E-24 1.4E-28 193.1 21.6 239 51-306 5-277 (499)
41 PLN02172 flavin-containing mon 99.9 9.5E-25 2.1E-29 195.6 14.7 234 48-306 7-287 (461)
42 PRK06327 dihydrolipoamide dehy 99.9 7.4E-24 1.6E-28 192.2 20.6 241 50-306 3-283 (475)
43 PRK06912 acoL dihydrolipoamide 99.9 9.9E-24 2.1E-28 190.6 21.0 236 53-306 2-267 (458)
44 TIGR01438 TGR thioredoxin and 99.9 4.1E-23 8.8E-28 187.0 24.7 238 51-306 2-278 (484)
45 PRK14727 putative mercuric red 99.9 1.1E-23 2.5E-28 191.1 20.9 239 50-306 15-282 (479)
46 PRK12831 putative oxidoreducta 99.9 1.1E-23 2.5E-28 189.7 20.5 227 49-306 138-395 (464)
47 TIGR01316 gltA glutamate synth 99.9 7.1E-24 1.5E-28 190.7 18.3 226 49-306 131-386 (449)
48 TIGR03143 AhpF_homolog putativ 99.9 1.2E-23 2.5E-28 193.8 19.3 227 50-306 3-245 (555)
49 PRK06292 dihydrolipoamide dehy 99.9 7.3E-24 1.6E-28 192.1 17.5 236 50-306 2-267 (460)
50 TIGR03385 CoA_CoA_reduc CoA-di 99.9 3.1E-22 6.8E-27 179.7 24.9 224 65-306 1-232 (427)
51 PTZ00153 lipoamide dehydrogena 99.9 2.2E-22 4.7E-27 186.2 24.0 148 151-306 262-426 (659)
52 PRK11749 dihydropyrimidine deh 99.9 2.9E-23 6.2E-28 187.6 17.4 225 49-306 138-386 (457)
53 TIGR03452 mycothione_red mycot 99.9 4.2E-22 9.2E-27 179.4 23.9 231 51-306 2-264 (452)
54 PRK12779 putative bifunctional 99.9 1.2E-22 2.6E-27 195.1 20.8 227 49-306 304-561 (944)
55 PF00743 FMO-like: Flavin-bind 99.9 1.5E-23 3.3E-28 190.3 12.5 181 52-242 2-218 (531)
56 PRK12778 putative bifunctional 99.9 1.4E-22 3E-27 193.0 19.2 226 49-306 429-685 (752)
57 PRK09853 putative selenate red 99.9 7.4E-22 1.6E-26 187.4 21.1 222 49-306 537-778 (1019)
58 KOG0405 Pyridine nucleotide-di 99.9 2.1E-22 4.5E-27 165.6 13.4 241 49-305 18-285 (478)
59 KOG2495 NADH-dehydrogenase (ub 99.9 7.4E-22 1.6E-26 166.8 15.5 229 48-305 52-327 (491)
60 TIGR01372 soxA sarcosine oxida 99.9 8.2E-21 1.8E-25 185.0 24.5 225 50-306 162-410 (985)
61 KOG1335 Dihydrolipoamide dehyd 99.9 1.2E-21 2.6E-26 163.1 14.3 244 50-306 38-313 (506)
62 PRK12770 putative glutamate sy 99.9 1E-20 2.2E-25 165.5 20.8 228 50-306 17-285 (352)
63 PRK12775 putative trifunctiona 99.9 2.2E-21 4.7E-26 188.1 18.2 225 50-306 429-685 (1006)
64 PLN02852 ferredoxin-NADP+ redu 99.9 1.5E-20 3.2E-25 168.3 20.4 232 49-305 24-352 (491)
65 COG0446 HcaD Uncharacterized N 99.9 1.7E-19 3.6E-24 161.6 26.9 233 54-305 1-235 (415)
66 PRK12814 putative NADPH-depend 99.9 6.8E-21 1.5E-25 178.3 17.3 225 49-306 191-436 (652)
67 PRK12810 gltD glutamate syntha 99.9 1.1E-20 2.3E-25 171.2 17.2 231 49-306 141-399 (471)
68 TIGR01318 gltD_gamma_fam gluta 99.9 2.4E-20 5.3E-25 168.4 19.4 225 50-306 140-397 (467)
69 KOG0404 Thioredoxin reductase 99.9 4.7E-21 1E-25 148.6 12.2 236 50-305 7-253 (322)
70 PRK12769 putative oxidoreducta 99.9 5E-20 1.1E-24 173.0 21.3 225 50-306 326-583 (654)
71 TIGR03315 Se_ygfK putative sel 99.9 1.9E-20 4.1E-25 178.7 18.5 218 50-306 536-775 (1012)
72 KOG1346 Programmed cell death 99.9 3.6E-20 7.8E-25 155.9 17.7 253 50-305 177-447 (659)
73 PF13434 K_oxygenase: L-lysine 99.8 6.6E-20 1.4E-24 158.3 15.7 248 51-305 2-339 (341)
74 PF13738 Pyr_redox_3: Pyridine 99.8 1E-20 2.3E-25 152.9 9.6 179 55-242 1-202 (203)
75 PRK12809 putative oxidoreducta 99.8 3.1E-19 6.7E-24 167.0 20.0 225 50-306 309-566 (639)
76 COG2072 TrkA Predicted flavopr 99.8 1.5E-19 3.3E-24 161.5 15.2 184 48-243 5-211 (443)
77 TIGR01317 GOGAT_sm_gam glutama 99.8 8.5E-19 1.8E-23 159.0 18.8 230 50-305 142-412 (485)
78 PRK13984 putative oxidoreducta 99.8 1.8E-18 3.8E-23 161.7 20.4 223 49-306 281-537 (604)
79 KOG1399 Flavin-containing mono 99.8 7.6E-19 1.6E-23 155.0 15.9 231 49-305 4-267 (448)
80 PRK06567 putative bifunctional 99.8 3.5E-18 7.5E-23 160.8 18.6 234 49-306 381-727 (1028)
81 PRK12771 putative glutamate sy 99.8 6.9E-18 1.5E-22 156.3 17.2 224 49-306 135-379 (564)
82 KOG4716 Thioredoxin reductase 99.8 4.6E-18 1E-22 139.8 13.7 135 159-305 158-298 (503)
83 COG3634 AhpF Alkyl hydroperoxi 99.7 5.1E-18 1.1E-22 140.0 8.4 227 49-304 209-449 (520)
84 COG3486 IucD Lysine/ornithine 99.7 3.2E-15 7E-20 126.6 22.0 250 48-306 2-339 (436)
85 COG0493 GltD NADPH-dependent g 99.7 6.4E-16 1.4E-20 137.3 10.9 230 50-305 122-383 (457)
86 PTZ00188 adrenodoxin reductase 99.6 8E-14 1.7E-18 123.5 16.4 153 50-227 38-217 (506)
87 KOG1800 Ferredoxin/adrenodoxin 99.5 8.8E-14 1.9E-18 116.6 9.9 154 51-228 20-180 (468)
88 PF00070 Pyr_redox: Pyridine n 99.5 4.7E-13 1E-17 91.0 11.1 80 209-291 1-80 (80)
89 KOG2755 Oxidoreductase [Genera 99.5 4E-13 8.6E-18 107.2 9.3 172 53-259 1-184 (334)
90 COG0579 Predicted dehydrogenas 99.4 2.4E-12 5.1E-17 112.8 14.7 203 49-305 1-209 (429)
91 PF07992 Pyr_redox_2: Pyridine 99.4 4.9E-15 1.1E-19 119.5 -3.1 147 53-214 1-159 (201)
92 KOG0399 Glutamate synthase [Am 99.4 6.3E-13 1.4E-17 124.2 9.8 156 49-230 1783-1947(2142)
93 COG2081 Predicted flavoprotein 99.4 6.5E-12 1.4E-16 107.0 14.6 78 225-305 87-165 (408)
94 KOG3851 Sulfide:quinone oxidor 99.4 7.1E-12 1.5E-16 103.0 11.6 235 49-305 37-294 (446)
95 PRK09897 hypothetical protein; 99.4 2.5E-11 5.5E-16 110.5 15.3 170 51-229 1-213 (534)
96 COG4529 Uncharacterized protei 99.3 7.3E-11 1.6E-15 103.1 16.9 187 51-240 1-231 (474)
97 PF01266 DAO: FAD dependent ox 99.3 9E-13 1.9E-17 115.6 4.2 56 248-305 146-201 (358)
98 COG1148 HdrA Heterodisulfide r 99.3 3.2E-11 6.9E-16 104.4 12.7 39 49-90 122-160 (622)
99 PRK11728 hydroxyglutarate oxid 99.3 4.6E-11 1E-15 106.4 12.4 55 248-305 148-202 (393)
100 PRK05329 anaerobic glycerol-3- 99.3 2.9E-10 6.2E-15 100.9 17.3 91 211-305 219-316 (422)
101 PF03486 HI0933_like: HI0933-l 99.2 9.7E-12 2.1E-16 109.9 5.5 121 52-175 1-167 (409)
102 PRK12842 putative succinate de 99.2 2.2E-11 4.8E-16 113.2 7.5 104 201-305 151-273 (574)
103 PTZ00383 malate:quinone oxidor 99.2 9.8E-10 2.1E-14 99.7 16.4 56 248-305 210-271 (497)
104 COG1232 HemY Protoporphyrinoge 99.2 1.5E-10 3.3E-15 102.2 10.8 38 52-90 1-38 (444)
105 TIGR01373 soxB sarcosine oxida 99.2 1.6E-09 3.4E-14 97.1 17.3 56 248-304 182-237 (407)
106 TIGR03329 Phn_aa_oxid putative 99.2 7.4E-10 1.6E-14 100.6 14.7 54 248-305 182-235 (460)
107 PRK12409 D-amino acid dehydrog 99.2 1.3E-09 2.9E-14 97.6 15.8 47 52-101 2-48 (410)
108 TIGR01377 soxA_mon sarcosine o 99.2 1.7E-09 3.7E-14 95.9 16.3 55 248-305 144-198 (380)
109 TIGR02734 crtI_fam phytoene de 99.2 7E-10 1.5E-14 102.0 14.2 57 248-305 218-274 (502)
110 COG1233 Phytoene dehydrogenase 99.1 8.7E-11 1.9E-15 107.0 7.7 55 248-303 223-277 (487)
111 PRK00711 D-amino acid dehydrog 99.1 8.4E-10 1.8E-14 99.1 14.0 56 248-305 200-255 (416)
112 PRK01747 mnmC bifunctional tRN 99.1 4.9E-10 1.1E-14 106.1 12.8 55 248-305 407-461 (662)
113 PRK13977 myosin-cross-reactive 99.1 6.5E-10 1.4E-14 100.7 12.9 89 216-305 191-291 (576)
114 PRK06847 hypothetical protein; 99.1 2.8E-10 6.1E-15 100.7 9.7 123 50-175 3-164 (375)
115 PRK11259 solA N-methyltryptoph 99.1 3.4E-09 7.3E-14 93.9 15.7 55 248-305 148-202 (376)
116 TIGR03364 HpnW_proposed FAD de 99.1 2E-09 4.4E-14 95.0 14.1 51 248-305 144-195 (365)
117 PRK07233 hypothetical protein; 99.1 4.1E-10 9E-15 101.6 9.4 56 248-305 197-252 (434)
118 TIGR02731 phytoene_desat phyto 99.1 1.7E-09 3.7E-14 98.2 12.8 58 248-305 212-274 (453)
119 PLN02612 phytoene desaturase 99.1 2.2E-09 4.7E-14 99.6 13.3 56 249-304 308-363 (567)
120 PRK08773 2-octaprenyl-3-methyl 99.1 4.1E-09 8.9E-14 93.9 14.4 55 249-305 113-167 (392)
121 PRK06134 putative FAD-binding 99.1 1.8E-09 3.8E-14 100.6 12.5 57 248-305 216-276 (581)
122 PRK05257 malate:quinone oxidor 99.1 4.5E-09 9.8E-14 95.6 14.5 57 248-305 182-244 (494)
123 PRK07208 hypothetical protein; 99.0 6.4E-10 1.4E-14 101.7 8.6 57 248-304 217-277 (479)
124 PRK06834 hypothetical protein; 99.0 1.3E-09 2.9E-14 99.3 10.6 123 50-175 2-157 (488)
125 TIGR01320 mal_quin_oxido malat 99.0 6.8E-09 1.5E-13 94.4 14.9 57 248-305 177-238 (483)
126 PRK11883 protoporphyrinogen ox 99.0 6E-09 1.3E-13 94.6 14.4 38 52-90 1-38 (451)
127 PLN02463 lycopene beta cyclase 99.0 1.2E-09 2.5E-14 98.1 9.4 123 49-175 26-170 (447)
128 COG0644 FixC Dehydrogenases (f 99.0 1.3E-09 2.8E-14 97.1 9.3 122 50-174 2-152 (396)
129 TIGR02032 GG-red-SF geranylger 99.0 1.7E-09 3.6E-14 92.4 9.5 120 52-174 1-148 (295)
130 PRK10157 putative oxidoreducta 99.0 1.6E-09 3.5E-14 97.3 9.6 120 50-174 4-164 (428)
131 TIGR00292 thiazole biosynthesi 99.0 2.3E-09 5E-14 89.0 9.6 120 50-174 20-170 (254)
132 PRK04176 ribulose-1,5-biphosph 99.0 1.9E-09 4E-14 89.9 8.9 121 50-175 24-174 (257)
133 PRK07843 3-ketosteroid-delta-1 99.0 2.7E-09 5.8E-14 99.0 10.8 98 206-305 159-267 (557)
134 PRK07190 hypothetical protein; 99.0 1.8E-09 4E-14 98.3 9.6 122 50-174 4-165 (487)
135 PRK06184 hypothetical protein; 99.0 2.3E-09 5E-14 98.5 9.8 122 50-174 2-168 (502)
136 TIGR00562 proto_IX_ox protopor 99.0 9.3E-09 2E-13 93.7 13.7 37 51-90 2-42 (462)
137 PRK12416 protoporphyrinogen ox 99.0 8E-09 1.7E-13 94.1 12.8 51 250-304 227-277 (463)
138 TIGR03378 glycerol3P_GlpB glyc 99.0 4.9E-08 1.1E-12 85.9 16.5 72 230-305 247-320 (419)
139 PRK11101 glpA sn-glycerol-3-ph 99.0 3.1E-08 6.7E-13 91.7 16.0 57 248-305 148-209 (546)
140 COG0665 DadA Glycine/D-amino a 99.0 1.9E-08 4E-13 89.5 14.2 55 248-305 155-210 (387)
141 PRK07045 putative monooxygenas 99.0 2.5E-08 5.4E-13 88.8 14.8 56 250-305 107-163 (388)
142 PRK10015 oxidoreductase; Provi 98.9 3.8E-09 8.2E-14 94.9 9.3 122 50-174 4-164 (429)
143 PRK07333 2-octaprenyl-6-methox 98.9 4.6E-09 1E-13 93.9 9.4 122 51-175 1-168 (403)
144 PRK08163 salicylate hydroxylas 98.9 8.2E-08 1.8E-12 85.7 17.4 54 250-305 110-164 (396)
145 COG1635 THI4 Ribulose 1,5-bisp 98.9 3.3E-09 7.2E-14 83.1 7.1 48 51-103 30-77 (262)
146 PRK07236 hypothetical protein; 98.9 8.9E-09 1.9E-13 91.6 10.9 124 49-175 4-155 (386)
147 PRK13339 malate:quinone oxidor 98.9 3.9E-08 8.5E-13 89.1 15.0 57 248-305 183-245 (497)
148 COG0654 UbiH 2-polyprenyl-6-me 98.9 3.2E-08 6.9E-13 88.0 14.1 56 248-305 103-160 (387)
149 KOG0029 Amine oxidase [Seconda 98.9 2.4E-09 5.2E-14 96.8 6.4 40 48-90 12-51 (501)
150 TIGR02732 zeta_caro_desat caro 98.9 1.2E-08 2.7E-13 92.8 11.0 58 248-305 218-282 (474)
151 PRK08020 ubiF 2-octaprenyl-3-m 98.9 1.1E-08 2.4E-13 91.1 9.9 123 50-175 4-170 (391)
152 PRK09126 hypothetical protein; 98.9 5.2E-09 1.1E-13 93.3 7.7 122 50-175 2-168 (392)
153 PLN02576 protoporphyrinogen ox 98.9 7.6E-08 1.6E-12 88.5 15.6 38 50-90 11-49 (496)
154 TIGR02733 desat_CrtD C-3',4' d 98.9 2.1E-08 4.6E-13 92.0 11.7 56 248-304 231-291 (492)
155 TIGR01790 carotene-cycl lycope 98.9 8.2E-09 1.8E-13 91.9 8.7 118 53-174 1-141 (388)
156 PRK08274 tricarballylate dehyd 98.9 1.6E-07 3.4E-12 85.7 17.2 57 248-305 130-190 (466)
157 PRK08244 hypothetical protein; 98.9 1E-08 2.2E-13 94.1 9.4 120 51-174 2-159 (493)
158 PRK06183 mhpA 3-(3-hydroxyphen 98.9 1.2E-08 2.6E-13 94.6 9.5 37 49-88 8-44 (538)
159 TIGR02730 carot_isom carotene 98.9 1.1E-07 2.4E-12 87.2 15.7 56 248-304 228-283 (493)
160 PF00070 Pyr_redox: Pyridine n 98.8 8.2E-09 1.8E-13 70.0 6.1 78 53-158 1-80 (80)
161 PF05834 Lycopene_cycl: Lycope 98.8 9.4E-09 2E-13 90.8 8.1 118 53-175 1-143 (374)
162 PLN02697 lycopene epsilon cycl 98.8 1.1E-08 2.3E-13 93.4 8.5 121 51-175 108-249 (529)
163 PRK07608 ubiquinone biosynthes 98.8 1.3E-08 2.8E-13 90.6 8.8 37 50-89 4-40 (388)
164 PRK08013 oxidoreductase; Provi 98.8 1.1E-08 2.4E-13 91.3 8.4 123 50-175 2-169 (400)
165 PF00890 FAD_binding_2: FAD bi 98.8 1.1E-08 2.4E-13 91.9 8.3 57 248-305 140-201 (417)
166 PLN02487 zeta-carotene desatur 98.8 2.1E-08 4.5E-13 92.4 10.1 58 248-305 294-358 (569)
167 TIGR00275 flavoprotein, HI0933 98.8 5.1E-08 1.1E-12 86.9 12.3 79 223-305 79-158 (400)
168 PLN02268 probable polyamine ox 98.8 6.6E-08 1.4E-12 87.4 13.0 36 52-90 1-36 (435)
169 PRK07494 2-octaprenyl-6-methox 98.8 2.3E-08 5E-13 89.0 9.8 37 49-88 5-41 (388)
170 COG2509 Uncharacterized FAD-de 98.8 3.2E-07 6.9E-12 79.7 16.0 58 247-305 171-228 (486)
171 PF13454 NAD_binding_9: FAD-NA 98.8 6.9E-08 1.5E-12 74.4 10.9 34 55-88 1-36 (156)
172 PRK05714 2-octaprenyl-3-methyl 98.8 1.5E-08 3.2E-13 90.8 8.1 122 51-175 2-169 (405)
173 PRK07364 2-octaprenyl-6-methox 98.8 1.6E-08 3.5E-13 90.8 8.4 36 51-89 18-53 (415)
174 PTZ00363 rab-GDP dissociation 98.8 1.1E-07 2.5E-12 85.1 13.4 57 248-304 231-287 (443)
175 PRK06481 fumarate reductase fl 98.8 1.5E-07 3.3E-12 86.5 14.5 55 249-304 190-248 (506)
176 PRK05868 hypothetical protein; 98.8 2.7E-08 5.9E-13 87.9 9.3 122 51-175 1-161 (372)
177 COG2907 Predicted NAD/FAD-bind 98.8 1.7E-07 3.7E-12 78.5 13.2 65 236-304 206-270 (447)
178 PRK08132 FAD-dependent oxidore 98.8 3.4E-08 7.3E-13 91.8 10.2 38 48-88 20-57 (547)
179 PRK08849 2-octaprenyl-3-methyl 98.8 2.1E-08 4.6E-13 89.1 8.5 122 51-175 3-168 (384)
180 TIGR01292 TRX_reduct thioredox 98.8 1.3E-07 2.9E-12 80.9 13.2 94 209-305 2-110 (300)
181 PRK07588 hypothetical protein; 98.8 6E-08 1.3E-12 86.4 10.6 121 52-175 1-159 (391)
182 PRK08850 2-octaprenyl-6-methox 98.8 3.6E-08 7.7E-13 88.3 9.0 35 49-86 2-36 (405)
183 PF04820 Trp_halogenase: Trypt 98.8 4.7E-08 1E-12 88.3 9.8 56 249-305 154-209 (454)
184 PRK05732 2-octaprenyl-6-methox 98.7 2.1E-08 4.6E-13 89.4 7.3 35 49-86 1-38 (395)
185 PLN02464 glycerol-3-phosphate 98.7 1.7E-07 3.7E-12 88.0 13.3 58 248-305 231-294 (627)
186 PRK06185 hypothetical protein; 98.7 3.8E-08 8.2E-13 88.2 8.6 37 49-88 4-40 (407)
187 PF03486 HI0933_like: HI0933-l 98.7 1.3E-07 2.8E-12 83.9 11.6 96 209-305 2-164 (409)
188 PRK06753 hypothetical protein; 98.7 8.2E-08 1.8E-12 85.0 10.4 118 53-174 2-152 (373)
189 PF01494 FAD_binding_3: FAD bi 98.7 4.2E-09 9.1E-14 92.3 2.2 35 52-89 2-36 (356)
190 KOG2820 FAD-dependent oxidored 98.7 1.5E-07 3.3E-12 78.5 11.1 57 248-304 152-209 (399)
191 TIGR01988 Ubi-OHases Ubiquinon 98.7 6.1E-08 1.3E-12 86.1 9.4 120 53-175 1-164 (385)
192 TIGR01984 UbiH 2-polyprenyl-6- 98.7 2.8E-08 6.1E-13 88.3 7.2 119 53-174 1-162 (382)
193 PRK12266 glpD glycerol-3-phosp 98.7 1.5E-07 3.3E-12 86.5 12.1 56 248-305 154-214 (508)
194 TIGR01789 lycopene_cycl lycope 98.7 7E-08 1.5E-12 85.0 9.4 115 53-175 1-139 (370)
195 PRK06126 hypothetical protein; 98.7 8.8E-08 1.9E-12 89.1 10.4 37 49-88 5-41 (545)
196 PRK11445 putative oxidoreducta 98.7 9.4E-08 2E-12 83.8 9.9 34 51-88 1-34 (351)
197 COG3349 Uncharacterized conser 98.7 1.4E-08 3E-13 89.8 4.5 36 52-90 1-36 (485)
198 TIGR02023 BchP-ChlP geranylger 98.7 6.3E-08 1.4E-12 86.2 8.6 32 52-86 1-32 (388)
199 COG3075 GlpB Anaerobic glycero 98.7 1E-06 2.2E-11 73.5 14.6 65 240-305 249-315 (421)
200 PRK09078 sdhA succinate dehydr 98.7 6.4E-07 1.4E-11 83.9 15.2 57 249-305 149-210 (598)
201 KOG2415 Electron transfer flav 98.7 3.4E-07 7.4E-12 78.5 11.8 55 250-304 184-253 (621)
202 PRK13369 glycerol-3-phosphate 98.7 6.4E-08 1.4E-12 88.9 8.0 56 248-305 154-213 (502)
203 PLN02676 polyamine oxidase 98.7 1.9E-07 4.1E-12 85.2 10.7 40 49-90 24-63 (487)
204 PRK07251 pyridine nucleotide-d 98.6 1.6E-07 3.5E-12 84.9 10.0 98 51-176 157-255 (438)
205 TIGR01989 COQ6 Ubiquinone bios 98.6 8.2E-08 1.8E-12 86.8 8.0 33 52-87 1-37 (437)
206 PRK07057 sdhA succinate dehydr 98.6 1.2E-06 2.6E-11 81.9 15.9 57 249-305 148-209 (591)
207 PRK07121 hypothetical protein; 98.6 7.1E-07 1.5E-11 81.9 14.1 58 248-305 176-237 (492)
208 PF12831 FAD_oxidored: FAD dep 98.6 2.5E-08 5.4E-13 89.7 4.3 116 53-171 1-147 (428)
209 COG3380 Predicted NAD/FAD-depe 98.6 1E-07 2.2E-12 77.2 7.1 36 52-90 2-37 (331)
210 TIGR03385 CoA_CoA_reduc CoA-di 98.6 2E-07 4.3E-12 84.1 9.9 98 51-175 137-234 (427)
211 PRK06617 2-octaprenyl-6-methox 98.6 1.2E-07 2.5E-12 84.1 8.1 33 51-86 1-33 (374)
212 PRK04965 NADH:flavorubredoxin 98.6 2.2E-07 4.8E-12 82.4 9.8 98 51-175 141-240 (377)
213 PF13738 Pyr_redox_3: Pyridine 98.6 4.4E-07 9.4E-12 73.1 10.7 93 211-305 1-136 (203)
214 PLN00128 Succinate dehydrogena 98.6 1.8E-06 3.8E-11 81.2 16.0 58 248-305 186-248 (635)
215 PRK06996 hypothetical protein; 98.6 1.1E-07 2.4E-12 84.9 7.6 125 48-172 8-172 (398)
216 PF13450 NAD_binding_8: NAD(P) 98.6 6.5E-08 1.4E-12 63.0 4.5 32 56-90 1-32 (68)
217 PRK12843 putative FAD-binding 98.6 3.7E-07 7.9E-12 85.2 11.2 57 248-305 220-280 (578)
218 PRK08401 L-aspartate oxidase; 98.6 3E-07 6.5E-12 83.7 10.3 35 51-88 1-35 (466)
219 PLN02661 Putative thiazole syn 98.6 2E-07 4.4E-12 80.0 8.5 36 51-89 92-128 (357)
220 TIGR01813 flavo_cyto_c flavocy 98.6 1.6E-06 3.4E-11 78.5 14.8 58 248-305 129-190 (439)
221 PRK06912 acoL dihydrolipoamide 98.6 2.3E-07 4.9E-12 84.4 9.3 98 51-176 170-270 (458)
222 PRK09754 phenylpropionate diox 98.6 2.5E-07 5.4E-12 82.5 9.2 98 51-175 144-242 (396)
223 PRK05192 tRNA uridine 5-carbox 98.6 2.2E-07 4.8E-12 85.4 8.8 35 50-87 3-37 (618)
224 KOG2665 Predicted FAD-dependen 98.6 9.8E-07 2.1E-11 73.2 11.6 202 48-306 45-256 (453)
225 PRK06416 dihydrolipoamide dehy 98.6 2.8E-07 6.1E-12 83.9 9.5 98 51-176 172-274 (462)
226 TIGR01350 lipoamide_DH dihydro 98.6 3.1E-07 6.7E-12 83.7 9.7 98 51-176 170-271 (461)
227 COG0578 GlpA Glycerol-3-phosph 98.6 4.7E-07 1E-11 81.6 10.5 56 248-305 163-223 (532)
228 PTZ00139 Succinate dehydrogena 98.6 3.5E-06 7.5E-11 79.2 16.5 58 248-305 165-227 (617)
229 PRK12839 hypothetical protein; 98.6 2.9E-06 6.3E-11 79.0 15.8 58 248-305 213-274 (572)
230 PRK08205 sdhA succinate dehydr 98.6 3.1E-06 6.8E-11 79.1 16.0 58 248-305 139-204 (583)
231 PRK07573 sdhA succinate dehydr 98.6 7.1E-07 1.5E-11 84.1 11.7 53 252-305 173-230 (640)
232 COG1249 Lpd Pyruvate/2-oxoglut 98.5 4.6E-07 1E-11 81.1 9.7 99 50-176 172-274 (454)
233 PRK08243 4-hydroxybenzoate 3-m 98.5 3E-07 6.5E-12 82.0 8.6 35 51-88 2-36 (392)
234 PRK13512 coenzyme A disulfide 98.5 4E-07 8.6E-12 82.3 9.5 95 51-175 148-242 (438)
235 PRK06116 glutathione reductase 98.5 4.3E-07 9.2E-12 82.5 9.7 98 51-176 167-267 (450)
236 TIGR01812 sdhA_frdA_Gneg succi 98.5 2.8E-06 6.1E-11 79.4 15.3 56 249-305 129-189 (566)
237 PRK05976 dihydrolipoamide dehy 98.5 4.5E-07 9.8E-12 82.8 9.8 98 51-176 180-283 (472)
238 PRK05249 soluble pyridine nucl 98.5 4.9E-07 1.1E-11 82.4 9.9 98 51-176 175-274 (461)
239 PRK12845 3-ketosteroid-delta-1 98.5 1.8E-06 3.9E-11 80.1 13.7 57 248-305 216-276 (564)
240 TIGR02028 ChlP geranylgeranyl 98.5 4.7E-07 1E-11 80.8 9.5 34 52-88 1-34 (398)
241 TIGR02360 pbenz_hydroxyl 4-hyd 98.5 2E-07 4.4E-12 82.9 7.0 35 51-88 2-36 (390)
242 PF01946 Thi4: Thi4 family; PD 98.5 8.8E-08 1.9E-12 75.6 4.1 38 50-90 16-53 (230)
243 TIGR03219 salicylate_mono sali 98.5 1E-06 2.2E-11 79.1 11.6 34 53-89 2-36 (414)
244 COG1231 Monoamine oxidase [Ami 98.5 7.3E-07 1.6E-11 77.8 10.0 39 49-90 5-43 (450)
245 TIGR01424 gluta_reduc_2 glutat 98.5 5.4E-07 1.2E-11 81.7 9.7 98 51-176 166-265 (446)
246 PRK06475 salicylate hydroxylas 98.5 4.1E-07 8.8E-12 81.3 8.8 34 52-88 3-36 (400)
247 TIGR01421 gluta_reduc_1 glutat 98.5 6E-07 1.3E-11 81.4 9.7 98 51-176 166-267 (450)
248 PRK08958 sdhA succinate dehydr 98.5 4.6E-06 1E-10 78.0 15.6 58 248-305 142-204 (588)
249 PRK06452 sdhA succinate dehydr 98.5 4.7E-06 1E-10 77.7 15.5 56 249-305 136-196 (566)
250 KOG2844 Dimethylglycine dehydr 98.5 2.1E-06 4.5E-11 77.9 12.3 69 232-305 173-241 (856)
251 PRK07845 flavoprotein disulfid 98.5 9.1E-07 2E-11 80.6 10.0 98 51-176 177-276 (466)
252 PRK07846 mycothione reductase; 98.5 8.8E-07 1.9E-11 80.3 9.8 97 51-176 166-264 (451)
253 PF01134 GIDA: Glucose inhibit 98.5 2.4E-06 5.1E-11 74.6 11.9 95 209-305 1-150 (392)
254 TIGR03140 AhpF alkyl hydropero 98.5 3.6E-06 7.9E-11 77.6 13.7 97 207-305 212-321 (515)
255 PRK06263 sdhA succinate dehydr 98.5 7.6E-06 1.6E-10 76.0 15.9 58 248-305 133-195 (543)
256 PRK06370 mercuric reductase; V 98.5 9.5E-07 2E-11 80.5 9.8 98 51-176 171-273 (463)
257 TIGR02053 MerA mercuric reduct 98.5 9.1E-07 2E-11 80.6 9.6 98 51-176 166-268 (463)
258 PLN02507 glutathione reductase 98.5 1.1E-06 2.3E-11 80.7 9.9 98 51-176 203-302 (499)
259 PRK15317 alkyl hydroperoxide r 98.5 3.6E-06 7.9E-11 77.7 13.4 97 207-305 211-320 (517)
260 PLN00093 geranylgeranyl diphos 98.4 3.6E-07 7.8E-12 82.5 6.5 38 48-88 36-73 (450)
261 PRK06069 sdhA succinate dehydr 98.4 1E-05 2.2E-10 75.8 16.3 57 248-305 136-198 (577)
262 PLN02172 flavin-containing mon 98.4 3.5E-06 7.7E-11 76.3 12.9 97 207-305 10-171 (461)
263 PRK08071 L-aspartate oxidase; 98.4 2.2E-06 4.8E-11 78.8 11.7 55 249-305 130-188 (510)
264 PRK06327 dihydrolipoamide dehy 98.4 1E-06 2.3E-11 80.4 9.4 98 51-176 183-286 (475)
265 PRK07818 dihydrolipoamide dehy 98.4 1.1E-06 2.3E-11 80.2 9.4 98 51-176 172-275 (466)
266 PRK08275 putative oxidoreducta 98.4 9.5E-06 2.1E-10 75.5 15.8 58 248-305 136-198 (554)
267 PRK06175 L-aspartate oxidase; 98.4 9.1E-07 2E-11 79.7 8.9 36 50-89 3-38 (433)
268 PRK07538 hypothetical protein; 98.4 6.7E-07 1.4E-11 80.3 7.8 34 52-88 1-34 (413)
269 PRK06847 hypothetical protein; 98.4 5.7E-06 1.2E-10 73.3 13.5 97 207-305 4-161 (375)
270 PRK06115 dihydrolipoamide dehy 98.4 1.3E-06 2.7E-11 79.7 9.4 99 50-176 173-278 (466)
271 PRK04176 ribulose-1,5-biphosph 98.4 6.9E-06 1.5E-10 68.6 12.9 99 207-305 25-171 (257)
272 TIGR02374 nitri_red_nirB nitri 98.4 1.1E-06 2.4E-11 84.7 9.4 99 51-176 140-240 (785)
273 PRK08294 phenol 2-monooxygenas 98.4 1.1E-06 2.5E-11 82.6 9.1 37 49-88 30-67 (634)
274 PRK14694 putative mercuric red 98.4 1.5E-06 3.2E-11 79.3 9.5 96 51-176 178-275 (468)
275 PRK05945 sdhA succinate dehydr 98.4 1.6E-06 3.5E-11 81.0 9.8 38 50-88 2-39 (575)
276 PRK06854 adenylylsulfate reduc 98.4 1.7E-05 3.7E-10 74.5 16.4 57 248-305 131-193 (608)
277 KOG4254 Phytoene desaturase [C 98.4 9E-07 2E-11 76.7 7.2 55 248-303 263-317 (561)
278 PF01134 GIDA: Glucose inhibit 98.4 5.1E-07 1.1E-11 78.7 5.8 116 53-172 1-150 (392)
279 TIGR01423 trypano_reduc trypan 98.4 1.8E-06 3.9E-11 78.8 9.6 98 51-176 187-290 (486)
280 TIGR00551 nadB L-aspartate oxi 98.4 9E-06 2E-10 74.5 14.0 57 248-305 127-187 (488)
281 PRK14989 nitrite reductase sub 98.4 1.6E-06 3.5E-11 83.9 9.2 99 51-176 145-247 (847)
282 PRK07804 L-aspartate oxidase; 98.4 2.1E-06 4.5E-11 79.6 9.6 36 50-88 15-50 (541)
283 PRK08010 pyridine nucleotide-d 98.4 2.3E-06 5E-11 77.5 9.7 97 51-176 158-256 (441)
284 KOG1336 Monodehydroascorbate/f 98.3 1.7E-06 3.6E-11 75.8 7.9 99 51-176 213-315 (478)
285 TIGR00292 thiazole biosynthesi 98.3 1.7E-05 3.8E-10 66.0 13.5 99 207-305 21-168 (254)
286 TIGR03452 mycothione_red mycot 98.3 3.2E-06 6.9E-11 76.7 9.8 97 51-176 169-267 (452)
287 PTZ00052 thioredoxin reductase 98.3 3.2E-06 6.9E-11 77.6 9.8 97 51-176 182-280 (499)
288 PTZ00058 glutathione reductase 98.3 3.5E-06 7.6E-11 78.0 9.9 97 51-175 237-337 (561)
289 PRK09564 coenzyme A disulfide 98.3 7.2E-06 1.6E-10 74.4 11.4 95 209-305 2-113 (444)
290 TIGR02032 GG-red-SF geranylger 98.3 1.4E-05 3.1E-10 68.1 12.6 95 209-305 2-146 (295)
291 TIGR03169 Nterm_to_SelD pyridi 98.3 5.6E-06 1.2E-10 73.1 10.0 92 209-305 1-105 (364)
292 PF07992 Pyr_redox_2: Pyridine 98.3 4.5E-06 9.7E-11 67.0 8.6 96 209-305 1-120 (201)
293 PTZ00318 NADH dehydrogenase-li 98.3 8.2E-06 1.8E-10 73.5 11.1 97 206-305 9-123 (424)
294 PRK07512 L-aspartate oxidase; 98.3 2E-05 4.4E-10 72.6 13.8 57 248-305 135-195 (513)
295 TIGR02485 CobZ_N-term precorri 98.3 1.8E-05 3.8E-10 71.6 13.1 58 248-305 122-181 (432)
296 PRK13748 putative mercuric red 98.3 3.9E-06 8.4E-11 78.4 9.1 96 51-176 270-367 (561)
297 TIGR01811 sdhA_Bsu succinate d 98.3 4.5E-05 9.9E-10 71.6 16.0 56 250-305 130-194 (603)
298 KOG2852 Possible oxidoreductas 98.3 1.8E-06 3.9E-11 70.7 5.8 57 48-105 7-66 (380)
299 COG0446 HcaD Uncharacterized N 98.3 3.9E-06 8.5E-11 75.2 8.6 98 51-175 136-238 (415)
300 TIGR01438 TGR thioredoxin and 98.3 5.6E-06 1.2E-10 75.7 9.5 97 51-176 180-281 (484)
301 PRK06292 dihydrolipoamide dehy 98.2 5E-06 1.1E-10 75.8 9.1 98 50-176 168-270 (460)
302 TIGR00136 gidA glucose-inhibit 98.2 7.5E-06 1.6E-10 75.4 10.1 33 52-87 1-33 (617)
303 PTZ00306 NADH-dependent fumara 98.2 5.5E-05 1.2E-09 76.2 17.1 37 50-89 408-444 (1167)
304 PRK06467 dihydrolipoamide dehy 98.2 6.2E-06 1.3E-10 75.3 9.4 97 51-176 174-276 (471)
305 PRK14727 putative mercuric red 98.2 4.8E-06 1E-10 76.2 8.6 96 51-176 188-285 (479)
306 COG1252 Ndh NADH dehydrogenase 98.2 9.4E-06 2E-10 71.2 9.7 94 207-305 3-109 (405)
307 PLN02463 lycopene beta cyclase 98.2 2.5E-05 5.5E-10 70.4 12.7 95 208-305 29-167 (447)
308 PF00743 FMO-like: Flavin-bind 98.2 2E-05 4.4E-10 72.5 12.0 97 208-305 2-148 (531)
309 PRK12770 putative glutamate sy 98.2 6.2E-06 1.3E-10 72.4 8.4 100 205-305 16-128 (352)
310 PLN02546 glutathione reductase 98.2 9.6E-06 2.1E-10 75.1 9.7 99 50-176 251-352 (558)
311 PRK06834 hypothetical protein; 98.2 5.1E-05 1.1E-09 69.5 13.7 96 208-305 4-154 (488)
312 PRK09231 fumarate reductase fl 98.1 1.3E-05 2.8E-10 74.9 9.6 37 51-88 4-40 (582)
313 PTZ00153 lipoamide dehydrogena 98.1 1.4E-05 2.9E-10 75.3 9.3 98 51-176 312-429 (659)
314 PF06039 Mqo: Malate:quinone o 98.1 0.00012 2.7E-09 64.5 14.4 55 249-304 181-241 (488)
315 PRK10157 putative oxidoreducta 98.1 6.8E-05 1.5E-09 67.6 13.4 95 209-305 7-162 (428)
316 PRK08244 hypothetical protein; 98.1 6.9E-05 1.5E-09 69.0 13.3 98 208-305 3-157 (493)
317 PRK09853 putative selenate red 98.1 2.7E-05 5.8E-10 75.8 10.9 88 206-305 538-633 (1019)
318 PRK07333 2-octaprenyl-6-methox 98.1 8.1E-05 1.8E-09 66.6 13.4 95 209-305 3-165 (403)
319 TIGR00031 UDP-GALP_mutase UDP- 98.1 5E-06 1.1E-10 72.9 5.2 36 52-90 2-37 (377)
320 PRK12779 putative bifunctional 98.1 1.7E-05 3.8E-10 77.7 9.4 90 206-305 305-402 (944)
321 KOG2853 Possible oxidoreductas 98.1 6E-05 1.3E-09 63.5 11.1 53 51-103 86-139 (509)
322 PRK07236 hypothetical protein; 98.1 4.9E-05 1.1E-09 67.7 11.5 97 207-305 6-152 (386)
323 TIGR01176 fum_red_Fp fumarate 98.1 1.9E-05 4.1E-10 73.7 9.2 37 51-88 3-39 (580)
324 PRK10262 thioredoxin reductase 98.1 0.0001 2.2E-09 63.9 13.3 96 206-305 5-115 (321)
325 PLN02568 polyamine oxidase 98.1 5.7E-06 1.2E-10 76.4 5.6 42 49-90 3-46 (539)
326 PRK11749 dihydropyrimidine deh 98.1 1.6E-05 3.4E-10 72.4 8.3 89 206-305 139-235 (457)
327 PLN02529 lysine-specific histo 98.1 7.3E-06 1.6E-10 77.6 6.2 56 26-90 141-196 (738)
328 PRK05192 tRNA uridine 5-carbox 98.1 6.5E-05 1.4E-09 69.4 12.1 95 209-305 6-155 (618)
329 PLN02985 squalene monooxygenas 98.0 6.9E-06 1.5E-10 75.5 5.3 37 48-87 40-76 (514)
330 PRK06184 hypothetical protein; 98.0 0.00012 2.6E-09 67.6 13.2 96 208-305 4-166 (502)
331 PRK07588 hypothetical protein; 98.0 0.00011 2.4E-09 65.5 12.6 94 209-305 2-156 (391)
332 PRK05335 tRNA (uracil-5-)-meth 98.0 7.8E-06 1.7E-10 72.2 5.0 35 51-88 2-36 (436)
333 PRK10015 oxidoreductase; Provi 98.0 0.00015 3.2E-09 65.4 13.2 95 209-305 7-162 (429)
334 TIGR01984 UbiH 2-polyprenyl-6- 98.0 0.00015 3.3E-09 64.4 13.1 95 209-305 1-160 (382)
335 KOG1276 Protoporphyrinogen oxi 98.0 1.2E-05 2.6E-10 69.5 5.5 53 50-103 10-64 (491)
336 PLN02697 lycopene epsilon cycl 98.0 0.00014 2.9E-09 66.9 12.7 96 208-305 109-246 (529)
337 PTZ00367 squalene epoxidase; P 98.0 9.3E-06 2E-10 75.2 5.1 35 50-87 32-66 (567)
338 PRK07190 hypothetical protein; 98.0 0.00017 3.6E-09 66.1 13.2 96 208-305 6-163 (487)
339 KOG0685 Flavin-containing amin 98.0 1.2E-05 2.5E-10 70.6 5.2 39 50-90 20-58 (498)
340 TIGR03143 AhpF_homolog putativ 98.0 0.00015 3.2E-09 67.6 13.0 93 208-305 5-112 (555)
341 PRK05868 hypothetical protein; 98.0 0.00017 3.6E-09 63.9 12.7 96 208-305 2-158 (372)
342 PRK05714 2-octaprenyl-3-methyl 98.0 0.00014 3.1E-09 65.1 12.5 95 209-305 4-166 (405)
343 PRK07608 ubiquinone biosynthes 98.0 0.00021 4.5E-09 63.6 13.4 95 208-305 6-165 (388)
344 TIGR01316 gltA glutamate synth 98.0 2.8E-05 6E-10 70.6 7.8 89 206-305 132-228 (449)
345 TIGR01790 carotene-cycl lycope 98.0 0.00016 3.4E-09 64.5 12.5 95 209-305 1-139 (388)
346 TIGR01988 Ubi-OHases Ubiquinon 97.9 0.00022 4.7E-09 63.4 13.4 95 209-305 1-161 (385)
347 PLN02927 antheraxanthin epoxid 97.9 1E-05 2.2E-10 75.7 5.0 36 49-87 79-114 (668)
348 PF13454 NAD_binding_9: FAD-NA 97.9 0.00018 3.8E-09 55.4 11.1 42 263-306 114-156 (156)
349 COG0492 TrxB Thioredoxin reduc 97.9 0.00019 4.1E-09 61.3 12.2 94 208-305 4-113 (305)
350 TIGR00136 gidA glucose-inhibit 97.9 0.00017 3.8E-09 66.6 12.5 96 209-305 2-152 (617)
351 COG1635 THI4 Ribulose 1,5-bisp 97.9 0.00025 5.5E-09 56.2 11.6 99 207-305 30-176 (262)
352 PRK07364 2-octaprenyl-6-methox 97.9 0.00023 5.1E-09 63.9 12.8 96 208-305 19-179 (415)
353 PRK09126 hypothetical protein; 97.9 0.0003 6.6E-09 62.7 13.3 96 208-305 4-165 (392)
354 PRK06183 mhpA 3-(3-hydroxyphen 97.9 0.00025 5.4E-09 66.0 13.1 99 207-305 10-172 (538)
355 KOG2495 NADH-dehydrogenase (ub 97.9 5.3E-06 1.2E-10 71.7 1.7 101 51-176 218-331 (491)
356 PRK09897 hypothetical protein; 97.9 0.00031 6.8E-09 64.6 13.2 96 208-305 2-164 (534)
357 PF12831 FAD_oxidored: FAD dep 97.9 1.6E-05 3.5E-10 71.6 4.8 96 209-305 1-148 (428)
358 COG0493 GltD NADPH-dependent g 97.9 4.6E-05 1E-09 68.5 7.4 88 206-305 122-218 (457)
359 COG0644 FixC Dehydrogenases (f 97.9 0.00031 6.6E-09 62.8 12.6 96 209-305 5-150 (396)
360 PRK01438 murD UDP-N-acetylmura 97.9 4.7E-05 1E-09 69.8 7.6 77 51-176 16-92 (480)
361 PF01494 FAD_binding_3: FAD bi 97.9 0.00025 5.4E-09 62.0 12.0 97 209-305 3-170 (356)
362 KOG2614 Kynurenine 3-monooxyge 97.9 2.1E-05 4.5E-10 68.0 4.9 36 51-89 2-37 (420)
363 PRK06753 hypothetical protein; 97.9 0.00023 5E-09 63.0 11.7 95 209-305 2-150 (373)
364 PRK12831 putative oxidoreducta 97.9 5.6E-05 1.2E-09 68.8 7.9 90 206-305 139-238 (464)
365 KOG2404 Fumarate reductase, fl 97.8 0.00016 3.4E-09 60.6 9.7 42 263-305 159-204 (477)
366 TIGR01318 gltD_gamma_fam gluta 97.8 6.5E-05 1.4E-09 68.5 8.3 89 206-305 140-236 (467)
367 PRK08020 ubiF 2-octaprenyl-3-m 97.8 0.0004 8.6E-09 61.9 13.2 96 208-305 6-167 (391)
368 KOG1399 Flavin-containing mono 97.8 0.00027 5.8E-09 63.4 11.8 98 207-305 6-151 (448)
369 PLN02852 ferredoxin-NADP+ redu 97.8 8.1E-05 1.8E-09 67.6 8.5 89 206-305 25-124 (491)
370 COG0562 Glf UDP-galactopyranos 97.8 2.9E-05 6.2E-10 64.9 4.9 37 51-90 1-37 (374)
371 PRK08013 oxidoreductase; Provi 97.8 0.00042 9E-09 62.0 12.8 96 208-305 4-166 (400)
372 PRK08641 sdhA succinate dehydr 97.8 2.4E-05 5.1E-10 73.3 4.9 36 50-88 2-37 (589)
373 COG0029 NadB Aspartate oxidase 97.8 3.1E-05 6.6E-10 68.5 5.3 33 53-89 9-41 (518)
374 PLN02328 lysine-specific histo 97.8 3.1E-05 6.6E-10 74.0 5.6 39 49-90 236-274 (808)
375 KOG1335 Dihydrolipoamide dehyd 97.8 4.1E-05 8.9E-10 65.4 5.7 97 51-175 211-315 (506)
376 PRK08132 FAD-dependent oxidore 97.8 0.00045 9.8E-09 64.5 13.2 99 207-305 23-183 (547)
377 PRK12778 putative bifunctional 97.8 8.2E-05 1.8E-09 71.9 8.4 90 206-305 430-527 (752)
378 PF05834 Lycopene_cycl: Lycope 97.8 0.00031 6.8E-09 62.2 11.4 93 210-305 2-140 (374)
379 PRK06185 hypothetical protein; 97.8 0.00061 1.3E-08 61.1 13.4 98 207-305 6-167 (407)
380 COG2072 TrkA Predicted flavopr 97.8 0.00056 1.2E-08 61.9 12.9 99 207-305 8-142 (443)
381 COG0445 GidA Flavin-dependent 97.8 4E-05 8.6E-10 68.6 5.3 35 50-87 3-37 (621)
382 PF00732 GMC_oxred_N: GMC oxid 97.8 2.1E-05 4.6E-10 67.3 3.4 36 52-89 1-36 (296)
383 TIGR01317 GOGAT_sm_gam glutama 97.7 0.00012 2.5E-09 67.1 8.2 89 206-305 142-238 (485)
384 PRK07494 2-octaprenyl-6-methox 97.7 0.00068 1.5E-08 60.4 12.9 95 208-305 8-165 (388)
385 PRK12775 putative trifunctiona 97.7 0.00015 3.2E-09 71.9 8.7 89 207-305 430-527 (1006)
386 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 4.7E-05 1E-09 67.7 4.8 34 52-88 1-34 (433)
387 PRK12837 3-ketosteroid-delta-1 97.7 5.4E-05 1.2E-09 69.9 5.2 35 50-88 6-40 (513)
388 PRK06475 salicylate hydroxylas 97.7 0.00095 2E-08 59.8 13.0 96 208-305 3-165 (400)
389 PRK12834 putative FAD-binding 97.7 5.6E-05 1.2E-09 70.4 5.1 35 50-87 3-37 (549)
390 TIGR01372 soxA sarcosine oxida 97.7 0.00076 1.6E-08 67.1 13.2 97 207-305 163-284 (985)
391 TIGR03315 Se_ygfK putative sel 97.7 0.00023 5E-09 69.8 9.4 87 207-305 537-631 (1012)
392 PF01946 Thi4: Thi4 family; PD 97.7 0.00074 1.6E-08 53.8 10.5 99 207-305 17-163 (230)
393 KOG0404 Thioredoxin reductase 97.7 0.00047 1E-08 54.8 9.3 95 207-305 8-122 (322)
394 PRK12810 gltD glutamate syntha 97.7 0.00017 3.8E-09 65.8 8.0 89 206-305 142-238 (471)
395 PRK08849 2-octaprenyl-3-methyl 97.7 0.0012 2.5E-08 58.9 13.0 95 209-305 5-165 (384)
396 PRK12809 putative oxidoreducta 97.6 0.00019 4.1E-09 68.1 8.3 89 206-305 309-405 (639)
397 PRK08850 2-octaprenyl-6-methox 97.6 0.00099 2.1E-08 59.7 12.5 96 208-305 5-166 (405)
398 TIGR03219 salicylate_mono sali 97.6 0.00088 1.9E-08 60.3 11.9 95 209-305 2-157 (414)
399 PRK07803 sdhA succinate dehydr 97.6 8.4E-05 1.8E-09 70.2 5.5 36 50-88 7-42 (626)
400 PRK05732 2-octaprenyl-6-methox 97.6 0.0017 3.7E-08 57.9 13.4 96 208-305 4-167 (395)
401 PRK06617 2-octaprenyl-6-methox 97.6 0.0014 3.1E-08 58.1 12.7 94 209-305 3-158 (374)
402 PRK12835 3-ketosteroid-delta-1 97.6 9.6E-05 2.1E-09 69.2 5.4 37 50-89 10-46 (584)
403 PLN02661 Putative thiazole syn 97.6 0.0016 3.5E-08 56.3 12.3 97 208-305 93-242 (357)
404 PRK12844 3-ketosteroid-delta-1 97.6 0.00011 2.3E-09 68.5 5.4 57 248-305 207-267 (557)
405 PRK08255 salicylyl-CoA 5-hydro 97.6 8.2E-05 1.8E-09 71.9 4.7 33 53-88 2-36 (765)
406 PRK08626 fumarate reductase fl 97.6 9E-05 2E-09 70.2 4.8 35 51-88 5-39 (657)
407 TIGR01789 lycopene_cycl lycope 97.5 0.00068 1.5E-08 59.9 9.9 90 210-305 2-136 (370)
408 PRK12814 putative NADPH-depend 97.5 0.00032 6.9E-09 66.6 8.3 89 206-305 192-288 (652)
409 PF06100 Strep_67kDa_ant: Stre 97.5 0.0012 2.6E-08 59.1 11.1 40 51-90 2-42 (500)
410 PRK02106 choline dehydrogenase 97.5 0.00011 2.5E-09 68.6 5.2 37 49-88 3-40 (560)
411 PRK08243 4-hydroxybenzoate 3-m 97.5 0.0023 5E-08 57.1 13.1 97 208-305 3-161 (392)
412 PRK12769 putative oxidoreducta 97.5 0.00034 7.4E-09 66.6 8.1 89 206-305 326-422 (654)
413 PRK06996 hypothetical protein; 97.5 0.0017 3.7E-08 58.1 12.1 96 207-304 11-171 (398)
414 PRK06126 hypothetical protein; 97.5 0.0022 4.7E-08 59.9 13.2 99 207-305 7-186 (545)
415 PRK08401 L-aspartate oxidase; 97.5 0.0023 5E-08 58.4 12.9 95 208-305 2-173 (466)
416 TIGR02462 pyranose_ox pyranose 97.5 0.00014 3.1E-09 66.8 4.9 36 52-90 1-36 (544)
417 COG0445 GidA Flavin-dependent 97.5 0.00044 9.5E-09 62.1 7.6 96 209-305 6-156 (621)
418 PRK07395 L-aspartate oxidase; 97.4 0.00015 3.3E-09 67.4 4.6 36 49-88 7-42 (553)
419 TIGR02061 aprA adenosine phosp 97.4 0.00015 3.2E-09 68.0 4.5 33 53-88 1-37 (614)
420 KOG1298 Squalene monooxygenase 97.4 0.00018 4E-09 61.6 4.4 37 49-88 43-79 (509)
421 KOG0042 Glycerol-3-phosphate d 97.4 1.1E-05 2.4E-10 71.7 -3.0 87 215-305 194-285 (680)
422 TIGR02023 BchP-ChlP geranylger 97.4 0.0038 8.3E-08 55.6 13.0 94 209-305 2-153 (388)
423 PLN03000 amine oxidase 97.4 0.00025 5.4E-09 68.1 5.6 38 50-90 183-220 (881)
424 PRK07538 hypothetical protein; 97.4 0.0037 8.1E-08 56.2 12.9 97 209-305 2-163 (413)
425 PRK07804 L-aspartate oxidase; 97.4 0.0035 7.6E-08 58.3 12.8 55 251-305 146-208 (541)
426 PRK09077 L-aspartate oxidase; 97.4 0.00024 5.1E-09 66.0 5.0 35 50-88 7-41 (536)
427 PLN02815 L-aspartate oxidase 97.4 0.00024 5.1E-09 66.5 4.9 35 50-88 28-62 (594)
428 KOG2960 Protein involved in th 97.3 5.3E-05 1.1E-09 59.5 0.4 37 52-89 77-113 (328)
429 COG1053 SdhA Succinate dehydro 97.3 0.00025 5.5E-09 65.6 4.8 38 49-89 4-41 (562)
430 PRK06175 L-aspartate oxidase; 97.3 0.0044 9.5E-08 56.1 12.6 54 251-305 130-187 (433)
431 PRK13984 putative oxidoreducta 97.3 0.00069 1.5E-08 64.0 7.6 89 206-305 282-378 (604)
432 PLN02785 Protein HOTHEAD 97.3 0.0004 8.7E-09 64.9 5.9 35 50-88 54-88 (587)
433 TIGR01989 COQ6 Ubiquinone bios 97.3 0.0058 1.3E-07 55.4 12.9 97 209-305 2-181 (437)
434 PRK11445 putative oxidoreducta 97.3 0.0086 1.9E-07 52.6 13.6 93 209-305 3-155 (351)
435 TIGR02360 pbenz_hydroxyl 4-hyd 97.3 0.006 1.3E-07 54.4 12.7 97 208-305 3-161 (390)
436 PRK13800 putative oxidoreducta 97.3 0.0003 6.4E-09 69.3 4.7 36 50-88 12-47 (897)
437 COG1251 NirB NAD(P)H-nitrite r 97.2 0.0022 4.8E-08 59.7 9.6 94 208-305 4-111 (793)
438 COG3573 Predicted oxidoreducta 97.2 0.00047 1E-08 58.1 4.8 37 49-88 3-39 (552)
439 PLN02976 amine oxidase 97.2 0.00049 1.1E-08 69.0 5.4 37 51-90 693-729 (1713)
440 PRK01438 murD UDP-N-acetylmura 97.2 0.0021 4.6E-08 59.0 9.3 74 206-305 15-88 (480)
441 TIGR02028 ChlP geranylgeranyl 97.2 0.01 2.2E-07 53.1 13.3 95 209-305 2-158 (398)
442 PTZ00188 adrenodoxin reductase 97.2 0.0015 3.2E-08 59.0 7.5 89 206-305 38-136 (506)
443 TIGR02352 thiamin_ThiO glycine 97.2 0.0025 5.4E-08 55.4 9.0 56 248-305 136-191 (337)
444 PRK05945 sdhA succinate dehydr 97.1 0.0088 1.9E-07 56.2 12.7 54 251-305 137-195 (575)
445 COG3380 Predicted NAD/FAD-depe 97.1 0.0027 5.8E-08 52.2 7.9 92 209-304 3-157 (331)
446 PRK12771 putative glutamate sy 97.1 0.0022 4.7E-08 60.1 8.3 89 205-305 135-232 (564)
447 KOG2311 NAD/FAD-utilizing prot 97.1 0.0015 3.1E-08 57.8 6.5 36 49-87 26-61 (679)
448 PLN02985 squalene monooxygenas 97.1 0.012 2.7E-07 54.3 13.0 97 207-305 43-206 (514)
449 TIGR01810 betA choline dehydro 97.1 0.00053 1.1E-08 63.8 3.8 50 255-305 200-253 (532)
450 PLN00093 geranylgeranyl diphos 97.0 0.018 4E-07 52.3 13.3 97 207-305 39-197 (450)
451 COG1148 HdrA Heterodisulfide r 97.0 0.0021 4.6E-08 57.0 6.8 71 207-277 124-206 (622)
452 COG2303 BetA Choline dehydroge 97.0 0.00079 1.7E-08 62.5 4.4 37 49-88 5-41 (542)
453 PRK07803 sdhA succinate dehydr 96.9 0.017 3.6E-07 54.8 12.7 41 264-305 166-211 (626)
454 KOG0399 Glutamate synthase [Am 96.9 0.0028 6.1E-08 61.6 7.3 89 206-305 1784-1880(2142)
455 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0023 5E-08 57.1 5.9 34 209-242 2-35 (433)
456 PRK07395 L-aspartate oxidase; 96.8 0.013 2.8E-07 54.7 10.7 55 251-305 136-195 (553)
457 KOG1346 Programmed cell death 96.8 0.0025 5.3E-08 55.5 5.1 102 50-176 346-451 (659)
458 COG4529 Uncharacterized protei 96.7 0.021 4.5E-07 51.0 10.8 97 208-305 2-162 (474)
459 TIGR03862 flavo_PP4765 unchara 96.7 0.014 3.1E-07 51.3 9.8 81 220-305 57-139 (376)
460 PRK08641 sdhA succinate dehydr 96.7 0.037 8E-07 52.2 12.7 42 264-305 152-198 (589)
461 PRK08626 fumarate reductase fl 96.6 0.044 9.6E-07 52.3 12.8 50 255-305 164-218 (657)
462 KOG0405 Pyridine nucleotide-di 96.5 0.003 6.4E-08 53.7 4.0 100 49-176 187-289 (478)
463 KOG3851 Sulfide:quinone oxidor 96.5 0.0013 2.9E-08 55.1 1.9 96 206-306 38-144 (446)
464 TIGR03197 MnmC_Cterm tRNA U-34 96.5 0.0095 2.1E-07 53.0 7.4 55 248-305 134-188 (381)
465 TIGR01176 fum_red_Fp fumarate 96.5 0.053 1.2E-06 51.0 12.6 52 253-305 136-193 (580)
466 KOG2311 NAD/FAD-utilizing prot 96.5 0.013 2.9E-07 52.0 7.8 97 208-305 29-184 (679)
467 PLN02815 L-aspartate oxidase 96.5 0.036 7.8E-07 52.2 11.2 54 252-305 158-220 (594)
468 PRK08294 phenol 2-monooxygenas 96.5 0.062 1.3E-06 51.1 12.9 98 207-305 32-208 (634)
469 PRK09231 fumarate reductase fl 96.5 0.054 1.2E-06 51.0 12.4 51 254-305 138-194 (582)
470 PRK06567 putative bifunctional 96.4 0.0061 1.3E-07 59.4 6.0 34 206-239 382-415 (1028)
471 PLN02927 antheraxanthin epoxid 96.4 0.042 9.1E-07 52.0 11.4 35 206-240 80-114 (668)
472 KOG3855 Monooxygenase involved 96.2 0.0053 1.1E-07 53.4 4.0 39 49-87 34-73 (481)
473 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0069 1.5E-07 46.6 4.3 32 53-87 1-32 (157)
474 COG3634 AhpF Alkyl hydroperoxi 96.2 0.017 3.7E-07 49.3 6.7 99 207-305 211-323 (520)
475 COG0569 TrkA K+ transport syst 96.2 0.0068 1.5E-07 49.5 4.3 34 52-88 1-34 (225)
476 KOG1238 Glucose dehydrogenase/ 96.2 0.0061 1.3E-07 56.2 4.3 40 48-89 54-93 (623)
477 COG0029 NadB Aspartate oxidase 96.1 0.042 9.2E-07 49.2 9.0 54 251-305 135-194 (518)
478 PRK06719 precorrin-2 dehydroge 96.1 0.011 2.5E-07 45.3 4.9 35 49-86 11-45 (157)
479 TIGR01470 cysG_Nterm siroheme 96.1 0.011 2.4E-07 47.6 4.9 36 50-88 8-43 (205)
480 COG1004 Ugd Predicted UDP-gluc 96.1 0.014 3.1E-07 50.7 5.8 34 52-88 1-34 (414)
481 PRK08255 salicylyl-CoA 5-hydro 96.1 0.028 6E-07 54.7 8.5 33 209-241 2-36 (765)
482 KOG1298 Squalene monooxygenase 96.1 0.042 9.1E-07 47.7 8.4 82 208-291 46-188 (509)
483 TIGR02061 aprA adenosine phosp 96.0 0.2 4.2E-06 47.5 13.5 48 258-305 135-189 (614)
484 PF13241 NAD_binding_7: Putati 96.0 0.0068 1.5E-07 42.9 2.9 36 49-87 5-40 (103)
485 PRK09077 L-aspartate oxidase; 96.0 0.16 3.4E-06 47.4 12.7 52 254-305 143-205 (536)
486 PRK02705 murD UDP-N-acetylmura 95.9 0.011 2.5E-07 53.9 4.6 34 53-89 2-35 (459)
487 PF13450 NAD_binding_8: NAD(P) 95.8 0.023 5E-07 36.8 4.8 34 212-245 1-34 (68)
488 KOG3923 D-aspartate oxidase [A 95.8 0.013 2.8E-07 48.9 4.3 39 50-88 2-44 (342)
489 PRK06718 precorrin-2 dehydroge 95.7 0.02 4.3E-07 46.0 5.0 35 49-86 8-42 (202)
490 COG1206 Gid NAD(FAD)-utilizing 95.6 0.014 3.1E-07 49.3 3.9 35 51-88 3-37 (439)
491 PF01593 Amino_oxidase: Flavin 95.6 0.023 5E-07 50.9 5.5 52 252-305 212-263 (450)
492 PF13434 K_oxygenase: L-lysine 95.6 0.046 1E-06 47.7 7.1 97 209-305 4-157 (341)
493 PF00899 ThiF: ThiF family; I 95.5 0.019 4.2E-07 42.8 4.1 37 51-89 2-38 (135)
494 PRK14106 murD UDP-N-acetylmura 95.5 0.022 4.8E-07 51.8 5.2 35 50-87 4-38 (450)
495 PF01488 Shikimate_DH: Shikima 95.5 0.031 6.8E-07 41.7 5.1 37 49-87 10-46 (135)
496 TIGR03467 HpnE squalene-associ 95.5 0.048 1E-06 48.9 7.1 52 252-304 200-251 (419)
497 PRK06718 precorrin-2 dehydroge 95.3 0.052 1.1E-06 43.6 6.1 33 206-238 9-41 (202)
498 PF02737 3HCDH_N: 3-hydroxyacy 95.3 0.029 6.3E-07 44.2 4.5 33 53-88 1-33 (180)
499 PF01488 Shikimate_DH: Shikima 95.3 0.061 1.3E-06 40.1 6.0 34 206-239 11-45 (135)
500 PTZ00367 squalene epoxidase; P 95.2 0.28 6.2E-06 45.9 11.3 33 208-240 34-66 (567)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.1e-31 Score=238.31 Aligned_cols=238 Identities=28% Similarity=0.457 Sum_probs=196.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..++|+|||||+||++||..|++++. +.+|+++++++...|.++.+...++........ ......+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~ 67 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANW 67 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHH
Confidence 35689999999999999999999985 778999999988888777665444322111110 1123466
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCe
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 209 (306)
+.+.+++++.++.|..++.+.+.+.+.++..+.||+||+|||+.++.+| .++...+++..++++.+...+.+.+..+++
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~ 146 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERS 146 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence 7788999999989999999988999988889999999999999987543 444445677777777787777777777899
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC
Q 021871 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289 (306)
Q Consensus 210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~ 289 (306)
++|||+|.+|+|+|..|.+.+.+|+++.+.+.++++..++.+.+.+.+.++++||++++++.|++++. ++.+ .+.+.
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~ 223 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQ 223 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEEC
Confidence 99999999999999999999999999999999887767888888899999999999999999999984 3333 57888
Q ss_pred CCCEEecCEEEEecCC
Q 021871 290 DGSTIDADTVILLPYD 305 (306)
Q Consensus 290 ~G~~i~~d~vv~a~g~ 305 (306)
+|+++++|.||+|+|.
T Consensus 224 ~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 224 SGETLQADVVIYGIGI 239 (396)
T ss_pred CCCEEECCEEEECCCC
Confidence 9999999999999986
No 2
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=3.6e-30 Score=227.27 Aligned_cols=236 Identities=24% Similarity=0.379 Sum_probs=188.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+++|||||||+||+++|..|++.+ ++.+|+|+++++...|.++.+...+ .......++. .....+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~--~~~~~~~~~~----------~~~~~~~~ 68 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVF--SQGQRADDLT----------RQSAGEFA 68 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHH--hCCCCHHHhh----------cCCHHHHH
Confidence 369999999999999999999886 4779999999988777766543311 1111111110 12345667
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeE
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v 210 (306)
++++++++.+++|.+++.+.+.+.+ ++..+.||+||+|||+.+.. |++++.. .+..++.+.+...+......++++
T Consensus 69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~-p~i~G~~--~v~~~~~~~~~~~~~~~~~~~~~v 144 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFV-PPIPGRE--LMLTLNSQQEYRAAETQLRDAQRV 144 (377)
T ss_pred HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCC-CCCCCCc--eEEEECCHHHHHHHHHHhhcCCeE
Confidence 8889999989899999998887776 45679999999999999874 5555532 255566667776666666678999
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC
Q 021871 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (306)
Q Consensus 211 ~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~ 290 (306)
+|||+|.+|+|+|..|.+.+.+|+++.+.+.++++..++.+...+.+.+++.||+++.+++|++++.. ++.+ .+.+.+
T Consensus 145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~ 222 (377)
T PRK04965 145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSGI-RATLDS 222 (377)
T ss_pred EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCEE-EEEEcC
Confidence 99999999999999999999999999999998887668888899999999999999999999999853 3333 578889
Q ss_pred CCEEecCEEEEecCC
Q 021871 291 GSTIDADTVILLPYD 305 (306)
Q Consensus 291 G~~i~~d~vv~a~g~ 305 (306)
|+++++|.||+|+|.
T Consensus 223 g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 223 GRSIEVDAVIAAAGL 237 (377)
T ss_pred CcEEECCEEEECcCC
Confidence 999999999999996
No 3
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=3.3e-30 Score=244.80 Aligned_cols=241 Identities=18% Similarity=0.296 Sum_probs=201.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
+++|||||+|++|+.+|..|++++. ++.+|+|+++++...|.+..+... +.. ....+ .......+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~-~~~--~~~~~-----------l~~~~~~~ 68 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY-FSH--HTAEE-----------LSLVREGF 68 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh-HcC--CCHHH-----------ccCCCHHH
Confidence 4589999999999999999987642 346999999999988876555431 111 11111 12345677
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCe
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 209 (306)
+++.+++++.+..|..++...+.+.+.+|..+.||+||+|||+.+.. |++++.+.++++.++.+.+...+......+++
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~-p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~ 147 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWI-PPIKGSETQDCFVYRTIEDLNAIEACARRSKR 147 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCC-CCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence 88899999999899999998888888888889999999999999874 66777767778888888888888777777899
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC
Q 021871 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289 (306)
Q Consensus 210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~ 289 (306)
++|||+|.+|+|+|..|.+.+.+|+++.+.+.+++..+++.....+.+.++++||++++++.+++|..++++....+.+.
T Consensus 148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~ 227 (847)
T PRK14989 148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA 227 (847)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC
Confidence 99999999999999999999999999999999888668999999999999999999999999999985333445578889
Q ss_pred CCCEEecCEEEEecCCC
Q 021871 290 DGSTIDADTVILLPYDQ 306 (306)
Q Consensus 290 ~G~~i~~d~vv~a~g~~ 306 (306)
+|+.+++|.||+|+|..
T Consensus 228 dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 228 DGSELEVDFIVFSTGIR 244 (847)
T ss_pred CCCEEEcCEEEECCCcc
Confidence 99999999999999963
No 4
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.98 E-value=4.5e-30 Score=244.05 Aligned_cols=237 Identities=23% Similarity=0.407 Sum_probs=200.1
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhhc
Q 021871 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (306)
Q Consensus 54 vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (306)
|||||||+||+++|.+|++++..+.+|+|+++++...|.++.+.. ++.. .....+ .......++++.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g-~~~~~~-----------l~~~~~~~~~~~ 67 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQG-EADLDD-----------ITLNSKDWYEKH 67 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCC-CCCHHH-----------ccCCCHHHHHHC
Confidence 689999999999999999876445699999999998887665443 2211 111111 123456778889
Q ss_pred CeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEE
Q 021871 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (306)
Q Consensus 134 ~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~vi 213 (306)
+++++++++|..++...+.+.+.++..+.||+||+|||+.+.. |++|+.+.++++.++.+.+.+.+.+....+++++||
T Consensus 68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~-p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV 146 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFI-LPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI 146 (785)
T ss_pred CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCC-CCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence 9999999999999999999999999899999999999999874 667887778888888888888887777778999999
Q ss_pred cCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCE
Q 021871 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293 (306)
Q Consensus 214 G~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~ 293 (306)
|+|.+|+|+|..|.+.+.+|+++.+.+.++++.+++.....+.+.+++.||++++++.++++.. ++.+..|.+.+|+.
T Consensus 147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~ 224 (785)
T TIGR02374 147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS 224 (785)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE
Confidence 9999999999999999999999999999888767899999999999999999999999999983 44555788999999
Q ss_pred EecCEEEEecCCC
Q 021871 294 IDADTVILLPYDQ 306 (306)
Q Consensus 294 i~~d~vv~a~g~~ 306 (306)
+++|.||+|+|.+
T Consensus 225 i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 225 LEADLIVMAAGIR 237 (785)
T ss_pred EEcCEEEECCCCC
Confidence 9999999999963
No 5
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.98 E-value=1.4e-30 Score=224.52 Aligned_cols=228 Identities=24% Similarity=0.364 Sum_probs=180.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
++++|||||||++||.+|..|.+.. ++.+|++||+++.+.|.. .++.--....... +....+...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~p-lL~eva~g~l~~~-------------~i~~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFTP-LLYEVATGTLSES-------------EIAIPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccch-hhhhhhcCCCChh-------------heeccHHHH
Confidence 4679999999999999999999986 356999999999987652 2111000010110 112345566
Q ss_pred HhhcC-eEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCE----EEEccHHHHHHHHHhh
Q 021871 130 YKEKG-IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV----HYIRDVADADALISSL 204 (306)
Q Consensus 130 ~~~~~-v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~ 204 (306)
+++.+ +.+... +|++||.+.++|.+.++..+.||+||+|+|+.+.++. +||+ +.++.+.++.++++++
T Consensus 67 ~~~~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg------i~G~~E~a~~lks~edA~~ir~~l 139 (405)
T COG1252 67 LRKSGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG------IPGAAEYAFGLKTLEDALRLRRHL 139 (405)
T ss_pred hcccCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCC------CCCHHHhCCCCCCHHHHHHHHHHH
Confidence 66555 888866 9999999999999999888999999999999988654 4553 3556677777766655
Q ss_pred h--------cC-----CeEEEEcCCHHHHHHHHHHHhCC-------------CcEEEEecCCcccccccCHHHHHHHHHH
Q 021871 205 E--------KA-----KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQL 258 (306)
Q Consensus 205 ~--------~~-----~~v~viG~g~~a~e~a~~l~~~~-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
. .. ..++|+|+|.+|+|+|.+|.++. .+|+++++++++++. +++.+.+..++.
T Consensus 140 ~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~ 218 (405)
T COG1252 140 LEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERA 218 (405)
T ss_pred HHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHH
Confidence 3 11 26999999999999999998652 289999999999997 899999999999
Q ss_pred HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCE-EecCEEEEecCCC
Q 021871 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTVILLPYDQ 306 (306)
Q Consensus 259 ~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~-i~~d~vv~a~g~~ 306 (306)
|+++||++++++.|++++++ +|++.+|+. |++|.+|||+|.+
T Consensus 219 L~~~GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 219 LEKLGVEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred HHHCCCEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCc
Confidence 99999999999999999964 688888885 9999999999974
No 6
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=7.9e-29 Score=223.61 Aligned_cols=237 Identities=24% Similarity=0.361 Sum_probs=183.5
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (306)
+|+|||||++|+++|..|++++ ++.+|+|+|+++.+.|..+.++. +......... .........+++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~-~~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~ 68 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN-KELEITVYEKTDIVSFGACGLPY-FVGGFFDDPN-----------TMIARTPEEFIK 68 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC-CCCcEEEEECCCcceeecCCCce-EeccccCCHH-----------HhhcCCHHHHHH
Confidence 7999999999999999999986 35699999999887665433221 1111000000 012344566778
Q ss_pred cCeEEEeCCcEEEEeCCCCEEEcCC---CcEEe--cCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhh--
Q 021871 133 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 205 (306)
Q Consensus 133 ~~v~~~~~~~v~~v~~~~~~v~~~~---g~~~~--~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 205 (306)
.+++++.+++|.+++.+.+.+.+.+ +..++ ||+||+|||+.+.. |++++.+.+++..+..+.+...+.+.+.
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~-~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPII-PPIKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 8999988999999999888777653 55566 99999999999874 5667665677777776666666655443
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~ 285 (306)
.+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+++..+++++.+.+.+.++++||+++++++|.+++. ++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 468999999999999999999999999999999998887557899999999999999999999999999973 444445
Q ss_pred EEeCCCCEEecCEEEEecCCC
Q 021871 286 VKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 286 v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+.+++ .++++|.+|+|+|..
T Consensus 226 v~~~~-~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 226 VVTDK-GEYEADVVIVATGVK 245 (444)
T ss_pred EEeCC-CEEEcCEEEECcCCC
Confidence 66654 489999999999963
No 7
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.97 E-value=1.1e-28 Score=221.46 Aligned_cols=232 Identities=19% Similarity=0.251 Sum_probs=178.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHh
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (306)
++|||||||++|+++|.+|++++ ++.+|+|+|+++...|..+.++. +........... .......+.+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~----------~~~~~~~~~~ 69 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYA----------LAYTPEKFYD 69 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcch-hhcCccCCHHHc----------ccCCHHHHHH
Confidence 48999999999999999999875 46799999999887776543332 110000000000 0011234446
Q ss_pred hcCeEEEeCCcEEEEeCCCCEEEcCCC---c--EEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhh-
Q 021871 132 EKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE- 205 (306)
Q Consensus 132 ~~~v~~~~~~~v~~v~~~~~~v~~~~g---~--~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 205 (306)
+.+++++.+++|.++|.+.+.+.+.++ . .+.||+||+|||+.+.. |.++ .+++..++++.+...+.+.+.
T Consensus 70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~~---~~~~~~~~~~~~~~~l~~~l~~ 145 (438)
T PRK13512 70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGFE---SDITFTLRNLEDTDAIDQFIKA 145 (438)
T ss_pred hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCCC---CCCeEEecCHHHHHHHHHHHhh
Confidence 679999988999999999988877543 2 46899999999999874 3322 355666666777766665443
Q ss_pred -cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871 206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (306)
Q Consensus 206 -~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~ 284 (306)
.+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+.+. +++++.+.+.+.++++||++++++.|++++. +
T Consensus 146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~---- 218 (438)
T PRK13512 146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING--N---- 218 (438)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C----
Confidence 3689999999999999999999999999999999988765 7889999999999999999999999999973 2
Q ss_pred EEEeCCCCEEecCEEEEecCCC
Q 021871 285 AVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 285 ~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
.+.+++|+.+++|.||+|+|.+
T Consensus 219 ~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 219 EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred EEEECCCCEEEeCEEEECcCCC
Confidence 4667788899999999999963
No 8
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.97 E-value=9.9e-29 Score=211.57 Aligned_cols=238 Identities=45% Similarity=0.734 Sum_probs=213.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
-+.++|||||++|..|+..+++.|. ..+++++.++..+.|.++.+.+ +..+..........+|+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~---------------~~~~~~~~~a~r~~e~Y 137 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSK---------------FLLTVGEGLAKRTPEFY 137 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhccc---------------ceeeccccccccChhhH
Confidence 4689999999999999999999995 6788888888777776655444 33333344456777899
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeE
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v 210 (306)
++.++++++++.|..+|...+++.+.+|+.+.|++++||||+.+.+ ++.||.+.+.+.+++++.+...+........+|
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v 216 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKV 216 (478)
T ss_pred hhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence 9999999999999999999999999999999999999999998775 667888889999999999999888888888899
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC
Q 021871 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (306)
Q Consensus 211 ~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~ 290 (306)
+++|+|..++|+|..|...+.+||++.+.+..+++.+.+.+...+.+.++++||++++++.+.+++..++|++..|.+.+
T Consensus 217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d 296 (478)
T KOG1336|consen 217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD 296 (478)
T ss_pred EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCEEecCEEEEecCC
Q 021871 291 GSTIDADTVILLPYD 305 (306)
Q Consensus 291 G~~i~~d~vv~a~g~ 305 (306)
|..+++|.||+.+|-
T Consensus 297 g~~l~adlvv~GiG~ 311 (478)
T KOG1336|consen 297 GKTLEADLVVVGIGI 311 (478)
T ss_pred CCEeccCeEEEeecc
Confidence 999999999999885
No 9
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.96 E-value=1.6e-27 Score=213.08 Aligned_cols=230 Identities=19% Similarity=0.242 Sum_probs=169.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
+.+++|||||||++|+.+|++|.+.+. +|+|||+++.+.|. +.++. ....... .. . ....+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~------~-----~~~~~~~ 70 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQ-TTTGTLE-FR------S-----ICEPVRP 70 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHH-hcccCCC-hH------H-----hHHHHHH
Confidence 456799999999999999999965444 89999999887653 22211 1111000 00 0 0112344
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEc----------CCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHH
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD 198 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~----------~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~ 198 (306)
.++..++++.. .+|.+||.+.+.+.+ .++..+.||+||+|+|+.+.. +.+|+.. +....++.+.++.
T Consensus 71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~-~~ipG~~-e~~~~~~~~~~a~ 147 (424)
T PTZ00318 71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT-FNIPGVE-ERAFFLKEVNHAR 147 (424)
T ss_pred HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCC-CCCCCHH-HcCCCCCCHHHHH
Confidence 45566788765 499999999888877 456689999999999999874 4444421 2233445565655
Q ss_pred HHHHhhh-----------------cCCeEEEEcCCHHHHHHHHHHHhC--------------CCcEEEEecCCccccccc
Q 021871 199 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRLF 247 (306)
Q Consensus 199 ~~~~~~~-----------------~~~~v~viG~g~~a~e~a~~l~~~--------------~~~v~~~~~~~~~~~~~~ 247 (306)
.+.+.+. ..++++|||+|.+|+|+|.+|.++ +.+|+++.+.+.+++. +
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~ 226 (424)
T PTZ00318 148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-F 226 (424)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-C
Confidence 5443321 124899999999999999999863 5789999999998885 7
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
++.+.+.+.+.++++||++++++.|+++.. + .|.+++|+++++|.+|||+|.
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCC
Confidence 889999999999999999999999999984 2 467889999999999999985
No 10
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.96 E-value=5.7e-27 Score=212.34 Aligned_cols=242 Identities=19% Similarity=0.288 Sum_probs=168.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------CCCCCCCC---
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------LDKKPARL--- 111 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~--- 111 (306)
+.++||+|||||++|+++|++|+++|+ +|+++|+.+..+-.. .+.++... .......+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~--~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGC--THTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccc--cccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 456899999999999999999999998 999999965432110 00111100 00000000
Q ss_pred --CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCCCC
Q 021871 112 --PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (306)
Q Consensus 112 --~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~~~ 181 (306)
..+..+.. ......+...+++.+++++.+ ++..++.....+...++. .++||+||+|||+.+.. |+.+
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~ 155 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDV 155 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCC
Confidence 00100000 000112334456678888866 555566554456555654 79999999999999875 3333
Q ss_pred CCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (306)
Q Consensus 182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
+...+.+ .+++.+......+++++|+|+|.+|+|+|..++..+.+|+++.+.+.+++. +++++.+.+.+.+++
T Consensus 156 ~~~~~~v------~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~ 228 (461)
T PRK05249 156 DFDHPRI------YDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRD 228 (461)
T ss_pred CCCCCeE------EcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHH
Confidence 3222222 234444444456899999999999999999999999999999999999886 789999999999999
Q ss_pred cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+||+++.+++|++++.. ++.+ .+++.+|+.+++|.||+|+|.+
T Consensus 229 ~gI~v~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGG-DDGV-IVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred cCCEEEECCEEEEEEEe-CCeE-EEEECCCCEEEeCEEEEeecCC
Confidence 99999999999999863 3333 4667788899999999999963
No 11
>PRK06116 glutathione reductase; Validated
Probab=99.95 E-value=6.2e-27 Score=211.32 Aligned_cols=234 Identities=21% Similarity=0.364 Sum_probs=164.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC---------------------C--CCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP---------------------L--DKK 107 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~---------------------~--~~~ 107 (306)
.+||+||||||+|++||..|+++|+ +|+|+|+...-+- -.+.|++.+ . ...
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~---c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGT---CVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN 77 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhh---hhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 5899999999999999999999998 9999998632110 011111100 0 000
Q ss_pred CCCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC
Q 021871 108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY 184 (306)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~ 184 (306)
..++..+..... ......+...+.+.+++++.+ ++..++ .+++.+ ++..+.||+||+|||+.+.. |+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~-p~----- 147 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSI-PD----- 147 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCC-CC-----
Confidence 011110000000 000111223355678998876 555554 356666 66789999999999999874 44
Q ss_pred CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (306)
Q Consensus 185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 264 (306)
+++...+ .+++.++.....+++++|||+|.+|+|+|..+.+.+.+|+++.+++.+++. +++++.+.+.+.++++||
T Consensus 148 i~g~~~~---~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~~GV 223 (450)
T PRK06116 148 IPGAEYG---ITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEKKGI 223 (450)
T ss_pred CCCccee---EchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHHCCc
Confidence 3443322 123333333345789999999999999999999999999999999888775 788999999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+++++++|.+++.++++.+ .+.+.+|+++++|.||+|+|.
T Consensus 224 ~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 224 RLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred EEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCC
Confidence 9999999999986445534 577888889999999999986
No 12
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.95 E-value=3.8e-27 Score=212.19 Aligned_cols=238 Identities=19% Similarity=0.281 Sum_probs=164.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-----CCCCCCCCCCcccccC-----
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-----LDKKPARLPGFHTCVG----- 119 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----- 119 (306)
+.+||+|||||++|+++|.+|+++|+ +|+|+|+.+..... .....|++.. ...... .|.....
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG-~~~~~gcip~k~l~~~~~~~~---~~~~~~~~~~~~ 74 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGG-TCINIGCIPTKTLVHDAQQHT---DFVRAIQRKNEV 74 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccce-eEeeccccchHHHHHHhccCC---CHHHHHHHHHHH
Confidence 46899999999999999999999998 99999987532110 1111222110 000001 1110000
Q ss_pred -CCCCcCChhHHh-hcCeEEEeCCcEEEEeCCCCEEEcCCCc-EEecCcEEEeeCCCCccCCCCCCCC-CCCEEEEccHH
Q 021871 120 -SGGERQTPEWYK-EKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVA 195 (306)
Q Consensus 120 -~~~~~~~~~~~~-~~~v~~~~~~~v~~v~~~~~~v~~~~g~-~~~~~~lila~G~~~~~~~~~~~~~-~~g~~~~~~~~ 195 (306)
..........+. ..+++++.+ ++..++.....+...++. .+.||+||+|||+.+.. |++++.. .+++.
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~-p~i~G~~~~~~v~------ 146 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVV-PPIPGITTTPGVY------ 146 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCC-CCCCCccCCCCEE------
Confidence 000000111222 237888765 666677655566666664 69999999999999874 5555531 23332
Q ss_pred HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 275 (306)
Q Consensus 196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 275 (306)
++..+......+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+++. .++.+.+.+.+.++++||++++++.|+++
T Consensus 147 ~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i 225 (441)
T PRK08010 147 DSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERI 225 (441)
T ss_pred ChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 23333333345789999999999999999999999999999999988886 58888999999999999999999999999
Q ss_pred EeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 276 EAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+.+ ++.+ .+.+++| .+++|.||+|+|..
T Consensus 226 ~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 226 SHH-ENQV-QVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred EEc-CCEE-EEEEcCC-eEEeCEEEEeecCC
Confidence 863 4443 4666655 69999999999863
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.95 E-value=4.4e-27 Score=211.60 Aligned_cols=236 Identities=21% Similarity=0.351 Sum_probs=162.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------CCCC---
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------LDKK--- 107 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~~~~--- 107 (306)
.+||+||||||+|++||.+|+++|+ +|+|+|++..-+ .-.+.||+.. ....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~GG---~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 75 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKLGG---TCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLEN 75 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC---cEEEeccccccc---ceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcC
Confidence 5899999999999999999999998 999999864311 1111112110 0000
Q ss_pred CCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC
Q 021871 108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY 184 (306)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~ 184 (306)
..+++...... -......+...+++.+++++.++.+. .+..++.+ ++..+.||++|+|||+.+..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i---- 147 (450)
T TIGR01421 76 TFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENI---- 147 (450)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCC----
Confidence 01111000000 00001123334556789988775432 23445655 455799999999999998753243
Q ss_pred CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (306)
Q Consensus 185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 264 (306)
|+.... .+++.++.....+++++|||+|.+|+|+|..++..+.+|+++.+.+++++. +++.+.+.+.+.++++||
T Consensus 148 -~g~~~~---~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI 222 (450)
T TIGR01421 148 -PGAELG---TDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEKEGI 222 (450)
T ss_pred -CCCcee---EcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCC
Confidence 333221 133344433345789999999999999999999999999999999998876 799999999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecCCC
Q 021871 265 KFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPYDQ 306 (306)
Q Consensus 265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~~ 306 (306)
++++++.|++++..+++.+ .+.+.+| +.+++|.||+|+|..
T Consensus 223 ~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 223 NVHKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred EEEcCCEEEEEEEeCCceE-EEEECCCcEEEEcCEEEEeeCCC
Confidence 9999999999986434433 5777777 579999999999964
No 14
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.95 E-value=3.6e-27 Score=212.17 Aligned_cols=239 Identities=16% Similarity=0.233 Sum_probs=160.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc-----CCCCCCCCCCCccccc---CCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF-----PLDKKPARLPGFHTCV---GSG 121 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~ 121 (306)
+.+||+|||||+||++||.+|+++|+ +|+|+|+++.. +...-.+.|++. .......++....... ...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~-~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAM-YGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSR 77 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcc-cceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999998 99999998632 110011112211 0000001111000000 000
Q ss_pred CCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCC---CcEEecCcEEEeeCCCCccCCCCCCC-CCCCEEEEccHHHH
Q 021871 122 GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADA 197 (306)
Q Consensus 122 ~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~---g~~~~~~~lila~G~~~~~~~~~~~~-~~~g~~~~~~~~~~ 197 (306)
........+.+.+++++.+. ...+ +.+++.+.+ ...+.||+||+|||+.+.. |++|+. ..+++. ++
T Consensus 78 ~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~------~~ 147 (438)
T PRK07251 78 LRGKNYAMLAGSGVDLYDAE-AHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVY------DS 147 (438)
T ss_pred HHHHHHHHHHhCCCEEEEEE-EEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEE------ch
Confidence 01112234566788877653 3222 345554432 2479999999999999874 455542 122222 33
Q ss_pred HHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 198 ~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
..+.+....+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+++. .++.+.+.+.+.++++||+++++++|++++.
T Consensus 148 ~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~ 226 (438)
T PRK07251 148 TGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN 226 (438)
T ss_pred HHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEe
Confidence 344443446889999999999999999999999999999999998876 5788888899999999999999999999986
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+++.+ .+. .+|+++++|.+|+|+|..
T Consensus 227 -~~~~v-~v~-~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 227 -DGDQV-LVV-TEDETYRFDALLYATGRK 252 (438)
T ss_pred -cCCEE-EEE-ECCeEEEcCEEEEeeCCC
Confidence 34443 243 356789999999999863
No 15
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.95 E-value=1.2e-26 Score=208.93 Aligned_cols=236 Identities=18% Similarity=0.309 Sum_probs=164.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------C--CCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------L--DKKP 108 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~--~~~~ 108 (306)
.|||+||||||+|++||.+++++|+ +|+|+|+...-+ .-.+.||+.. . ....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~GG---~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 75 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPRVGG---TCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKAR 75 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCccCc---eeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCC
Confidence 4899999999999999999999998 999999853211 1111112110 0 0000
Q ss_pred CCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCC
Q 021871 109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (306)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~ 185 (306)
.++....... -......+...+++.++++..+ ++..++.+...+. .++..+.||+||+|||+.+.. |++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~-p~i----- 147 (446)
T TIGR01424 76 FDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQK-PNL----- 147 (446)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCC-CCC-----
Confidence 0000000000 0011123344466678998866 7777776533333 456689999999999999874 443
Q ss_pred CCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCE
Q 021871 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (306)
Q Consensus 186 ~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 265 (306)
+|..... +++........+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. +++++.+.+.+.++++||+
T Consensus 148 ~G~~~~~---~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~ 223 (446)
T TIGR01424 148 PGHELGI---TSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIR 223 (446)
T ss_pred CCcccee---chHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCE
Confidence 3432211 22222222235789999999999999999999999999999999988876 6888999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 266 i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
++.++.|++++..+++ + .+.+.+|+.+++|.+|+|+|..
T Consensus 224 i~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 224 IHPQTSLTSITKTDDG-L-KVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred EEeCCEEEEEEEcCCe-E-EEEEcCCcEeecCEEEEeeCCC
Confidence 9999999999864344 3 4677788889999999999863
No 16
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.95 E-value=2.8e-26 Score=201.90 Aligned_cols=229 Identities=21% Similarity=0.327 Sum_probs=168.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (306)
+|||||||+||+.+|.+|+++..++.+|+|+|+++.+.|... ++ .+..... ... +....+..++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~-~~~~g~~-~~~-----------~~~~~~~~~~~~ 66 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LP-GMIAGHY-SLD-----------EIRIDLRRLARQ 66 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hh-HHHheeC-CHH-----------HhcccHHHHHHh
Confidence 589999999999999999765334669999999988665531 11 1111100 000 112345566777
Q ss_pred cCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHH----HHHhh---h
Q 021871 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E 205 (306)
Q Consensus 133 ~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~---~ 205 (306)
.+++++.+ +|..++.+++.+.+++++.+.||+||+|||+.+.. |.+|+. .+....++.+.+... +.... .
T Consensus 67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~-~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPL-SGVEGA-ADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCC-CCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 89998865 89999999999999999889999999999999874 555542 333444444444433 22222 1
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhC----C--CcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGW----K--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 279 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~----~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 279 (306)
.+++++|+|+|..++|+|..|.+. + .+|+++ +.+.+++. +++.+...+.+.+++.||++++++.|++++.
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-- 219 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD-- 219 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence 357899999999999999999753 3 478888 56666654 6788888999999999999999999999873
Q ss_pred CCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 280 DGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 280 ~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+ .+.+.+|+++++|.+|+|+|..
T Consensus 220 ~----~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 220 G----ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred C----eEEeCCCCEEecCEEEEccCCC
Confidence 2 4677888899999999999963
No 17
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.95 E-value=1.3e-26 Score=204.82 Aligned_cols=240 Identities=24% Similarity=0.368 Sum_probs=169.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-----------C------------C
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-----------L------------D 105 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----------~------------~ 105 (306)
+..||++|||||++|..+|.++++.|. +|.++|+....+ ..-++.||+.+ . .
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~---kvalvE~~~~lG--GtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~ 76 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL---KVALVEKGERLG--GTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE 76 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC---CEEEEeecCCcC--ceEEeeCccccHHHHHHHHHHHHHhhcccccceecC
Confidence 456999999999999999999999998 599999995221 11111222210 0 0
Q ss_pred CCCCCCCCcccc---cCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCC--CcEEecCcEEEeeCCCCccCCCC
Q 021871 106 KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEK 180 (306)
Q Consensus 106 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~--g~~~~~~~lila~G~~~~~~~~~ 180 (306)
....++...... ............+++.+++++.+. ..-+ +..++.+.+ .+.++++++|+|||+.|..+| .
T Consensus 77 ~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a~f~--~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~ 152 (454)
T COG1249 77 VPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-ARFV--DPHTVEVTGEDKETITADNIIIATGSRPRIPP-G 152 (454)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-EEEC--CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-C
Confidence 000111111000 011122233344555688887663 2212 245666655 468999999999999998544 4
Q ss_pred CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (306)
Q Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
++ +++..++ +.+........|++++|||+|++|+|+|..++..|.+||++.+.+++++. +++++.+.+.+.|+
T Consensus 153 ~~--~~~~~~~----~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~ 225 (454)
T COG1249 153 PG--IDGARIL----DSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLE 225 (454)
T ss_pred CC--CCCCeEE----echhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHH
Confidence 44 3333322 33332223367999999999999999999999999999999999999996 89999999999999
Q ss_pred HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC--EEecCEEEEecCCC
Q 021871 261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVILLPYDQ 306 (306)
Q Consensus 261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~--~i~~d~vv~a~g~~ 306 (306)
+.|++++++++++.++.++++ + .+.+++|+ ++++|.+++|+|.+
T Consensus 226 ~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 226 KGGVKILLNTKVTAVEKKDDG-V-LVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred hCCeEEEccceEEEEEecCCe-E-EEEEecCCCCEEEeeEEEEccCCc
Confidence 999999999999999975444 3 68888876 79999999999974
No 18
>PRK06370 mercuric reductase; Validated
Probab=99.95 E-value=1.2e-26 Score=210.19 Aligned_cols=241 Identities=17% Similarity=0.286 Sum_probs=163.3
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------CC--
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------LD-- 105 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~~-- 105 (306)
++.++||+||||||+|++||.+|+++|+ +|+|+|+...-+- -.+.|++.+ ..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~---c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 75 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGT---CVNTGCVPTKTLIASARAAHLARRAAEYGVSVG 75 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCc---eeccccCcHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 3557999999999999999999999998 9999998643211 011122110 00
Q ss_pred -CCCCCCCCccccc---CCCCCcCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCC
Q 021871 106 -KKPARLPGFHTCV---GSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180 (306)
Q Consensus 106 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~ 180 (306)
....++....... .......+..++++. +++++.++.+ ..+.+++.+ ++..+.||+||+|||+.+.. |++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~---~~~~~~v~v-~~~~~~~d~lViATGs~p~~-p~i 150 (463)
T PRK06370 76 GPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR---FESPNTVRV-GGETLRAKRIFINTGARAAI-PPI 150 (463)
T ss_pred ccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE---EccCCEEEE-CcEEEEeCEEEEcCCCCCCC-CCC
Confidence 0011111000000 000112334455665 8998877543 233456665 34579999999999999874 555
Q ss_pred CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (306)
Q Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
++.+...+. +...+.+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. .++++.+.+.+.++
T Consensus 151 ~G~~~~~~~------~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~ 223 (463)
T PRK06370 151 PGLDEVGYL------TNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILE 223 (463)
T ss_pred CCCCcCceE------cchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHH
Confidence 553322222 22223322345789999999999999999999999999999999998886 68888999999999
Q ss_pred HcCCEEEcCceEEEEEeCCCCcEEEEEeCC-CCEEecCEEEEecCCC
Q 021871 261 QNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTVILLPYDQ 306 (306)
Q Consensus 261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G~~i~~d~vv~a~g~~ 306 (306)
++||++++++.|.+++..+++..+.+...+ +..+++|.||+|+|..
T Consensus 224 ~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 224 REGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred hCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 999999999999999864334322333333 4579999999999963
No 19
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.95 E-value=3.5e-26 Score=207.45 Aligned_cols=242 Identities=23% Similarity=0.338 Sum_probs=163.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------C--CCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------L--DKK 107 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~--~~~ 107 (306)
..+||+|||||++|+++|.+|+++|+ +|+|+|+...-+ .-.+.||+.. . ...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG---~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 76 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGKLGG---TCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGP 76 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCc---ceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 46899999999999999999999998 999999863211 0011111100 0 000
Q ss_pred CCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCC-------CCEEEcCCC--cEEecCcEEEeeCCCCc
Q 021871 108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTAS 175 (306)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~-------~~~v~~~~g--~~~~~~~lila~G~~~~ 175 (306)
..+++...... -..........+++.+++++.+ .+..++.+ ...+.+.+| ..+.||+||+|||+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 77 ALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 00110000000 0000111223455678998877 66677766 445666666 47999999999999986
Q ss_pred cCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH
Q 021871 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (306)
Q Consensus 176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
.+|..+ ..+...+ +++...+....+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+++. .++.+.+.+
T Consensus 156 ~~p~~~---~~~~~~~----~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l 227 (472)
T PRK05976 156 ELPGLP---FDGEYVI----SSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEV 227 (472)
T ss_pred CCCCCC---CCCceEE----cchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHH
Confidence 443221 2332222 22233222234789999999999999999999999999999999998886 688899999
Q ss_pred HHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC--EEecCEEEEecCCC
Q 021871 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTVILLPYDQ 306 (306)
Q Consensus 256 ~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~--~i~~d~vv~a~g~~ 306 (306)
.+.++++||++++++.|++++..+++.+..+.+.+|+ ++++|.+|+|+|..
T Consensus 228 ~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 228 ARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 9999999999999999999984113334345556664 69999999999963
No 20
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=3.6e-26 Score=207.09 Aligned_cols=243 Identities=24% Similarity=0.343 Sum_probs=162.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-C-CCCccccccc---------------cCCC--CCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-Y-ERPALTKGYL---------------FPLD--KKPAR 110 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~-~~~~~~~~~~---------------~~~~--~~~~~ 110 (306)
..+||+|||||++|++||..|+++|+ +|+|+|+...-+ + ....++...+ +.+. ....+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 35899999999999999999999998 999999876211 1 1100110000 0000 00001
Q ss_pred CCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcC-CCcEEecCcEEEeeCCCCccCCCCCCCCCC
Q 021871 111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (306)
Q Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~-~g~~~~~~~lila~G~~~~~~~~~~~~~~~ 186 (306)
+..+.... .......+...+++.+++++.+ ++..++.....+... ++..+.||+||+|||+.+..+| +...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p---g~~~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELP---GIEID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCC---CCCCC
Confidence 00000000 0000112334456678998876 555566544455432 3367999999999999986433 32223
Q ss_pred CEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (306)
Q Consensus 187 g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 266 (306)
+...+ +++...+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++||++
T Consensus 156 ~~~v~----~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i 230 (462)
T PRK06416 156 GRVIW----TSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKI 230 (462)
T ss_pred CCeEE----cchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEE
Confidence 32222 22222222235789999999999999999999999999999999998886 78899999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCC---CEEecCEEEEecCCC
Q 021871 267 VKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVILLPYDQ 306 (306)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~~~~G---~~i~~d~vv~a~g~~ 306 (306)
+++++|++++.+ ++.+ .+.+.+| +++++|.||+|+|..
T Consensus 231 ~~~~~V~~i~~~-~~~v-~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 231 KTGAKAKKVEQT-DDGV-TVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred EeCCEEEEEEEe-CCEE-EEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 999999999863 3333 4666555 679999999999863
No 21
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-26 Score=194.84 Aligned_cols=223 Identities=24% Similarity=0.332 Sum_probs=169.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCc-EEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCCh
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~-V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (306)
+.+||+||||||+||+||.++.+.++ + ++|+|+...- |++.... ...++|++.. ..+..+...+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l---~~~li~~~~~~g---------g~~~~~~-~venypg~~~~~~g~~L~~~~~ 68 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGL---KVVLILEGGEPG---------GQLTKTT-DVENYPGFPGGILGPELMEQMK 68 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCC---CcEEEEecCCcC---------Cccccce-eecCCCCCccCCchHHHHHHHH
Confidence 56899999999999999999999998 6 7777765442 2222222 4566777776 56666667777
Q ss_pred hHHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCC---CCCCCEEEEccHHHHHHHHH
Q 021871 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDVADADALIS 202 (306)
Q Consensus 128 ~~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~ 202 (306)
++...+++++.. ..|..++... +.+.++++. +++++||+|||..+++ |.+|+ ....++.++.. |+.
T Consensus 69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cdg--- 139 (305)
T COG0492 69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CDG--- 139 (305)
T ss_pred HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cCc---
Confidence 888888988876 5888888764 577777776 9999999999999875 33332 12346676642 333
Q ss_pred hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCC
Q 021871 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDG 281 (306)
Q Consensus 203 ~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~ 281 (306)
+..+++|+|+|+|++|+|.|.+|.+++++|+++.|.+.+.+ . +.+.++++++ +|++++++.|+++.. ++
T Consensus 140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~----~~~~~~l~~~~~i~~~~~~~i~ei~G--~~ 209 (305)
T COG0492 140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---E----EILVERLKKNVKIEVLTNTVVKEILG--DD 209 (305)
T ss_pred -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---C----HHHHHHHHhcCCeEEEeCCceeEEec--Cc
Confidence 34578999999999999999999999999999999988766 2 3455556655 899999999999994 43
Q ss_pred cEEEEEeCC--CC--EEecCEEEEecCC
Q 021871 282 RVAAVKLED--GS--TIDADTVILLPYD 305 (306)
Q Consensus 282 ~v~~v~~~~--G~--~i~~d~vv~a~g~ 305 (306)
+.+|.+.+ |+ .+.+|.+++++|.
T Consensus 210 -v~~v~l~~~~~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 210 -VEGVVLKNVKGEEKELPVDGVFIAIGH 236 (305)
T ss_pred -cceEEEEecCCceEEEEeceEEEecCC
Confidence 55677766 32 6899999999985
No 22
>PRK10262 thioredoxin reductase; Provisional
Probab=99.95 E-value=3.5e-26 Score=197.78 Aligned_cols=234 Identities=16% Similarity=0.186 Sum_probs=158.6
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCC
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT 126 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 126 (306)
+.+.+||+|||||||||+||..|+++|+ +++++|....-+.. ... ....++|+... ........++
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~ 69 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--------TTT--TEVENWPGDPNDLTGPLLMERM 69 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCce--------ecC--ceECCCCCCCCCCCHHHHHHHH
Confidence 3567899999999999999999999998 89999854321110 000 00111122110 0001112344
Q ss_pred hhHHhhcCeEEEeCCcEEEEeCCCCEEEcC-CCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHH
Q 021871 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (306)
Q Consensus 127 ~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~-~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~ 202 (306)
......++..+..+ ++..++.....+.+. +...+.||+||+|+|+.++. |++|+.+ .+++.++. .+..
T Consensus 70 ~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~------~~~~ 141 (321)
T PRK10262 70 HEHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACA------TCDG 141 (321)
T ss_pred HHHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEee------cCCH
Confidence 55555667776654 677777665543332 22368999999999999874 5555522 22333332 1112
Q ss_pred hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCc
Q 021871 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282 (306)
Q Consensus 203 ~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~ 282 (306)
....+++++|+|+|.+|+|+|..|++.+.+|+++.+.+.+. .++.+.+.+.+.+++.||++++++.|++++. +++.
T Consensus 142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~ 217 (321)
T PRK10262 142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMG 217 (321)
T ss_pred HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCcc
Confidence 23468999999999999999999999999999999987653 2566778888889999999999999999985 3434
Q ss_pred EEEEEeCCC------CEEecCEEEEecCCC
Q 021871 283 VAAVKLEDG------STIDADTVILLPYDQ 306 (306)
Q Consensus 283 v~~v~~~~G------~~i~~d~vv~a~g~~ 306 (306)
+.+|++.++ +++++|.||+|+|..
T Consensus 218 ~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 218 VTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred EEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 445655432 369999999999963
No 23
>PLN02507 glutathione reductase
Probab=99.95 E-value=2.3e-25 Score=202.37 Aligned_cols=239 Identities=18% Similarity=0.265 Sum_probs=166.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC---------CCCCCCCCccccccccC--------------C-C
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPYERPALTKGYLFP--------------L-D 105 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~---------~~~~~~~~~~~~~~~~~--------------~-~ 105 (306)
..|||+|||||++|+++|.+++++|. +|+++|+. ...+ ..-+..||+.. . .
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~G--Gtc~n~GciPsK~l~~~a~~~~~~~~~~ 98 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVG--GTCVIRGCVPKKILVYGATFGGEFEDAK 98 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCcc--ceeeccCchhHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999998 99999962 1111 11111122100 0 0
Q ss_pred CCCCCCC-----CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCC
Q 021871 106 KKPARLP-----GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGC 172 (306)
Q Consensus 106 ~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~ 172 (306)
....+.+ .+..+.. ......+...+++.+++++.+ ++..++.+...+.+.+|+ .+.||+||+|||+
T Consensus 99 ~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs 177 (499)
T PLN02507 99 NYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGS 177 (499)
T ss_pred hcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCC
Confidence 0000000 0000000 000011223345578888866 677778777777777775 5899999999999
Q ss_pred CCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHH
Q 021871 173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 252 (306)
Q Consensus 173 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (306)
.+.. |++ ++..... +.+...+....+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. +++++.
T Consensus 178 ~p~~-p~i-----pG~~~~~---~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~ 247 (499)
T PLN02507 178 RAQR-PNI-----PGKELAI---TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMR 247 (499)
T ss_pred CCCC-CCC-----CCcccee---chHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHH
Confidence 9874 443 3332211 22223332335789999999999999999999999999999999988775 789999
Q ss_pred HHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 253 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+.+.+.++++||++++++.|++++.. ++.+ .+.+.+|+++++|.||+|+|.+
T Consensus 248 ~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 248 AVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECCCcEEEcCEEEEeecCC
Confidence 99999999999999999999999863 3333 4777888899999999999863
No 24
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.94 E-value=6.2e-26 Score=194.58 Aligned_cols=225 Identities=23% Similarity=0.317 Sum_probs=156.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChhHH
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY 130 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (306)
+||+|||||++||++|..|++.|+ +|+|+|+.+..+ .+... ....++|++.. ..+.+...++.+.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg---------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGG---------QLTTT-TEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCc---------ceeec-ccccccCCCCCCCChHHHHHHHHHHH
Confidence 589999999999999999999998 999999875211 11000 00111222221 11112234666777
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHhhh
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLE 205 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~ 205 (306)
++.++++++ .+|.+++.... .+.+.++..++||++|+|+|..+.. |.+|+.. ..++.+.... .....
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~-~~i~g~~~~~~~~~~~~~~~------~~~~~ 139 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK-LGIPGEDEFLGRGVSYCATC------DGPFF 139 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc-CCCCChhhcCCccEEEeeec------Chhhc
Confidence 888999887 78999987654 5666677789999999999998764 4445422 1222222111 11233
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA 284 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~ 284 (306)
.+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+.. . ..+.+.++++ ||+++.++.+++++. ++.+.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~ 210 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVG--DNKVE 210 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEc--cCcEE
Confidence 578999999999999999999999999999999876532 2 3355666776 999999999999985 33444
Q ss_pred EEEeC---CC--CEEecCEEEEecCCC
Q 021871 285 AVKLE---DG--STIDADTVILLPYDQ 306 (306)
Q Consensus 285 ~v~~~---~G--~~i~~d~vv~a~g~~ 306 (306)
.+++. +| .++++|.+|+|+|.+
T Consensus 211 ~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 211 GVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred EEEEEecCCCceEEEEccEEEEeeCCC
Confidence 45442 23 479999999999964
No 25
>PLN02546 glutathione reductase
Probab=99.94 E-value=2.2e-25 Score=203.50 Aligned_cols=238 Identities=19% Similarity=0.293 Sum_probs=165.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC------CC-CCCCCCccccccccC--------------------
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AY-APYERPALTKGYLFP-------------------- 103 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~------~~-~~~~~~~~~~~~~~~-------------------- 103 (306)
.|||+|||||++|+.+|..++++|. +|+|+|+. +. -.+...-++.||+-.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 4899999999999999999999998 99999961 10 111111222223210
Q ss_pred CC---CCCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccC
Q 021871 104 LD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177 (306)
Q Consensus 104 ~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~ 177 (306)
+. ....++....... -......+...+++.+++++.+ ++..++.. .+.+ +|..+.||+||+|||+.+..
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~~--~V~v-~G~~~~~D~LVIATGs~p~~- 230 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDPH--TVDV-DGKLYTARNILIAVGGRPFI- 230 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccCC--EEEE-CCEEEECCEEEEeCCCCCCC-
Confidence 00 0011111100000 0011123344456678998866 55556553 4555 46679999999999999874
Q ss_pred CCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHH
Q 021871 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 257 (306)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
|+ +||... ..+++.+.+....+++++|||+|.+|+|+|..+..++.+|+++.+.+.+++. +++.+.+.+.+
T Consensus 231 P~-----IpG~~~---v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~~ 301 (558)
T PLN02546 231 PD-----IPGIEH---AIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRDFVAE 301 (558)
T ss_pred CC-----CCChhh---ccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHHHHHH
Confidence 44 444432 2344555444456899999999999999999999999999999999988875 78999999999
Q ss_pred HHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 258 ~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
.++++||++++++.+.+++..+++.+ .+.+.+++.+.+|.||+|+|..
T Consensus 302 ~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 302 QMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccc
Confidence 99999999999999999986445544 4666666455589999999963
No 26
>PTZ00058 glutathione reductase; Provisional
Probab=99.94 E-value=3e-25 Score=202.59 Aligned_cols=239 Identities=18% Similarity=0.303 Sum_probs=159.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC--------------------C-CC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL--------------------D-KK 107 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~--------------------~-~~ 107 (306)
...+||+|||||++|++||..+++.|. +|++||++..-+ .-++.||+... . ..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~GG---tCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~ 119 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYLGG---TCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQF 119 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccccc---cccccCCCCCchhhhhcccHHHHHHHHhcCCCccC
Confidence 356899999999999999999999998 999999863211 11122222100 0 00
Q ss_pred CCCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeC--------------------CCCEE------EcCCC
Q 021871 108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDI--------------------EKQTL------ITNSG 158 (306)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~--------------------~~~~v------~~~~g 158 (306)
..+++....... ......+...+++.+++++.+... -++. +..++ ..+++
T Consensus 120 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~-f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 198 (561)
T PTZ00058 120 SFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGS-LLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG 198 (561)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEE-EecCCEEEeeccccccccccccccccceeeeccceecCCC
Confidence 011111000000 011112334456678887765321 1111 11122 23466
Q ss_pred cEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 021871 159 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238 (306)
Q Consensus 159 ~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~ 238 (306)
..++||++|+|||+.|.. |++ +|..+. .+++.+++ +..+++++|||+|.+|+|+|..+...+.+|+++.+
T Consensus 199 ~~i~ad~lVIATGS~P~~-P~I-----pG~~~v---~ts~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~ 268 (561)
T PTZ00058 199 QVIEGKNILIAVGNKPIF-PDV-----KGKEFT---ISSDDFFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYIFAR 268 (561)
T ss_pred cEEECCEEEEecCCCCCC-CCC-----CCceeE---EEHHHHhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEe
Confidence 689999999999999874 544 443222 13344433 22389999999999999999999999999999999
Q ss_pred CCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecCCC
Q 021871 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPYDQ 306 (306)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~~ 306 (306)
++++++. +++++.+.+.+.++++||++++++.|.+++..+++.+ .+...++ +++++|.||+|+|..
T Consensus 269 ~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 269 GNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred ccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCC
Confidence 9988875 7899999999999999999999999999986434333 2444344 479999999999863
No 27
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=1e-25 Score=203.85 Aligned_cols=240 Identities=15% Similarity=0.204 Sum_probs=160.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC----------------------CCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP----------------------LDKK 107 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~----------------------~~~~ 107 (306)
.++||+|||||++|+++|.+|+++|+ +|+|+|+.+..+- .-++.|++.. ....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG--~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGG--VCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccc--cccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 46999999999999999999999998 9999998753321 0111111100 0000
Q ss_pred CCCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCccCCCCCC
Q 021871 108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG 182 (306)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~~~~~~~ 182 (306)
..++..+..... ..........+++.+++++.+ .+..++...-.+...++ ..+.||+||+|||+.+..+|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 156 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH 156 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC
Confidence 111111000000 000011223355678998866 44444433334444455 479999999999999875454333
Q ss_pred CCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc
Q 021871 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (306)
Q Consensus 183 ~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
+.+++. +.....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++
T Consensus 157 -~~~~v~------~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~ 228 (471)
T PRK06467 157 -DDPRIW------DSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ 228 (471)
T ss_pred -CCCcEE------ChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc
Confidence 122221 22233332345789999999999999999999999999999999999886 7899999999999988
Q ss_pred CCEEEcCceEEEEEeCCCCcEEEEEeCC--C--CEEecCEEEEecCCC
Q 021871 263 GVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTVILLPYDQ 306 (306)
Q Consensus 263 gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G--~~i~~d~vv~a~g~~ 306 (306)
+++++++.|++++..+++ + .+++.+ | +++++|.||+|+|.+
T Consensus 229 -v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 229 -FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred -eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeeccc
Confidence 999999999999864333 3 354433 2 369999999999963
No 28
>PRK14694 putative mercuric reductase; Provisional
Probab=99.94 E-value=4.8e-25 Score=199.70 Aligned_cols=240 Identities=16% Similarity=0.300 Sum_probs=162.0
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC------------CCCC--CCC--
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL------------DKKP--ARL-- 111 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~------------~~~~--~~~-- 111 (306)
+...+||+|||||++|+++|.+|++.|+ +|+|+|++..-+ .-.+.||+... .... ..+
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GG---tc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~ 76 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGG---TCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSA 76 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEcccccc---ceecCCccccHHHHHHHHHHHHHhhccccCCccc
Confidence 3457899999999999999999999998 999999874211 00112221000 0000 000
Q ss_pred --C--CcccccC------CCCCc-CChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccC
Q 021871 112 --P--GFHTCVG------SGGER-QTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRF 177 (306)
Q Consensus 112 --~--~~~~~~~------~~~~~-~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~ 177 (306)
+ .+..+.. ..... .....+++. +++++.+ ++..++.+...+.+.++. .++||+||+|||+.+..
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~- 154 (468)
T PRK14694 77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAE- 154 (468)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCC-
Confidence 0 0111100 00000 112223333 7888766 788888887788877763 79999999999999874
Q ss_pred CCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHH
Q 021871 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 257 (306)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
|++|+.+.. .++. ..........+++++|||+|.+|+|+|..+.+++.+|+++.+. .+++. .++.+.+.+.+
T Consensus 155 p~i~G~~~~--~~~~----~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~~-~~~~~~~~l~~ 226 (468)
T PRK14694 155 PPVPGLAET--PYLT----STSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVLSQ-EDPAVGEAIEA 226 (468)
T ss_pred CCCCCCCCC--ceEc----chhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCCCC-CCHHHHHHHHH
Confidence 555553211 1221 1111222234789999999999999999999999999999874 55554 68889999999
Q ss_pred HHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 258 ~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
.++++||++++++.|.+++. +++.+ .+.+.++ ++++|.||+|+|..
T Consensus 227 ~l~~~GI~v~~~~~v~~i~~-~~~~~-~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 227 AFRREGIEVLKQTQASEVDY-NGREF-ILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred HHHhCCCEEEeCCEEEEEEE-cCCEE-EEEECCC-EEEeCEEEEccCCC
Confidence 99999999999999999985 34433 3655554 79999999999863
No 29
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.94 E-value=1.4e-25 Score=203.22 Aligned_cols=236 Identities=20% Similarity=0.322 Sum_probs=160.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-----------C-CCCCCC------CCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-----------L-DKKPAR------LPG 113 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~------~~~ 113 (306)
+||+||||||+|+++|.+++++|+ +|+|+|++..-+ .-++.||+.. . ...... -..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~GG---~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~ 74 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPLGG---TCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVD 74 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcccC---CeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccC
Confidence 699999999999999999999998 999999875221 0011111100 0 000000 001
Q ss_pred cccccC------CCC-CcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc-EEecCcEEEeeCCCCccCCCCCCCCC
Q 021871 114 FHTCVG------SGG-ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYL 185 (306)
Q Consensus 114 ~~~~~~------~~~-~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~-~~~~~~lila~G~~~~~~~~~~~~~~ 185 (306)
+..... ... ...+...+++.+++++.+ ++..+ +.+++.+.++. .+.||+||+|||+.+.. |++|+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~~-p~i~G~~~ 150 (463)
T TIGR02053 75 FGELLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPAI-PPIPGLKE 150 (463)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCCC-CCCCCccc
Confidence 111000 000 011334566778888766 34333 35677776653 68999999999999874 55555332
Q ss_pred CCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCE
Q 021871 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (306)
Q Consensus 186 ~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 265 (306)
.++ + +++.+.+....+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. .++++...+.+.++++||+
T Consensus 151 ~~~--~----~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~ 223 (463)
T TIGR02053 151 AGY--L----TSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIE 223 (463)
T ss_pred Cce--E----CchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCE
Confidence 222 1 23333332334689999999999999999999999999999999998886 6888999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeC---CCCEEecCEEEEecCCC
Q 021871 266 FVKGASIKNLEAGSDGRVAAVKLE---DGSTIDADTVILLPYDQ 306 (306)
Q Consensus 266 i~~~~~v~~i~~~~~~~v~~v~~~---~G~~i~~d~vv~a~g~~ 306 (306)
++++++|++++.++++. .+.+. +++++++|.||+|+|..
T Consensus 224 i~~~~~V~~i~~~~~~~--~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 224 VVTSAQVKAVSVRGGGK--IITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred EEcCcEEEEEEEcCCEE--EEEEEeCCCceEEEeCEEEEeECCC
Confidence 99999999998633332 34432 23579999999999863
No 30
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.94 E-value=5.9e-25 Score=196.98 Aligned_cols=240 Identities=25% Similarity=0.445 Sum_probs=208.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
.+.+++|||-|++|..+..++.+......+|+++-.++...|.+..+.. .+.+ .... .++...-..|
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~-~~~~-----------edi~l~~~dw 68 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAG-EKTA-----------EDISLNRNDW 68 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCC-CccH-----------HHHhccchhh
Confidence 3468999999999999999999965456799999999988888765554 2211 1111 1113566789
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCe
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 209 (306)
+++.+++++.+..++.+|++.+.|.++.|..+.||.||+|||+.|..+| +|+.+.++++.++++.+.+.+.+.-+..++
T Consensus 69 y~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~ 147 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKK 147 (793)
T ss_pred HHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999655 999999999999999999888887666677
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC
Q 021871 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289 (306)
Q Consensus 210 v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~ 289 (306)
-+|||+|..++|.|..|...+.+++++.-.++++.+.+++.-...+.+.++++|+++++++..+.+- +.+++.++.++
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~--g~~~~~~vr~~ 225 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIV--GEDKVEGVRFA 225 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhh--cCcceeeEeec
Confidence 7999999999999999999999999999999999888899999999999999999999999888888 47777899999
Q ss_pred CCCEEecCEEEEecCC
Q 021871 290 DGSTIDADTVILLPYD 305 (306)
Q Consensus 290 ~G~~i~~d~vv~a~g~ 305 (306)
+|..+++|.||+|+|.
T Consensus 226 DG~~i~ad~VV~a~GI 241 (793)
T COG1251 226 DGTEIPADLVVMAVGI 241 (793)
T ss_pred CCCcccceeEEEeccc
Confidence 9999999999999985
No 31
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=7.4e-25 Score=198.14 Aligned_cols=242 Identities=19% Similarity=0.264 Sum_probs=156.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC-----C------C----CCCCC---
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL-----D------K----KPARL--- 111 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-----~------~----~~~~~--- 111 (306)
+.+||+||||||+|++||.+++++|+ +|+|+|+....+- .-.+.||+... . . ....+
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG--~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~ 76 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGG--TCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVK 76 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceee--eeccCcccccHHHHHHhHHHHHHhhhhhhhcCcccc
Confidence 35899999999999999999999998 9999997433221 00111111000 0 0 00000
Q ss_pred C--CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC-EEEcCCCc--EEecCcEEEeeCCCCccCCCC
Q 021871 112 P--GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGK--LLKYGSLIVATGCTASRFPEK 180 (306)
Q Consensus 112 ~--~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~-~v~~~~g~--~~~~~~lila~G~~~~~~~~~ 180 (306)
+ .+..... ..........+++.+++++.+. . +++.... .+...++. .++||+||+|||+.|.. +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---i 151 (466)
T PRK06115 77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---L 151 (466)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---C
Confidence 0 0000000 0000111223444567776553 2 3333222 33444553 69999999999998753 3
Q ss_pred CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (306)
Q Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
|+...++...+ +++..+.....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+++++. +++++.+.+.+.++
T Consensus 152 pg~~~~~~~~~----~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~ 226 (466)
T PRK06115 152 PGVTIDNQRII----DSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALT 226 (466)
T ss_pred CCCCCCCCeEE----CHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHH
Confidence 33223443333 33333333345899999999999999999999999999999999998886 78889999999999
Q ss_pred HcCCEEEcCceEEEEEeCCCCcEEEEEe-CC--CCEEecCEEEEecCCC
Q 021871 261 QNGVKFVKGASIKNLEAGSDGRVAAVKL-ED--GSTIDADTVILLPYDQ 306 (306)
Q Consensus 261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~-~~--G~~i~~d~vv~a~g~~ 306 (306)
++||++++++.|++++.++++....+.. .+ ++.+++|.||+|+|..
T Consensus 227 ~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 227 KQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred hcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 9999999999999998643443222332 12 3579999999999863
No 32
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.94 E-value=6.9e-25 Score=198.33 Aligned_cols=239 Identities=19% Similarity=0.300 Sum_probs=162.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------CC-----
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------LD----- 105 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~~----- 105 (306)
++||+|||||++|+.+|..++++|. +|+++|++..-+ ...+.||+.. ..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG---~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~ 74 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGG---AAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDG 74 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCC---cccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCc
Confidence 3689999999999999999999998 999999875321 1111122100 00
Q ss_pred CCCCCCCCccccc---CCCCCcCChhHHhhcCeEEEeCCcEEEEe--CCCC--EEEcCCCc--EEecCcEEEeeCCCCcc
Q 021871 106 KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSID--IEKQ--TLITNSGK--LLKYGSLIVATGCTASR 176 (306)
Q Consensus 106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~v~--~~~~--~v~~~~g~--~~~~~~lila~G~~~~~ 176 (306)
....+++...... .......+...+++.+++++.+ ++..++ .+.. .+.+.+|. .+.||+||+|||+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 75 EARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence 0000110000000 0000112334456678998876 455533 2233 45555664 79999999999999874
Q ss_pred CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (306)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
+| .++...+.+....++. +....+++++|||+|.+|+|+|..|++++.+|+++.+.+.+++. .++.+.+.+.
T Consensus 154 ~p-~~~~~~~~v~~~~~~~------~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~ 225 (466)
T PRK07845 154 LP-TAEPDGERILTWRQLY------DLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE 225 (466)
T ss_pred CC-CCCCCCceEEeehhhh------cccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence 33 2222222333322222 21234689999999999999999999999999999999998886 6888999999
Q ss_pred HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+.++++||+++++++|.+++.++ +.+ .+.+.+|+++++|.||+|+|.+
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCC
Confidence 99999999999999999998533 333 4777788899999999999863
No 33
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.93 E-value=7.7e-25 Score=200.15 Aligned_cols=229 Identities=24% Similarity=0.291 Sum_probs=159.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...+||+|||||+|||+||.+|++.|+ +|+|++.... |..... ....+++++......+....+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~G----------G~~~~~-~~~~~~~~~~~~~~~~l~~~l~~ 275 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIG----------GQVKDT-VGIENLISVPYTTGSQLAANLEE 275 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC----------CccccC-cCcccccccCCCCHHHHHHHHHH
Confidence 446899999999999999999999998 9999975311 011000 00001111111111222345666
Q ss_pred HHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHh
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 203 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~ 203 (306)
.+++.+++++.+++|.+++... ..+.+.++..+.||++|+|+|+.++. +.+++.. .+++.+.. .+ ...
T Consensus 276 ~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~---~~---~~~ 348 (515)
T TIGR03140 276 HIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCP---HC---DGP 348 (515)
T ss_pred HHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEee---cc---Chh
Confidence 6778899999998999987654 35667777789999999999998764 4455421 22333321 11 112
Q ss_pred hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCc
Q 021871 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR 282 (306)
Q Consensus 204 ~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~ 282 (306)
...+++++|+|+|.+|+|+|..|+..+.+|+++.+.+.+.. ...+.+.+++ .||++++++.|++++. ++++
T Consensus 349 ~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~ 420 (515)
T TIGR03140 349 FFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDK 420 (515)
T ss_pred hcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCE
Confidence 34588999999999999999999999999999988776543 2345666665 5999999999999985 4456
Q ss_pred EEEEEeCC---C--CEEecCEEEEecCCC
Q 021871 283 VAAVKLED---G--STIDADTVILLPYDQ 306 (306)
Q Consensus 283 v~~v~~~~---G--~~i~~d~vv~a~g~~ 306 (306)
+.+|.+.+ | +++++|.||+|+|..
T Consensus 421 v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 421 VTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 65676643 2 369999999999963
No 34
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.93 E-value=1.1e-24 Score=196.76 Aligned_cols=240 Identities=17% Similarity=0.279 Sum_probs=158.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCC------CCCCCCccccccccCC-----------CC--CCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY------APYERPALTKGYLFPL-----------DK--KPA 109 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~------~~~~~~~~~~~~~~~~-----------~~--~~~ 109 (306)
+.+||+|||||++|+.+|.+++++ |. +|++||++.. ..+...-++.||+.+. .. ...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 458999999999999999999997 88 9999997400 0111112222332110 00 000
Q ss_pred CC--------CCcccccC------CCCCcCChhHHhh-cCeEEEeCCcEEEEeCCCCEEEcCC--------CcEEecCcE
Q 021871 110 RL--------PGFHTCVG------SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSL 166 (306)
Q Consensus 110 ~~--------~~~~~~~~------~~~~~~~~~~~~~-~~v~~~~~~~v~~v~~~~~~v~~~~--------g~~~~~~~l 166 (306)
.+ ..|..+.. ..........+++ .+++++.+. .. ..+.+++.+.+ .+.+.||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~--f~~~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GA--LEDKNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EE--EccCCEEEEeeccCCCCCcceEEECCEE
Confidence 00 00100000 0001112222444 378887663 22 22344554431 247999999
Q ss_pred EEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCccc
Q 021871 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL 243 (306)
Q Consensus 167 ila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~~ 243 (306)
|+|||+.|.. |++ +|..... +.+..+.....+++++|||+|.+|+|+|..+..+ +.+|+++.+.++++
T Consensus 156 IIATGs~p~~-p~i-----~G~~~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 156 LLATGSWPQM-LGI-----PGIEHCI---SSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred EEecCCCCCC-CCC-----CChhhee---chhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 9999999864 443 4432221 2222222223578999999999999999877665 88999999999988
Q ss_pred ccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+. +++++.+.+.+.++++||++++++.|++++..+++. ..+.+.+|+.+++|.||+|+|..
T Consensus 227 ~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 227 RG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred cc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCC
Confidence 76 799999999999999999999999999998643443 35777778899999999999963
No 35
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.93 E-value=1.3e-24 Score=198.96 Aligned_cols=229 Identities=20% Similarity=0.252 Sum_probs=161.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...+||+|||||++||+||.+|++.|+ +++|+++.... .+.. .....+++++....+......+..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~GG----------~~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 274 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERFGG----------QVLD-TMGIENFISVPETEGPKLAAALEE 274 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCC----------eeec-cCcccccCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999998 99999764111 1100 000111222222222233456677
Q ss_pred HHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHh
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 203 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~ 203 (306)
.+++++++++.+++|..++... ..+.+.++..+.|+.+|+|+|..++. +.+|+.. ..++.+.. .+ ...
T Consensus 275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~---~~---~~~ 347 (517)
T PRK15317 275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCP---HC---DGP 347 (517)
T ss_pred HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEee---cc---Cch
Confidence 7888899999888999998763 46667777789999999999998764 4444421 12333221 11 112
Q ss_pred hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCc
Q 021871 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR 282 (306)
Q Consensus 204 ~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~ 282 (306)
...+++|+|+|+|++|+|+|..|+..+.+|+++.+.+.+.. . ..+.+.+.+ .||+++.++.+.++.. ++++
T Consensus 348 ~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~ 419 (517)
T PRK15317 348 LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDK 419 (517)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCc
Confidence 33688999999999999999999999999999999876543 2 234555654 6999999999999985 4466
Q ss_pred EEEEEeC---CCC--EEecCEEEEecCCC
Q 021871 283 VAAVKLE---DGS--TIDADTVILLPYDQ 306 (306)
Q Consensus 283 v~~v~~~---~G~--~i~~d~vv~a~g~~ 306 (306)
+..+.+. +|+ ++++|.+++|+|..
T Consensus 420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 420 VTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 6566654 233 59999999999863
No 36
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.93 E-value=2.5e-24 Score=195.20 Aligned_cols=239 Identities=20% Similarity=0.273 Sum_probs=158.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc-----------CCCC--CCCCC------
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF-----------PLDK--KPARL------ 111 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~------ 111 (306)
++||+|||||++|+++|++|+++|+ +|+|+|+. ..+-. + ...|+.. .... ....+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~~-~~GG~-~-~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~ 74 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGL---KVALVEKE-YLGGT-C-LNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVS 74 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCC---eEEEEecC-CCCCc-e-eecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCc
Confidence 3899999999999999999999998 99999993 32210 0 0111100 0000 00000
Q ss_pred CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC-cEEecCcEEEeeCCCCccCCCCCCCC
Q 021871 112 PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGY 184 (306)
Q Consensus 112 ~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g-~~~~~~~lila~G~~~~~~~~~~~~~ 184 (306)
..+..... ..........+++.+++++.+ ++..++.....+...++ ..+.||++|+|||+.+..+| .+ ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~ 151 (461)
T TIGR01350 75 VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FD 151 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CC
Confidence 00000000 000011123345567887765 44445544444544444 47999999999999987533 32 11
Q ss_pred CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (306)
Q Consensus 185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 264 (306)
.++. .+. +++........+++++|||+|.+|+++|..+.+.+.+|+++.+.+.+++. +++.+.+.+.+.++++||
T Consensus 152 ~~~~-~~~---~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi 226 (461)
T TIGR01350 152 FDGE-VVI---TSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGV 226 (461)
T ss_pred CCCc-eEE---cchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCC
Confidence 2222 121 22233332335789999999999999999999999999999999998875 788899999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871 265 KFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD 305 (306)
Q Consensus 265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~ 305 (306)
+++.++.|.+++.+ ++.+ .+++.+| +++++|.+|+|+|.
T Consensus 227 ~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 227 KILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred EEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCC
Confidence 99999999999863 4444 3666667 47999999999986
No 37
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=1.5e-24 Score=196.40 Aligned_cols=238 Identities=23% Similarity=0.328 Sum_probs=148.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC-----------CC---CCCCCC---
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL-----------DK---KPARLP--- 112 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~--- 112 (306)
..+||+|||||++|++||.+|+++|. +|+|+|++..-+ .-...|++... .. ....+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG---~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~ 76 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGG---VCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEV 76 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC---ceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCc
Confidence 35899999999999999999999998 999999863211 00111111000 00 000000
Q ss_pred --CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC--cEEecCcEEEeeCCCCccCCCCCC
Q 021871 113 --GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG 182 (306)
Q Consensus 113 --~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g--~~~~~~~lila~G~~~~~~~~~~~ 182 (306)
.+..... ..........++..+++...+ ...-++...-.+...++ ..++||+||+|||+.+..+| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p---g 152 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---G 152 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC---C
Confidence 0000000 000000011112234444332 11112222223333344 36899999999999987433 2
Q ss_pred CCCCC-EEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871 183 GYLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (306)
Q Consensus 183 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
.+..+ +.. ..........+++++|||+|.+|+|+|..+++++.+|+++.+.+++++. .++++...+.+.+++
T Consensus 153 ~~~~~~v~~------~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~ 225 (466)
T PRK07818 153 TSLSENVVT------YEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKK 225 (466)
T ss_pred CCCCCcEEc------hHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHH
Confidence 21112 221 1111111235789999999999999999999999999999999999886 688899999999999
Q ss_pred cCCEEEcCceEEEEEeCCCCcEEEEEe--CCC--CEEecCEEEEecCCC
Q 021871 262 NGVKFVKGASIKNLEAGSDGRVAAVKL--EDG--STIDADTVILLPYDQ 306 (306)
Q Consensus 262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G--~~i~~d~vv~a~g~~ 306 (306)
+||+++++++|++++. +++.+ .+.+ .+| +++++|.||+|+|..
T Consensus 226 ~gV~i~~~~~v~~i~~-~~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 226 LGVKILTGTKVESIDD-NGSKV-TVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred CCCEEEECCEEEEEEE-eCCeE-EEEEEecCCCeEEEEeCEEEECcCcc
Confidence 9999999999999985 33333 3443 356 369999999999863
No 38
>PRK07846 mycothione reductase; Reviewed
Probab=99.93 E-value=7.2e-24 Score=190.71 Aligned_cols=234 Identities=21% Similarity=0.348 Sum_probs=157.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc--------------------CCC--CCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--------------------PLD--KKP 108 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~--------------------~~~--~~~ 108 (306)
++|++|||||++|.++|.. ..|. +|.++|++..-+ .-++.||+. ... ...
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GG---tC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~ 72 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGG---TCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDG 72 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCC---cccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCc
Confidence 3799999999999999876 3587 999999864321 111112211 000 001
Q ss_pred CCCCCccccc---CCCCC-cCChhH-HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCC
Q 021871 109 ARLPGFHTCV---GSGGE-RQTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 183 (306)
Q Consensus 109 ~~~~~~~~~~---~~~~~-~~~~~~-~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~ 183 (306)
.++....... -.... ...... +++.+++++.+. ..-+ +.+++.+.+++.++||++|+|||+.+.. |++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~~-p~i~g~ 148 (451)
T PRK07846 73 VRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GPKTLRTGDGEEITADQVVIAAGSRPVI-PPVIAD 148 (451)
T ss_pred CCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cCCEEEECCCCEEEeCEEEEcCCCCCCC-CCCCCc
Confidence 1111110000 00111 112233 556788887663 3223 5678888777789999999999999874 555542
Q ss_pred CCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcC
Q 021871 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (306)
Q Consensus 184 ~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (306)
. +..++ +.+.+.+....+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+++. +++++.+.+.+.+ +.+
T Consensus 149 ~--~~~~~----~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~~ 220 (451)
T PRK07846 149 S--GVRYH----TSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SKR 220 (451)
T ss_pred C--CccEE----chHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hcC
Confidence 2 22111 22333333345789999999999999999999999999999999998875 6888887777654 568
Q ss_pred CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 264 v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
|+++++++|++++.+ ++.+ .+.+.+|+.+++|.||+|+|.+
T Consensus 221 v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 221 WDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred eEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCc
Confidence 999999999999863 4333 4777788899999999999964
No 39
>PRK13748 putative mercuric reductase; Provisional
Probab=99.93 E-value=1.1e-23 Score=195.29 Aligned_cols=238 Identities=17% Similarity=0.261 Sum_probs=157.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCC------------CCCCC--CC----
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL------------DKKPA--RL---- 111 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~------------~~~~~--~~---- 111 (306)
..+||+|||||++|+++|.+|++.|. +|+|+|++.. +-. -++.||+... ..... .+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~~-GG~--c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~ 170 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGTI-GGT--CVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATV 170 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCcc-eee--ccccCccccHHHHHHHHHHHHHhcccccCCccCCC
Confidence 35899999999999999999999998 9999998732 100 0011111000 00000 00
Q ss_pred CC--cccccCC------CCC-cCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCC
Q 021871 112 PG--FHTCVGS------GGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPE 179 (306)
Q Consensus 112 ~~--~~~~~~~------~~~-~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~ 179 (306)
+. +..+... ... ......+++. +++++.+ ++..++.....+.+.++. .+.||+||+|||+.+.. |+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~-p~ 248 (561)
T PRK13748 171 PTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAV-PP 248 (561)
T ss_pred CccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CC
Confidence 00 1000000 000 0111223343 6787765 566666555556655553 69999999999999874 55
Q ss_pred CCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHH
Q 021871 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259 (306)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
+++.+ ...++ +..........+++++|||+|.+|+|+|..+.+.+.+|+++.+.. +++. +++.+.+.+.+.+
T Consensus 249 i~g~~--~~~~~----~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~-~d~~~~~~l~~~l 320 (561)
T PRK13748 249 IPGLK--ETPYW----TSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST-LFFR-EDPAIGEAVTAAF 320 (561)
T ss_pred CCCCC--ccceE----ccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cccc-cCHHHHHHHHHHH
Confidence 55422 11122 122222223357899999999999999999999999999999854 4554 6889999999999
Q ss_pred HHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 260 ~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
++.||++++++.|++++. +++.+ .+.+.++ .+++|.||+|+|..
T Consensus 321 ~~~gI~i~~~~~v~~i~~-~~~~~-~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAH-VDGEF-VLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred HHCCCEEEcCCEEEEEEe-cCCEE-EEEecCC-eEEeCEEEEccCCC
Confidence 999999999999999985 34443 4666655 79999999999963
No 40
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.93 E-value=6.4e-24 Score=193.12 Aligned_cols=239 Identities=20% Similarity=0.252 Sum_probs=152.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC----CC--CCCCCccccccccCC--------------CCCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----YA--PYERPALTKGYLFPL--------------DKKPAR 110 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~----~~--~~~~~~~~~~~~~~~--------------~~~~~~ 110 (306)
.+||+||||||+|++||.+++++|+ +|+|+|+.. .. .+...-++.||+... ......
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 5899999999999999999999998 999999632 10 011111111221100 000000
Q ss_pred C-----CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCC---CcEEecCcEEEeeCCCCcc
Q 021871 111 L-----PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 111 ~-----~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~---g~~~~~~~lila~G~~~~~ 176 (306)
+ ..+..+.. ......+...++..++++..+ .... .+.+.+.+.+ +..++||+||+|||+.+..
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 0 00000000 000001111122245555543 2222 2334554432 3479999999999999875
Q ss_pred CCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 021871 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (306)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
++.+++.. . .. .+++.++.....+++++|||+|.+|+|+|..|+..+.+|+++.+. .+++. +++.+.+.+.
T Consensus 159 p~~i~G~~--~--~~---~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~~~~~~l~ 229 (499)
T PTZ00052 159 PEDVPGAK--E--YS---ITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDRQCSEKVV 229 (499)
T ss_pred CCCCCCcc--c--ee---ecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCHHHHHHHH
Confidence 43344321 1 11 133344443345789999999999999999999999999999874 55554 7889999999
Q ss_pred HHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 257 ~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+.++++||++++++.+.+++.. ++.+ .+.+.+|+++++|.||+|+|.+
T Consensus 230 ~~l~~~GV~i~~~~~v~~v~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 230 EYMKEQGTLFLEGVVPINIEKM-DDKI-KVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHcCCEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEcCEEEEeeCCC
Confidence 9999999999999999999853 3333 5777788889999999999964
No 41
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.92 E-value=9.5e-25 Score=195.61 Aligned_cols=234 Identities=15% Similarity=0.166 Sum_probs=150.6
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCC-ccc-------------cccccC-----CC-
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP-ALT-------------KGYLFP-----LD- 105 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~-~~~-------------~~~~~~-----~~- 105 (306)
+.+.++|+|||||++||+||++|++.|+ +|+|+|+++..+ |... ... .+.++. ..
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence 3456899999999999999999999998 999999987664 2111 000 000000 00
Q ss_pred --CCCCCCCCccc-----------ccCCCCCcCChhHHhhcCeE--EEeCCcEEEEeCCC--CEEEcCCC--c--EEecC
Q 021871 106 --KKPARLPGFHT-----------CVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEK--QTLITNSG--K--LLKYG 164 (306)
Q Consensus 106 --~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~v~~~~--~~v~~~~g--~--~~~~~ 164 (306)
....++|.... ....+...++..+.+++++. ++++++|.+++... +.+.+.++ . ...||
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence 00011111110 01122334566666778877 88899999998754 35655432 2 46799
Q ss_pred cEEEeeCC--CCccCCCCCCC-CCCCEE-EEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871 165 SLIVATGC--TASRFPEKIGG-YLPGVH-YIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (306)
Q Consensus 165 ~lila~G~--~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~ 240 (306)
.||+|+|. .|+ .|.++|. .++|.. +...+.+. ....+++|+|||+|.+|+|+|.+|+..+.+|+++.|..
T Consensus 164 ~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~-----~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVP-----DPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCc-----cccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 99999995 444 4665553 244421 22222222 22368999999999999999999999999999999875
Q ss_pred cccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
.... + ..+.....+++.+..|..+. +++ +|.+.||+.+++|.||+|||..
T Consensus 238 ~~~~----------~-~~~~~~~~~v~~~~~I~~~~--~~g---~V~f~DG~~~~~D~Ii~~TGy~ 287 (461)
T PLN02172 238 ESDT----------Y-EKLPVPQNNLWMHSEIDTAH--EDG---SIVFKNGKVVYADTIVHCTGYK 287 (461)
T ss_pred cccc----------c-ccCcCCCCceEECCccccee--cCC---eEEECCCCCccCCEEEECCcCC
Confidence 3211 0 11112234566677777766 334 3778999999999999999963
No 42
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=7.4e-24 Score=192.19 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=158.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC------CCCCCCCCcccccccc-----------C-CCC--CCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPYERPALTKGYLF-----------P-LDK--KPA 109 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~------~~~~~~~~~~~~~~~~-----------~-~~~--~~~ 109 (306)
..+|++|||||++|++||.++++.|. +|+|+|+. ...+- .-.+.+++. . ... ...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg--~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGG--TCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCC--ccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 35899999999999999999999998 99999981 11110 001111110 0 000 000
Q ss_pred CC--C----CcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeC--CCCEEEcC--CCcEEecCcEEEeeCCC
Q 021871 110 RL--P----GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCT 173 (306)
Q Consensus 110 ~~--~----~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~--~~~~v~~~--~g~~~~~~~lila~G~~ 173 (306)
.+ . .+..+.. ..........++..+++++.+ ++..++. +.+++.+. ++..++||+||+|||+.
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 00 0 0000000 000011223344567887755 4555553 24566654 34579999999999999
Q ss_pred CccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHH
Q 021871 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (306)
Q Consensus 174 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (306)
+..+|..+ ..+...+ +++..+.....+++++|+|+|.+|+|+|..+.+++.+|+++.+.+.+++. .++++.+
T Consensus 157 p~~~p~~~---~~~~~~~----~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~ 228 (475)
T PRK06327 157 PRHLPGVP---FDNKIIL----DNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAK 228 (475)
T ss_pred CCCCCCCC---CCCceEE----CcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHH
Confidence 86443221 2222222 23333333345789999999999999999999999999999999988875 6888999
Q ss_pred HHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC--C--CEEecCEEEEecCCC
Q 021871 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTVILLPYDQ 306 (306)
Q Consensus 254 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G--~~i~~d~vv~a~g~~ 306 (306)
.+.+.++++||++++++.|++++.++ +.+ .+.+.+ | +.+++|.+|+|+|..
T Consensus 229 ~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 229 EAAKAFTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence 99999999999999999999998643 333 354433 3 469999999999863
No 43
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=9.9e-24 Score=190.64 Aligned_cols=236 Identities=18% Similarity=0.242 Sum_probs=156.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC--------------------C----CCCC
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP--------------------L----DKKP 108 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~--------------------~----~~~~ 108 (306)
+|+|||||++|+++|.++++.|. +|+|+|++..-+ .-++.||+.. . ....
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG---~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 75 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGG---TCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSIS 75 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccc---cCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence 89999999999999999999998 999999975421 1111111110 0 0000
Q ss_pred CCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCC-cEEecCcEEEeeCCCCccCCCCCCCC
Q 021871 109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGY 184 (306)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g-~~~~~~~lila~G~~~~~~~~~~~~~ 184 (306)
.++........ ..........+++.++++..+ ++..++.....+..+++ ..++||+||+|||+.+..+| +++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~ 153 (458)
T PRK06912 76 IDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFD 153 (458)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCC
Confidence 01100000000 000011223344567887755 45445544434544455 37999999999999987443 33322
Q ss_pred CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCC
Q 021871 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (306)
Q Consensus 185 ~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 264 (306)
.+.+. ++....+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+++. .++++.+.+.+.++++||
T Consensus 154 ~~~v~------~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI 226 (458)
T PRK06912 154 GKWII------NSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGV 226 (458)
T ss_pred CCeEE------cchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCC
Confidence 22221 22333333345789999999999999999999999999999999998886 688899999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCCC
Q 021871 265 KFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYDQ 306 (306)
Q Consensus 265 ~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~~ 306 (306)
++++++.|++++. +++.+ .+.. +| .++++|.||+|+|..
T Consensus 227 ~i~~~~~V~~i~~-~~~~v-~~~~-~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 227 KIFTGAALKGLNS-YKKQA-LFEY-EGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred EEEECCEEEEEEE-cCCEE-EEEE-CCceEEEEeCEEEEecCCc
Confidence 9999999999985 33332 3443 34 369999999999963
No 44
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.92 E-value=4.1e-23 Score=187.05 Aligned_cols=238 Identities=20% Similarity=0.273 Sum_probs=154.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC---C---CCCCCccccccccCC-------------CCCCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY---A---PYERPALTKGYLFPL-------------DKKPARL 111 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~---~---~~~~~~~~~~~~~~~-------------~~~~~~~ 111 (306)
.+|++|||||++|+.+|..+++.|. +|+++|+... . .+...-++.||+... ......+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 4799999999999999999999998 9999997321 0 111111122222100 0000000
Q ss_pred -------CCcccccC------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEc--CCC--cEEecCcEEEeeCCCC
Q 021871 112 -------PGFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT--NSG--KLLKYGSLIVATGCTA 174 (306)
Q Consensus 112 -------~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~--~~g--~~~~~~~lila~G~~~ 174 (306)
..|..+.. ..........++..+++++.+ ...-++. .++.+ .++ ..++||+||+|||+.+
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDK--HRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 00000000 000112223456678888765 3333343 33433 233 3699999999999998
Q ss_pred ccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHH
Q 021871 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (306)
Q Consensus 175 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 254 (306)
.. |++| |.... ..+++.++.....+++++|||+|.+|+|+|..+++.+.+|+++.+ +.+++. +++++.+.
T Consensus 156 ~~-p~ip-----G~~~~--~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~~~~~ 225 (484)
T TIGR01438 156 RY-PGIP-----GAKEL--CITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQDCANK 225 (484)
T ss_pred CC-CCCC-----Cccce--eecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHHHHHH
Confidence 74 4444 33111 113344443334578999999999999999999999999999988 466654 78999999
Q ss_pred HHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC---CEEecCEEEEecCCC
Q 021871 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVILLPYDQ 306 (306)
Q Consensus 255 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G---~~i~~d~vv~a~g~~ 306 (306)
+.+.++++||++++++.+.+++.. ++.+ .|++.+| +++++|.||+|+|..
T Consensus 226 l~~~L~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 226 VGEHMEEHGVKFKRQFVPIKVEQI-EAKV-KVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHHHcCCEEEeCceEEEEEEc-CCeE-EEEEecCCcceEEEeCEEEEEecCC
Confidence 999999999999999999999863 3333 4555555 379999999999963
No 45
>PRK14727 putative mercuric reductase; Provisional
Probab=99.92 E-value=1.1e-23 Score=191.07 Aligned_cols=239 Identities=18% Similarity=0.200 Sum_probs=154.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC-------------CCCCCCC----CC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP-------------LDKKPAR----LP 112 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-------------~~~~~~~----~~ 112 (306)
.++||+|||||++|+++|+.|+++|. +|+++|+++..+-. -++.||+.. ...+... .+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~--c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 89 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGC--CVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP 89 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeE--eccccccccHHHHHHHHHHHHHhhccccCcccCCC
Confidence 46899999999999999999999998 99999987443210 001111100 0000000 01
Q ss_pred Cc--ccccC------CCCC-cCChhHHhhc-CeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCCC
Q 021871 113 GF--HTCVG------SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK 180 (306)
Q Consensus 113 ~~--~~~~~------~~~~-~~~~~~~~~~-~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~~ 180 (306)
.+ ..... .... ..+...++.. ++++..+ ...-++.....+...++. .++||+||+|||+.+.. |++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~-p~i 167 (479)
T PRK14727 90 SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTI-PPI 167 (479)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCC-CCC
Confidence 10 00000 0000 0112223333 6777655 333334333355555653 69999999999999874 444
Q ss_pred CCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH
Q 021871 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (306)
Q Consensus 181 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
++.+.. .++ +..........+++++|||+|.+|+|+|..+...+.+|+++.+. .+++. +++.+.+.+.+.++
T Consensus 168 ~G~~~~--~~~----~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~ 239 (479)
T PRK14727 168 PGLMDT--PYW----TSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFE 239 (479)
T ss_pred CCcCcc--cee----cchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHH
Confidence 442111 111 11112222234789999999999999999999999999999885 55554 68889999999999
Q ss_pred HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 261 ~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
++||++++++.|++++..+ +.+ .+.+.+| ++++|.||+|+|..
T Consensus 240 ~~GV~i~~~~~V~~i~~~~-~~~-~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 240 KEGIEVLNNTQASLVEHDD-NGF-VLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred hCCCEEEcCcEEEEEEEeC-CEE-EEEEcCC-eEEeCEEEEccCCC
Confidence 9999999999999998633 333 4666665 79999999999963
No 46
>PRK12831 putative oxidoreductase; Provisional
Probab=99.92 E-value=1.1e-23 Score=189.66 Aligned_cols=227 Identities=21% Similarity=0.277 Sum_probs=152.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
.+.+||+|||||++||++|++|+++|+ +|+|+|+.+..+ |.+.. ..+...++. ........+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~---~V~v~e~~~~~G--------G~l~~-gip~~~l~~------~~~~~~~~~ 199 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGY---DVTIFEALHEPG--------GVLVY-GIPEFRLPK------ETVVKKEIE 199 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCC--------Ceeee-cCCCccCCc------cHHHHHHHH
Confidence 456899999999999999999999998 999999876532 11110 000011111 001223346
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCC-cEEecCcEEEeeCC-CCccCCCCCCCCCCCEEEEccHHHHHHHHH----
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---- 202 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g-~~~~~~~lila~G~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---- 202 (306)
++++.++++++++.+. ..+.+++. ..+.||.|++|+|+ .++. +++++.+.+++....++........
T Consensus 200 ~~~~~gv~i~~~~~v~------~~v~~~~~~~~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~ 272 (464)
T PRK12831 200 NIKKLGVKIETNVVVG------KTVTIDELLEEEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMKAYKP 272 (464)
T ss_pred HHHHcCCEEEcCCEEC------CcCCHHHHHhccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcccccc
Confidence 6778899999886542 12222222 23569999999998 4654 5677776777765443333221111
Q ss_pred ----hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
....+++|+|||+|++|+|+|..+.+.+.+|+++++... .++. . ...+ +.+++.||++++++.+.++..
T Consensus 273 ~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a--~---~~e~-~~a~~eGV~i~~~~~~~~i~~ 346 (464)
T PRK12831 273 EYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA--R---VEEV-HHAKEEGVIFDLLTNPVEILG 346 (464)
T ss_pred cccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCC--C---HHHH-HHHHHcCCEEEecccceEEEe
Confidence 124578999999999999999999999999999998653 2221 1 1122 345778999999999999976
Q ss_pred CCCCcEEEEEeC------------------CCC--EEecCEEEEecCCC
Q 021871 278 GSDGRVAAVKLE------------------DGS--TIDADTVILLPYDQ 306 (306)
Q Consensus 278 ~~~~~v~~v~~~------------------~G~--~i~~d~vv~a~g~~ 306 (306)
+++|++.+|++. +|+ .+++|.||+|+|+.
T Consensus 347 ~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~ 395 (464)
T PRK12831 347 DENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS 395 (464)
T ss_pred cCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC
Confidence 556776665542 232 59999999999973
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.92 E-value=7.1e-24 Score=190.66 Aligned_cols=226 Identities=20% Similarity=0.240 Sum_probs=152.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||||++||++|..|++.|+ +|+|+|+.+..+ |.+.. ..+...++ . +.......
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~---~V~vie~~~~~G--------G~l~~-gip~~~~~--~-----~~~~~~~~ 191 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH---SVTVFEALHKPG--------GVVTY-GIPEFRLP--K-----EIVVTEIK 191 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCC--------cEeee-cCCCccCC--H-----HHHHHHHH
Confidence 456899999999999999999999998 999999876432 11110 00001111 0 01123345
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCC-CCccCCCCCCCCCCCEEEEccHHHHHHHHH-----
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS----- 202 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----- 202 (306)
.+.+.+++++.+..+ ...+.+++. ...||+|++|+|+ .+. .+.+|+.+.+++....++.....+..
T Consensus 192 ~l~~~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~ 263 (449)
T TIGR01316 192 TLKKLGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFP 263 (449)
T ss_pred HHHhCCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhccccccc
Confidence 567789999887643 222333322 2479999999998 455 45677766777665443332222111
Q ss_pred ----hhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871 203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (306)
Q Consensus 203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 278 (306)
....+++|+|||+|++|+|+|..+.+.+.+|+++++.+..... .. ....+.+++.||++++++.++++..+
T Consensus 264 ~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~-~~----~~~~~~l~~~GV~~~~~~~~~~i~~~ 338 (449)
T TIGR01316 264 HADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT-AR----VEEIAHAEEEGVKFHFLCQPVEIIGD 338 (449)
T ss_pred ccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC-CC----HHHHHHHHhCCCEEEeccCcEEEEEc
Confidence 1235689999999999999999999999999999987642111 11 22335678899999999999999754
Q ss_pred CCCcEEEEEeC---------CC-----------CEEecCEEEEecCCC
Q 021871 279 SDGRVAAVKLE---------DG-----------STIDADTVILLPYDQ 306 (306)
Q Consensus 279 ~~~~v~~v~~~---------~G-----------~~i~~d~vv~a~g~~ 306 (306)
++|++.+|++. +| .++++|.||+|+|+.
T Consensus 339 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 339 EEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG 386 (449)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence 56766666543 23 269999999999974
No 48
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.92 E-value=1.2e-23 Score=193.80 Aligned_cols=227 Identities=19% Similarity=0.252 Sum_probs=150.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
+.+||+|||||+|||+||.+|+++|+ +|+|+|++...+ .+... ....++|++....+......+...
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG---------~~~~~-~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGG---------QITIT-SEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCc---------eEEec-cccccCCCCcCCCHHHHHHHHHHH
Confidence 45899999999999999999999998 999999864321 11000 001122222111111122344555
Q ss_pred HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHHHHhh
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL 204 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~ 204 (306)
+++++++++ +.+|..++.+.. .+.+.++ .+.++++|+|||+.++. |++++.+ ..++.++... ....
T Consensus 70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~------~~~~ 140 (555)
T TIGR03143 70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATC------DGEF 140 (555)
T ss_pred HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeec------Chhh
Confidence 667888876 668888887653 4555555 58999999999999875 5555531 2334333211 1123
Q ss_pred hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEE
Q 021871 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284 (306)
Q Consensus 205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~ 284 (306)
..+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.+.. .... ..+.++.+||++++++.|+++.. ++.+.
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~~~~V~~i~~--~~~v~ 212 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKFNTELKEATG--DDGLR 212 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEeCCEEEEEEc--CCcEE
Confidence 4689999999999999999999999999999999886532 2222 22334457999999999999983 34333
Q ss_pred EEE---eCCCCEE----ecCE----EEEecCCC
Q 021871 285 AVK---LEDGSTI----DADT----VILLPYDQ 306 (306)
Q Consensus 285 ~v~---~~~G~~i----~~d~----vv~a~g~~ 306 (306)
.+. ..+|+.. ++|. ||+|+|.+
T Consensus 213 ~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~ 245 (555)
T TIGR03143 213 YAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYA 245 (555)
T ss_pred EEEEEECCCCCEEEEeccccccceEEEEEeCCC
Confidence 332 3456543 3666 99999974
No 49
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=7.3e-24 Score=192.06 Aligned_cols=236 Identities=21% Similarity=0.319 Sum_probs=151.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc--------------------CCCCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--------------------PLDKKPA 109 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 109 (306)
+.+||+|||||++|+++|.+|++.|+ +|+|+|++ ..+-. ....||+. .......
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~-~~GG~--~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~ 75 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKG-PLGGT--CLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGP 75 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCC-ccccc--eeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 46899999999999999999999998 99999994 32210 00111110 0000000
Q ss_pred CCCCcccccC------CCCCcCC-hhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCC
Q 021871 110 RLPGFHTCVG------SGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG 182 (306)
Q Consensus 110 ~~~~~~~~~~------~~~~~~~-~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~ 182 (306)
...+..+.. ......+ ...++..++++..+ +...++ ...+.+ ++..+.||++|+|||+. .|.+|+
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~---~p~ipg 147 (460)
T PRK06292 76 -KIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR---VPPIPG 147 (460)
T ss_pred -ccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC---CCCCCC
Confidence 001111000 0000111 12234456666543 333333 234444 56689999999999998 244444
Q ss_pred CCC-CCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871 183 GYL-PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (306)
Q Consensus 183 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
... .+...+ +++...+....+++++|||+|.+|+|+|..+.+.+.+|+++.+.+++++. +++++.+.+.+.+++
T Consensus 148 ~~~~~~~~~~----~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~ 222 (460)
T PRK06292 148 VWLILGDRLL----TSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSK 222 (460)
T ss_pred CcccCCCcEE----CchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhh
Confidence 211 111111 22333322345789999999999999999999999999999999998875 788999999999999
Q ss_pred cCCEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCCC
Q 021871 262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYDQ 306 (306)
Q Consensus 262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~~ 306 (306)
+ |++++++.|++++..++..+ .++..+| +++++|.+|+|+|..
T Consensus 223 ~-I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 223 E-FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred c-cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCc
Confidence 9 99999999999985333222 2333333 479999999999863
No 50
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.91 E-value=3.1e-22 Score=179.73 Aligned_cols=224 Identities=23% Similarity=0.356 Sum_probs=166.9
Q ss_pred HHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCC-hhHHhhcCeEEEeCCcE
Q 021871 65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PEWYKEKGIEMIYQDPV 143 (306)
Q Consensus 65 ~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v 143 (306)
+||++|++.+ ++.+|+|+|+++.+.|....++. +.......... ...+. .+++.+.+++++.+.+|
T Consensus 1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~-----------~~~~~~~~~~~~~gv~~~~~~~V 67 (427)
T TIGR03385 1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNK-----------LLAYTPEVFIKKRGIDVKTNHEV 67 (427)
T ss_pred CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCe-EeccccCCHHH-----------cccCCHHHHHHhcCCeEEecCEE
Confidence 4789998875 46799999999877654322221 11110000000 01222 34458889999888999
Q ss_pred EEEeCCCCEEEcCC---CcEEe--cCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh--hcCCeEEEEcCC
Q 021871 144 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG 216 (306)
Q Consensus 144 ~~v~~~~~~v~~~~---g~~~~--~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~v~viG~g 216 (306)
..++...+.+.+.+ +..+. ||+||+|||+.+.. |++++.+.+++....++.+...+...+ ..+++++|+|+|
T Consensus 68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~-~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 99998888776643 34677 99999999999874 556665556666667777766666555 357899999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEec
Q 021871 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296 (306)
Q Consensus 217 ~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~ 296 (306)
.+|+|+|..+++.+.+|+++.+.+.++...+++.+.+.+.+.++++||+++.++.|.+++. ++.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence 9999999999999999999999988754346788889999999999999999999999984 3333 45677889999
Q ss_pred CEEEEecCCC
Q 021871 297 DTVILLPYDQ 306 (306)
Q Consensus 297 d~vv~a~g~~ 306 (306)
|.+|+|+|..
T Consensus 223 D~vi~a~G~~ 232 (427)
T TIGR03385 223 DMVILATGIK 232 (427)
T ss_pred CEEEECCCcc
Confidence 9999999963
No 51
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.91 E-value=2.2e-22 Score=186.23 Aligned_cols=148 Identities=20% Similarity=0.288 Sum_probs=109.4
Q ss_pred CEEEc-CCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC
Q 021871 151 QTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 229 (306)
Q Consensus 151 ~~v~~-~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~ 229 (306)
.++.. .++..+.||+||+|||+.|.. |+.++.+.+.+.. ++...+....+++++|||+|.+|+|+|..+...
T Consensus 262 ~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~t------s~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~ 334 (659)
T PTZ00153 262 NTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFT------SDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTAL 334 (659)
T ss_pred CeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEe------hHHhhhhhhcCCceEEECCCHHHHHHHHHHHhC
Confidence 34443 356689999999999999874 4333322233332 223222223478999999999999999999999
Q ss_pred CCcEEEEecCCcccccccCHHHHHHHHHHH-HHcCCEEEcCceEEEEEeCCCCcEEEEEeCC-------C--------CE
Q 021871 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED-------G--------ST 293 (306)
Q Consensus 230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-------G--------~~ 293 (306)
+.+|+++.+.+++++. +++++.+.+.+.+ +++||++++++.|++|+..+++..+.+.+.+ + ++
T Consensus 335 G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~ 413 (659)
T PTZ00153 335 GSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE 413 (659)
T ss_pred CCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE
Confidence 9999999999999986 7888888888875 6789999999999999864333322344321 1 26
Q ss_pred EecCEEEEecCCC
Q 021871 294 IDADTVILLPYDQ 306 (306)
Q Consensus 294 i~~d~vv~a~g~~ 306 (306)
+++|.||||+|.+
T Consensus 414 i~aD~VlvAtGr~ 426 (659)
T PTZ00153 414 TYVDSCLVATGRK 426 (659)
T ss_pred EEcCEEEEEECcc
Confidence 9999999999964
No 52
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.91 E-value=2.9e-23 Score=187.60 Aligned_cols=225 Identities=24% Similarity=0.280 Sum_probs=148.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||||++||++|..|+++|+ +|+|+|+.+..+ |.+.. ..+...++ .+.......
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~---~V~lie~~~~~g--------G~l~~-gip~~~~~-------~~~~~~~~~ 198 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGY---DVTIFEARDKAG--------GLLRY-GIPEFRLP-------KDIVDREVE 198 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCC--------cEeec-cCCCccCC-------HHHHHHHHH
Confidence 456899999999999999999999998 999999986542 11100 00000111 011234456
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHH---Hhhh
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLE 205 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~ 205 (306)
++++.+++++.++.+. ..+.+++. .+.||+||+|||+.....+.+++.+.+++....++....... ....
T Consensus 199 ~l~~~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~ 271 (457)
T PRK11749 199 RLLKLGVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLP 271 (457)
T ss_pred HHHHcCCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCC
Confidence 6777899998886541 12222222 268999999999864334556665566665432222221110 1123
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v 283 (306)
.+++|+|||+|.+|+|+|..+...+. +|+++.+.+. .++. .. ...+.+++.||++++++.+.++..+ ++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~ 344 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGD-EGRV 344 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEec-CCce
Confidence 57899999999999999999999886 8999998654 2221 22 2346678899999999999999853 3332
Q ss_pred EEEEe-------------------CCCCEEecCEEEEecCCC
Q 021871 284 AAVKL-------------------EDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 284 ~~v~~-------------------~~G~~i~~d~vv~a~g~~ 306 (306)
.+|++ .+++++++|.||+|+|+.
T Consensus 345 ~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 386 (457)
T PRK11749 345 TGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386 (457)
T ss_pred EEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence 23332 123479999999999963
No 53
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.91 E-value=4.2e-22 Score=179.43 Aligned_cols=231 Identities=21% Similarity=0.351 Sum_probs=154.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcccccccc--------------------CCC--CCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--------------------PLD--KKP 108 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~--------------------~~~--~~~ 108 (306)
++|++|||+|++|..+|.. ..|. +|+++|++..-+ .-++.||+. ... ...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~---~V~lie~~~~GG---tC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~ 73 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADK---RIAIVEKGTFGG---TCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDS 73 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCC---eeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCc
Confidence 5899999999999998654 4687 999999864321 111112210 000 001
Q ss_pred CCCCCcccccCCC-------CCcCChhHH---hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCC
Q 021871 109 ARLPGFHTCVGSG-------GERQTPEWY---KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178 (306)
Q Consensus 109 ~~~~~~~~~~~~~-------~~~~~~~~~---~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~ 178 (306)
.+ |..+.... .......+. ++.+++++.+..+.. +.+++.+.++..++||+||+|||+.|.. |
T Consensus 74 ~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p 146 (452)
T TIGR03452 74 VR---WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-P 146 (452)
T ss_pred cC---HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-C
Confidence 11 11111111 001111111 236888887654432 5667888777789999999999999874 3
Q ss_pred CCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHH
Q 021871 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258 (306)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
+..+ ..+..++ +.+...+....+++++|||+|.+|+|+|..+...+.+|+++.+.+.+++. +++++...+.+.
T Consensus 147 ~~~~--~~~~~~~----~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~ 219 (452)
T TIGR03452 147 PAIA--DSGVRYH----TNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEI 219 (452)
T ss_pred CCCC--CCCCEEE----cHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHH
Confidence 3222 1233222 22233332335789999999999999999999999999999999988775 688888777765
Q ss_pred HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 259 ~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+ +.||++++++.|++++.+ ++.+ .+++.+|+++++|.+|+|+|..
T Consensus 220 ~-~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 220 A-KKKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred H-hcCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccC
Confidence 4 468999999999999863 3333 4777788889999999999863
No 54
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.90 E-value=1.2e-22 Score=195.11 Aligned_cols=227 Identities=19% Similarity=0.197 Sum_probs=153.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||||||||+||++|+++|+ +|+|+|+.+.. +|.+.. .-+.+.+| .+.......
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~---~VtVfE~~~~~--------GG~l~y-GIP~~rlp-------~~vi~~~i~ 364 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGF---PVTVFEAFHDL--------GGVLRY-GIPEFRLP-------NQLIDDVVE 364 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEeeCCCC--------CceEEc-cCCCCcCh-------HHHHHHHHH
Confidence 346899999999999999999999999 99999987653 222211 01111111 001123345
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHh-----
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS----- 203 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----- 203 (306)
.+++.|++++.+..+ +..+.+++.....||.|++|+|+...+.+.+||.+.+|+....++.........
T Consensus 365 ~l~~~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~ 438 (944)
T PRK12779 365 KIKLLGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDY 438 (944)
T ss_pred HHHhhcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccc
Confidence 677789999887544 234555555556899999999996333466788778888765544433221110
Q ss_pred -----hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 204 -----LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 204 -----~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
...+++|+|||+|++|+|.|..+.+.+.+|+++++.+. .++ .....+.. ..+.||++++++.++++..
T Consensus 439 ~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp-----a~~~e~~~-a~eeGV~~~~~~~p~~i~~ 512 (944)
T PRK12779 439 ETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP-----ARVEELHH-ALEEGINLAVLRAPREFIG 512 (944)
T ss_pred cccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccc-----ccHHHHHH-HHHCCCEEEeCcceEEEEe
Confidence 12478999999999999999999999999999998753 222 12233333 3567999999999999874
Q ss_pred CC-CCcEEEEEe---------C--------CC--CEEecCEEEEecCCC
Q 021871 278 GS-DGRVAAVKL---------E--------DG--STIDADTVILLPYDQ 306 (306)
Q Consensus 278 ~~-~~~v~~v~~---------~--------~G--~~i~~d~vv~a~g~~ 306 (306)
++ ++++.++++ . .| .++++|.||+|+|+.
T Consensus 513 d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 513 DDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred cCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 32 335544432 1 23 259999999999963
No 55
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.90 E-value=1.5e-23 Score=190.25 Aligned_cols=181 Identities=20% Similarity=0.288 Sum_probs=111.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCC--------cccccc---------ccCCCCCCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP--------ALTKGY---------LFPLDKKPARLP 112 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~~~---------~~~~~~~~~~~~ 112 (306)
++|+|||||++||++|+.|.+.|+ +++++|+++..+ |... .+..+. .++....+.++|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 689999999999999999999999 999999998876 3210 011111 122223333444
Q ss_pred CcccccCCCCCcCChhHHhhcCe--EEEeCCcEEEEeCCC-------CEEEcCC-Cc--EEecCcEEEeeCCCCcc-CCC
Q 021871 113 GFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTASR-FPE 179 (306)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~v~~~~-------~~v~~~~-g~--~~~~~~lila~G~~~~~-~~~ 179 (306)
.|.. ..+...++..+++++++ .++++++|.++.... +.+.+++ +. ...||+|++|+|..... +|.
T Consensus 79 ~f~~--~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 79 DFPS--HSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp SSEB--HHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB--
T ss_pred CCCC--HHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh
Confidence 4432 12233566777777776 478899999997532 3566653 32 56799999999976431 232
Q ss_pred --CCCC-CCCCEEEEccHHHHHHHH-HhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871 180 --KIGG-YLPGVHYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (306)
Q Consensus 180 --~~~~-~~~g~~~~~~~~~~~~~~-~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~ 242 (306)
+||. .++|... ++..+. ....++|+|+|||+|.||+|+|.+++..+.+|++..|...+
T Consensus 157 ~~~~G~e~F~G~i~-----HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~w 218 (531)
T PF00743_consen 157 PSFPGLEKFKGEII-----HSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAW 218 (531)
T ss_dssp ---CTGGGHCSEEE-----EGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----
T ss_pred hhhhhhhcCCeeEE-----ccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccc
Confidence 3332 1333221 222222 23357999999999999999999999999999988887664
No 56
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.90 E-value=1.4e-22 Score=193.04 Aligned_cols=226 Identities=21% Similarity=0.254 Sum_probs=152.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||||+|||+||.+|+++|+ +|+|+|+.+..+ |.+.. .-+...+|. . ......+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~---~V~v~e~~~~~G--------G~l~~-gip~~rlp~--~-----~~~~~~~ 489 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY---DVTVFEALHEIG--------GVLKY-GIPEFRLPK--K-----IVDVEIE 489 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCCCC--------Ceeee-cCCCCCCCH--H-----HHHHHHH
Confidence 346799999999999999999999998 999999865431 11110 001111111 0 1123345
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCC-CccCCCCCCCCCCCEEEEccHHHHHHHHH-----
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS----- 202 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----- 202 (306)
.+.+.+++++.+..+ ...+.+++.....||.|++|+|+. ++ .+.+|+.+.+++....++........
T Consensus 490 ~l~~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~ 562 (752)
T PRK12778 490 NLKKLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPD 562 (752)
T ss_pred HHHHCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhccccccc
Confidence 677789999887544 223334333356799999999985 55 45677777777765544333222111
Q ss_pred ---hhhcCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 203 ---SLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 203 ---~~~~~~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
....+++|+|||+|++|+|+|..+.+.+.+ |+++++.+. .++. . ...+ +.++++||++++++.+.++..
T Consensus 563 ~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~--~---~~e~-~~~~~~GV~i~~~~~~~~i~~ 636 (752)
T PRK12778 563 SDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA--R---LEEV-KHAKEEGIEFLTLHNPIEYLA 636 (752)
T ss_pred ccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--C---HHHH-HHHHHcCCEEEecCcceEEEE
Confidence 123568999999999999999999999887 999998754 2221 1 1112 346788999999999999876
Q ss_pred CCCCcEEEEEeC---------CC-----------CEEecCEEEEecCCC
Q 021871 278 GSDGRVAAVKLE---------DG-----------STIDADTVILLPYDQ 306 (306)
Q Consensus 278 ~~~~~v~~v~~~---------~G-----------~~i~~d~vv~a~g~~ 306 (306)
++++++.+|++. +| .++++|.||+|+|+.
T Consensus 637 ~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 637 DEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred CCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 556776666542 22 259999999999963
No 57
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.89 E-value=7.4e-22 Score=187.44 Aligned_cols=222 Identities=23% Similarity=0.321 Sum_probs=142.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||||+|||++|++|+++|+ +|+|+|+.+..+ |.+.. . +|++.. ..+......+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~---~VtV~Ek~~~~G--------G~lr~-~-----IP~~Rl--p~evL~~die 597 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH---PVTVFEREENAG--------GVVKN-I-----IPQFRI--PAELIQHDIE 597 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecccccC--------cceee-e-----cccccc--cHHHHHHHHH
Confidence 356899999999999999999999998 999999886642 11110 0 111100 0000122345
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEcc-HHHHHHHHHhhhcC
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD-VADADALISSLEKA 207 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 207 (306)
++.+.|+++++++.+ .++ +++.....||+||+|||+.+...+.+++.+ +++....+ +.+..........+
T Consensus 598 ~l~~~GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~G 668 (1019)
T PRK09853 598 FVKAHGVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLG 668 (1019)
T ss_pred HHHHcCCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCC
Confidence 677789999988766 222 222334569999999999865444444432 33332111 11111112223468
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-C-CcEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE-
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV- 283 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~-~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v- 283 (306)
++|+|||+|++|+|+|..+.+. + .+|++++|.+. .++. ..+.+.+.+ ++||+++..+.+.++.. ++++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-----~~eEle~Al-eeGVe~~~~~~p~~I~~--dG~l~ 740 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-----WREEYEEAL-EDGVEFKELLNPESFDA--DGTLT 740 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-----cHHHHHHHH-HcCCEEEeCCceEEEEc--CCcEE
Confidence 9999999999999999998877 3 48999998763 3332 223344443 57999999998888863 3322
Q ss_pred ---------------EEEEeCCCCEEecCEEEEecCCC
Q 021871 284 ---------------AAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 284 ---------------~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
..+.+.++.++++|.||+|+|++
T Consensus 741 ~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred EEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 11233344579999999999974
No 58
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=2.1e-22 Score=165.63 Aligned_cols=241 Identities=20% Similarity=0.307 Sum_probs=170.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-------CC------CCcc-------ccccccCC-CCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YE------RPAL-------TKGYLFPL-DKK 107 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-------~~------~~~~-------~~~~~~~~-~~~ 107 (306)
...+|+++||||.+|+.+|++.++.|- ++.++|-.-..+ +. .... ...+-++. ...
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 346899999999999999999999997 899998652111 00 0000 00011111 111
Q ss_pred CCCCCCcccccCCCCCcCChh----HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCCCC
Q 021871 108 PARLPGFHTCVGSGGERQTPE----WYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (306)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~~~ 181 (306)
.++|..++..++ .....+.. .+.+.++++..+ ...-+++.+-.+...++. .+.++++++|+|..|.. |.
T Consensus 95 ~fdW~~ik~krd-ayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~-Pn-- 169 (478)
T KOG0405|consen 95 SFDWKVIKQKRD-AYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPII-PN-- 169 (478)
T ss_pred CCcHHHHHhhhh-HHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCC-CC--
Confidence 122221111110 00111222 233345666655 333344444467777774 47899999999999874 54
Q ss_pred CCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH
Q 021871 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (306)
Q Consensus 182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
+||.++. .+++.+++....+++++|+|+|++|+|+|.-++..+.+++++-|++.++.. +++.+.+.+.+.++.
T Consensus 170 ---IpG~E~g---idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~~ 242 (478)
T KOG0405|consen 170 ---IPGAELG---IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLEG 242 (478)
T ss_pred ---CCchhhc---cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhhh
Confidence 6776543 367777877788999999999999999999999999999999999999987 899999999999999
Q ss_pred cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 262 ~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+||++++++.++++..++++.. .+.+..|....+|.++||+|.
T Consensus 243 ~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR 285 (478)
T KOG0405|consen 243 RGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGR 285 (478)
T ss_pred cceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecC
Confidence 9999999999999998777755 466677755559999999996
No 59
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.88 E-value=7.4e-22 Score=166.79 Aligned_cols=229 Identities=21% Similarity=0.383 Sum_probs=168.2
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (306)
..++++|||+|+||+|.++++.|....+ +|++|++++++.|. |.++.-...+.+. ......+.
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve~-------------rSIvEPIr 114 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVEL-------------RSIVEPIR 114 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCccccceee-------------hhhhhhHH
Confidence 4567899999999999999999977776 99999999987665 2222211111110 01112233
Q ss_pred hHHhhc--CeEEEeCCcEEEEeCCCCEEEcC----CC----cEEecCcEEEeeCCCCccCCCCCCCCCCCE----EEEcc
Q 021871 128 EWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGV----HYIRD 193 (306)
Q Consensus 128 ~~~~~~--~v~~~~~~~v~~v~~~~~~v~~~----~g----~~~~~~~lila~G~~~~~~~~~~~~~~~g~----~~~~~ 193 (306)
....+. ++.++ ..+...+|++.+.+.+. ++ -.+.|||||+|+|+++..+. +||+ +++++
T Consensus 115 ~i~r~k~~~~~y~-eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg------ipGV~e~~~FLKE 187 (491)
T KOG2495|consen 115 AIARKKNGEVKYL-EAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG------IPGVEENAHFLKE 187 (491)
T ss_pred HHhhccCCCceEE-ecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC------CCchhhchhhhhh
Confidence 333333 34554 55888899988866543 33 37899999999999998755 6665 35567
Q ss_pred HHHHHHHHHhhh-----------------cCCeEEEEcCCHHHHHHHHHHHhC--------------CCcEEEEecCCcc
Q 021871 194 VADADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHL 242 (306)
Q Consensus 194 ~~~~~~~~~~~~-----------------~~~~v~viG~g~~a~e~a~~l~~~--------------~~~v~~~~~~~~~ 242 (306)
+++++.++..+. .-.+++|||||++|+|+|.+|+.. ..+||++...+.+
T Consensus 188 v~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 188 VEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence 778777654331 233689999999999999999865 2478999999999
Q ss_pred cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871 243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD 305 (306)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~ 305 (306)
++. ++..+.+..++.+.+.||++..++.|+.+++ ... .+.+.+| +.|++-.+|||||.
T Consensus 268 L~m-Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~I--~~~~~~g~~~~iPYG~lVWatG~ 327 (491)
T KOG2495|consen 268 LNM-FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KTI--HAKTKDGEIEEIPYGLLVWATGN 327 (491)
T ss_pred HHH-HHHHHHHHHHHHhhhccceeecccEEEeecC--cEE--EEEcCCCceeeecceEEEecCCC
Confidence 985 8999999999999999999999999999984 222 3455566 46999999999996
No 60
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.88 E-value=8.2e-21 Score=184.95 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=151.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..+||+|||||||||+||.+|++.|+ +|+|+|+.+..+ |.++... ...++... .+....+...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~G--------G~~~~~~---~~~~g~~~---~~~~~~~~~~ 224 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAG--------GSLLSEA---ETIDGKPA---ADWAAATVAE 224 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCC--------Ceeeccc---cccCCccH---HHHHHHHHHH
Confidence 35799999999999999999999998 999999986642 1111100 00111000 0000122233
Q ss_pred Hhhc-CeEEEeCCcEEEEeCCCCEEEc-----------CC---C--cEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEc
Q 021871 130 YKEK-GIEMIYQDPVTSIDIEKQTLIT-----------NS---G--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR 192 (306)
Q Consensus 130 ~~~~-~v~~~~~~~v~~v~~~~~~v~~-----------~~---g--~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~ 192 (306)
+.+. +++++.+++|..+......... .+ . ..+.|+.||+|||+.++ ++++++.+.+++....
T Consensus 225 l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r-~~pipG~~~pgV~~~~ 303 (985)
T TIGR01372 225 LTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER-PLVFANNDRPGVMLAG 303 (985)
T ss_pred HhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc-CCCCCCCCCCCcEEch
Confidence 3334 4888888888877543221000 00 1 15899999999999987 4667887788877643
Q ss_pred cHHHHHHHHH--hhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcC
Q 021871 193 DVADADALIS--SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG 269 (306)
Q Consensus 193 ~~~~~~~~~~--~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~ 269 (306)
.. +.+.+ ....+++++|+|+|.+++++|..|.+.+. .|+++.+.+.+ ...+.+.+++.||+++++
T Consensus 304 ~~---~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~ 371 (985)
T TIGR01372 304 AA---RTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTG 371 (985)
T ss_pred HH---HHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcC
Confidence 22 22222 12357899999999999999999999995 57788765432 224567788999999999
Q ss_pred ceEEEEEeCCCCcEEEEEeC----CCCEEecCEEEEecCCC
Q 021871 270 ASIKNLEAGSDGRVAAVKLE----DGSTIDADTVILLPYDQ 306 (306)
Q Consensus 270 ~~v~~i~~~~~~~v~~v~~~----~G~~i~~d~vv~a~g~~ 306 (306)
+.|+++.. ++.+.+|++. +++++++|.|++++|..
T Consensus 372 ~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 372 HVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred CeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 99999983 4444455543 45679999999999863
No 61
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.88 E-value=1.2e-21 Score=163.09 Aligned_cols=244 Identities=18% Similarity=0.302 Sum_probs=165.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC---------CCccccccccCCC-------------CC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------RPALTKGYLFPLD-------------KK 107 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~---------~~~~~~~~~~~~~-------------~~ 107 (306)
..+||+|||+||+|..||.+.++.|+ +...+|++...+-. ...++.++++... ..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 46999999999999999999999999 88889997664310 0111122221100 11
Q ss_pred CCCCCCcccccC---CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCccCCCCCC
Q 021871 108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (306)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~~~~~~~ 182 (306)
..+++.+..... ..+...+...+++.++.+..+.. .-.++..-.+...||. .+.++++|+|||+.- +++||
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV---~~~PG 190 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV---TPFPG 190 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCcc---CCCCC
Confidence 111111110000 11112233335556666654421 1123322233334443 789999999999873 33444
Q ss_pred CCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHc
Q 021871 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (306)
Q Consensus 183 ~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
..+++-- +.+++...+...-++++.|+|+|.+|+|++.-..+.|.+||++.-.+.+++. .++++...+++.|+.+
T Consensus 191 I~IDekk----IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 191 ITIDEKK----IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQ 265 (506)
T ss_pred eEecCce----EEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhc
Confidence 3333322 2244444455557999999999999999999999999999999999999997 8999999999999999
Q ss_pred CCEEEcCceEEEEEeCCCCcEEEEEeCCC-----CEEecCEEEEecCCC
Q 021871 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTVILLPYDQ 306 (306)
Q Consensus 263 gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-----~~i~~d~vv~a~g~~ 306 (306)
|+++.++++|..++.++||.+ .+++++. ++++||.+++|+|.+
T Consensus 266 gikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred CceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCc
Confidence 999999999999998777754 4666443 379999999999964
No 62
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.88 E-value=1e-20 Score=165.50 Aligned_cols=228 Identities=22% Similarity=0.218 Sum_probs=144.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..++|+|||||++|+++|..|++.|+ +|+++|+.+..+. .+... ......+ . +........
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg--------~~~~~-~~~~~~~-~------~~~~~~~~~ 77 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGG--------LMLFG-IPEFRIP-I------ERVREGVKE 77 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCc--------eeeec-CcccccC-H------HHHHHHHHH
Confidence 35799999999999999999999998 9999999766421 11100 0000000 0 001123344
Q ss_pred HhhcCeEEEeCCcEEEEeC----CCCE-----EEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHH
Q 021871 130 YKEKGIEMIYQDPVTSIDI----EKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~----~~~~-----v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 200 (306)
+.+.+++++.++.+..++. .... +..+ +..++||+||+|||+.....|++|+.+.+++....+. ...+
T Consensus 78 l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~--~~~~ 154 (352)
T PRK12770 78 LEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEY--LFRI 154 (352)
T ss_pred HHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHH--HHHh
Confidence 5566899988877654432 0111 1111 1236899999999995333466666555555432111 1111
Q ss_pred HH---------h--hhcCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEc
Q 021871 201 IS---------S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (306)
Q Consensus 201 ~~---------~--~~~~~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~ 268 (306)
.. . ...+++++|+|+|.+++|+|..+...+.+ |+++.+.+..... . .....+.++++||++++
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~----~~~~~~~l~~~gi~i~~ 229 (352)
T PRK12770 155 RAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-A----GKYEIERLIARGVEFLE 229 (352)
T ss_pred hhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-C----CHHHHHHHHHcCCEEee
Confidence 10 0 11258999999999999999999988886 9999887543221 1 12344568899999999
Q ss_pred CceEEEEEeCCCCcEEEEEe--------------------CCCCEEecCEEEEecCCC
Q 021871 269 GASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 269 ~~~v~~i~~~~~~~v~~v~~--------------------~~G~~i~~d~vv~a~g~~ 306 (306)
++.+++++. + +.+..|++ .+++.+++|.+|+|+|.+
T Consensus 230 ~~~v~~i~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 230 LVTPVRIIG-E-GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred ccCceeeec-C-CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 999999984 2 33434432 123479999999999863
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.88 E-value=2.2e-21 Score=188.08 Aligned_cols=225 Identities=18% Similarity=0.222 Sum_probs=149.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..++|+|||||||||++|.+|+++|+ +|+|+|+.+..+ |.+.. ..+...++ .+......+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~---~VtV~E~~~~~G--------G~l~~-gip~~rl~-------~e~~~~~~~~ 489 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV---DVTVYEALHVVG--------GVLQY-GIPSFRLP-------RDIIDREVQR 489 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCc--------ceeec-cCCccCCC-------HHHHHHHHHH
Confidence 45799999999999999999999999 999999876542 11110 00111111 0112345566
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCc-EEecCcEEEeeCCC-CccCCCCCCCCCCCEEEEccHHHHHHHH------
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALI------ 201 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~-~~~~~~lila~G~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~------ 201 (306)
+++.|++++.+..+ .. .+.+.+.. ...||.||+|||+. ++ .+++||.+.+++....++.....+.
T Consensus 490 l~~~Gv~~~~~~~v-g~-----~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~ 562 (1006)
T PRK12775 490 LVDIGVKIETNKVI-GK-----TFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFP 562 (1006)
T ss_pred HHHCCCEEEeCCcc-CC-----ccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccc
Confidence 78889999988543 11 12211111 24699999999996 45 4667777777776554333322211
Q ss_pred ---HhhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871 202 ---SSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276 (306)
Q Consensus 202 ---~~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 276 (306)
.....+++|+|||+|++|+|.|..+.+.|. .|++++|.... ++. . .. -.+.+++.||++++++.+.++.
T Consensus 563 ~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a--~---~~-e~~~a~eeGI~~~~~~~p~~i~ 636 (1006)
T PRK12775 563 FLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPA--R---IE-EIRHAKEEGIDFFFLHSPVEIY 636 (1006)
T ss_pred cccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCC--C---HH-HHHHHHhCCCEEEecCCcEEEE
Confidence 012357999999999999999999998876 47888775432 121 1 11 1245678999999999999997
Q ss_pred eCCCCcEEEEEeC-----------------CCC--EEecCEEEEecCCC
Q 021871 277 AGSDGRVAAVKLE-----------------DGS--TIDADTVILLPYDQ 306 (306)
Q Consensus 277 ~~~~~~v~~v~~~-----------------~G~--~i~~d~vv~a~g~~ 306 (306)
.+++|++.+|++. .|+ ++++|.||+|+|+.
T Consensus 637 ~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 637 VDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred eCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 5567777666542 122 59999999999963
No 64
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.87 E-value=1.5e-20 Score=168.34 Aligned_cols=232 Identities=18% Similarity=0.189 Sum_probs=146.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHH--cCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVE--HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~--~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (306)
..+++|+|||||||||+||..|++ .|+ +|+|+|+.+.. .|++..... .+.+..+.+ ...+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~---~Vtv~E~~p~p--------gGlvr~gva--P~~~~~k~v-----~~~~ 85 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA---RVDIIERLPTP--------FGLVRSGVA--PDHPETKNV-----TNQF 85 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC---eEEEEecCCCC--------cceEeeccC--CCcchhHHH-----HHHH
Confidence 346799999999999999999997 566 99999998753 122211000 011111111 1234
Q ss_pred hhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHH-------HHH
Q 021871 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADA 199 (306)
Q Consensus 127 ~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~ 199 (306)
..++...+++++.+..+ +..+.+++.. ..||.||+|+|+.+...+.+|+.+.+++....++.. ...
T Consensus 86 ~~~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~ 158 (491)
T PLN02852 86 SRVATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVH 158 (491)
T ss_pred HHHHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhh
Confidence 45566678888776444 1223333322 479999999999875456678877888876544321 111
Q ss_pred HHHhhhcCCeEEEEcCCHHHHHHHHHHHhC--------------------C-CcEEEEecCCcccccccCHH--------
Q 021871 200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-LDTTIIFPENHLLQRLFTPS-------- 250 (306)
Q Consensus 200 ~~~~~~~~~~v~viG~g~~a~e~a~~l~~~--------------------~-~~v~~~~~~~~~~~~~~~~~-------- 250 (306)
+......+++++|||+|++|+|+|..|.+. + .+|++++|....-..+-..+
T Consensus 159 ~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~ 238 (491)
T PLN02852 159 LPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLK 238 (491)
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccC
Confidence 111223578999999999999999998764 3 46999999864221111111
Q ss_pred -----------------------------HHHHHHHHHHH---------cCCEEEcCceEEEEEeC--CCCcEEEEEeC-
Q 021871 251 -----------------------------LAQRYEQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE- 289 (306)
Q Consensus 251 -----------------------------~~~~~~~~~~~---------~gv~i~~~~~v~~i~~~--~~~~v~~v~~~- 289 (306)
..+.+.+...+ +++.+++....++|..+ +++++.++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~ 318 (491)
T PLN02852 239 NVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLER 318 (491)
T ss_pred CCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEE
Confidence 11222222222 57999998888888742 23577677663
Q ss_pred ----------------CCC--EEecCEEEEecCC
Q 021871 290 ----------------DGS--TIDADTVILLPYD 305 (306)
Q Consensus 290 ----------------~G~--~i~~d~vv~a~g~ 305 (306)
+|+ .+++|.||.|.|+
T Consensus 319 ~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~ 352 (491)
T PLN02852 319 TVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGY 352 (491)
T ss_pred eecCCCcccCCcccCCCCCEEEEECCEEEEeecC
Confidence 232 5899999999997
No 65
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=161.57 Aligned_cols=233 Identities=31% Similarity=0.407 Sum_probs=183.8
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhhc
Q 021871 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (306)
Q Consensus 54 vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (306)
++|||+|.+|+++|..|.+.. ++.+++++..+....|..+............ ..++ .....+..+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~ 66 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIAS-LEDL------------RYPPRFNRAT 66 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCC-HHHh------------cccchhHHhh
Confidence 589999999999999998876 4678988888877766655544322221111 1111 1111122467
Q ss_pred CeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEE
Q 021871 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (306)
Q Consensus 134 ~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~vi 213 (306)
++++..++.|.+++...+.+.+.++ .+.||++++|+|..+...+ +...++....+...+...+.......++++|+
T Consensus 67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv 142 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV 142 (415)
T ss_pred CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence 8999999999999999999999988 8999999999999988654 44577788887777777776655556899999
Q ss_pred cCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE--EEeCCC
Q 021871 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--VKLEDG 291 (306)
Q Consensus 214 G~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~--v~~~~G 291 (306)
|+|..++++|..+.+.|.+|+++...+++++..+.+.+.+.+.+.++++||++++++.+..|+.. .+.... +...++
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 221 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGK-GNTLVVERVVGIDG 221 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcc-cCcceeeEEEEeCC
Confidence 99999999999999999999999999999886322889999999999999999999999999963 333222 577888
Q ss_pred CEEecCEEEEecCC
Q 021871 292 STIDADTVILLPYD 305 (306)
Q Consensus 292 ~~i~~d~vv~a~g~ 305 (306)
..+++|.+++++|.
T Consensus 222 ~~~~~d~~~~~~g~ 235 (415)
T COG0446 222 EEIKADLVIIGPGE 235 (415)
T ss_pred cEEEeeEEEEeecc
Confidence 89999999999985
No 66
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.86 E-value=6.8e-21 Score=178.25 Aligned_cols=225 Identities=25% Similarity=0.317 Sum_probs=143.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||||++||++|+.|++.|+ +|+|+|+.+..+ |.+.. ..+...++. . .......
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~---~Vtv~e~~~~~G--------G~l~~-gip~~~~~~--~-----~~~~~~~ 251 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH---DVTIFDANEQAG--------GMMRY-GIPRFRLPE--S-----VIDADIA 251 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCC--------ceeee-cCCCCCCCH--H-----HHHHHHH
Confidence 345799999999999999999999998 999999886642 11110 000111110 0 0122345
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCC
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 208 (306)
.+.+.|+++++++.+ ..+ +.+++. ...||.|++|+|+.+...+.+|+.+.+++....++............++
T Consensus 252 ~l~~~Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk 324 (652)
T PRK12814 252 PLRAMGAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGK 324 (652)
T ss_pred HHHHcCCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCC
Confidence 567789998887643 211 111111 2359999999999865445667666666543221211111111234689
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE--E
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV--A 284 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v--~ 284 (306)
+|+|||+|++|+|+|..+.+.+. +|+++++... .++. .+ ..+.+. .+.||++++++.+.+|... ++.+ .
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa--~~---~ei~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~ 397 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA--NR---AEIEEA-LAEGVSLRELAAPVSIERS-EGGLELT 397 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH---HHHHHH-HHcCCcEEeccCcEEEEec-CCeEEEE
Confidence 99999999999999999998875 6999998764 3432 11 223333 4579999999999998753 3332 1
Q ss_pred EEEeC---------------CCC--EEecCEEEEecCCC
Q 021871 285 AVKLE---------------DGS--TIDADTVILLPYDQ 306 (306)
Q Consensus 285 ~v~~~---------------~G~--~i~~d~vv~a~g~~ 306 (306)
.+.+. +|+ .+++|.||+|+|+.
T Consensus 398 ~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 398 AIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred EEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 12111 232 58999999999973
No 67
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.86 E-value=1.1e-20 Score=171.20 Aligned_cols=231 Identities=24% Similarity=0.275 Sum_probs=146.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||||++||++|..|++.|+ +|+|+|+.+..+ |.+.. .+|.+... ........+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~---~V~vie~~~~~G--------G~l~~------gip~~~~~--~~~~~~~~~ 201 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH---KVTVFERADRIG--------GLLRY------GIPDFKLE--KEVIDRRIE 201 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCC--------ceeee------cCCcccCC--HHHHHHHHH
Confidence 345799999999999999999999998 999999986542 11110 01111000 000123345
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHH--HHHH----
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS---- 202 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~---- 202 (306)
++.+.++++++++.+. .+... +.....||.+++|+|+.....+.+++.+.+++.+..++.... .+..
T Consensus 202 ~~~~~gv~~~~~~~v~-~~~~~------~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~ 274 (471)
T PRK12810 202 LMEAEGIEFRTNVEVG-KDITA------EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETE 274 (471)
T ss_pred HHHhCCcEEEeCCEEC-CcCCH------HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhcccccc
Confidence 6778899998886542 11110 011257999999999984334556776667776542222111 1111
Q ss_pred --hhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcccccccC----HHHHH-HHHHHHHHcCCEEEcCceEEE
Q 021871 203 --SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFT----PSLAQ-RYEQLYQQNGVKFVKGASIKN 274 (306)
Q Consensus 203 --~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~gv~i~~~~~v~~ 274 (306)
....+++|+|||+|++|+|+|..+...+. +|++..+.+........ +.+.. ...+.+++.||++++++.+++
T Consensus 275 ~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~ 354 (471)
T PRK12810 275 PFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKE 354 (471)
T ss_pred ccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceE
Confidence 12357899999999999999998888764 78866554432221000 00111 134557788999999999999
Q ss_pred EEeCCCCcEEEEEeC-----CC---------CEEecCEEEEecCCC
Q 021871 275 LEAGSDGRVAAVKLE-----DG---------STIDADTVILLPYDQ 306 (306)
Q Consensus 275 i~~~~~~~v~~v~~~-----~G---------~~i~~d~vv~a~g~~ 306 (306)
|.. +++++.+|+.. +| .++++|.||+|+|++
T Consensus 355 i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~ 399 (471)
T PRK12810 355 FEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399 (471)
T ss_pred EEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcC
Confidence 984 56777665532 22 469999999999963
No 68
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.86 E-value=2.4e-20 Score=168.40 Aligned_cols=225 Identities=22% Similarity=0.272 Sum_probs=150.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
+.++|+|||||++||++|..|+++|+ +|+++|+.+..+ |++.. ..+...++ ........++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~---~V~i~e~~~~~g--------G~l~~-gip~~~~~-------~~~~~~~~~~ 200 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV---QVVVFDRHPEIG--------GLLTF-GIPSFKLD-------KAVLSRRREI 200 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCC--------ceeee-cCccccCC-------HHHHHHHHHH
Confidence 45799999999999999999999998 899999886532 11110 00011111 0111234566
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHH--HHHHH-----
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS----- 202 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~----- 202 (306)
+++.|++++.++.+.. .+.+++ ....||.|++|+|+.+...+++++.+.+++....++... ..+..
T Consensus 201 ~~~~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~ 273 (467)
T TIGR01318 201 FTAMGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESP 273 (467)
T ss_pred HHHCCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccc
Confidence 7889999998876521 111111 124799999999998765556777777887654322211 11100
Q ss_pred ----hhhcCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871 203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276 (306)
Q Consensus 203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 276 (306)
....+++++|+|+|.++++.|..+...+ .+|++++|.+.. ++. .+. ..+.+++.||++++++.++++.
T Consensus 274 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~--~~~----e~~~~~~~GV~~~~~~~~~~i~ 347 (467)
T TIGR01318 274 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG--SRR----EVANAREEGVEFLFNVQPVYIE 347 (467)
T ss_pred cccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC--CHH----HHHHHHhcCCEEEecCCcEEEE
Confidence 0124689999999999999999999988 479999987652 332 221 2244678899999999999997
Q ss_pred eCCCCcEEEEEeC---------C---------C--CEEecCEEEEecCCC
Q 021871 277 AGSDGRVAAVKLE---------D---------G--STIDADTVILLPYDQ 306 (306)
Q Consensus 277 ~~~~~~v~~v~~~---------~---------G--~~i~~d~vv~a~g~~ 306 (306)
.++++++.+|++. + | ..+++|.||+|+|++
T Consensus 348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCC
Confidence 5456666555441 1 2 269999999999963
No 69
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.7e-21 Score=148.56 Aligned_cols=236 Identities=19% Similarity=0.245 Sum_probs=166.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCccc-ccCCCCCcCChh
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE 128 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 128 (306)
.+.+|+|||+||++..+|.++++..+ +-+++|-.-. .....|...+......++|+|++ +.+.++...+..
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~~~-----~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGMMA-----NGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhccc---CceEEeeeec-----cCcCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence 34589999999999999999999988 7778774322 33333333344566778899985 446677777888
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHH--hh
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS--SL 204 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~ 204 (306)
..+++|.+++.. .|.+++.... .+.+ +.+.+.+|.+|+|||...+++. +|+. .++.++-+.+..|..+.. .+
T Consensus 79 qs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaapi 154 (322)
T KOG0404|consen 79 QSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAPI 154 (322)
T ss_pred HHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcchh
Confidence 888899998865 7888887654 4554 4557999999999999887643 3332 112122233334433332 34
Q ss_pred hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHH-HHHcCCEEEcCceEEEEEeCCCCcE
Q 021871 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL-YQQNGVKFVKGASIKNLEAGSDGRV 283 (306)
Q Consensus 205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~i~~~~~v~~i~~~~~~~v 283 (306)
..++..+|||+|.+++|-|.+|.+++.+|+++.|.+.+..+ ..++++ .+..+|++++++.+.+..- +.+.+
T Consensus 155 frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs-------~~Mq~ra~~npnI~v~~nt~~~ea~g-d~~~l 226 (322)
T KOG0404|consen 155 FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS-------KIMQQRAEKNPNIEVLYNTVAVEALG-DGKLL 226 (322)
T ss_pred hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH-------HHHHHHHhcCCCeEEEechhhhhhcc-Ccccc
Confidence 57889999999999999999999999999999999877653 233344 4556999999998887773 22332
Q ss_pred E-----EEEeCCCCEEecCEEEEecCC
Q 021871 284 A-----AVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 284 ~-----~v~~~~G~~i~~d~vv~a~g~ 305 (306)
. .+.+.+-..++++.++++.|.
T Consensus 227 ~~l~ikn~~tge~~dl~v~GlFf~IGH 253 (322)
T KOG0404|consen 227 NGLRIKNVKTGEETDLPVSGLFFAIGH 253 (322)
T ss_pred cceEEEecccCcccccccceeEEEecC
Confidence 2 233333346999999999885
No 70
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.86 E-value=5e-20 Score=173.04 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=148.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..++|+|||||++||++|..|++.|+ +|+|+|+.+..+ |.+.. ..+...++ .........+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~---~V~V~E~~~~~G--------G~l~~-gip~~~l~-------~~~~~~~~~~ 386 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV---AVTVYDRHPEIG--------GLLTF-GIPAFKLD-------KSLLARRREI 386 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC--------ceeee-cCCCccCC-------HHHHHHHHHH
Confidence 46799999999999999999999998 899999876532 22111 00111111 0011223456
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHH--HHHHHHH-----
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS----- 202 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~----- 202 (306)
+++.|++++.++.+.. + +.+.+. ...||.|++|+|+.....+.+++.+.+|+....++. .......
T Consensus 387 ~~~~Gv~~~~~~~v~~-~-----i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~ 459 (654)
T PRK12769 387 FSAMGIEFELNCEVGK-D-----ISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELP 459 (654)
T ss_pred HHHCCeEEECCCEeCC-c-----CCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCcccc
Confidence 7778999988876521 1 111111 247999999999876544566776677776432111 1111100
Q ss_pred ----hhhcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871 203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276 (306)
Q Consensus 203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 276 (306)
....+++|+|||+|++|+|+|..+.+.+. +|+++++.+.. ++. .+ ...+.+++.||++++++.++++.
T Consensus 460 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~--~~----~e~~~~~~~Gv~~~~~~~~~~i~ 533 (654)
T PRK12769 460 EEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG--SK----KEVKNAREEGANFEFNVQPVALE 533 (654)
T ss_pred ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC--CH----HHHHHHHHcCCeEEeccCcEEEE
Confidence 01246899999999999999998888875 79999887553 332 22 22345788999999999999997
Q ss_pred eCCCCcEEEEEeC---------CC---------C--EEecCEEEEecCCC
Q 021871 277 AGSDGRVAAVKLE---------DG---------S--TIDADTVILLPYDQ 306 (306)
Q Consensus 277 ~~~~~~v~~v~~~---------~G---------~--~i~~d~vv~a~g~~ 306 (306)
.++++++.+|++. +| + ++++|.||+|+|+.
T Consensus 534 ~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~ 583 (654)
T PRK12769 534 LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFN 583 (654)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCC
Confidence 5456777666541 22 2 59999999999963
No 71
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.86 E-value=1.9e-20 Score=178.74 Aligned_cols=218 Identities=22% Similarity=0.259 Sum_probs=134.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..++|+|||||||||+||++|+++|+ +|+|+|+.+..+ |.+... .+...++. +.......+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~---~VTV~Ek~~~lG--------G~l~~~-IP~~rlp~-------e~l~~~ie~ 596 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH---PVTVFEKKEKPG--------GVVKNI-IPEFRISA-------ESIQKDIEL 596 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---eEEEEecccccC--------ceeeec-ccccCCCH-------HHHHHHHHH
Confidence 45799999999999999999999998 999999986532 111100 00011110 001233355
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHH---hhhc
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEK 206 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~ 206 (306)
+.+.|++++++.... +.+++.....||+|++|+|+.+...+.+++.. +++. ..+.....+.. ....
T Consensus 597 l~~~GVe~~~g~~~d--------~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~ 665 (1012)
T TIGR03315 597 VKFHGVEFKYGCSPD--------LTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPL 665 (1012)
T ss_pred HHhcCcEEEEecccc--------eEhhhhhcccccEEEECCCCCCCCCCCcCCCC-ccee--eHHHHHHHhhcccccccc
Confidence 667889888763210 12222234579999999999865444444421 2222 11111111111 1245
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC-C-CcEEEEecCCc-ccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~-~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v 283 (306)
+++|+|||+|++|+|+|..+.+. + .+|++++|... .++. ..+.+.+.+ +.||+++.++.+..++ ++ .+
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-----~~eEl~~al-eeGVe~~~~~~p~~I~--~g-~l 736 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-----SREELEEAL-EDGVDFKELLSPESFE--DG-TL 736 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-----CHHHHHHHH-HcCCEEEeCCceEEEE--CC-eE
Confidence 89999999999999999998875 5 47999998763 3332 123343433 5799999988888876 22 21
Q ss_pred EEE--------------EeCCCC--EEecCEEEEecCCC
Q 021871 284 AAV--------------KLEDGS--TIDADTVILLPYDQ 306 (306)
Q Consensus 284 ~~v--------------~~~~G~--~i~~d~vv~a~g~~ 306 (306)
... ...+|+ ++++|.||+|+|+.
T Consensus 737 ~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 737 TCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred EEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 111 112243 68999999999974
No 72
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-20 Score=155.92 Aligned_cols=253 Identities=23% Similarity=0.387 Sum_probs=197.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCC--cCCh
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE--RQTP 127 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 127 (306)
+....+|||+|-+..+++....... ....|.+|..++...|.+|.+..-.|+..+.....-..|+-+.+.+.. ....
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~d-a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSND-ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCC-CCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 3567999999999888877776553 577999999999999999999888887666554443344433332211 1112
Q ss_pred hHH---------hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCC---CCCCEEEEccHH
Q 021871 128 EWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVA 195 (306)
Q Consensus 128 ~~~---------~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~---~~~g~~~~~~~~ 195 (306)
.++ ..-|+-+..+-+|..++...+.|+++||.+|.||.++||||..|..++.++.. -...+-+|+...
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~ 335 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA 335 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence 221 11357788898999999999999999999999999999999999887765432 134456777677
Q ss_pred HHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCce
Q 021871 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271 (306)
Q Consensus 196 ~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~ 271 (306)
+.+.+.+....-++|.|||+|..|-|+|..|.+. +.+|+-+......+...++..+..+-.+.+++.||.++.++.
T Consensus 336 DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~ 415 (659)
T KOG1346|consen 336 DFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAK 415 (659)
T ss_pred HHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchh
Confidence 7777777666678999999999999999999764 567888878777777778888888899999999999999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 272 IKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 272 v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
|.++.....+. .+++.||.++..|.||.|+|-
T Consensus 416 v~sv~~~~~nl--~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 416 VESVRKCCKNL--VLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred hhhhhhhccce--EEEecCCCeeeeeeEEEEecC
Confidence 99998643333 489999999999999999984
No 73
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.84 E-value=6.6e-20 Score=158.27 Aligned_cols=248 Identities=20% Similarity=0.214 Sum_probs=132.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc------cCCCCCCCCCC--CcccccC---
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL------FPLDKKPARLP--GFHTCVG--- 119 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~--- 119 (306)
.+|+++||.||++|+.|..|.+.+ ..+++++|+.+.+.|+...+..+.- .+.......-. .|.....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999987 2399999999988776543333221 11100000000 0100000
Q ss_pred -----------CCCCc----CChhHHhhcCeEEEeCCcEEEEeCCC------CEEEcC----CCcEEecCcEEEeeCCCC
Q 021871 120 -----------SGGER----QTPEWYKEKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTA 174 (306)
Q Consensus 120 -----------~~~~~----~~~~~~~~~~v~~~~~~~v~~v~~~~------~~v~~~----~g~~~~~~~lila~G~~~ 174 (306)
..... ++....++.+-.+.++.+|.+|.... ..|.+. ++..+.+++||+|+|..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 00001 11111222343367788999997643 356662 345899999999999887
Q ss_pred ccCCCCC-CCC-CCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCccccc-----
Q 021871 175 SRFPEKI-GGY-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR----- 245 (306)
Q Consensus 175 ~~~~~~~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~--~v~~~~~~~~~~~~----- 245 (306)
.. |... ... -+.+.+..++.... +.....++|+|||+|.+|.|++..|.+.+. +|+++.|++.+.+.
T Consensus 160 ~i-P~~~~~~~~~~~v~Hss~~~~~~---~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f 235 (341)
T PF13434_consen 160 RI-PEWFQDLPGSPRVFHSSEYLSRI---DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF 235 (341)
T ss_dssp ----GGGGGGTT-TTEEEGGGHHHHH---T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred CC-CcchhhcCCCCCEEEehHhhhcc---ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence 74 4332 222 25566544333221 114567899999999999999999998764 79999999876531
Q ss_pred ---cc-------------------------------CHHHHHHHHH-----HH-HHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871 246 ---LF-------------------------------TPSLAQRYEQ-----LY-QQNGVKFVKGASIKNLEAGSDGRVAA 285 (306)
Q Consensus 246 ---~~-------------------------------~~~~~~~~~~-----~~-~~~gv~i~~~~~v~~i~~~~~~~v~~ 285 (306)
.+ ++++.+.+.+ .+ .+..++++.+++|++++..+++.+ .
T Consensus 236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~ 314 (341)
T PF13434_consen 236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-R 314 (341)
T ss_dssp HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-E
T ss_pred hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-E
Confidence 12 2223322222 22 223578999999999998665554 4
Q ss_pred EEeCC---C--CEEecCEEEEecCC
Q 021871 286 VKLED---G--STIDADTVILLPYD 305 (306)
Q Consensus 286 v~~~~---G--~~i~~d~vv~a~g~ 305 (306)
+.+.+ | ..+++|.||+|||.
T Consensus 315 l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 315 LTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp EEEEETTT--EEEEEESEEEE---E
T ss_pred EEEEECCCCCeEEEecCEEEEcCCc
Confidence 55554 2 36899999999995
No 74
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.84 E-value=1e-20 Score=152.94 Aligned_cols=179 Identities=23% Similarity=0.328 Sum_probs=102.5
Q ss_pred EEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCC----CccccccccCCCCCCCCCCCc--c----------c
Q 021871 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER----PALTKGYLFPLDKKPARLPGF--H----------T 116 (306)
Q Consensus 55 vIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~--~----------~ 116 (306)
+|||||++||++|.+|.++|.+ +|+|+|+++..+ |.. ........+.......++..+ . .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 7999999999999999999982 399999987654 111 011000000000000011000 0 0
Q ss_pred ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCC--CCccCCCCCC-CCCCCEEEE
Q 021871 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHYI 191 (306)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~--~~~~~~~~~~-~~~~g~~~~ 191 (306)
....+...++..+.++++++++++++|.++..++ +.+.+.++..+++++||+|+|. .|. .|.+++ ... ...+.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h~ 156 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIHS 156 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEEG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEeh
Confidence 1112223466666777888899999999998754 5888888888999999999996 343 455555 222 22222
Q ss_pred ccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871 192 RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (306)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~ 242 (306)
.+..+ .....+++|+|||+|.+|+|++..|.+.+.+|+++.|++.+
T Consensus 157 ~~~~~-----~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 157 ADWRD-----PEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp GG-ST-----TGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred hhcCC-----hhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 11111 12335799999999999999999999999999999998754
No 75
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.83 E-value=3.1e-19 Score=167.05 Aligned_cols=225 Identities=20% Similarity=0.280 Sum_probs=148.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..++|+|||||++||++|+.|++.|+ +|+|+|+.+..+ |.+. ...+...++ ........++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~---~Vtv~e~~~~~G--------G~l~-~gip~~~l~-------~~~~~~~~~~ 369 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV---QVDVFDRHPEIG--------GMLT-FGIPPFKLD-------KTVLSQRREI 369 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC---cEEEEeCCCCCC--------Ceee-ccCCcccCC-------HHHHHHHHHH
Confidence 46899999999999999999999998 899999987542 1211 011111111 0001233466
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHH--HHHHH-----
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS----- 202 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~----- 202 (306)
+.+.|+++++++.+.. .+.+.+ ....||.+++|+|+.....+.+++.+.+|+....++... ..+..
T Consensus 370 ~~~~Gv~~~~~~~v~~------~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~ 442 (639)
T PRK12809 370 FTAMGIDFHLNCEIGR------DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESE 442 (639)
T ss_pred HHHCCeEEEcCCccCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCcccc
Confidence 7788999998876521 111111 134799999999998654456677667776643211111 11100
Q ss_pred ----hhhcCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871 203 ----SLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276 (306)
Q Consensus 203 ----~~~~~~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 276 (306)
....+++++|+|+|.++.+.|..+...+ .+|++++|.+.. ++. .+ ..+ ..+++.||++++++.+++|.
T Consensus 443 ~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~--~~---~e~-~~a~~eGv~~~~~~~~~~i~ 516 (639)
T PRK12809 443 EYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG--SR---KEV-VNAREEGVEFQFNVQPQYIA 516 (639)
T ss_pred ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH---HHH-HHHHHcCCeEEeccCCEEEE
Confidence 1124689999999999999999888877 579999987543 332 21 122 23578899999999999997
Q ss_pred eCCCCcEEEEEe---C------CC-----------CEEecCEEEEecCCC
Q 021871 277 AGSDGRVAAVKL---E------DG-----------STIDADTVILLPYDQ 306 (306)
Q Consensus 277 ~~~~~~v~~v~~---~------~G-----------~~i~~d~vv~a~g~~ 306 (306)
.+++|++.+|++ . +| .++++|.||+|+|++
T Consensus 517 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~ 566 (639)
T PRK12809 517 CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQ 566 (639)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCC
Confidence 545676665533 1 12 268999999999963
No 76
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.5e-19 Score=161.50 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=118.6
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCCccccccc--------cCCCCC--CCCCCCcc
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALTKGYL--------FPLDKK--PARLPGFH 115 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~--------~~~~~~--~~~~~~~~ 115 (306)
.+..+||+|||||++||++|++|.++|.+ +++|+||+...+ |.......-.+ ++.... ...++.+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~ 82 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA 82 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence 35578999999999999999999999984 299999997654 11111100000 000000 11122221
Q ss_pred cccCCCCCcCChhHHhhcCeE--EEeCCcEEEEeCCC----CEEEcCCCcE--EecCcEEEeeCCCCc-cCCCCCCCCCC
Q 021871 116 TCVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGCTAS-RFPEKIGGYLP 186 (306)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~v~~~~----~~v~~~~g~~--~~~~~lila~G~~~~-~~~~~~~~~~~ 186 (306)
....++..+++++++. +..++.|..++.+. ++|+++++.. +.+++||+|||.... ++|.++|
T Consensus 83 -----~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G---- 153 (443)
T COG2072 83 -----EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAG---- 153 (443)
T ss_pred -----cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCC----
Confidence 1235666777777643 45566666666533 3788887765 459999999996432 2354444
Q ss_pred CEEEEcc-HHHHHHHH-HhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc
Q 021871 187 GVHYIRD-VADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (306)
Q Consensus 187 g~~~~~~-~~~~~~~~-~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~ 243 (306)
...+.. ..++..+. .....+|+|+|||+|.||++++.+|.+.+.+|++++|++.+.
T Consensus 154 -~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 154 -LDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred -ccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 332211 11222222 233479999999999999999999999999999999998764
No 77
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.82 E-value=8.5e-19 Score=159.01 Aligned_cols=230 Identities=21% Similarity=0.273 Sum_probs=143.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..++|+|||||++|+++|..|++.|+ +|+|+|+.+..+ |.+.. ..+...++ ........++
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~---~V~v~e~~~~~g--------G~l~~-gip~~~~~-------~~~~~~~~~~ 202 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH---TVTVFEREDRCG--------GLLMY-GIPNMKLD-------KAIVDRRIDL 202 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCCC--------ceeec-cCCCccCC-------HHHHHHHHHH
Confidence 34799999999999999999999998 999999887532 11100 00000010 0011233466
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHH-HHHHH-------
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-ADALI------- 201 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~------- 201 (306)
+++.|++++.++.+. .+... +.....||.|++|+|+.....+++++.+.+++....++.. .....
T Consensus 203 ~~~~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (485)
T TIGR01317 203 LSAEGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKD 275 (485)
T ss_pred HHhCCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccc
Confidence 788899999887663 11110 1113579999999999833345677777778776532221 11111
Q ss_pred --HhhhcCCeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcccccccC----H---H---HHHHHHHHHHHcCCEE-E
Q 021871 202 --SSLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRLFT----P---S---LAQRYEQLYQQNGVKF-V 267 (306)
Q Consensus 202 --~~~~~~~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~~~~~~----~---~---~~~~~~~~~~~~gv~i-~ 267 (306)
.....+++|+|||+|++|+|.|..+...+ ..|+++.+.+........ + . ....+.+..+..|+++ +
T Consensus 276 ~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~ 355 (485)
T TIGR01317 276 IIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPRE 355 (485)
T ss_pred cccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceE
Confidence 11135789999999999999987777765 579999877654332110 1 1 1122334444456654 4
Q ss_pred cCceEEEEEeCCCCcEEEEEe--------CCCC-----------EEecCEEEEecCC
Q 021871 268 KGASIKNLEAGSDGRVAAVKL--------EDGS-----------TIDADTVILLPYD 305 (306)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~~--------~~G~-----------~i~~d~vv~a~g~ 305 (306)
+++.+.+|..++++++.+|++ ++|. ++++|.||+|+|+
T Consensus 356 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 356 YSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred EecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 577788887433466666653 1332 6999999999996
No 78
>PRK13984 putative oxidoreductase; Provisional
Probab=99.81 E-value=1.8e-18 Score=161.65 Aligned_cols=223 Identities=20% Similarity=0.252 Sum_probs=140.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||+|++|+++|..|+++|+ +|+|+|+.+..+ |.+.. ......++ .. .......
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~---~v~vie~~~~~g--------G~~~~-~i~~~~~~--~~-----~~~~~~~ 341 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGY---EVTVYESLSKPG--------GVMRY-GIPSYRLP--DE-----ALDKDIA 341 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC--------ceEee-cCCcccCC--HH-----HHHHHHH
Confidence 346799999999999999999999998 999999887542 11100 00000111 00 0122345
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh----
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---- 204 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---- 204 (306)
++++.+++++.++.|.. + +..++ ....||+||+|+|+...+.+++++.+.+++.... .....+.+.+
T Consensus 342 ~~~~~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~--~~l~~~~~~~~~~~ 412 (604)
T PRK13984 342 FIEALGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL--PLLREIRDYLRGEG 412 (604)
T ss_pred HHHHCCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHH--HHHHHHHhhhccCC
Confidence 67788999988876631 1 11111 1357999999999875444566666556655421 1111111111
Q ss_pred ---hcCCeEEEEcCCHHHHHHHHHHHhCC------CcEEEEecC--CcccccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871 205 ---EKAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (306)
Q Consensus 205 ---~~~~~v~viG~g~~a~e~a~~l~~~~------~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~ 273 (306)
..+++|+|||+|.+|+|+|..+.+.+ .+|+++... ...++. .. ..+.+ +.+.||++++++.+.
T Consensus 413 ~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~--~~---~e~~~-~~~~GV~i~~~~~~~ 486 (604)
T PRK13984 413 PKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA--DM---EEIEE-GLEEGVVIYPGWGPM 486 (604)
T ss_pred CcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC--CH---HHHHH-HHHcCCEEEeCCCCE
Confidence 13689999999999999999998764 267776432 122221 11 22333 346899999999998
Q ss_pred EEEeCCCCcEEEEEeC--------CC-----------CEEecCEEEEecCCC
Q 021871 274 NLEAGSDGRVAAVKLE--------DG-----------STIDADTVILLPYDQ 306 (306)
Q Consensus 274 ~i~~~~~~~v~~v~~~--------~G-----------~~i~~d~vv~a~g~~ 306 (306)
++.. +++++.+|++. +| .++++|.||+|+|+.
T Consensus 487 ~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 487 EVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred EEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 8874 56666565542 12 369999999999974
No 79
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=7.6e-19 Score=155.04 Aligned_cols=231 Identities=17% Similarity=0.228 Sum_probs=141.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC--CCCC--------ccccccc---------cCCCCCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP--------ALTKGYL---------FPLDKKPA 109 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~~~~---------~~~~~~~~ 109 (306)
+.+++|+|||||+|||++|+.|.+.|+ +++++|+.+.++ |... .+..... ++....+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE 80 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence 457899999999999999999999999 999999998875 2222 1111111 11111111
Q ss_pred CCCCc-ccccCCCCCcCChhHHhhcCe--EEEeCCcEEEEeCCC---CEEEcCCC----cEEecCcEEEeeCCCC-ccCC
Q 021871 110 RLPGF-HTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFP 178 (306)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~v~~~~---~~v~~~~g----~~~~~~~lila~G~~~-~~~~ 178 (306)
+.+.+ +. ..+...++..+++++++ .+.++++|..++... +.+...+. ...-||.|++|+|... ..+|
T Consensus 81 ~~~~~~p~--~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P 158 (448)
T KOG1399|consen 81 RDPRYFPS--HREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIP 158 (448)
T ss_pred cCcccCCC--HHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCC
Confidence 11111 00 01223466666777775 477888888887653 46655443 3788999999999883 2245
Q ss_pred CCCCC---CCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHH
Q 021871 179 EKIGG---YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (306)
Q Consensus 179 ~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
.+++. .++| +.++..+.-......+++|+|||.|+||.|++.+++..++.+++..+ ...... ..
T Consensus 159 ~~~g~~~~~f~G----~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~------- 225 (448)
T KOG1399|consen 159 QIPGPGIESFKG----KIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EP------- 225 (448)
T ss_pred cCCCCchhhcCC----cceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-cc-------
Confidence 44432 2333 12333333334455789999999999999999999999888888754 100000 00
Q ss_pred HHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 256 ~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.. .-..++..+.. |..+. +++. +-..++....+|.+|+|||.
T Consensus 226 ~~-~~~~~~~~~~~--i~~~~--e~~~---~~~~~~~~~~~D~ii~ctgy 267 (448)
T KOG1399|consen 226 PE-ILGENLWQVPS--IKSFT--EDGS---VFEKGGPVERVDRIIFCTGY 267 (448)
T ss_pred cc-eeecceEEccc--ccccc--Ccce---EEEcCceeEEeeeEEEeeee
Confidence 00 01123333322 66666 3432 44556667889999999984
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.80 E-value=3.5e-18 Score=160.80 Aligned_cols=234 Identities=14% Similarity=0.114 Sum_probs=134.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC--C-----------------CCcc-ccccccCCCCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--E-----------------RPAL-TKGYLFPLDKKP 108 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~--~-----------------~~~~-~~~~~~~~~~~~ 108 (306)
...++|+|||||||||+||++|+++|+ +|+++|+.+..+. . +... .+|.. ...-+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~-~yGIp- 455 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVA-EYGIT- 455 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccccCCccc-ccCcc-
Confidence 456899999999999999999999999 9999998643211 1 0000 11111 10000
Q ss_pred CCCCCcccccCCCCCcCChhHHhhcC--eEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCC-CccCCCCCCCCC
Q 021871 109 ARLPGFHTCVGSGGERQTPEWYKEKG--IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYL 185 (306)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~-~~~~~~~~~~~~ 185 (306)
.+++.- .........+.+ +.++.+..+ .. .+..++-....||.|++|+|+. ++ .+.+|+.+.
T Consensus 456 ~R~~k~--------~l~~i~~il~~g~~v~~~~gv~l---G~---dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda 520 (1028)
T PRK06567 456 VRWDKN--------NLDILRLILERNNNFKYYDGVAL---DF---NITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEA 520 (1028)
T ss_pred ccchHH--------HHHHHHHHHhcCCceEEECCeEE---Cc---cCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccC
Confidence 111100 000011112223 444444331 11 1111111235799999999994 55 456777666
Q ss_pred CCEEEEccHHHHHHHHHh--------hhcCCeEEEEcCCHHHHHHHHHHHh-----------------------------
Q 021871 186 PGVHYIRDVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG----------------------------- 228 (306)
Q Consensus 186 ~g~~~~~~~~~~~~~~~~--------~~~~~~v~viG~g~~a~e~a~~l~~----------------------------- 228 (306)
+++....++......... ...+++|+|||+|++|+|.|.....
T Consensus 521 ~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f 600 (1028)
T PRK06567 521 KGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEF 600 (1028)
T ss_pred CCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHH
Confidence 676654332221111000 1135789999999999999984332
Q ss_pred ----------------------CCCcEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871 229 ----------------------WKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (306)
Q Consensus 229 ----------------------~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~ 285 (306)
.+ .|++++|...- +|. ..-..+.+.+ ..+.||+++......+|..+++|.+.+
T Consensus 601 ~~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA--~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~ 676 (1028)
T PRK06567 601 IAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPA--YKLNHEELIY-ALALGVDFKENMQPLRINVDKYGHVES 676 (1028)
T ss_pred HHHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCC--CCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEE
Confidence 12 28888887532 111 1001233333 466899999999999987655677766
Q ss_pred EEeC--------------C-C---------------CEEecCEEEEecCCC
Q 021871 286 VKLE--------------D-G---------------STIDADTVILLPYDQ 306 (306)
Q Consensus 286 v~~~--------------~-G---------------~~i~~d~vv~a~g~~ 306 (306)
+++. + + .+++||.||.|+|++
T Consensus 677 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 677 VEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred EEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 5543 1 1 268999999999974
No 81
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.78 E-value=6.9e-18 Score=156.29 Aligned_cols=224 Identities=22% Similarity=0.253 Sum_probs=140.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||+|++||++|+.|+++|+ +|+|+|+.+..+ |++. ..-+...++. +......+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~---~V~v~e~~~~~G--------G~l~-~gip~~~~~~-------~~~~~~l~ 195 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH---AVTIFEAGPKLG--------GMMR-YGIPAYRLPR-------EVLDAEIQ 195 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC--------Ceee-ecCCCccCCH-------HHHHHHHH
Confidence 345799999999999999999999998 899999987642 1111 0001111110 00122234
Q ss_pred HHhhcCeEEEeCCcE-EEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcC
Q 021871 129 WYKEKGIEMIYQDPV-TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 207 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v-~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 207 (306)
.+.+.|+++..+..+ ..+..+. + ...||.+++|+|+.......+++....++...-++............+
T Consensus 196 ~~~~~Gv~~~~~~~~~~~~~~~~----~----~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~g 267 (564)
T PRK12771 196 RILDLGVEVRLGVRVGEDITLEQ----L----EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLG 267 (564)
T ss_pred HHHHCCCEEEeCCEECCcCCHHH----H----HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCC
Confidence 566788988877554 2211110 0 135899999999876544455554455544332221111101112347
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcc-cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~ 285 (306)
++++|+|+|.++++.+..+.+.+ .+++++.+.+.. ++. . ...+ +.+.+.||++++++.+.++..++++.+ +
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~--~---~~~~-~~a~~~GVki~~~~~~~~i~~~~~~~~-~ 340 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA--H---DEEI-EEALREGVEINWLRTPVEIEGDENGAT-G 340 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC--C---HHHH-HHHHHcCCEEEecCCcEEEEcCCCCEE-E
Confidence 89999999999999999888887 678888887542 221 1 1222 234568999999999999986444443 3
Q ss_pred EE-----e----CC-------C--CEEecCEEEEecCCC
Q 021871 286 VK-----L----ED-------G--STIDADTVILLPYDQ 306 (306)
Q Consensus 286 v~-----~----~~-------G--~~i~~d~vv~a~g~~ 306 (306)
++ . .+ | .++++|.||+|+|+.
T Consensus 341 v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 341 LRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred EEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 32 1 22 2 369999999999973
No 82
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.6e-18 Score=139.79 Aligned_cols=135 Identities=27% Similarity=0.446 Sum_probs=109.6
Q ss_pred cEEecCcEEEeeCCCCccCCCCCCCCCCCE-EEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe
Q 021871 159 KLLKYGSLIVATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237 (306)
Q Consensus 159 ~~~~~~~lila~G~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~ 237 (306)
+.+.++.+++|+|.+|++ |. +||. ++. ..++++++.-..+.+.+|+|+|+.++|.|.+|+..+.+++++.
T Consensus 158 ~~~ta~~fvIatG~RPrY-p~-----IpG~~Ey~---ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmV 228 (503)
T KOG4716|consen 158 RFLTAENFVIATGLRPRY-PD-----IPGAKEYG---ITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMV 228 (503)
T ss_pred EEeecceEEEEecCCCCC-CC-----CCCceeee---ecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEE
Confidence 378999999999999996 44 6763 333 3567777777778889999999999999999999999999999
Q ss_pred cCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCC--CEEecCEEEEecCC
Q 021871 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDG--STIDADTVILLPYD 305 (306)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G--~~i~~d~vv~a~g~ 305 (306)
|+.-+.. ++.++.+.+.+.++++|+++...+....|+.-++++. .|.. ..+ .+-++|.|+||.|.
T Consensus 229 RSI~LrG--FDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 229 RSILLRG--FDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred EEeeccc--ccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhcc
Confidence 9865554 8999999999999999999999988888887666653 2322 222 25679999999986
No 83
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.1e-18 Score=140.04 Aligned_cols=227 Identities=19% Similarity=0.248 Sum_probs=149.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...+||+||||||+|-+||.+.+++|+. .=++-|+= +|.... .....++-+.++--+.++...+.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiR--TGl~aerf-----------GGQvld-T~~IENfIsv~~teGpkl~~ale~ 274 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIR--TGLVAERF-----------GGQVLD-TMGIENFISVPETEGPKLAAALEA 274 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcch--hhhhhhhh-----------CCeecc-ccchhheeccccccchHHHHHHHH
Confidence 4579999999999999999999999983 11222221 111100 001111112222222333456677
Q ss_pred HHhhcCeEEEeCCcEEEEeCC-----CCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCC---CCCEEEEccHHHHHHH
Q 021871 129 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL 200 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~-----~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~ 200 (306)
..+++.+++.-..+..++.+. ...+.+.+|-.+.++.+|++||.+=+. -.+||.+ -+|+-|+. +|
T Consensus 275 Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn-~nvPGE~e~rnKGVayCP---HC--- 347 (520)
T COG3634 275 HVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRN-MNVPGEDEYRNKGVAYCP---HC--- 347 (520)
T ss_pred HHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhc-CCCCchHHHhhCCeeeCC---CC---
Confidence 778888887544455555552 226888999999999999999987543 2344432 45666654 33
Q ss_pred HHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCC
Q 021871 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS 279 (306)
Q Consensus 201 ~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~ 279 (306)
...+.++++|+|||+|++|+|.|-.|+..-.+||++.-.+.+.. ...++++++. .+|+|+++..-++|.- +
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA-------D~VLq~kl~sl~Nv~ii~na~Ttei~G-d 419 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA-------DAVLQDKLRSLPNVTIITNAQTTEVKG-D 419 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh-------HHHHHHHHhcCCCcEEEecceeeEEec-C
Confidence 23567899999999999999999999999999999976554433 2345555543 5999999999999993 4
Q ss_pred CCcEEEEEeCC---CC--EEecCEEEEecC
Q 021871 280 DGRVAAVKLED---GS--TIDADTVILLPY 304 (306)
Q Consensus 280 ~~~v~~v~~~~---G~--~i~~d~vv~a~g 304 (306)
+.+|.++...+ |+ .++-+.|++-.|
T Consensus 420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG 449 (520)
T COG3634 420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIG 449 (520)
T ss_pred CceecceEEEeccCCceeEEEeeeeEEEEe
Confidence 56777776644 33 355566665544
No 84
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=3.2e-15 Score=126.58 Aligned_cols=250 Identities=18% Similarity=0.202 Sum_probs=153.8
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC---------CCCCCCCCCCccccc
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP---------LDKKPARLPGFHTCV 118 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 118 (306)
+++.+|++.||-||+-|+.|..|.+.+. .++..+|+.+.+.|+...+..+.-.. ...+...+ .|....
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~y-SFLNYL 78 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPY-SFLNYL 78 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCch-HHHHHH
Confidence 4567899999999999999999998863 38999999999888755444433211 00000000 000000
Q ss_pred -----------------CCCCCcCChhHHhhcCeEEEeCCcEEEE---eCCCC---EEEcCCCcEEecCcEEEeeCCCCc
Q 021871 119 -----------------GSGGERQTPEWYKEKGIEMIYQDPVTSI---DIEKQ---TLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 119 -----------------~~~~~~~~~~~~~~~~v~~~~~~~v~~v---~~~~~---~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
...-+..+.+|..+.--.++++.+|.+| +.+.. .+.+.++..++++.||+.+|.+|.
T Consensus 79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY 158 (436)
T ss_pred HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence 0000111222222222346778888844 44332 256677779999999999999998
Q ss_pred cCCCCCCCCCCCEEEEccHHHHHHHHHh--hhcCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEecCCcccccc---
Q 021871 176 RFPEKIGGYLPGVHYIRDVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRL--- 246 (306)
Q Consensus 176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~v~viG~g~~a~e~a~~l~~~----~~~v~~~~~~~~~~~~~--- 246 (306)
.+|.+....-+.+++ .++.+... +...++|+|||+|.+|.|+-..|... ..++.++.|+..+.|.-
T Consensus 159 IP~~f~~l~~~~vfH-----ss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Sk 233 (436)
T COG3486 159 IPPCFRSLIGERVFH-----SSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSK 233 (436)
T ss_pred CChHHhCcCccceee-----hHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccch
Confidence 655433321223333 33333222 22334599999999999999988754 23578899988765420
Q ss_pred -----------------------------------cCHHHHHH-----HHHHHH--HcCCEEEcCceEEEEEeCCCCcEE
Q 021871 247 -----------------------------------FTPSLAQR-----YEQLYQ--QNGVKFVKGASIKNLEAGSDGRVA 284 (306)
Q Consensus 247 -----------------------------------~~~~~~~~-----~~~~~~--~~gv~i~~~~~v~~i~~~~~~~v~ 284 (306)
.+.+.... +++.+. +..+.+..+++|++++..++|++
T Consensus 234 f~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~- 312 (436)
T COG3486 234 FGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY- 312 (436)
T ss_pred hhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-
Confidence 11112222 222222 33689999999999998777753
Q ss_pred EEEeCCC-----CEEecCEEEEecCCC
Q 021871 285 AVKLEDG-----STIDADTVILLPYDQ 306 (306)
Q Consensus 285 ~v~~~~G-----~~i~~d~vv~a~g~~ 306 (306)
.+.+... +++++|.||+|||..
T Consensus 313 ~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 313 RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred EEEEeeccCCCceEEEeeEEEEecccc
Confidence 4554332 478999999999963
No 85
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.65 E-value=6.4e-16 Score=137.27 Aligned_cols=230 Identities=24% Similarity=0.256 Sum_probs=148.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
..++|+||||||+||++|..|.+.|+ +|+++|+.+..+ |.+.. ..+.+.++ ++........
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~---~Vtv~e~~~~~G--------Gll~y-GIP~~kl~-------k~i~d~~i~~ 182 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGH---DVTVFERVALDG--------GLLLY-GIPDFKLP-------KDILDRRLEL 182 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCC---eEEEeCCcCCCc--------eeEEe-cCchhhcc-------chHHHHHHHH
Confidence 34799999999999999999999999 999999876642 12110 11111111 1123456677
Q ss_pred HhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhh-----
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL----- 204 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----- 204 (306)
+++.|++|+.++++- . .++++.- .-+||.+++|+|....+.-.+++.+.+++...-++..........
T Consensus 183 l~~~Gv~~~~~~~vG---~---~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~ 255 (457)
T COG0493 183 LERSGVEFKLNVRVG---R---DITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAED 255 (457)
T ss_pred HHHcCeEEEEcceEC---C---cCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccc
Confidence 888999999887652 1 1111111 236699999999886555667777777776543332222211111
Q ss_pred ----hcCCeEEEEcCCHHHHHHHHHHHhCCC-cEEEEecCCccccc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871 205 ----EKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (306)
Q Consensus 205 ----~~~~~v~viG~g~~a~e~a~~l~~~~~-~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 278 (306)
..+++++|||+|.+++|++......+. .++.+++...--.. ..+..-.....+...++|++......-..+..+
T Consensus 256 ~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~ 335 (457)
T COG0493 256 RTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGN 335 (457)
T ss_pred cCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeec
Confidence 123899999999999999998888876 67777532221000 011112344556678889988888888888876
Q ss_pred CCCcEEEEEeCC-------------------CC--EEecCEEEEecCC
Q 021871 279 SDGRVAAVKLED-------------------GS--TIDADTVILLPYD 305 (306)
Q Consensus 279 ~~~~v~~v~~~~-------------------G~--~i~~d~vv~a~g~ 305 (306)
++|+|.++.+.. |+ ++++|.|+.|+|+
T Consensus 336 e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~ 383 (457)
T COG0493 336 EGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGF 383 (457)
T ss_pred CCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhcc
Confidence 788776554321 22 5778888888774
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.58 E-value=8e-14 Score=123.45 Aligned_cols=153 Identities=15% Similarity=0.223 Sum_probs=85.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHH-HcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 50 ENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~-~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
..++|+|||||||||++|.+|. +.|+ +|+|+|+.+..+ |.+..... + +-+.++.+ ...+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pg--------GLvR~GVa-P-dh~~~k~v-----~~~f~~ 99 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPY--------GLIRYGVA-P-DHIHVKNT-----YKTFDP 99 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCc--------cEEEEeCC-C-CCccHHHH-----HHHHHH
Confidence 4578999999999999999876 5677 999999987742 22211111 0 11111111 122233
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCC--------C-CCC----CCCEEEEc---
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK--------I-GGY----LPGVHYIR--- 192 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~--------~-~~~----~~g~~~~~--- 192 (306)
.+...++++..+.++. . .+..++- ...||.||+|+|+.+..+|-+ . +.+ ++|.+...
T Consensus 100 ~~~~~~v~f~gnv~VG---~---Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV 172 (506)
T PTZ00188 100 VFLSPNYRFFGNVHVG---V---DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLI 172 (506)
T ss_pred HHhhCCeEEEeeeEec---C---ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEE
Confidence 3444667766443331 1 1111111 238999999999986543310 0 222 44554222
Q ss_pred ----cHHHH---HHHHHh---hhcCCeEEEEcCCHHHHHHHHHHH
Q 021871 193 ----DVADA---DALISS---LEKAKKVVVVGGGYIGMEVAAAAV 227 (306)
Q Consensus 193 ----~~~~~---~~~~~~---~~~~~~v~viG~g~~a~e~a~~l~ 227 (306)
...+. ..+... +...++++|||+|++|+|+|..|.
T Consensus 173 ~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~ 217 (506)
T PTZ00188 173 YFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILI 217 (506)
T ss_pred EeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHc
Confidence 11111 011111 124578999999999999999764
No 87
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.51 E-value=8.8e-14 Score=116.55 Aligned_cols=154 Identities=21% Similarity=0.283 Sum_probs=100.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+|.|||+||||+++|..|.++ +++.+|.|+|+.+..+ . +......+.+ |..+.+ ...+...+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~PvPF-G---LvRyGVAPDH------pEvKnv-----intFt~~a 83 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPVPF-G---LVRYGVAPDH------PEVKNV-----INTFTKTA 83 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCccc-c---eeeeccCCCC------cchhhH-----HHHHHHHh
Confidence 35999999999999999999997 4567999999997742 1 1110112222 222222 24556666
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEcc-------HHHHHHHHHh
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD-------VADADALISS 203 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~ 203 (306)
++....+..|.+|- ..+.+.+- .-.||.++||.|+...+-..+||.+.+++...+. ....+.+.-.
T Consensus 84 E~~rfsf~gNv~vG------~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~d 156 (468)
T KOG1800|consen 84 EHERFSFFGNVKVG------RDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPD 156 (468)
T ss_pred hccceEEEecceec------ccccHHHH-hhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcc
Confidence 66667777665541 11111111 3489999999999877667788888888765432 2222222222
Q ss_pred hhcCCeEEEEcCCHHHHHHHHHHHh
Q 021871 204 LEKAKKVVVVGGGYIGMEVAAAAVG 228 (306)
Q Consensus 204 ~~~~~~v~viG~g~~a~e~a~~l~~ 228 (306)
+ .+.+++|||.|+.++|+|..|..
T Consensus 157 l-s~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 157 L-SGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred c-ccceEEEEccCchhhhhhhhhhC
Confidence 2 37789999999999999998753
No 88
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.50 E-value=4.7e-13 Score=90.96 Aligned_cols=80 Identities=39% Similarity=0.656 Sum_probs=74.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~ 288 (306)
+++|||+|.+|+|+|..+++.+.+|+++.+.+.+++ .+++.+...+.+.++++||++++++.+.+++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 589999999999999999999999999999999995 489999999999999999999999999999986666 65 888
Q ss_pred CCC
Q 021871 289 EDG 291 (306)
Q Consensus 289 ~~G 291 (306)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
No 89
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.46 E-value=4e-13 Score=107.20 Aligned_cols=172 Identities=23% Similarity=0.347 Sum_probs=123.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (306)
+.+|||||+||.+||-.|+..- ++.+|+++...+..--. .+ +..+.+++++
T Consensus 1 kfivvgggiagvscaeqla~~~-psa~illitass~vksv----------------tn------------~~~i~~ylek 51 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSV----------------TN------------YQKIGQYLEK 51 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHH----------------hh------------HHHHHHHHHh
Confidence 3689999999999999999985 67899999876543100 00 0122222232
Q ss_pred cCeE----------EE--eCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHH
Q 021871 133 KGIE----------MI--YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200 (306)
Q Consensus 133 ~~v~----------~~--~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 200 (306)
++++ +. .+ .|..++..+..+.+.+|..+.|++|++|+|.+|...- ++ --+.+...++-.+.+.+
T Consensus 52 fdv~eq~~~elg~~f~~~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQll 127 (334)
T KOG2755|consen 52 FDVKEQNCHELGPDFRRFLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLL 127 (334)
T ss_pred cCccccchhhhcccHHHHHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHH
Confidence 2221 11 12 2445566677899999999999999999999987432 22 12344555666777777
Q ss_pred HHhhhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHH
Q 021871 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259 (306)
Q Consensus 201 ~~~~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
...+.+.|.|+|+|.|-++.|++.++.. .+|++....+.+...+++|...+.+...+
T Consensus 128 q~kl~kaK~VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l 184 (334)
T KOG2755|consen 128 QCKLVKAKIVLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINL 184 (334)
T ss_pred HHHHhhcceEEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhh
Confidence 7788889999999999999999999875 46899989888888888888777776665
No 90
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.45 E-value=2.4e-12 Score=112.78 Aligned_cols=203 Identities=19% Similarity=0.214 Sum_probs=114.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
++++||+|||||+.|+++|+.|.+.. ++.+|.|+||.+....+....+.|.+......... .++.-+.........+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~-p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~--slka~l~~~g~~~~~~ 77 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYE-PDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPG--SLKAKLCVAGNINEFA 77 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhC-CCceEEEEEccCccccccccCcccceeccccCCCc--chhhHHHHHHHHHHHH
Confidence 35689999999999999999999997 45599999999988776666555444332111100 1110000011111233
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCcc-CCCC----CCCCCCCEEEEccHHHHHHHHHh
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-FPEK----IGGYLPGVHYIRDVADADALISS 203 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~-~~~~----~~~~~~g~~~~~~~~~~~~~~~~ 203 (306)
+++++++.+ ....++++|+|..... +... ....++.+. ..+.+.+.+.
T Consensus 78 ~~kq~~~~f-----------------------~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~----~ld~~~i~~~ 130 (429)
T COG0579 78 ICKQLGIPF-----------------------INCGKLSVATGEEEVERLEKLYERGKANGVFDLE----ILDKEEIKEL 130 (429)
T ss_pred HHHHhCCcc-----------------------cccCeEEEEEChHHHHHHHHHHHHHhhCCCccee----ecCHHHHHhh
Confidence 344444222 2447788888854321 0000 000011111 1122222221
Q ss_pred hhcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcE
Q 021871 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283 (306)
Q Consensus 204 ~~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v 283 (306)
.. .+.+-..-- +........ ....+...+.+.++.+|++++++++|+.|+..++| +
T Consensus 131 eP-------------------~l~~~~~aa-l~~p~~giV---~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~ 186 (429)
T COG0579 131 EP-------------------LLNEGAVAA-LLVPSGGIV---DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-V 186 (429)
T ss_pred Cc-------------------cccccceee-EEcCCCceE---cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-e
Confidence 11 111000000 111222111 14456777888888899999999999999986665 4
Q ss_pred EEEEeCCCCE-EecCEEEEecCC
Q 021871 284 AAVKLEDGST-IDADTVILLPYD 305 (306)
Q Consensus 284 ~~v~~~~G~~-i~~d~vv~a~g~ 305 (306)
..+.+.+|++ ++|+.||.|.|.
T Consensus 187 ~~~~~~~g~~~~~ak~Vin~AGl 209 (429)
T COG0579 187 FVLNTSNGEETLEAKFVINAAGL 209 (429)
T ss_pred EEEEecCCcEEEEeeEEEECCch
Confidence 4688888876 999999999985
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.43 E-value=4.9e-15 Score=119.50 Aligned_cols=147 Identities=31% Similarity=0.497 Sum_probs=94.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCc--CChhHH
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER--QTPEWY 130 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 130 (306)
||+|||||+||++||.+|++.+. +++++|+.+...+.........+...... ..... . .. .+.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~--~~~~~~~~~~ 68 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPH------RHEFL-P--ARLFKLVDQL 68 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHH------HHHHH-H--HHHGHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC---eEEEEeccccccccccccccccccccccc------ccccc-c--cccccccccc
Confidence 79999999999999999999888 99999887653322111111000000000 00000 0 00 223334
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEE----------EcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHH
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v----------~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 200 (306)
...+++++.+.++.+++.....+ ...++..+.||+||+|+|..+.. |.+++. +.....+.+.+++.+
T Consensus 69 ~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~ 145 (201)
T PF07992_consen 69 KNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRF 145 (201)
T ss_dssp HHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHH
T ss_pred ccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccc
Confidence 66889998888999999876632 23345689999999999988774 344432 112223456678888
Q ss_pred HHhhhcCCeEEEEc
Q 021871 201 ISSLEKAKKVVVVG 214 (306)
Q Consensus 201 ~~~~~~~~~v~viG 214 (306)
.+....+++++|+|
T Consensus 146 ~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 146 LELLESPKRVAVVG 159 (201)
T ss_dssp HTHSSTTSEEEEES
T ss_pred cccccccccccccc
Confidence 87777777999999
No 92
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.42 E-value=6.3e-13 Score=124.22 Aligned_cols=156 Identities=22% Similarity=0.360 Sum_probs=101.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
...++|+|||+||+||+||-.|.+.|+ .|+|+|+.+..+ |.+. ..-+..++.-+ ..+...+
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh---~v~vyer~dr~g--------gll~-ygipnmkldk~-------vv~rrv~ 1843 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGH---TVTVYERSDRVG--------GLLM-YGIPNMKLDKF-------VVQRRVD 1843 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCc---EEEEEEecCCcC--------ceee-ecCCccchhHH-------HHHHHHH
Confidence 446899999999999999999999999 999999987752 2211 01111111100 0123445
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHH--HHHHH-hh-
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS-SL- 204 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~-~~- 204 (306)
.+.+.|++|..|+++-.- +.+ |+-.-+.|.+|+|+|+...+-.++|+.+.+|+.+.-++.+. ..+.+ .+
T Consensus 1844 ll~~egi~f~tn~eigk~------vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d 1916 (2142)
T KOG0399|consen 1844 LLEQEGIRFVTNTEIGKH------VSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLD 1916 (2142)
T ss_pred HHHhhCceEEeecccccc------ccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccc
Confidence 577789999988776321 222 22234789999999987544455788888888765332221 11111 11
Q ss_pred -----hcCCeEEEEcCCHHHHHHHHHHHhCC
Q 021871 205 -----EKAKKVVVVGGGYIGMEVAAAAVGWK 230 (306)
Q Consensus 205 -----~~~~~v~viG~g~~a~e~a~~l~~~~ 230 (306)
.++++|+|||+|.+|-+....-.+.|
T Consensus 1917 ~~~~~~~gkkvivigggdtg~dcigtsvrhg 1947 (2142)
T KOG0399|consen 1917 GNYISAKGKKVIVIGGGDTGTDCIGTSVRHG 1947 (2142)
T ss_pred cceeccCCCeEEEECCCCccccccccchhhc
Confidence 25789999999999998877766665
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.42 E-value=6.5e-12 Score=106.96 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=57.5
Q ss_pred HHHhCCCcEEEEecCCccccc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871 225 AAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP 303 (306)
Q Consensus 225 ~l~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~ 303 (306)
.....+...+.- .+.++.|. .-...+.+.+.+++++.||++++++.|.+++..+.+. .+.+.+|+++.||.+|+||
T Consensus 87 ~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f--~l~t~~g~~i~~d~lilAt 163 (408)
T COG2081 87 WVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF--RLDTSSGETVKCDSLILAT 163 (408)
T ss_pred HHHhcCCeeEEc-cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE--EEEcCCCCEEEccEEEEec
Confidence 333344333333 33344443 3466889999999999999999999999999643233 6999999899999999999
Q ss_pred CC
Q 021871 304 YD 305 (306)
Q Consensus 304 g~ 305 (306)
|-
T Consensus 164 GG 165 (408)
T COG2081 164 GG 165 (408)
T ss_pred CC
Confidence 94
No 94
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.37 E-value=7.1e-12 Score=102.98 Aligned_cols=235 Identities=18% Similarity=0.229 Sum_probs=141.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcc-ccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL-TKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (306)
.++++|+|||||.+|+++|..+.++ ++..+|-|+|+.+.+-|+...- .++.+...+...- ...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr---------------~~a 100 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRR---------------KQA 100 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccCcceEEeccchhhhhhccC---------------ccc
Confidence 4578999999999999999999987 3567999999998876663211 1222211111100 000
Q ss_pred hHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCC----CCCCCCCEEEEccHHHHHHHHHh
Q 021871 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK----IGGYLPGVHYIRDVADADALISS 203 (306)
Q Consensus 128 ~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~ 203 (306)
. +--.+.... ...|...+++.+++.+.+|++|.|||+|+|+|.+.+. ..+ +..+.|++...+.....+...+.
T Consensus 101 ~-liP~~a~wi-~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y-~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~ 177 (446)
T KOG3851|consen 101 S-LIPKGATWI-KEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDY-GKIKGLVEALDTPGVCSNYSPKYVDKVYKE 177 (446)
T ss_pred c-cccCCcHHH-HHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceecc-chhcChHhhccCCCcccccChHHHHHHHHH
Confidence 0 000122222 2367777888999999999999999999999987552 222 33456777666555555555554
Q ss_pred hh---cCCeEEEE--------cCCHHHHHHHHHH-HhCCC--cEEEEec--CCcccccccCHHHHHHHHHHHHHcCCEEE
Q 021871 204 LE---KAKKVVVV--------GGGYIGMEVAAAA-VGWKL--DTTIIFP--ENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (306)
Q Consensus 204 ~~---~~~~v~vi--------G~g~~a~e~a~~l-~~~~~--~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~gv~i~ 267 (306)
+. .+.-+--. |+-.-.+-++... .+.+. ++.+++. -+.+.. -....+.+++..++++|++-
T Consensus 178 ~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~vn 254 (446)
T KOG3851|consen 178 LMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNITVN 254 (446)
T ss_pred HHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceEee
Confidence 43 34433333 3333334444433 33443 3444433 233332 34567889999999999999
Q ss_pred cCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871 268 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD 305 (306)
Q Consensus 268 ~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~ 305 (306)
+.-...++..++...+-+....-| ++++++.+-+.+++
T Consensus 255 ~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppm 294 (446)
T KOG3851|consen 255 YKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPM 294 (446)
T ss_pred eccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCC
Confidence 999999998532222211111115 36788888776654
No 95
>PRK09897 hypothetical protein; Provisional
Probab=99.35 E-value=2.5e-11 Score=110.48 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=96.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC----CCCCccccccccCC--CCCCCCCCCccccc------
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPL--DKKPARLPGFHTCV------ 118 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------ 118 (306)
+++|+|||||++|+++|.+|.+.+ ...+|+|+|+....+ |....-...++... ...+...+.|....
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence 368999999999999999999875 356899999976543 32210000000000 00000001111000
Q ss_pred -------------C------CCCCcCChhH-------HhhcC--eEEEeCCcEEEEeCCCC--EEEcCC-CcEEecCcEE
Q 021871 119 -------------G------SGGERQTPEW-------YKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI 167 (306)
Q Consensus 119 -------------~------~~~~~~~~~~-------~~~~~--v~~~~~~~v~~v~~~~~--~v~~~~-g~~~~~~~li 167 (306)
. .....|+... +.+.+ +.++.+++|+++...+. .+.+++ +..+.+|+||
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 0 0000111111 22334 67777889999977544 455544 4678999999
Q ss_pred EeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhC
Q 021871 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 229 (306)
Q Consensus 168 la~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~ 229 (306)
+|+|......+. + .+ .++...++.. ....+. +.+|+|+|.|.+++|++..|...
T Consensus 160 LAtGh~~p~~~~--~--~~--~yi~~pw~~~-~~~~i~-~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 160 IATGHVWPDEEE--A--TR--TYFPSPWSGL-MEAKVD-ACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred ECCCCCCCCCCh--h--hc--cccCCCCcch-hhcCCC-CCeEEEECCCHHHHHHHHHHHhc
Confidence 999975432111 0 11 2333333322 222333 68999999999999999998755
No 96
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.34 E-value=7.3e-11 Score=103.07 Aligned_cols=187 Identities=18% Similarity=0.206 Sum_probs=104.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC----CCCCccccccccCCCCCCCCCCC----cccccC---
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPLDKKPARLPG----FHTCVG--- 119 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--- 119 (306)
+++|+|||||++|+.+|.+|.+.-.+...|.|+|+...++ |....-......+........|. |.....
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4699999999999999999999876566699999998865 32211000000000000000011 110000
Q ss_pred -----------------------CCCCcCChhHHhhcC---eEEEeCCcEEEEeCC----CCEEEcCCCcEEecCcEEEe
Q 021871 120 -----------------------SGGERQTPEWYKEKG---IEMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIVA 169 (306)
Q Consensus 120 -----------------------~~~~~~~~~~~~~~~---v~~~~~~~v~~v~~~----~~~v~~~~g~~~~~~~lila 169 (306)
......+..++++.. +.+. +.+++++... ...+...+|....||-+|+|
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 000001111111111 3333 3345555444 12566678888999999999
Q ss_pred eCCCCccCCCCCCCCCCCE-EEEccHHHHHHHHHhhhcCCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCC
Q 021871 170 TGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN 240 (306)
Q Consensus 170 ~G~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~ 240 (306)
||..+...+. -..+.++- -+..+..... ..+.++...+|+|+|+|.+.+|....+...+ ..+|.++|..
T Consensus 160 tgh~~~~~~~-~~~~~~~~~~~ia~~~~~~-~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 160 TGHSAPPADP-AARDLKGSPRLIADPYPAN-ALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred ccCCCCCcch-hhhccCCCcceeccccCCc-ccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 9987653332 11112221 1233333332 2334555677999999999999999999875 4688888874
No 97
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.32 E-value=9e-13 Score=115.62 Aligned_cols=56 Identities=30% Similarity=0.472 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+++.|++++.+++|+++.. +++.+.+|++.+|+ +.+|.||+|+|.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~ 201 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGA 201 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GG
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccc
Confidence 678888999999999999999999999997 56777789999995 999999999984
No 98
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.31 E-value=3.2e-11 Score=104.42 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
...++++|||||+||++||+.|++.|+ +|.++||++.++
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~---~v~LVEKepsiG 160 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGF---KVYLVEKEPSIG 160 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCC---eEEEEecCCccc
Confidence 345799999999999999999999999 999999998875
No 99
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.28 E-value=4.6e-11 Score=106.37 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+.+.+.+.+++.|++++.+++|.+++.. ++.+ .|.+.+| ++.+|.||+|+|.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~ 202 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGL 202 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCc
Confidence 5678888999999999999999999999863 4444 5788777 8999999999985
No 100
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.28 E-value=2.9e-10 Score=100.89 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=73.7
Q ss_pred EEEcCCHHHHHHH-HHHH----hCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871 211 VVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (306)
Q Consensus 211 ~viG~g~~a~e~a-~~l~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~ 285 (306)
+|++-+..|+|.+ ..+. ..+.+|+++.+.+..++. ..+.+.+.+.+++.|++++.+++|.+++.. ++.+..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~ 294 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTA 294 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEE
Confidence 6788888999988 5554 468999999998888874 378888999999999999999999999864 555555
Q ss_pred EEeCCCC--EEecCEEEEecCC
Q 021871 286 VKLEDGS--TIDADTVILLPYD 305 (306)
Q Consensus 286 v~~~~G~--~i~~d~vv~a~g~ 305 (306)
+.+.+|+ .+++|.||+|+|.
T Consensus 295 v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 295 VWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred EEeeCCceEEEECCEEEEeCCC
Confidence 5555553 5899999999985
No 101
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.23 E-value=9.7e-12 Score=109.85 Aligned_cols=121 Identities=24% Similarity=0.280 Sum_probs=61.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-------CCCcccc-----ccccCCC--CCCCCCCCc---
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-----GYLFPLD--KKPARLPGF--- 114 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-------~~~~~~~-----~~~~~~~--~~~~~~~~~--- 114 (306)
|||+|||||+|||.||..|++.|. +|+|+|+.+..+- .++-+.+ ....... ...+-.+-+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence 699999999999999999999998 9999999987530 1111111 0000000 000000000
Q ss_pred --------------cccc--------CCCCC----cCChhHHhhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCc
Q 021871 115 --------------HTCV--------GSGGE----RQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGS 165 (306)
Q Consensus 115 --------------~~~~--------~~~~~----~~~~~~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~ 165 (306)
.... .+... ..+...+++.+++++++++|.++..++. .+.++++..+.+|.
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0000 00011 1222335667999999999999976443 56776777999999
Q ss_pred EEEeeCCCCc
Q 021871 166 LIVATGCTAS 175 (306)
Q Consensus 166 lila~G~~~~ 175 (306)
||+|+|....
T Consensus 158 vILAtGG~S~ 167 (409)
T PF03486_consen 158 VILATGGKSY 167 (409)
T ss_dssp EEE----SSS
T ss_pred EEEecCCCCc
Confidence 9999997654
No 102
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.22 E-value=2.2e-11 Score=113.21 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=74.1
Q ss_pred HHhhhcCCeEEEEcCCH--HHHHHHHHHHhCCCcEEEEecCCcccccc-------------cCHHHHHHHHHHHHHcCCE
Q 021871 201 ISSLEKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVK 265 (306)
Q Consensus 201 ~~~~~~~~~v~viG~g~--~a~e~a~~l~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~gv~ 265 (306)
.+....++++.++|++. .+.+++..+...+.+++++.+...++... ....+...+.+.+++.|++
T Consensus 151 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~ 230 (574)
T PRK12842 151 ARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIP 230 (574)
T ss_pred HhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCE
Confidence 33334567788999888 68888888887777766554443333210 1245777788888999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCC--CC-EEecC-EEEEecCC
Q 021871 266 FVKGASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TVILLPYD 305 (306)
Q Consensus 266 i~~~~~v~~i~~~~~~~v~~v~~~~--G~-~i~~d-~vv~a~g~ 305 (306)
++.+++|+++.. +++++.+|...+ +. .+.++ .||+|||.
T Consensus 231 i~~~~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg 273 (574)
T PRK12842 231 ILTGTPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGG 273 (574)
T ss_pred EEeCCEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCC
Confidence 999999999986 467777777644 32 36785 79999984
No 103
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.19 E-value=9.8e-10 Score=99.65 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHH----cC--CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~----~g--v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+++ .| ++++++++|++|+..+++. ..|.+.+| ++.+|.||+|+|.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~-~~V~T~~G-~i~A~~VVvaAG~ 271 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSL-YKIHTNRG-EIRARFVVVSACG 271 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCe-EEEEECCC-EEEeCEEEECcCh
Confidence 34677788888888 77 8899999999999743443 36888887 7999999999984
No 104
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.19 E-value=1.5e-10 Score=102.22 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=33.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
++|+|||||++||++|++|++++ ++.+|+|+|+++..+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~-p~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAG-PDVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC-CCCcEEEEecCCCCC
Confidence 37999999999999999999998 467999999987753
No 105
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.18 E-value=1.6e-09 Score=97.07 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
+..+...+.+.++++|++++.+++|++++..+++.+..|++.+| .+.+|.||+|+|
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaag 237 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVA 237 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCC
Confidence 44566667788899999999999999997544566667888888 799999988876
No 106
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.17 E-value=7.4e-10 Score=100.59 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+++.|++|+.+++|++++. ++.+ .|++++| .+.+|.||+|+|.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~~~-~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQPA-VVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CCce-EEEeCCc-EEECCEEEEcccc
Confidence 567778888999999999999999999984 3333 5888877 7999999999883
No 107
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.16 E-value=1.3e-09 Score=97.62 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=38.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL 101 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~ 101 (306)
+||+|||||++|+++|++|++.|. +|+|+|++...++.......|++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~---~V~vle~~~~~~~~as~~~~g~~ 48 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY---QVTVFDRHRYAAMETSFANGGQL 48 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCCCcCcccccCCEE
Confidence 699999999999999999999998 99999999755544444444444
No 108
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.16 E-value=1.7e-09 Score=95.95 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+++.|++++.+++|.+++. +++.+ .|.+.+| ++.+|.||+|+|.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~-~~~~~-~v~~~~~-~i~a~~vV~aaG~ 198 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEP-TELLV-TVKTTKG-SYQANKLVVTAGA 198 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEe-cCCeE-EEEeCCC-EEEeCEEEEecCc
Confidence 456777788888899999999999999986 45555 4777776 8999999999984
No 109
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.16 E-value=7e-10 Score=102.04 Aligned_cols=57 Identities=30% Similarity=0.386 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
...+.+.+.+.+++.|++|+.+++|++|.. +++++.+|++.+|+++.+|.||+|++.
T Consensus 218 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 218 TGALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcH
Confidence 356788899999999999999999999997 456666899999989999999998863
No 110
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.15 E-value=8.7e-11 Score=107.00 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP 303 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~ 303 (306)
...+.+.+.+.+++.|++|+++++|++|.. ++|+.+++.+.+|+.+++|.||.+.
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~ 277 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNA 277 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecC
Confidence 567889999999999999999999999997 5666667888888789999999864
No 111
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.15 E-value=8.4e-10 Score=99.11 Aligned_cols=56 Identities=27% Similarity=0.385 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.++++|++++.+++|++++. .++.+..|++.+| ++.+|.||+|+|.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~t~~~-~~~a~~VV~a~G~ 255 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALGS 255 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCEEEEEEeCCc-EEeCCEEEECCCc
Confidence 446777788888999999999999999986 4555556777765 8999999999984
No 112
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.14 E-value=4.9e-10 Score=106.15 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+++ |++++.+++|++++. .++.+ .|.+.+|..+.+|.||+|+|.
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~-~~~~~-~v~t~~g~~~~ad~VV~A~G~ 461 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLER-EDDGW-QLDFAGGTLASAPVVVLANGH 461 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEE-eCCEE-EEEECCCcEEECCEEEECCCC
Confidence 55778888888888 999999999999986 35555 488888877889999999985
No 113
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.14 E-value=6.5e-10 Score=100.72 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHhCCCcEEEEecCCcc---cccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC-CC--CcEEEEEeC
Q 021871 216 GYIGMEVAAAAVGWKLDTTIIFPENHL---LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE 289 (306)
Q Consensus 216 g~~a~e~a~~l~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~--~~v~~v~~~ 289 (306)
-.||.|+...+.+.-.++.-+.....+ ... ....+...+.+.++++||+++++++|+++..+ ++ ++|++|...
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~yn-qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~ 269 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYN-QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLT 269 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCCCCC-chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEE
Confidence 357888888886552121111111111 111 24678899999999999999999999998864 23 678888875
Q ss_pred C-CC-----EEecCEEEEecCC
Q 021871 290 D-GS-----TIDADTVILLPYD 305 (306)
Q Consensus 290 ~-G~-----~i~~d~vv~a~g~ 305 (306)
. |. ..+.|.||+++|.
T Consensus 270 ~~~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 270 RNGKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred eCCceeEEEecCCCEEEEeCCc
Confidence 3 32 3568999999985
No 114
>PRK06847 hypothetical protein; Provisional
Probab=99.12 E-value=2.8e-10 Score=100.74 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcc---cc--------cc---------------ccC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL---TK--------GY---------------LFP 103 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~---~~--------~~---------------~~~ 103 (306)
+++||+|||||++||++|..|++.|+ +|+|+|+.+........+ .. |. ++.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 45799999999999999999999998 999999976421000000 00 00 000
Q ss_pred -CCCCCCCC----------CCcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEee
Q 021871 104 -LDKKPARL----------PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT 170 (306)
Q Consensus 104 -~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~ 170 (306)
.......+ +....+........+...+.+.++++++++++.+++.... .+.+.+|..+.+|.||.|+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 00000000 0000000001112233334557899999999999876543 5667788889999999999
Q ss_pred CCCCc
Q 021871 171 GCTAS 175 (306)
Q Consensus 171 G~~~~ 175 (306)
|....
T Consensus 160 G~~s~ 164 (375)
T PRK06847 160 GLYSK 164 (375)
T ss_pred CCCcc
Confidence 97654
No 115
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.11 E-value=3.4e-09 Score=93.91 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+.+.|++++.+++|++++. +++.+ .|++++| .+.+|.||+|+|.
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~-~v~~~~g-~~~a~~vV~A~G~ 202 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEA-DGDGV-TVTTADG-TYEAKKLVVSAGA 202 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEe-eCCeE-EEEeCCC-EEEeeEEEEecCc
Confidence 456667777778889999999999999987 34444 5888887 8999999999984
No 116
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.10 E-value=2e-09 Score=94.97 Aligned_cols=51 Identities=20% Similarity=0.355 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+.++ |++++.+++|.+++. + .|++.+| .+.+|.||+|+|.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~ 195 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGA 195 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCC
Confidence 556777777777765 999999999999974 2 4778877 5789999999984
No 117
>PRK07233 hypothetical protein; Provisional
Probab=99.09 E-value=4.1e-10 Score=101.64 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
...+.+.+.+.+++.|++|+++++|++|+.+ ++.+..+. .+|+.+++|.||+|++.
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCH
Confidence 4567888889999999999999999999974 45554444 56678999999999873
No 118
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.08 E-value=1.7e-09 Score=98.17 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC-----EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~-----~i~~d~vv~a~g~ 305 (306)
+..+.+.+.+.+++.|++|.++++|++|...+++++++|++.+|+ ++.+|.||+|++.
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 355778888889889999999999999986567777788887765 7999999999863
No 119
>PLN02612 phytoene desaturase
Probab=99.07 E-value=2.2e-09 Score=99.60 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
..+.+.+.+.+++.|++|+++++|++|+.++++.+.+|++.+|+.+.+|.||+|++
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 56778888999889999999999999997667766678888898999999999986
No 120
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.06 E-value=4.1e-09 Score=93.90 Aligned_cols=55 Identities=25% Similarity=0.318 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
..+.+.+.+.+++.|++++.+++|++++.+ ++.+ .|++++|+++.+|.||.|.|.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vV~AdG~ 167 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRV-RLRLDDGRRLEAALAIAADGA 167 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeE-EEEECCCCEEEeCEEEEecCC
Confidence 456667778888889999999999999864 4444 488888889999999999986
No 121
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.06 E-value=1.8e-09 Score=100.64 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--CCC-EEec-CEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-TIDA-DTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G~-~i~~-d~vv~a~g~ 305 (306)
...+...+.+.+++.|++++.+++|+++.. +++++.+|... ++. .+.+ +.||+|+|-
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg 276 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGG 276 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCC
Confidence 456778888999999999999999999875 46777777553 332 4788 999999984
No 122
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.05 E-value=4.5e-09 Score=95.63 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++.| ++++++++|++++..+++.+ .+.+ .+|+ ++.+|.||+|+|.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg 244 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGG 244 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCc
Confidence 4567778888888876 89999999999997556544 2433 3453 6999999999884
No 123
>PRK07208 hypothetical protein; Provisional
Probab=99.04 E-value=6.4e-10 Score=101.73 Aligned_cols=57 Identities=32% Similarity=0.360 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe--CCCC--EEecCEEEEecC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTVILLPY 304 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G~--~i~~d~vv~a~g 304 (306)
...+.+.+.+.+++.|++|+++++|++|..++++.+..+.. .+|+ .+.+|.||+|++
T Consensus 217 ~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p 277 (479)
T PRK07208 217 PGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMP 277 (479)
T ss_pred cchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence 45678888999999999999999999999855554434443 3453 588999999976
No 124
>PRK06834 hypothetical protein; Provisional
Probab=99.04 E-value=1.3e-09 Score=99.33 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=74.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---cccc---------ccc---cCCC---------
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK---------GYL---FPLD--------- 105 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~~~~---------~~~---~~~~--------- 105 (306)
..+||+||||||+|+++|..|++.|+ +|+|+|+.+......+ .+.. |.+ ....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 45899999999999999999999998 9999999764221100 0000 000 0000
Q ss_pred CCCCCCCCccc-------ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871 106 KKPARLPGFHT-------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 106 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
....+...+.. +........+.+.+++.++++++++++.++..++. .+.+.++..+++++||.|.|....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 00000000000 00000011222334567899999999999876554 455567778999999999998764
No 125
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.04 E-value=6.8e-09 Score=94.35 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEE---eCCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~---~~~G~--~i~~d~vv~a~g~ 305 (306)
+..+...+.+.++++|++++++++|++++..+++.+ .+. +.+|+ ++.+|.||+|+|.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~ 238 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGG 238 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCc
Confidence 567788888889999999999999999987444443 233 23342 6899999999984
No 126
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.03 E-value=6e-09 Score=94.58 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=32.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
++|+|||||+|||+||+.|++.|. ..+|+|+|+++..+
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCc
Confidence 479999999999999999999881 22999999988764
No 127
>PLN02463 lycopene beta cyclase
Probab=99.03 E-value=1.2e-09 Score=98.11 Aligned_cols=123 Identities=19% Similarity=0.280 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc------cc-ccc---c-cCCCC--------CCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA------LT-KGY---L-FPLDK--------KPA 109 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~------~~-~~~---~-~~~~~--------~~~ 109 (306)
...+||+|||||+||+++|..|++.|+ +|+|+|+.+...+.... +. -+. + ..+.. ...
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~ 102 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKK 102 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCc
Confidence 346899999999999999999999998 99999997643322110 00 000 0 00000 000
Q ss_pred CCC-CcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871 110 RLP-GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 110 ~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
... .+...........+.+.+.+.+++++ ..+|.+++..+. .|.+++|..++++.||.|+|....
T Consensus 103 ~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 103 DLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred cccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000 00000000111223333455688886 458888876543 577888889999999999997754
No 128
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.02 E-value=1.3e-09 Score=97.10 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=74.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc---cccccc----cCCCC---CCCC-----CCCc
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKGYL----FPLDK---KPAR-----LPGF 114 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~---~~~~~~----~~~~~---~~~~-----~~~~ 114 (306)
+++||+||||||||++||+.|++.|. +|+|+|+....++.... +....+ ..+.. .... .+.-
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~ 78 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGE 78 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCC
Confidence 46899999999999999999999997 99999998876543221 111111 11100 0000 0000
Q ss_pred ccccC-----------CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EE-EcCCCcEEecCcEEEeeCCCC
Q 021871 115 HTCVG-----------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TL-ITNSGKLLKYGSLIVATGCTA 174 (306)
Q Consensus 115 ~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v-~~~~g~~~~~~~lila~G~~~ 174 (306)
..... ....+.+....++.|.+++..+.+..+..++. .+ ...++..++++++|.|.|...
T Consensus 79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 00000 00011223344567999999999988876553 22 223335899999999999654
No 129
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.01 E-value=1.7e-09 Score=92.40 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=71.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC--cccc-------------------ccccCCCCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTK-------------------GYLFPLDKKPAR 110 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~ 110 (306)
+||+|||||++|+++|+.|++.|. +|+|+|+......... .+.. ..++........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 599999999999999999999998 9999999865322100 0000 000000000000
Q ss_pred --CC--CcccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCC-CcEEecCcEEEeeCCCC
Q 021871 111 --LP--GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTA 174 (306)
Q Consensus 111 --~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~-g~~~~~~~lila~G~~~ 174 (306)
.+ .............+.+.+.+.+++++.++++..+..+.. .+.+.+ +..+++|++|.|+|...
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 00 000000111122334445567899999999988765444 343343 45799999999999764
No 130
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.01 E-value=1.6e-09 Score=97.34 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc--------cCC---CCCCC---------
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL--------FPL---DKKPA--------- 109 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~--------~~~---~~~~~--------- 109 (306)
.++||+||||||+|++||+.|++.|+ +|+|+|+......... .++.+ ++. ..+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~~--~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~ 78 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKNV--TGGRLYAHSLEHIIPGFADSAPVERLITHEKLA 78 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCccc--ccceechhhHHHHhhhhhhcCcccceeeeeeEE
Confidence 46899999999999999999999999 9999999865432110 00000 000 00000
Q ss_pred ----------CCCCcc--c-------ccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEE
Q 021871 110 ----------RLPGFH--T-------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIV 168 (306)
Q Consensus 110 ----------~~~~~~--~-------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lil 168 (306)
.++... . .........+.+.+++.|++++.+++|.++..++.. ....++..++++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~ 158 (428)
T PRK10157 79 FMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVIL 158 (428)
T ss_pred EEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEE
Confidence 000000 0 000000011223344578999999999988654432 2334566899999999
Q ss_pred eeCCCC
Q 021871 169 ATGCTA 174 (306)
Q Consensus 169 a~G~~~ 174 (306)
|+|...
T Consensus 159 A~G~~s 164 (428)
T PRK10157 159 ADGVNS 164 (428)
T ss_pred EeCCCH
Confidence 999754
No 131
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.00 E-value=2.3e-09 Score=89.03 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCC-----------CCCCCC----CCc
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-----------KKPARL----PGF 114 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~----~~~ 114 (306)
..+||+|||||++||++|+.|++.|+ +|+|+||....+... +..+..++.. .....+ .++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 36899999999999999999999998 999999987653110 0111111100 000000 000
Q ss_pred ccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC-----EEEcC-----------CCcEEecCcEEEeeCCCC
Q 021871 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-----TLITN-----------SGKLLKYGSLIVATGCTA 174 (306)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~-----~v~~~-----------~g~~~~~~~lila~G~~~ 174 (306)
...........+.....+.+++++.++.+.++..++. -+.++ +...++++.+|.|||...
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 0000011112333445567899998988988765332 12222 124789999999999664
No 132
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.00 E-value=1.9e-09 Score=89.87 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=71.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCC--------------CCCCCC-CCc
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD--------------KKPARL-PGF 114 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~-~~~ 114 (306)
..+||+|||||++|++||++|++.|+ +|+|+|+....+-.. ...+.+++.. -..... +++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~ 98 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGL 98 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCcc
Confidence 35899999999999999999999998 999999986543110 0111111100 000000 000
Q ss_pred ccccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC-E---EEcC-----------CCcEEecCcEEEeeCCCCc
Q 021871 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-T---LITN-----------SGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~-~---v~~~-----------~g~~~~~~~lila~G~~~~ 175 (306)
...........+.+.+.+.+++++.++.|.++..++. . +.+. +...++++.+|+|+|....
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 0000011112334445667999999988888764322 1 1111 2247999999999997644
No 133
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.00 E-value=2.7e-09 Score=98.96 Aligned_cols=98 Identities=23% Similarity=0.232 Sum_probs=67.7
Q ss_pred cCCeEEEEcCCHHHHHHHHH-------HHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871 206 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~-------l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 278 (306)
.++.+.++|++...++.+.. +.+.+.++++....+.... .....+...+.+.+++.|++++++++++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 35667788888888877653 3444445544333222221 14566788888999999999999999999986
Q ss_pred CCCcEEEEEeC-CCC--EEecC-EEEEecCC
Q 021871 279 SDGRVAAVKLE-DGS--TIDAD-TVILLPYD 305 (306)
Q Consensus 279 ~~~~v~~v~~~-~G~--~i~~d-~vv~a~g~ 305 (306)
++++|++|... +|+ .+.++ .||+|||-
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 56777777664 443 47785 69999874
No 134
>PRK07190 hypothetical protein; Provisional
Probab=99.00 E-value=1.8e-09 Score=98.33 Aligned_cols=122 Identities=22% Similarity=0.245 Sum_probs=73.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-CCCC-cccc---------ccc---------------cC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP-ALTK---------GYL---------------FP 103 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~~~---------~~~---------------~~ 103 (306)
..+||+||||||+||.+|..|++.|. +|+|+|+.+... ..+. .+.. |.+ +.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 45899999999999999999999998 999999986531 1000 0000 000 00
Q ss_pred CCCCC-------CCCCC--c--ccccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEe
Q 021871 104 LDKKP-------ARLPG--F--HTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 169 (306)
Q Consensus 104 ~~~~~-------~~~~~--~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila 169 (306)
..... ..++. . ..... ......+.+.+.+.|++++++++|.++..+.. .+.+.++..+++++||.|
T Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgA 160 (487)
T PRK07190 81 NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGA 160 (487)
T ss_pred CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEEC
Confidence 00000 00000 0 00000 00011222345567899999999999976544 455567778999999999
Q ss_pred eCCCC
Q 021871 170 TGCTA 174 (306)
Q Consensus 170 ~G~~~ 174 (306)
.|...
T Consensus 161 DG~~S 165 (487)
T PRK07190 161 DGSRS 165 (487)
T ss_pred CCCCH
Confidence 99764
No 135
>PRK06184 hypothetical protein; Provisional
Probab=98.98 E-value=2.3e-09 Score=98.52 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=72.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC-C--------------Cccc-----ccc------ccC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALT-----KGY------LFP 103 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~-~--------------~~~~-----~~~------~~~ 103 (306)
+.+||+||||||+||++|..|++.|+ +|+|+|+.+...-. + .++. .+. .+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 45899999999999999999999999 99999997653100 0 0000 000 000
Q ss_pred CCCCCCC--C-------C--Ccc--ccc-CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEc---CCCcEEecC
Q 021871 104 LDKKPAR--L-------P--GFH--TCV-GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYG 164 (306)
Q Consensus 104 ~~~~~~~--~-------~--~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~---~~g~~~~~~ 164 (306)
....... + + .+. ... .......+.+.+.+.++++++++++.+++.++. .+.+ .++..+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 0000000 0 0 000 000 000111233345556899999999999876544 3444 455689999
Q ss_pred cEEEeeCCCC
Q 021871 165 SLIVATGCTA 174 (306)
Q Consensus 165 ~lila~G~~~ 174 (306)
+||.|.|...
T Consensus 159 ~vVgADG~~S 168 (502)
T PRK06184 159 YLVGADGGRS 168 (502)
T ss_pred EEEECCCCch
Confidence 9999999765
No 136
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.98 E-value=9.3e-09 Score=93.67 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=33.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHc----CCCCCcEEEeccCCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP 90 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~----g~~~~~V~vie~~~~~~ 90 (306)
++||+|||||++||++|++|.++ |+ +|+|+|+++..+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence 36999999999999999999998 77 999999998764
No 137
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.97 E-value=8e-09 Score=94.08 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
.+.+.+.+.+.+ ++|.++++|++|+..+ +.+ .|.+.+|+.+.+|.||+|++
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQG-DRY-EISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEEECCC
Confidence 455555555543 6899999999999754 444 58888888899999999986
No 138
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.96 E-value=4.9e-08 Score=85.93 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=56.2
Q ss_pred CCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEecCC
Q 021871 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILLPYD 305 (306)
Q Consensus 230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a~g~ 305 (306)
+..|..+- ++-|+.....+.+.+.+.+++.|++++.+++|.+++. +++.+..|.+.++ ..+++|.+|+|+|.
T Consensus 247 g~~v~E~p---tlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGa 320 (419)
T TIGR03378 247 GLTLCELP---TMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGS 320 (419)
T ss_pred CCCEEeCC---CCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCC
Confidence 45555443 3334444778889999999999999999999999986 5666767887776 47999999999984
No 139
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.95 E-value=3.1e-08 Score=91.70 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CC--CEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G--~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.++++|++++.+++|+++.. +++++.+|++. +| ..+.+|.||.|+|.
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~ 209 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGI 209 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCCh
Confidence 556777777888899999999999999986 45666677652 23 37999999999984
No 140
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.95 E-value=1.9e-08 Score=89.50 Aligned_cols=55 Identities=27% Similarity=0.403 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.++++| ..+..++.+..++.. . ....|.+.+|. +.+|.||+|+|.
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~ 210 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGA 210 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCch
Confidence 4577888999999999 566668899999863 3 44579999985 999999999984
No 141
>PRK07045 putative monooxygenase; Reviewed
Probab=98.95 E-value=2.5e-08 Score=88.79 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=45.1
Q ss_pred HHHHHHHHHHH-HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 250 SLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 250 ~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.+.+.+.+.+. ..|++++++++|+.++.++++.+..|++++|+++.+|.||-|.|.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence 34455666664 458999999999999976677656788899999999999999885
No 142
>PRK10015 oxidoreductase; Provisional
Probab=98.94 E-value=3.8e-09 Score=94.90 Aligned_cols=122 Identities=20% Similarity=0.288 Sum_probs=70.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---ccccc---cccCCC--CCCC-C-CC-------
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKG---YLFPLD--KKPA-R-LP------- 112 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~~~~~---~~~~~~--~~~~-~-~~------- 112 (306)
.++||+||||||||++||+.|++.|+ +|+|+|+.+..+.... .+... .+.+.. ..+. . ..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 80 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEE
Confidence 45899999999999999999999998 9999999876432110 00000 000000 0000 0 00
Q ss_pred --------Ccc------------cccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEE--EcCCCcEEecCcEEEee
Q 021871 113 --------GFH------------TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVAT 170 (306)
Q Consensus 113 --------~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v--~~~~g~~~~~~~lila~ 170 (306)
.+. .+......+.+.+.+++.|++++.+++|..+..++..+ ...++..+.++.+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~Ad 160 (429)
T PRK10015 81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD 160 (429)
T ss_pred eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEcc
Confidence 000 00000000012233455789999998998876544322 23345579999999999
Q ss_pred CCCC
Q 021871 171 GCTA 174 (306)
Q Consensus 171 G~~~ 174 (306)
|...
T Consensus 161 G~~s 164 (429)
T PRK10015 161 GVNS 164 (429)
T ss_pred Ccch
Confidence 9653
No 143
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.93 E-value=4.6e-09 Score=93.95 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=72.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcC--CCCCcEEEeccCCCCCCC---CC-cc-------c--cccc--------------
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAYAPYE---RP-AL-------T--KGYL-------------- 101 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g--~~~~~V~vie~~~~~~~~---~~-~~-------~--~~~~-------------- 101 (306)
++||+|||||++||++|..|++.| + +|+|+|+.+..... +. .+ . -|.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~---~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 77 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHL---PVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMV 77 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCC---EEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence 479999999999999999999996 6 99999997542110 00 00 0 0000
Q ss_pred -cCCCC-CCC--CCCCcc-----------cccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecC
Q 021871 102 -FPLDK-KPA--RLPGFH-----------TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (306)
Q Consensus 102 -~~~~~-~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~ 164 (306)
..... ... ....+. .+........+.+.+.+.+++++.+++|..++.+.. .+.+.++..+.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 157 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR 157 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 00000 000 000000 000011112233334556899999999999876544 4666778889999
Q ss_pred cEEEeeCCCCc
Q 021871 165 SLIVATGCTAS 175 (306)
Q Consensus 165 ~lila~G~~~~ 175 (306)
.||.|.|....
T Consensus 158 ~vI~AdG~~S~ 168 (403)
T PRK07333 158 LLVAADGARSK 168 (403)
T ss_pred EEEEcCCCChH
Confidence 99999997644
No 144
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.93 E-value=8.2e-08 Score=85.72 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 250 SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 250 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.+.+.+.+.+.+. +++++.+++|++++.+ ++.+ .+.+.+|+++.+|.||.|.|.
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~AdG~ 164 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGCDGV 164 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEECCCc
Confidence 3555566666655 5999999999999864 4444 478888889999999999985
No 145
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.92 E-value=3.3e-09 Score=83.14 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=38.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFP 103 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~ 103 (306)
..||+||||||+||+||++|++.|. +|+|+|++..++ ...+.+|++|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~G--GG~w~GGmlf~ 77 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSFG--GGIWGGGMLFN 77 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCc---eEEEEEeecccC--Ccccccccccc
Confidence 4699999999999999999999998 999999987653 22334455544
No 146
>PRK07236 hypothetical protein; Provisional
Probab=98.92 E-value=8.9e-09 Score=91.56 Aligned_cols=124 Identities=12% Similarity=0.104 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC-cc--c-ccc--cc--CCCCC-CCCCCC----cc
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL--T-KGY--LF--PLDKK-PARLPG----FH 115 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~--~-~~~--~~--~~~~~-~~~~~~----~~ 115 (306)
|+..+|+|||||++||++|..|++.|+ +|+|+|+.+....... .+ . .+. +. ..... ....+. +.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 80 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL 80 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence 556899999999999999999999998 9999999864211100 00 0 000 00 00000 000000 00
Q ss_pred cccCC-----------CCCcCChhHHhh--cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871 116 TCVGS-----------GGERQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 116 ~~~~~-----------~~~~~~~~~~~~--~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
...+. .....+.+.+.+ .+++++++++|+++..++. .+.+++|+.+++|.||.|-|....
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 00000 000111122221 1356888999999976544 567788889999999999996543
No 147
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.92 E-value=3.9e-08 Score=89.07 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHH-HcCCEEEcCceEEEEEeCCCCcEEEEE---eCCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~v~~v~---~~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+. ..|++++++++|+.++..+++.+ .+. +.+|+ ++++|.||+|.|.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGa 245 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGG 245 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCc
Confidence 4456677777775 45999999999999987535554 243 34453 6899999999985
No 148
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.91 E-value=3.2e-08 Score=88.00 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeC-CCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~-~G~~i~~d~vv~a~g~ 305 (306)
...+...+.+.+.+.+ |+++.+++|+.++.+ ++.+. ++++ +|+++.+|.+|-|=|.
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcCCCcEEecCEEEECCCC
Confidence 4456666777777665 999999999999974 45553 7777 9999999999998774
No 149
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.90 E-value=2.4e-09 Score=96.82 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=36.6
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
.+++++|+|||||+|||+||++|.+.|+ +|+|+|.++..+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvG 51 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVG 51 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcC
Confidence 4567899999999999999999999999 899999988864
No 150
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.90 E-value=1.2e-08 Score=92.78 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC--CC--cEEEEEeCCC---CEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~--~v~~v~~~~G---~~i~~d~vv~a~g~ 305 (306)
..-+.+.+.+.++++|++|+++++|++|+..+ ++ ++.+|.+.+| +.+.+|.||+|++.
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV 282 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence 33456778899999999999999999998633 23 3667777554 45899999999873
No 151
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.88 E-value=1.1e-08 Score=91.11 Aligned_cols=123 Identities=16% Similarity=0.296 Sum_probs=71.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCc--------cc---------cccc-----------
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--------LT---------KGYL----------- 101 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~--------~~---------~~~~----------- 101 (306)
+.+||+|||||++|+++|..|++.|+ +|+|+|+.+...+.... +. -|.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 45899999999999999999999998 99999997532111000 00 0000
Q ss_pred -----cCCCCCC-------CCCCCcccccC-CCCCcCChhHHhhc-CeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCc
Q 021871 102 -----FPLDKKP-------ARLPGFHTCVG-SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS 165 (306)
Q Consensus 102 -----~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~ 165 (306)
+.+.... ...+.+..... ......+.+.+.+. +++++.++++..+..++. .+.++++..+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKL 160 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence 0000000 00000000000 00001111222334 888888999998865443 56667787899999
Q ss_pred EEEeeCCCCc
Q 021871 166 LIVATGCTAS 175 (306)
Q Consensus 166 lila~G~~~~ 175 (306)
||.|.|....
T Consensus 161 vI~AdG~~S~ 170 (391)
T PRK08020 161 VIGADGANSQ 170 (391)
T ss_pred EEEeCCCCch
Confidence 9999997653
No 152
>PRK09126 hypothetical protein; Provisional
Probab=98.88 E-value=5.2e-09 Score=93.26 Aligned_cols=122 Identities=22% Similarity=0.371 Sum_probs=72.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---c----c-cc--------ccc---c-----C--
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---A----L-TK--------GYL---F-----P-- 103 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~----~-~~--------~~~---~-----~-- 103 (306)
+.+||+|||||++|+++|..|++.|+ +|+|+|+.+......+ . + +. |.. . +
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~ 78 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLR 78 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence 46899999999999999999999999 9999999864211000 0 0 00 000 0 0
Q ss_pred -----CCCCCCCCCCcccc-cCCCCC------cCCh----hHH-hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecC
Q 021871 104 -----LDKKPARLPGFHTC-VGSGGE------RQTP----EWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (306)
Q Consensus 104 -----~~~~~~~~~~~~~~-~~~~~~------~~~~----~~~-~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~ 164 (306)
.......+ .+... ...... ..+. +.+ +..+++++.++++.+++.+.. .+.++++..+++|
T Consensus 79 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~ 157 (392)
T PRK09126 79 DAKVLNGRSPFAL-TFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTAR 157 (392)
T ss_pred eEEEEcCCCCcee-EeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeC
Confidence 00000000 00000 000000 0011 111 235789999999999876543 5667788899999
Q ss_pred cEEEeeCCCCc
Q 021871 165 SLIVATGCTAS 175 (306)
Q Consensus 165 ~lila~G~~~~ 175 (306)
++|.|.|....
T Consensus 158 ~vI~AdG~~S~ 168 (392)
T PRK09126 158 LLVAADSRFSA 168 (392)
T ss_pred EEEEeCCCCch
Confidence 99999997644
No 153
>PLN02576 protoporphyrinogen oxidase
Probab=98.88 E-value=7.6e-08 Score=88.50 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=34.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 90 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~~~ 90 (306)
..+||+|||||++||++|++|.+. |+ +|+|+|+++..+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence 456999999999999999999999 88 999999998764
No 154
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.87 E-value=2.1e-08 Score=92.01 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-----CEEecCEEEEecC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTVILLPY 304 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-----~~i~~d~vv~a~g 304 (306)
...+.+.+.+.+++.|++|+++++|++|.. +++++.+|.+.+| +++.+|.||++++
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~ 291 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLP 291 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCC
Confidence 567888999999999999999999999997 4555556666554 5789999999876
No 155
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.87 E-value=8.2e-09 Score=91.88 Aligned_cols=118 Identities=14% Similarity=0.219 Sum_probs=69.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC-cc-ccc--------cc-cCCCC-CCCCCCCcc-----
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL-TKG--------YL-FPLDK-KPARLPGFH----- 115 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~-~~-~~~--------~~-~~~~~-~~~~~~~~~----- 115 (306)
||+|||||++|+++|+.|++.|+ +|+|+|+.+..+.... .. ... .. ..+.. .....+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 79999999999999999999998 9999999865432110 00 000 00 00000 000000000
Q ss_pred ---cccCCCCCcCChhHHhhcCeEEEeCCcEEEEeCC-C--CEEEcCCCcEEecCcEEEeeCCCC
Q 021871 116 ---TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA 174 (306)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~-~--~~v~~~~g~~~~~~~lila~G~~~ 174 (306)
.+........+.+.+.+.+++++ ..++..+... . ..+.++++..++++.||.|+|...
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00000111222333455678775 5578877654 2 356777777899999999999876
No 156
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.87 E-value=1.6e-07 Score=85.73 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--CC--CEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G--~~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++.|++++.+++|+++.. +++++.+|... +| ..+.++.||+|||-
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 356777888888999999999999999986 56777777763 33 35889999999983
No 157
>PRK08244 hypothetical protein; Provisional
Probab=98.86 E-value=1e-08 Score=94.11 Aligned_cols=120 Identities=18% Similarity=0.327 Sum_probs=70.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCC-CC--------------Ccc-----------ccccccCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PAL-----------TKGYLFPL 104 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~-~~--------------~~~-----------~~~~~~~~ 104 (306)
.+||+||||||+||++|..|++.|+ +|+|+|+.+.... .+ .++ ....+...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 4799999999999999999999999 9999999765310 00 000 00000000
Q ss_pred CCCCCCCC------CcccccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcC--CC-cEEecCcEEEeeCC
Q 021871 105 DKKPARLP------GFHTCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG-KLLKYGSLIVATGC 172 (306)
Q Consensus 105 ~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~--~g-~~~~~~~lila~G~ 172 (306)
. ...++. .+..... ......+.+.+++.++++++++++.++..++. .+.+. ++ ..+++|++|.|.|.
T Consensus 79 ~-~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~ 157 (493)
T PRK08244 79 D-TRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGA 157 (493)
T ss_pred c-ccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCC
Confidence 0 000000 0000000 00111222334456899999999999876554 33332 45 47999999999997
Q ss_pred CC
Q 021871 173 TA 174 (306)
Q Consensus 173 ~~ 174 (306)
..
T Consensus 158 ~S 159 (493)
T PRK08244 158 GS 159 (493)
T ss_pred Ch
Confidence 65
No 158
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.85 E-value=1.2e-08 Score=94.62 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+..+||+|||||++||++|..|++.|+ +|+|+|+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 456899999999999999999999998 9999999865
No 159
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.85 E-value=1.1e-07 Score=87.24 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
...+.+.+.+.+++.|++|+.+++|++|.. +++++.+|++.+|+++++|.||+|++
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~ 283 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNAT 283 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCC
Confidence 356788899999999999999999999987 46777799999998999999999876
No 160
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.85 E-value=8.2e-09 Score=69.96 Aligned_cols=78 Identities=17% Similarity=0.341 Sum_probs=59.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHHhh
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (306)
+|+|||||+.|+.+|..|++.|. +|+++++.+... . .+.. +....+.+.+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~-~--~~~~----------------------~~~~~~~~~l~~ 52 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL-P--GFDP----------------------DAAKILEEYLRK 52 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS-T--TSSH----------------------HHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh-h--hcCH----------------------HHHHHHHHHHHH
Confidence 58999999999999999999997 999999987742 1 0000 002456777888
Q ss_pred cCeEEEeCCcEEEEeCCCCE--EEcCCC
Q 021871 133 KGIEMIYQDPVTSIDIEKQT--LITNSG 158 (306)
Q Consensus 133 ~~v~~~~~~~v~~v~~~~~~--v~~~~g 158 (306)
.++++++++.+..+..+... +.++||
T Consensus 53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 99999999999999876542 555443
No 161
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.84 E-value=9.4e-09 Score=90.82 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=68.9
Q ss_pred cEEEEcCChHHHHHHHHH--HHcCCCCCcEEEeccCCCCCCCCCccccccccC------------CCCCCCCCCCccccc
Q 021871 53 EFVIVGGGNAAGYAARTF--VEHGMADGRLCIVSKEAYAPYERPALTKGYLFP------------LDKKPARLPGFHTCV 118 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L--~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 118 (306)
||+|||||+||+++|++| ++.|. +|+|+|+.....+.... ..+++.. |.......+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~---~Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGL---SVLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCC---EEEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 55555 99999998765332211 1111100 000000001111000
Q ss_pred CC---------CCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871 119 GS---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 119 ~~---------~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
.. .....+.+.+...++ ...+.+|.+|+.... .+.+++|..++++.|+-|.|....
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 00 111111222222243 456789999987765 678889989999999999995543
No 162
>PLN02697 lycopene epsilon cyclase
Probab=98.84 E-value=1.1e-08 Score=93.45 Aligned_cols=121 Identities=14% Similarity=0.186 Sum_probs=69.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCC----Cccc-cc---cc-cCCCCCCCCCCCcccc-cCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALT-KG---YL-FPLDKKPARLPGFHTC-VGS 120 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~----~~~~-~~---~~-~~~~~~~~~~~~~~~~-~~~ 120 (306)
.+||+|||||++|+++|..|++.|+ +|+++|+.....-.. ..+. -+ ++ ..|.......+..... ...
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~ 184 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGR 184 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC---cEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccC
Confidence 5899999999999999999999998 999999853221000 0000 00 00 0000000000000000 000
Q ss_pred --------CCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--E-EEcCCCcEEecCcEEEeeCCCCc
Q 021871 121 --------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 121 --------~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~-v~~~~g~~~~~~~lila~G~~~~ 175 (306)
.....+.+.+.+.++++ .+++|..+..+.. . +.+.++..+.++.||.|+|....
T Consensus 185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 185 AYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred cccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 00112223334568887 4678888875433 2 34567778999999999998763
No 163
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.83 E-value=1.3e-08 Score=90.55 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=33.7
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
+.+||+|||||++|+++|+.|++.|+ +|+|+|+....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCc
Confidence 35799999999999999999999998 99999998663
No 164
>PRK08013 oxidoreductase; Provisional
Probab=98.83 E-value=1.1e-08 Score=91.30 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=71.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC--C---C---cccc---------ccccCCCCC-CCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--R---P---ALTK---------GYLFPLDKK-PARL 111 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~--~---~---~~~~---------~~~~~~~~~-~~~~ 111 (306)
+.+||+||||||+|+++|..|++.|+ +|+|+|+.+..... . . .+.. |.+-..... ...+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~ 78 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY 78 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence 45899999999999999999999999 99999997652110 0 0 0000 000000000 0000
Q ss_pred CCc--------ccc-c-----CCCC----------CcCChhHHhhc-CeEEEeCCcEEEEeCCCC--EEEcCCCcEEecC
Q 021871 112 PGF--------HTC-V-----GSGG----------ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (306)
Q Consensus 112 ~~~--------~~~-~-----~~~~----------~~~~~~~~~~~-~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~ 164 (306)
..+ ... . +... ...+.+.+.+. ++++++++++..++.++. .+.+.+|..+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 158 (400)
T PRK08013 79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR 158 (400)
T ss_pred cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence 000 000 0 0000 00111112333 689999999999866543 5666788899999
Q ss_pred cEEEeeCCCCc
Q 021871 165 SLIVATGCTAS 175 (306)
Q Consensus 165 ~lila~G~~~~ 175 (306)
+||-|.|....
T Consensus 159 lvVgADG~~S~ 169 (400)
T PRK08013 159 LVVGADGANSW 169 (400)
T ss_pred EEEEeCCCCcH
Confidence 99999997643
No 165
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.83 E-value=1.1e-08 Score=91.87 Aligned_cols=57 Identities=30% Similarity=0.409 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++.|++|+.+++++++.. ++++|.+|... +|+ .+.++.||+|||-
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 456778899999999999999999999987 57788898887 444 5789999999984
No 166
>PLN02487 zeta-carotene desaturase
Probab=98.83 E-value=2.1e-08 Score=92.41 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC--CC--cEEEEEe---CCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~--~v~~v~~---~~G~~i~~d~vv~a~g~ 305 (306)
...+.+.+.+.++++|++|++++.|++|+.+. ++ ++.+|++ .+++.+.+|.||+|++.
T Consensus 294 ~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~ 358 (569)
T PLN02487 294 DVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDV 358 (569)
T ss_pred hHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCH
Confidence 44588999999999999999999999998742 33 3678888 34457899999999874
No 167
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.83 E-value=5.1e-08 Score=86.88 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=54.1
Q ss_pred HHHHHhCCCcEEEEecCCcccc-cccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871 223 AAAAVGWKLDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301 (306)
Q Consensus 223 a~~l~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~ 301 (306)
...+.+.+..++....+ +..+ ......+.+.+.+.+++.|++++.+++|+++.. +++.+ .+.+ +++.+.+|.||+
T Consensus 79 ~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~-~v~~-~~~~i~ad~VIl 154 (400)
T TIGR00275 79 IDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKK-DDNGF-GVET-SGGEYEADKVIL 154 (400)
T ss_pred HHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe-cCCeE-EEEE-CCcEEEcCEEEE
Confidence 34444455555543322 2222 112467888899999999999999999999986 34443 5666 456899999999
Q ss_pred ecCC
Q 021871 302 LPYD 305 (306)
Q Consensus 302 a~g~ 305 (306)
|+|.
T Consensus 155 AtG~ 158 (400)
T TIGR00275 155 ATGG 158 (400)
T ss_pred CCCC
Confidence 9985
No 168
>PLN02268 probable polyamine oxidase
Probab=98.82 E-value=6.6e-08 Score=87.39 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=33.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
.+|+|||||+|||+||+.|.+.|+ +|+|+|+++..+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCC
Confidence 489999999999999999999998 999999998875
No 169
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.82 E-value=2.3e-08 Score=89.01 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=33.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
++.+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCC
Confidence 456899999999999999999999998 9999999864
No 170
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.81 E-value=3.2e-07 Score=79.74 Aligned_cols=58 Identities=26% Similarity=0.435 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 247 ~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
..+.+...+.+.+++.|++++++++|..|+. +++.+..|.+++|.++++|.||+|+|.
T Consensus 171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred chHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCc
Confidence 5678889999999999999999999999997 555566899999999999999999996
No 171
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.81 E-value=6.9e-08 Score=74.36 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=29.6
Q ss_pred EEEcCChHHHHHHHHHHHcC--CCCCcEEEeccCCC
Q 021871 55 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAY 88 (306)
Q Consensus 55 vIIGgG~aGl~aA~~L~~~g--~~~~~V~vie~~~~ 88 (306)
+|||||++|++++.+|.++. ....+|+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 69999999999999999984 45679999999654
No 172
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.80 E-value=1.5e-08 Score=90.79 Aligned_cols=122 Identities=18% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC--------CCC-CC-ccc-ccc--c-----cCC--------
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--------PYE-RP-ALT-KGY--L-----FPL-------- 104 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~--------~~~-~~-~~~-~~~--~-----~~~-------- 104 (306)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+.. .+. +. .+. .+. + ++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL---EVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC---EEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 4799999999999999999999998 99999997621 000 00 000 000 0 000
Q ss_pred -------CCCCCCCCCcccc-cC-C---------CCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecC
Q 021871 105 -------DKKPARLPGFHTC-VG-S---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (306)
Q Consensus 105 -------~~~~~~~~~~~~~-~~-~---------~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~ 164 (306)
+........|... .. . .....+.+.+.+.+++++.++++.+++.... .+.+.+|..+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 0000000000000 00 0 0000112223446889999999999876543 5667788889999
Q ss_pred cEEEeeCCCCc
Q 021871 165 SLIVATGCTAS 175 (306)
Q Consensus 165 ~lila~G~~~~ 175 (306)
.||.|.|....
T Consensus 159 ~vVgAdG~~S~ 169 (405)
T PRK05714 159 LVVAADGANSA 169 (405)
T ss_pred EEEEecCCCch
Confidence 99999997653
No 173
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.80 E-value=1.6e-08 Score=90.79 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=33.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence 5899999999999999999999999 99999998653
No 174
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.79 E-value=1.1e-07 Score=85.09 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
...+.+.+.+.++..|.+++++++|++|..++++++.+|++.+|+++.++.||+.+.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 557888899999999999999999999987556777789999999999999998654
No 175
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.79 E-value=1.5e-07 Score=86.47 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe--CCCC--EEecCEEEEecC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTVILLPY 304 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G~--~i~~d~vv~a~g 304 (306)
..+.+.+.+.+++.|++++++++++++.. +++++.+|.. .+|+ .+.+|.||+|+|
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 45667778888899999999999999986 5677766665 3333 588999999998
No 176
>PRK05868 hypothetical protein; Validated
Probab=98.79 E-value=2.7e-08 Score=87.87 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=71.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---------------ccc----------ccc-ccCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALT----------KGY-LFPL 104 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---------------~~~----------~~~-~~~~ 104 (306)
++||+|||||++|+++|..|++.|+ +|+|+|+.+....... ++. .+. +...
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 77 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR 77 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence 3699999999999999999999999 9999999865321000 000 000 0000
Q ss_pred CCCC-CCCCC---cccccCCCC----CcCChhHHh---hcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeC
Q 021871 105 DKKP-ARLPG---FHTCVGSGG----ERQTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG 171 (306)
Q Consensus 105 ~~~~-~~~~~---~~~~~~~~~----~~~~~~~~~---~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G 171 (306)
.... ..... ......... ...+.+.+. ..++++++++++..++.+.. .+.++++.++++|.||-|-|
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 0000 00000 000000000 001122222 25788999999999876544 56778888999999999999
Q ss_pred CCCc
Q 021871 172 CTAS 175 (306)
Q Consensus 172 ~~~~ 175 (306)
....
T Consensus 158 ~~S~ 161 (372)
T PRK05868 158 LHSN 161 (372)
T ss_pred CCch
Confidence 6643
No 177
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.79 E-value=1.7e-07 Score=78.53 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=45.3
Q ss_pred EecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
+...+.+.- ........+++....-.-+|.++++|..+..-++|++ +...+|+.-.+|.||+||-
T Consensus 206 l~~rp~wrt--V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth 270 (447)
T COG2907 206 LPKRPTWRT--VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATH 270 (447)
T ss_pred cCCCCceeE--cccchHHHHHHHhccccceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecC
Confidence 444444432 3333444455555555566999999999998888875 6677798899999999874
No 178
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.79 E-value=3.4e-08 Score=91.82 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=34.5
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
....+||+|||||++||++|..|++.|+ +|+|+|+.+.
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~ 57 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT 57 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 3456899999999999999999999998 9999999874
No 179
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.79 E-value=2.1e-08 Score=89.07 Aligned_cols=122 Identities=14% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---c-----c-cccc-------ccCCC-C---CCC-
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---A-----L-TKGY-------LFPLD-K---KPA- 109 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~-----~-~~~~-------~~~~~-~---~~~- 109 (306)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+...+... . + +.+. ++... . .+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 4799999999999999999999999 9999998752111100 0 0 0000 00000 0 000
Q ss_pred C-----CCC-cccccCCC----C--C----cCCh----hHHhh-cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcE
Q 021871 110 R-----LPG-FHTCVGSG----G--E----RQTP----EWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL 166 (306)
Q Consensus 110 ~-----~~~-~~~~~~~~----~--~----~~~~----~~~~~-~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~l 166 (306)
. ... ........ . + ..+. +.+.+ .+++++.++++.+++.+.. .+.+++|..+++|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 0 000 00000000 0 0 0011 11122 3688999999999876443 677888889999999
Q ss_pred EEeeCCCCc
Q 021871 167 IVATGCTAS 175 (306)
Q Consensus 167 ila~G~~~~ 175 (306)
|.|.|....
T Consensus 160 IgADG~~S~ 168 (384)
T PRK08849 160 IGADGANSQ 168 (384)
T ss_pred EEecCCCch
Confidence 999997654
No 180
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.79 E-value=1.3e-07 Score=80.91 Aligned_cols=94 Identities=24% Similarity=0.326 Sum_probs=75.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---cc--------cc----ccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~---~~--------~~----~~~~~~~~~~~~~~~~~gv~i~~~~~v~ 273 (306)
+++|||+|+.|+..|..|.+.+.+|+++.+.+. +. +. ..+..+...+.+.+++.|+++++ ++|+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997651 11 11 12356778888889999999999 7999
Q ss_pred EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+++. +++.+ .|.+.+|.++.+|.+|+|||.
T Consensus 81 ~v~~-~~~~~-~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 81 KVDL-SDRPF-KVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred EEEe-cCCee-EEEeCCCCEEEeCEEEECCCC
Confidence 9996 34433 577788889999999999996
No 181
>PRK07588 hypothetical protein; Provisional
Probab=98.76 E-value=6e-08 Score=86.41 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=70.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCC---cccc--------ccc-------cCC---------
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK--------GYL-------FPL--------- 104 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~---~~~~--------~~~-------~~~--------- 104 (306)
.||+|||||++||++|..|++.|+ +|+|+|+.+...-... .... |.+ ...
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 389999999999999999999998 9999999865311000 0000 000 000
Q ss_pred CCCCCCCC--CcccccCCCCCc----CChhHH---hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCC
Q 021871 105 DKKPARLP--GFHTCVGSGGER----QTPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT 173 (306)
Q Consensus 105 ~~~~~~~~--~~~~~~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~ 173 (306)
......++ .+....+..... .+...+ ...+++++++++|.+++.+.. .+.+++|+.+++|.||.|.|..
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 00000000 000000000000 111111 123588999999999986554 4677788889999999999976
Q ss_pred Cc
Q 021871 174 AS 175 (306)
Q Consensus 174 ~~ 175 (306)
..
T Consensus 158 S~ 159 (391)
T PRK07588 158 SH 159 (391)
T ss_pred cc
Confidence 44
No 182
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.76 E-value=3.6e-08 Score=88.29 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=32.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~ 86 (306)
|..+||+|||||++|+++|..|++.|+ +|+|+|+.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~---~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDL---RIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCC---EEEEEcCC
Confidence 346899999999999999999999998 99999986
No 183
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.75 E-value=4.7e-08 Score=88.28 Aligned_cols=56 Identities=32% Similarity=0.531 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
..+...|.+...++||+++.++ |+.+...++|.+..|++.+|+++++|.+|-|+|.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence 4667778888899999999985 7777776788888999999999999999999996
No 184
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.75 E-value=2.1e-08 Score=89.42 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=32.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHc---CCCCCcEEEeccC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKE 86 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~---g~~~~~V~vie~~ 86 (306)
|+++||+|||||++|+++|+.|++. |+ +|+|+|+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~---~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGL---PVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCC---EEEEEeCC
Confidence 3568999999999999999999998 98 99999995
No 185
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.74 E-value=1.7e-07 Score=87.99 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC-CCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+++.|++++.+++|+++..++ ++.+.+|+. .+|+ .+.+|.||+|+|-
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGa 294 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGP 294 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCH
Confidence 56788888899999999999999999988643 466666665 3344 5899999999984
No 186
>PRK06185 hypothetical protein; Provisional
Probab=98.74 E-value=3.8e-08 Score=88.19 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+.+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 456899999999999999999999998 9999998753
No 187
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.73 E-value=1.3e-07 Score=83.88 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=66.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---------------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------- 243 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------------------------------------------- 243 (306)
+|+|||+|++|+-.|..+++.+.+|.++++++...
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 48999999999999999999999999999987753
Q ss_pred ---------------------ccc-cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871 244 ---------------------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301 (306)
Q Consensus 244 ---------------------~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~ 301 (306)
|.. -...+.+.+.+.+++.||+++++++|.+|... ++.+..|++++++.+.+|.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence 000 11346778889999999999999999999874 4444478886777999999999
Q ss_pred ecCC
Q 021871 302 LPYD 305 (306)
Q Consensus 302 a~g~ 305 (306)
|+|.
T Consensus 161 AtGG 164 (409)
T PF03486_consen 161 ATGG 164 (409)
T ss_dssp ----
T ss_pred ecCC
Confidence 9985
No 188
>PRK06753 hypothetical protein; Provisional
Probab=98.73 E-value=8.2e-08 Score=84.99 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=68.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCcc--c-c--------ccc---------------cCC-C
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL--T-K--------GYL---------------FPL-D 105 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~--~-~--------~~~---------------~~~-~ 105 (306)
||+|||||++||++|..|++.|+ +|+|+|+++........+ . . |.. +.. .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 79999999999999999999999 999999987532110000 0 0 000 000 0
Q ss_pred CCCCCCCCccc--ccCCCCCcCChhHHhh--cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCC
Q 021871 106 KKPARLPGFHT--CVGSGGERQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (306)
Q Consensus 106 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~ 174 (306)
...... .+.. ....-....+...+.+ .+.++++++++.+++.++. .+.+++|..+++|.||.|.|...
T Consensus 79 ~~~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 79 TLLNKV-KLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CEEeec-ccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 000000 0000 0000000112222222 2356888999999976544 56677888899999999999653
No 189
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.73 E-value=4.2e-09 Score=92.27 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
+||+|||||++|+++|..|+++|+ +|+|+|+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence 699999999999999999999999 99999998764
No 190
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.73 E-value=1.5e-07 Score=78.50 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEe-CCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
.......++..+++.|+.++.+..|..+.. ++.+..+.|+|.+|....++.+|+++|
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~G 209 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVG 209 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEec
Confidence 456677889999999999999999988762 345556689999998899999999987
No 191
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.72 E-value=6.1e-08 Score=86.10 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=70.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCC------C-Ccccc---------ccc---------------
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---------GYL--------------- 101 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~------~-~~~~~---------~~~--------------- 101 (306)
||+|||||++|+++|+.|++.|+ +|+|+|+.+..... + ..+.. |..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 79999999999999999999998 99999998653110 0 00000 000
Q ss_pred -cCCCC-CCCCCC-------Cccccc-CCCCCcCChhHHhhcC-eEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEE
Q 021871 102 -FPLDK-KPARLP-------GFHTCV-GSGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 168 (306)
Q Consensus 102 -~~~~~-~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~-v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lil 168 (306)
+.... ....++ .+.... .......+.+.+.+.+ ++++.+++|.+++.... .+.++++..+.+|.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 00000 000000 000000 0000111222234455 88999999999876544 46667888899999999
Q ss_pred eeCCCCc
Q 021871 169 ATGCTAS 175 (306)
Q Consensus 169 a~G~~~~ 175 (306)
|.|....
T Consensus 158 adG~~S~ 164 (385)
T TIGR01988 158 ADGANSK 164 (385)
T ss_pred eCCCCCH
Confidence 9997643
No 192
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.72 E-value=2.8e-08 Score=88.25 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=69.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCCCCCCCC------Ccccc---------ccccCCCCCCCCCCCcc-
Q 021871 53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYER------PALTK---------GYLFPLDKKPARLPGFH- 115 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~- 115 (306)
||+||||||+|+++|..|++.| + +|+|+|+.+...... ..+.. |..............+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999999 9 999999976432110 00000 00000000000000000
Q ss_pred -------c--c-------------c-CCCCCcCChhHHhh-cCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEe
Q 021871 116 -------T--C-------------V-GSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 169 (306)
Q Consensus 116 -------~--~-------------~-~~~~~~~~~~~~~~-~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila 169 (306)
. . . .......+.+.+.+ .+++++.+++|+++..... .+.++++..+.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 0 0 00000111122333 3889998999999875443 566777888999999999
Q ss_pred eCCCC
Q 021871 170 TGCTA 174 (306)
Q Consensus 170 ~G~~~ 174 (306)
.|...
T Consensus 158 dG~~S 162 (382)
T TIGR01984 158 DGANS 162 (382)
T ss_pred cCCCh
Confidence 99764
No 193
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.72 E-value=1.5e-07 Score=86.46 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---CC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G~--~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+.+.|++++.+++|+++.. +++.+ +|.+.+ |+ .+.++.||.|+|.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~-~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~ 214 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARR-ENGLW-HVTLEDTATGKRYTVRARALVNAAGP 214 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-eCCEE-EEEEEEcCCCCEEEEEcCEEEECCCc
Confidence 456666777778899999999999999986 34443 455543 53 6899999999984
No 194
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.72 E-value=7e-08 Score=85.04 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=65.3
Q ss_pred cEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCCCCCCCCccccccccCCCC----------CCCCCCCcccccC-
Q 021871 53 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDK----------KPARLPGFHTCVG- 119 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~- 119 (306)
||+|||||+||+++|..|++. |+ +|+++|+.+...-... .+++..... ....++.+.-...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~---~V~lle~~~~~~~~~t---w~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF---RIRVIEAGRTIGGNHT---WSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC---eEEEEeCCCCCCCccc---ceecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 799999999999999999987 66 9999999874321000 000000000 0000111000000
Q ss_pred -----CCCC-----cCChhHH-hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871 120 -----SGGE-----RQTPEWY-KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 120 -----~~~~-----~~~~~~~-~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
...+ ..+.+.+ ++.+..+.++.+|..++.+ .+.+.+|..++++.||.|.|..+.
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCCC
Confidence 0000 0111222 2223336667888888544 366678889999999999997743
No 195
>PRK06126 hypothetical protein; Provisional
Probab=98.71 E-value=8.8e-08 Score=89.07 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+..+||+|||||++||++|..|+++|+ +|+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence 446899999999999999999999999 9999999865
No 196
>PRK11445 putative oxidoreductase; Provisional
Probab=98.71 E-value=9.4e-08 Score=83.84 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
++||+||||||+|+++|..|++. + +|+++|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCc
Confidence 47999999999999999999998 7 9999998864
No 197
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.4e-08 Score=89.84 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=33.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
++|+|+|||+|||+||++|++.|+ +|+|+|.++..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccC
Confidence 489999999999999999999999 999999988764
No 198
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.70 E-value=6.3e-08 Score=86.17 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=30.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~ 86 (306)
+||+||||||||+++|+.|++.|+ +|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 699999999999999999999998 99999997
No 199
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.69 E-value=1e-06 Score=73.47 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=54.5
Q ss_pred CcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCE--EecCEEEEecCC
Q 021871 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTVILLPYD 305 (306)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~--i~~d~vv~a~g~ 305 (306)
|+.-|+...-.+.+.+.+.++..|+-+..+-+|...+. .+++|..|.+.++.. +.+|.+|+|+|.
T Consensus 249 PtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGs 315 (421)
T COG3075 249 PTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGS 315 (421)
T ss_pred CCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccc
Confidence 44445545667888999999999999999999999997 688888999998764 679999999985
No 200
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=6.4e-07 Score=83.87 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
..+...+.+.+++.||+++.++.++++..++++++.+|.. .+|+ .+.++.||+|||-
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 3456667777778899999999999987544578888864 4564 5789999999984
No 201
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.67 E-value=3.4e-07 Score=78.54 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---------------CCEEecCEEEEecC
Q 021871 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTVILLPY 304 (306)
Q Consensus 250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---------------G~~i~~d~vv~a~g 304 (306)
.+..++-+..++.||+|+.+.-..++.-++||.|.+|.+.| |-.+.+..-|+|-|
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG 253 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG 253 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence 45667778889999999999999888888899998998865 22566666666644
No 202
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.67 E-value=6.4e-08 Score=88.89 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC----CEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G----~~i~~d~vv~a~g~ 305 (306)
+..+...+.+..+++|++++.+++|+++..+ ++.+ .|.+.++ .++.+|.||.|+|.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~g~~~~i~a~~VVnAaG~ 213 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE-GGLW-RVETRDADGETRTVRARALVNAAGP 213 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCEE-EEEEEeCCCCEEEEEecEEEECCCc
Confidence 5566677778889999999999999999863 4433 5666554 25899999999984
No 203
>PLN02676 polyamine oxidase
Probab=98.66 E-value=1.9e-07 Score=85.19 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=34.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
...+||+|||||++||++|++|++.|.. +|+|+|+++..+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~G 63 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIG 63 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCC
Confidence 3467999999999999999999999963 599999987754
No 204
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.65 E-value=1.6e-07 Score=84.90 Aligned_cols=98 Identities=15% Similarity=0.307 Sum_probs=73.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+++|+|||||++|+.+|..|++.|. +|+++++.+...-. .. .. ....+.+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l~~------------~~--~~-----------~~~~~~~~l 208 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTILPR------------EE--PS-----------VAALAKQYM 208 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccCCC------------CC--HH-----------HHHHHHHHH
Confidence 4689999999999999999999997 99999987653100 00 00 012345667
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEE-EcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v-~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++++.+++.++..+ ...++..+.+|.+++|+|..|..
T Consensus 209 ~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 209 EEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCc
Confidence 88999999999999998654433 33456689999999999998763
No 205
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.65 E-value=8.2e-08 Score=86.75 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=30.3
Q ss_pred CcEEEEcCChHHHHHHHHHHH----cCCCCCcEEEeccCC
Q 021871 52 REFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEA 87 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~----~g~~~~~V~vie~~~ 87 (306)
+||+|||||++|+++|..|++ .|+ +|+|+|+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~---~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDL---KVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCC---eEEEEeCCC
Confidence 589999999999999999998 788 999999943
No 206
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=1.2e-06 Score=81.90 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
..+...+.+...+.|++++.++.++++..+++|++.+|.. .+|+ .+.++.||+|||.
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 4456667777778899999999999987545677778765 3454 5789999999985
No 207
>PRK07121 hypothetical protein; Validated
Probab=98.64 E-value=7.1e-07 Score=81.91 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC-CC--EEec-CEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G~--~i~~-d~vv~a~g~ 305 (306)
...+...+.+.+++.|++++++++++++..++++++.+|...+ |+ .+.+ +.||+|||-
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 4567778888899999999999999998764467787877643 32 4778 999999984
No 208
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.64 E-value=2.5e-08 Score=89.70 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=30.3
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCC--C---ccc---------cccc---c-CCCC---CCC-C
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--P---ALT---------KGYL---F-PLDK---KPA-R 110 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~--~---~~~---------~~~~---~-~~~~---~~~-~ 110 (306)
||||||||++|++||+.+++.|. +|+|+|+....+-.. . ... .+.. . .... ... .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 89999999999999999999998 999999998764110 0 000 0000 0 0000 000 0
Q ss_pred CCCcc--cccC-CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC---EEEcCC---CcEEecCcEEEeeC
Q 021871 111 LPGFH--TCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---GKLLKYGSLIVATG 171 (306)
Q Consensus 111 ~~~~~--~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~---g~~~~~~~lila~G 171 (306)
..++. .... ......+.+.+.+.++++++++.+.++..++. .|.+.+ ...++++.+|-|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 0111 12223456667778999999999999887763 344443 44899999999999
No 209
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.63 E-value=1e-07 Score=77.24 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=33.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
.+|+|||+|++||+||+.|++.|+ +|+|+||....+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~GvG 37 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRGVG 37 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCCcc
Confidence 479999999999999999999999 999999987754
No 210
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.63 E-value=2e-07 Score=84.10 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=75.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+|+|||||++|+.+|..|++.|. +|+++++.+..... . ++ ......+.+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~~~-------~-~~----------------~~~~~~~~~~l 189 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERILNK-------L-FD----------------EEMNQIVEEEL 189 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccCcc-------c-cC----------------HHHHHHHHHHH
Confidence 4699999999999999999999997 89999987543100 0 00 00013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
++.|++++.+..+.+++.++..+.+.++..+.+|.+++|+|..+.
T Consensus 190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 888999999999999987655445667788999999999998876
No 211
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.62 E-value=1.2e-07 Score=84.06 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=31.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~ 86 (306)
+.||+|||||++|+++|..|++.|+ +|+|+|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGI---KTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCC---eEEEecCC
Confidence 3699999999999999999999999 99999986
No 212
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.62 E-value=2.2e-07 Score=82.37 Aligned_cols=98 Identities=16% Similarity=0.312 Sum_probs=75.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++|+|||||+.|+.+|..|.+.|. +|+++++.+...- ..+ + . .....+.+.+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l~-------~~~-~-----~-----------~~~~~l~~~l 193 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLLA-------SLM-P-----P-----------EVSSRLQHRL 193 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCcccc-------hhC-C-----H-----------HHHHHHHHHH
Confidence 4689999999999999999999997 9999998765310 000 0 0 0013456677
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
++.+++++.++++.++..+.. .+.+.++..+.+|.+|+|+|..++
T Consensus 194 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 194 TEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 889999999999999987543 466778889999999999998875
No 213
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.62 E-value=4.4e-07 Score=73.14 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=65.9
Q ss_pred EEEcCCHHHHHHHHHHHhCCCc-EEEEecCCccccc--------------c----------------------------c
Q 021871 211 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR--------------L----------------------------F 247 (306)
Q Consensus 211 ~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~~~~~--------------~----------------------------~ 247 (306)
+|||+|+.|+-.|..|.+.+.+ ++++++++.+... . .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999988 9999987553210 0 0
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
..++.+.+++..++.++++.++++|++++..+++ + .|++.+++++.+|.||+|||.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w-~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-W-TVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-E-EEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-E-EEEEEecceeeeeeEEEeeec
Confidence 1234566788888889999999999999985444 5 599999889999999999995
No 214
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.61 E-value=1.8e-06 Score=81.22 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+.+.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 45667777787778899999999999976544678888765 3464 5789999999984
No 215
>PRK06996 hypothetical protein; Provisional
Probab=98.61 E-value=1.1e-07 Score=84.86 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCCCCCCC-C--C-cc-------cc--ccc------------
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYE-R--P-AL-------TK--GYL------------ 101 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~~~-~--~-~~-------~~--~~~------------ 101 (306)
..+.+||+||||||+|+++|..|++.|. ...+|+|+|+.+..... . . .+ .. |.+
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 3456899999999999999999999873 12379999997532100 0 0 00 00 000
Q ss_pred cCCCC--------CCCCCCCccccc-CCCCCcCChhHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCC---cEEecCcEE
Q 021871 102 FPLDK--------KPARLPGFHTCV-GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLI 167 (306)
Q Consensus 102 ~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g---~~~~~~~li 167 (306)
..... .....+.+-... ...+...+.+.+.+.+++++.++++..+..... .+.+.++ ..+++|+||
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAV 167 (398)
T ss_pred ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEE
Confidence 00000 000000000000 001112233334556888998999888865544 4555543 589999999
Q ss_pred EeeCC
Q 021871 168 VATGC 172 (306)
Q Consensus 168 la~G~ 172 (306)
.|.|.
T Consensus 168 gADG~ 172 (398)
T PRK06996 168 QAEGG 172 (398)
T ss_pred ECCCC
Confidence 99994
No 216
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.61 E-value=6.5e-08 Score=63.04 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=29.0
Q ss_pred EEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 56 IIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
|||||++||++|+.|++.|+ +|+|+|+.+..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS---EEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC---cEEEEecCcccC
Confidence 89999999999999999998 999999998764
No 217
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.61 E-value=3.7e-07 Score=85.23 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-C--EEec-CEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDA-DTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~--~i~~-d~vv~a~g~ 305 (306)
...+...+.+.+++.||+++.++.++++.. +++++.+|...++ + .+.+ +.||+|||-
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCC
Confidence 556778888999999999999999999875 4778888876544 2 4665 789999984
No 218
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.60 E-value=3e-07 Score=83.67 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=32.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
++||+|||||.|||+||..+++.|. +|+|+||...
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~~ 35 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGIK 35 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence 3799999999999999999999998 9999999753
No 219
>PLN02661 Putative thiazole synthesis
Probab=98.60 E-value=2e-07 Score=79.97 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=32.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYA 89 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~~ 89 (306)
.+||+|||||++|+++|++|++. |+ +|+|+|+....
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~---kV~viEk~~~~ 128 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNV---KVAIIEQSVSP 128 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCC---eEEEEecCccc
Confidence 57999999999999999999976 66 99999997654
No 220
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.60 E-value=1.6e-06 Score=78.54 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC--CCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~--~G~--~i~~d~vv~a~g~ 305 (306)
...+.+.+.+.+++.|++++.+++|+++..++++++.+|... +|+ .+.+|.||+|+|-
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 456788888999999999999999999987556777666653 343 3789999999984
No 221
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.59 E-value=2.3e-07 Score=84.39 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=72.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+.+++|||||++|+.+|..|.+.|. +|+++++.+.... ..+ . +....+.+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll~-----------~~d---~-----------e~~~~l~~~L 221 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLLP-----------GED---E-----------DIAHILREKL 221 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcCc-----------ccc---H-----------HHHHHHHHHH
Confidence 4689999999999999999999987 9999998754310 000 0 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEEEcC-CC--cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v~~~-~g--~~~~~~~lila~G~~~~~ 176 (306)
++.++++++++++.+++.+...+.+. ++ ..+.+|.+++|+|..|+.
T Consensus 222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 88899999999999998765544332 33 368999999999988763
No 222
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.59 E-value=2.5e-07 Score=82.54 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=74.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++|+|||||+.|+.+|..|++.|. +|+++++.+...-. ..+ + .....+.+.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l~~--------~~~--------~--------~~~~~l~~~l 196 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRC---KVTVIELAATVMGR--------NAP--------P--------PVQRYLLQRH 196 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCcchhh--------hcC--------H--------HHHHHHHHHH
Confidence 4689999999999999999999997 99999987653100 000 0 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCC-CEEEcCCCcEEecCcEEEeeCCCCc
Q 021871 131 KEKGIEMIYQDPVTSIDIEK-QTLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~-~~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
++.++++++++.+.+++.+. ..+.+.+++.+.+|.+++|+|..++
T Consensus 197 ~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred HHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChh
Confidence 78899999999999987632 2466778889999999999998876
No 223
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.58 E-value=2.2e-07 Score=85.38 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=32.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
..+||+|||||+||+.||..+++.|. +|.++|+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence 45899999999999999999999998 999999874
No 224
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.58 E-value=9.8e-07 Score=73.16 Aligned_cols=202 Identities=20% Similarity=0.253 Sum_probs=108.2
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccc-----cCCCCCCCCCCCcccccCCCC
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL-----FPLDKKPARLPGFHTCVGSGG 122 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 122 (306)
+...+|+||||||+.|++.|++|.-+ ++..+|.|+|++..+.-+....+.|.+ +++......+ .-+.
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lr-hp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAkl-------CV~G 116 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLR-HPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKL-------CVEG 116 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhc-CCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhh-------hhcc
Confidence 34579999999999999999999887 356699999999887655455544443 2222221111 1111
Q ss_pred CcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCccCCCCCCCCCCCEEEEccHHHHHHHHH
Q 021871 123 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202 (306)
Q Consensus 123 ~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 202 (306)
..-+..++.+.++... ....||+|++.... |. .+.+..
T Consensus 117 ~~LlY~yc~e~~IpyK-----------------------k~GKLIVAt~~~Ei--pr-----------------Ld~L~~ 154 (453)
T KOG2665|consen 117 RELLYEYCDEKKIPYK-----------------------KTGKLIVATESEEI--PR-----------------LDALMH 154 (453)
T ss_pred HHHHHHHhhhcCCChh-----------------------hcceEEEEeChhhc--ch-----------------HHHHHH
Confidence 1223333444433321 23458889886643 21 011111
Q ss_pred hhh-cCC-eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC
Q 021871 203 SLE-KAK-KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280 (306)
Q Consensus 203 ~~~-~~~-~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~ 280 (306)
.-. .+- -+..|- |.-..++-.++.-. -.+..++..+.. -..+...+-+.++..|.++.++-+++.+..+.+
T Consensus 155 ~g~qN~v~glrmie-g~ei~~~EP~crgv---kAl~sPhtGIvD---~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~ 227 (453)
T KOG2665|consen 155 RGTQNGVPGLRMIE-GSEIMEMEPYCRGV---KALLSPHTGIVD---WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKE 227 (453)
T ss_pred hhhhcCCCCeeeec-cchhhhcChhhhhh---hhhcCCCcceee---hHHHHHHHHHHHHHhcccccccceeccchhccC
Confidence 000 000 011111 11112222222111 012233333332 123334455668889999999999999886444
Q ss_pred C---cEEEEEeCCCCEEecCEEEEecCCC
Q 021871 281 G---RVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 281 ~---~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
. .-+.|....|+++....+|-|+|.+
T Consensus 228 ~~~~Ypivv~ngk~ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 228 ATFSYPIVVLNGKGEEKRTKNVVTCAGLQ 256 (453)
T ss_pred CCCCCceEEecCccceeEEeEEEEecccc
Confidence 2 1123545557889999999999865
No 225
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=2.8e-07 Score=83.94 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=74.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++++|||||+.|+.+|..|++.|. +|+++++.+... +... + +....+.+.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l------------~~~~-----~--------~~~~~l~~~l 223 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL------------PGED-----K--------EISKLAERAL 223 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC------------CcCC-----H--------HHHHHHHHHH
Confidence 4689999999999999999999997 999999875531 0000 0 0013456677
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCC---cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g---~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++++.+++.+.. .+.+.++ +.+.+|.+++|+|..|+.
T Consensus 224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 889999999999999986543 3444444 579999999999998764
No 226
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.58 E-value=3.1e-07 Score=83.70 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=73.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++++|||||++|+.+|..|.+.|. +|+++++.+... . .. . + +....+.+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l-~-------~~---~------~--------~~~~~~~~~l 221 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL-P-------GE---D------A--------EVSKVVAKAL 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC-C-------CC---C------H--------HHHHHHHHHH
Confidence 4699999999999999999999997 999999876531 0 00 0 0 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCC--cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG--KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g--~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++++.+++..+. .+.+.++ ..+.+|.+++|+|..|+.
T Consensus 222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 888999999999998876544 3444455 479999999999988763
No 227
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.57 E-value=4.7e-07 Score=81.57 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCC-----EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~-----~i~~d~vv~a~g~ 305 (306)
+..+.-...+...++|.+++..++|+++.. +++ +.+|+..|.+ .+.++.||.|||-
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGp 223 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGP 223 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence 567777888889999999999999999997 555 6688876643 5889999999983
No 228
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.56 E-value=3.5e-06 Score=79.19 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++.||+++.++.++++..+++|++.+|.. .+|+ .+.++.||+|||-
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 45677778888888999999999999977535778888764 3564 5789999999984
No 229
>PRK12839 hypothetical protein; Provisional
Probab=98.56 E-value=2.9e-06 Score=78.97 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe--CCCC-EE-ecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS-TI-DADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G~-~i-~~d~vv~a~g~ 305 (306)
...+...+.+.+++.|++|+.+++++++..++++++.+|.. .+|+ .+ .++.||+|||-
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGG 274 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGG 274 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCC
Confidence 55677778888899999999999999987545788888864 3443 23 45899999984
No 230
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=3.1e-06 Score=79.12 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCC---CcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~---~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++.||+++.++.++++..+++ |++.++.. .+|+ .+.++.||+|||-
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 204 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGG 204 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence 346777788888889999999999999875332 77778764 4564 4789999999985
No 231
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=7.1e-07 Score=84.05 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD 305 (306)
Q Consensus 252 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~ 305 (306)
.+.+.+.+++.||+++.++.++++.. +++++.+|... +|+ .+.++.||+|||-
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 35566677788999999999999875 46788888764 454 5889999999984
No 232
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.55 E-value=4.6e-07 Score=81.12 Aligned_cols=99 Identities=18% Similarity=0.303 Sum_probs=77.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
.+.+++|||||..|+..|..+.++|. +|+|+|+.+.+.- ..++ +....+...
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~iLp-----------~~D~--------------ei~~~~~~~ 223 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRILP-----------GEDP--------------EISKELTKQ 223 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCCC-----------cCCH--------------HHHHHHHHH
Confidence 46789999999999999999999998 9999999876411 0010 112456677
Q ss_pred HhhcCeEEEeCCcEEEEeCCCC--EEEcCCCc--EEecCcEEEeeCCCCcc
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTASR 176 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~--~~~~~~lila~G~~~~~ 176 (306)
+++.+++++.++.+..+..... .+.++++. .+++|.+++|+|-.|+.
T Consensus 224 l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 224 LEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred HHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 7787899999999999877554 56666665 68999999999988774
No 233
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.55 E-value=3e-07 Score=81.96 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=32.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+||+|||||++||++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence 4799999999999999999999999 9999999864
No 234
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.55 E-value=4e-07 Score=82.30 Aligned_cols=95 Identities=14% Similarity=0.231 Sum_probs=74.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+++|||||+.|+.+|..|++.|. +|+++++.+...- . ++ .+....+.+.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~~--------~-~d----------------~~~~~~l~~~l 199 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKINK--------L-MD----------------ADMNQPILDEL 199 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccch--------h-cC----------------HHHHHHHHHHH
Confidence 4689999999999999999999997 9999998754310 0 00 00013456678
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~ 175 (306)
++.|++++.++.+.+++. ..+.+++++.+.+|.+++|+|..|+
T Consensus 200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence 889999999999999874 3567777788999999999998876
No 235
>PRK06116 glutathione reductase; Validated
Probab=98.54 E-value=4.3e-07 Score=82.48 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=75.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+|+|||||+.|+.+|..|.+.|. +|+++++.+...- . +. . +....+.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~--------~-~~--~--------------~~~~~l~~~L 218 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPLR--------G-FD--P--------------DIRETLVEEM 218 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCcc--------c-cC--H--------------HHHHHHHHHH
Confidence 4799999999999999999999997 9999998754210 0 00 0 0023456678
Q ss_pred hhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.+++|.+++.+. ..+.+.++..+.+|.+++|+|..|+.
T Consensus 219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 219 EKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 88999999999999997542 24666778889999999999988764
No 236
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.54 E-value=2.8e-06 Score=79.36 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
..+...+.+.+++.||+++.++.++++.. +++++.+|.. .+|+ .+.++.||+|||-
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 45666777778888999999999999886 4677777654 4564 5889999999984
No 237
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=4.5e-07 Score=82.80 Aligned_cols=98 Identities=19% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+|+|||||++|+.+|..|++.|. +|+++++.+... +... . .....+.+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il------------~~~~--~-----------~~~~~l~~~l 231 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL------------PTED--A-----------ELSKEVARLL 231 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC------------CcCC--H-----------HHHHHHHHHH
Confidence 4799999999999999999999997 999999876421 0000 0 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeC--CCCE--EEcCCC--cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~--~~~~--v~~~~g--~~~~~~~lila~G~~~~~ 176 (306)
++.|++++.++++.+++. ++.. +.+.+| ..+.+|.+++|+|..|+.
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 889999999999999874 3332 233455 369999999999998764
No 238
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.54 E-value=4.9e-07 Score=82.36 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=75.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++++|||||+.|+.+|..|++.|. +|+++++.+... . . ++ .+....+.+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l-------~-~-~d----------------~~~~~~l~~~l 226 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL-------S-F-LD----------------DEISDALSYHL 226 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC-------C-c-CC----------------HHHHHHHHHHH
Confidence 5799999999999999999999997 999999876431 0 0 00 00123456667
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++++..+...+. .+.+.++..+++|.+++|+|..|+.
T Consensus 227 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 227 RDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 788999999999999875433 4556677789999999999988764
No 239
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.54 E-value=1.8e-06 Score=80.14 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCC--EEec-CEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~--~i~~-d~vv~a~g~ 305 (306)
...+...+.+.+++.||+++++++++++.. ++++|.+|... +|+ .+.+ +.||+|||-
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGG 276 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGG 276 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCC
Confidence 567888888889999999999999999875 57888888553 343 3455 689999984
No 240
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.53 E-value=4.7e-07 Score=80.77 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+||+||||||+|+++|+.|++.|+ +|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 489999999999999999999999 9999998754
No 241
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.53 E-value=2e-07 Score=82.93 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence 4799999999999999999999999 9999999874
No 242
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.53 E-value=8.8e-08 Score=75.61 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=30.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
..+||+||||||+||+||++|++.|+ +|+++|++...+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~G 53 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSPG 53 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-B
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCCC
Confidence 35799999999999999999999999 999999986643
No 243
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.53 E-value=1e-06 Score=79.15 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcC-CCCCcEEEeccCCCC
Q 021871 53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYA 89 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g-~~~~~V~vie~~~~~ 89 (306)
+|+|||||++||++|..|++.| + +|+|+|+.+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~---~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHL---NVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC---CEEEEecCCcC
Confidence 7999999999999999999997 5 89999998653
No 244
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.53 E-value=7.3e-07 Score=77.81 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
+...||+|||+|.+||++|++|.+.|+ +|+|+|.++..+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcC
Confidence 456899999999999999999999999 999999988865
No 245
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.52 E-value=5.4e-07 Score=81.66 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=74.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++++|||||+.|+.+|..|++.|. +|+++++.+.... . ++ . +....+.+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~-------~--~d-----~-----------~~~~~l~~~l 217 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELILR-------G--FD-----D-----------DMRALLARNM 217 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCCc-------c--cC-----H-----------HHHHHHHHHH
Confidence 4689999999999999999999997 9999998654210 0 00 0 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.+.+++... ..+.+.++..+.+|.+++|+|..|+.
T Consensus 218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 88899999999999987532 34566677789999999999988763
No 246
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.52 E-value=4.1e-07 Score=81.35 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=32.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+|+|||||++||++|..|++.|+ +|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 689999999999999999999998 9999999865
No 247
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.51 E-value=6e-07 Score=81.38 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=74.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+.+++|||||..|+.+|..|++.|. +|+++++.+... . . ++ . +....+.+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il-~--~------~d--~--------------~~~~~~~~~l 217 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL-R--S------FD--S--------------MISETITEEY 217 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC-c--c------cC--H--------------HHHHHHHHHH
Confidence 4799999999999999999999997 999999875531 0 0 00 0 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCC---CEEEcCCC-cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~---~~v~~~~g-~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.+.++..+. ..+.++++ ..+.+|.+++|+|..|+.
T Consensus 218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 88899999999999987542 24566667 579999999999988774
No 248
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=4.6e-06 Score=77.96 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+.+.||+++.++.++++..+++|++.+|.. .+|+ .+.++.||+|||-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 44567777777778899999999999987545788888865 3564 4779999999984
No 249
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=4.7e-06 Score=77.66 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD 305 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~ 305 (306)
..+...+.+.+.+.||+++.++.++++.. ++|++.+|... +|+ .+.++.||+|||-
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 45666777777778999999999999886 57888888764 333 5789999999984
No 250
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.49 E-value=2.1e-06 Score=77.89 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=57.2
Q ss_pred cEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.-.+..+++..+. +..+...+.+..++.|+.|+.+++|++|... +++..+|+|..| .|++..+|-|+|.
T Consensus 173 ~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGv 241 (856)
T KOG2844|consen 173 YGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGV 241 (856)
T ss_pred eeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhH
Confidence 3456667766554 6678899999999999999999999999974 444449999998 8999999999984
No 251
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.48 E-value=9.1e-07 Score=80.59 Aligned_cols=98 Identities=14% Similarity=0.306 Sum_probs=74.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+.+++|||+|..|+.+|..|++.|. +|+++++.+...-. .... ....+...+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~l~~------------~d~~-------------~~~~l~~~L 228 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRVLPG------------EDAD-------------AAEVLEEVF 228 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcCCCC------------CCHH-------------HHHHHHHHH
Confidence 4689999999999999999999997 99999986542100 0000 013456678
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++++.+++.... .+.+.+++.+++|.+++|+|..|+.
T Consensus 229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 889999999999999864333 4556678889999999999988874
No 252
>PRK07846 mycothione reductase; Reviewed
Probab=98.47 E-value=8.8e-07 Score=80.29 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=71.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+.+++|||||+.|+.+|..|++.|. +|+++++.+... . . .+ .++ ...+.. +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll-~--~------~d-----~~~-----------~~~l~~-l 216 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL-R--H------LD-----DDI-----------SERFTE-L 216 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc-c--c------cC-----HHH-----------HHHHHH-H
Confidence 4799999999999999999999997 999999876531 0 0 00 000 011222 3
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
.+.++++++++++.+++..+. .+.+.++..+++|.+++|+|..|+.
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 356799999999999976543 4566677889999999999998873
No 253
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.47 E-value=2.4e-06 Score=74.60 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=70.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Cccc--------------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL-------------------------------------------- 243 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~-~~~~-------------------------------------------- 243 (306)
.|+|||+|..|++.|..+++.|.+|.++... +.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999998332 2221
Q ss_pred --cc------ccC-HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 244 --QR------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 244 --~~------~~~-~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+. ..+ ..+...+.+.+++ .+++++. .+|+++.. ++++|.+|.+.+|+.+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00 011 2345566677776 5899875 58999987 689999999999999999999999995
No 254
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.47 E-value=3.6e-06 Score=77.63 Aligned_cols=97 Identities=27% Similarity=0.361 Sum_probs=76.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Cccc-----------ccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~ 273 (306)
..+|+|||+|+.|+..|..+++.+.+|+++... ..+. +....+.+.+.+.+.+++.|++++.+++|.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence 467999999999999999999999999988532 1111 111245677788888888999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
++... ++.+ .+.+.+|+.+.+|.+|+|||.
T Consensus 292 ~I~~~-~~~~-~v~~~~g~~i~~d~lIlAtGa 321 (515)
T TIGR03140 292 KIETE-DGLI-VVTLESGEVLKAKSVIVATGA 321 (515)
T ss_pred EEEec-CCeE-EEEECCCCEEEeCEEEECCCC
Confidence 99863 3333 577888888999999999995
No 255
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=7.6e-06 Score=76.04 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++.||++++++.++++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 45677778888888999999999999987544444777653 4564 4889999999984
No 256
>PRK06370 mercuric reductase; Validated
Probab=98.47 E-value=9.5e-07 Score=80.51 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++|+|||||+.|+.+|..|.+.|. +|+++++.+...-. .. . +....+...+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~~------------~~--~-----------~~~~~l~~~l 222 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLLPR------------ED--E-----------DVAAAVREIL 222 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCCcc------------cC--H-----------HHHHHHHHHH
Confidence 4799999999999999999999997 99999987653100 00 0 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEc--C-CCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLIT--N-SGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~--~-~g~~~~~~~lila~G~~~~~ 176 (306)
++.++++++++.+.+++..+. .+.+ . ++..+.+|.+++|+|..|+.
T Consensus 223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 889999999999999986543 2333 2 34579999999999988774
No 257
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.46 E-value=9.1e-07 Score=80.65 Aligned_cols=98 Identities=18% Similarity=0.280 Sum_probs=72.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+++|||||.+|+.+|..|.+.|. +|+++++.+... . ..+. +....+...+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l-~----------~~d~--------------~~~~~l~~~l 217 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL-P----------REEP--------------EISAAVEEAL 217 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC-C----------ccCH--------------HHHHHHHHHH
Confidence 4789999999999999999999997 999999875531 0 0000 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcC---CCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~---~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++++++|.+++.++. .+.+. ++..+.+|.+++|+|..|+.
T Consensus 218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 788999999999999876543 33332 23579999999999988774
No 258
>PLN02507 glutathione reductase
Probab=98.46 E-value=1.1e-06 Score=80.70 Aligned_cols=98 Identities=18% Similarity=0.268 Sum_probs=74.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++|+|||||+.|+.+|..|++.|. +|+++++.+... . . ++ . +....+.+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~l-~------~--~d--~--------------~~~~~l~~~l 254 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELPL-R------G--FD--D--------------EMRAVVARNL 254 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCcC-c------c--cC--H--------------HHHHHHHHHH
Confidence 4689999999999999999999997 999999765420 0 0 00 0 0013455667
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.|.+++..+. .+.+.++..+.+|.+++|+|..|+.
T Consensus 255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 889999999999999875332 4566677789999999999988774
No 259
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.45 E-value=3.6e-06 Score=77.70 Aligned_cols=97 Identities=29% Similarity=0.371 Sum_probs=77.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Cccc-----------ccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~ 273 (306)
...++|||+|+.|+..|..+++.|.+++++... ..+. +....+.+.+.+.+.+++.|++++.+++|.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 347999999999999999999999999988653 1110 111245677888899999999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
++... ++.+ .|.+.+|+.+.+|.+|+|||.
T Consensus 291 ~I~~~-~~~~-~V~~~~g~~i~a~~vViAtG~ 320 (517)
T PRK15317 291 KLEPA-AGLI-EVELANGAVLKAKTVILATGA 320 (517)
T ss_pred EEEec-CCeE-EEEECCCCEEEcCEEEECCCC
Confidence 99873 3443 577888889999999999995
No 260
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.45 E-value=3.6e-07 Score=82.52 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=34.4
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+.+++||+||||||+|+++|+.|++.|+ +|+|+|+...
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~ 73 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD 73 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 4557899999999999999999999999 9999998753
No 261
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.45 E-value=1e-05 Score=75.76 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+.+ .||+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|||-
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGG 198 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCch
Confidence 34566677777665 6999999999999875 4677767653 4564 4789999999984
No 262
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.45 E-value=3.5e-06 Score=76.28 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=73.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc----------------------------------------
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------------------- 246 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~---------------------------------------- 246 (306)
.++|+|||+|++|+-.|..+.+.|.+++++.+++.+.+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 5789999999999999999999999999998865432110
Q ss_pred -------------------cCHHHHHHHHHHHHHcCCE--EEcCceEEEEEeCCCCcEEEEEeCCC--C--EEecCEEEE
Q 021871 247 -------------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTVIL 301 (306)
Q Consensus 247 -------------------~~~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~~~~v~~v~~~~G--~--~i~~d~vv~ 301 (306)
...++.+.+++.+++.|++ |.++++|++|+. .++++ .|++.++ . +..+|.||+
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~-~~~~w-~V~~~~~~~~~~~~~~d~VIv 167 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEP-VDGKW-RVQSKNSGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEee-cCCeE-EEEEEcCCCceEEEEcCEEEE
Confidence 0134666677777788888 899999999997 45555 4665433 2 457999999
Q ss_pred ecCC
Q 021871 302 LPYD 305 (306)
Q Consensus 302 a~g~ 305 (306)
|||.
T Consensus 168 AtG~ 171 (461)
T PLN02172 168 CNGH 171 (461)
T ss_pred eccC
Confidence 9994
No 263
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.45 E-value=2.2e-06 Score=78.82 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC--CC--EEecCEEEEecCC
Q 021871 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTVILLPYD 305 (306)
Q Consensus 249 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G~--~i~~d~vv~a~g~ 305 (306)
..+.+.+.+.++ .||+++.++.++++.. +++++.++...+ |+ .+.++.||+|||-
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 445566666665 6999999999999875 567777776543 33 5789999999984
No 264
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.44 E-value=1e-06 Score=80.43 Aligned_cols=98 Identities=13% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++|+|||||+.|+.+|..|++.|. +|+++++.+...-. . + . +....+...+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l~~---------~--d---~-----------~~~~~~~~~l 234 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFLAA---------A--D---E-----------QVAKEAAKAF 234 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccCCc---------C--C---H-----------HHHHHHHHHH
Confidence 4799999999999999999999997 99999987643100 0 0 0 0013445667
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCC--C--cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~--g--~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.|.+++.++. .+.+.+ + ..+++|.+++|+|..|+.
T Consensus 235 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred HHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 788999999999999986543 334333 3 469999999999988774
No 265
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=1.1e-06 Score=80.22 Aligned_cols=98 Identities=23% Similarity=0.303 Sum_probs=73.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+.+++|||||+.|+.+|..|++.|. +|+++++.+... +... . +....+.+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l------------~~~d--~-----------~~~~~l~~~l 223 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL------------PNED--A-----------EVSKEIAKQY 223 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC------------CccC--H-----------HHHHHHHHHH
Confidence 4699999999999999999999997 999999765421 0000 0 0013456678
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcC--CC--cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~--~g--~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.|.+++.++. .+.+. ++ ..+.+|.+++|+|..|+.
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 889999999999999976543 23332 45 379999999999988763
No 266
>PRK08275 putative oxidoreductase; Provisional
Probab=98.44 E-value=9.5e-06 Score=75.54 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++.||+++.++.++++..++++++.+|.. .+|+ .+.++.||+|||-
T Consensus 136 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (554)
T PRK08275 136 GHDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGA 198 (554)
T ss_pred hHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence 34567778888888999999999999987643677777763 3564 4789999999985
No 267
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.44 E-value=9.1e-07 Score=79.68 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=31.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
..+||+|||+|.|||+||..+. .|. +|+|+||....
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~---~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDL---KILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCC---CEEEEecCCCC
Confidence 3579999999999999999984 676 99999997653
No 268
>PRK07538 hypothetical protein; Provisional
Probab=98.43 E-value=6.7e-07 Score=80.31 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.||+|||||++||++|..|++.|+ +|+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence 389999999999999999999998 9999999865
No 269
>PRK06847 hypothetical protein; Provisional
Probab=98.42 E-value=5.7e-06 Score=73.28 Aligned_cols=97 Identities=26% Similarity=0.326 Sum_probs=76.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 244 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------------------------------------------ 244 (306)
..+|+|||+|..|+-+|..|++.+.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999987653110
Q ss_pred ---cc----------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 245 ---RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 245 ---~~----------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.. ..+.+.+.+.+.+++.|++++.+++|++++.. ++.+ .+.+.+|+++.+|.||.|+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDGV-TVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEE-EEEEcCCCEEEcCEEEECcCC
Confidence 00 01244566777777789999999999999864 4444 578888989999999999985
No 270
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=1.3e-06 Score=79.69 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
.+++++|||||+.|+.+|..|.+.|. +|+++|+.+... .+ ++ .+....+.+.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il-------~~--~d----------------~~~~~~l~~~ 224 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC-------PG--TD----------------TETAKTLQKA 224 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC-------CC--CC----------------HHHHHHHHHH
Confidence 35799999999999999999999997 999999865421 00 00 0001345667
Q ss_pred HhhcCeEEEeCCcEEEEeCCCC--EEEcC---C--CcEEecCcEEEeeCCCCcc
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---S--GKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~--~v~~~---~--g~~~~~~~lila~G~~~~~ 176 (306)
+++.+++++.++.+.++...+. .+.+. + +..+.+|.+++|+|..|+.
T Consensus 225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 7888999999999999976433 23322 2 3479999999999988763
No 271
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.42 E-value=6.9e-06 Score=68.58 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------ccCH
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP 249 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------~~~~ 249 (306)
.-.|+|||+|+.|+-.|..+++.+.+|.++.+...+... ....
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 346999999999999999999999999999987553210 0123
Q ss_pred HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC-----------CCEEecCEEEEecCC
Q 021871 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-----------GSTIDADTVILLPYD 305 (306)
Q Consensus 250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-----------G~~i~~d~vv~a~g~ 305 (306)
.+...+.+.+.+.|++++.++.|.++...+++++.++.... ...+.++.||.|||.
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 45566777888899999999999998764454666665431 236899999999995
No 272
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.41 E-value=1.1e-06 Score=84.74 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++++|||||+.|+.+|..|++.|. +|+|+++.+.. +. ..+ + . .....+...+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~---~Vtvv~~~~~l-l~------~~l-d--~--------------~~~~~l~~~l 192 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGM---DVSVIHHAPGL-MA------KQL-D--Q--------------TAGRLLQREL 192 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEccCCch-hh------hhc-C--H--------------HHHHHHHHHH
Confidence 4689999999999999999999998 99999976542 00 000 0 0 0013456677
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.|+++++++.+.++..+.. .+.+.+|..+.+|.+|+|+|..|+.
T Consensus 193 ~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 193 EQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPND 240 (785)
T ss_pred HHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCc
Confidence 889999999999988876543 5777888899999999999988763
No 273
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.41 E-value=1.1e-06 Score=82.64 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=33.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHc-CCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~-g~~~~~V~vie~~~~ 88 (306)
.+.+||+||||||+||++|..|++. |+ +|+|+|+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence 3468999999999999999999995 98 9999999865
No 274
>PRK14694 putative mercuric reductase; Provisional
Probab=98.40 E-value=1.5e-06 Score=79.35 Aligned_cols=96 Identities=24% Similarity=0.383 Sum_probs=71.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+++|||+|+.|+.+|..|++.|. +|+++++.... . ..+ + +....+.+.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l--~----------~~~------~--------~~~~~l~~~l 228 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVL--S----------QED------P--------AVGEAIEAAF 228 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCC--C----------CCC------H--------HHHHHHHHHH
Confidence 4699999999999999999999997 99999864221 0 000 0 0013456678
Q ss_pred hhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.|++++.++.+.+++.++.. +.+++ ..+.+|.+++|+|..|+.
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 8899999999999998865543 33333 469999999999998874
No 275
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=1.6e-06 Score=80.96 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
..+||+|||||.|||+||.++++.|. ..+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 35799999999999999999998862 339999999765
No 276
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.39 E-value=1.7e-05 Score=74.47 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEE---eCCCC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~---~~~G~--~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++.+ |+++.++.|..+.. +++++.+|. ..+|+ .+.++.||+|||-
T Consensus 131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 3455666767777765 99999999999875 456666664 34554 5889999999994
No 277
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.39 E-value=9e-07 Score=76.72 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP 303 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~ 303 (306)
...+...+.+.+++.|.+|.+++.|.+|.. ++|++.+|.+.+|+++.+..||..+
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNA 317 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNA 317 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCC
Confidence 456788899999999999999999999997 6799999999999999998888644
No 278
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.39 E-value=5.1e-07 Score=78.71 Aligned_cols=116 Identities=21% Similarity=0.339 Sum_probs=62.3
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEec-cCCCCCCC--CCcc---c-----------cccccC---CCCCCCCC-
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVS-KEAYAPYE--RPAL---T-----------KGYLFP---LDKKPARL- 111 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie-~~~~~~~~--~~~~---~-----------~~~~~~---~~~~~~~~- 111 (306)
||+|||||+||+.||+.+++.|. +|.++. +.+....- .+.+ . +|.+.. ......++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~---~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGA---KVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 79999999999999999999998 899993 33332210 0110 0 011100 00000000
Q ss_pred -----CCcccccCCCCCc----CChhHHhh-cCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCC
Q 021871 112 -----PGFHTCVGSGGER----QTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC 172 (306)
Q Consensus 112 -----~~~~~~~~~~~~~----~~~~~~~~-~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~ 172 (306)
|.....+...... .+.+.++. .++++. +.+|.++..++. .|.+.+|..+.++.+|+|||.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0000000000011 22223333 478886 558999977554 477889999999999999997
No 279
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.39 E-value=1.8e-06 Score=78.76 Aligned_cols=98 Identities=17% Similarity=0.283 Sum_probs=72.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHc---CCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871 51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (306)
+.+++|||||+.|+.+|..+... |. +|+++++.+...-. ++ . +....+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~---~Vtli~~~~~il~~---------~d-----~-----------~~~~~l~ 238 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGG---KVTLCYRNNMILRG---------FD-----S-----------TLRKELT 238 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCC---eEEEEecCCccccc---------cC-----H-----------HHHHHHH
Confidence 47899999999999999877665 65 99999987653100 00 0 0023456
Q ss_pred hHHhhcCeEEEeCCcEEEEeCCC---CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 128 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 128 ~~~~~~~v~~~~~~~v~~v~~~~---~~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
..+++.+++++.++.+.++.... ..+.+.++..+.+|.+++|+|..|+.
T Consensus 239 ~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 239 KQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 67888999999999999987532 24566677789999999999988763
No 280
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.38 E-value=9e-06 Score=74.54 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCC-C--CEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G--~~i~~d~vv~a~g~ 305 (306)
...+...+.+.+++ .||+++.++.++++.. +++.+.++...+ + ..+.++.||+|||-
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 35677778888877 6999999999999985 466666666554 3 36889999999984
No 281
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.37 E-value=1.6e-06 Score=83.86 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++++|||||+.|+.+|..|++.|. +|+|++..+...-. .+ + ......+.+.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~---~VtvVe~~~~ll~~-------~l---d--------------~~~~~~l~~~L 197 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGV---ETHVIEFAPMLMAE-------QL---D--------------QMGGEQLRRKI 197 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeccccchhh-------hc---C--------------HHHHHHHHHHH
Confidence 4689999999999999999999998 89999976542000 00 0 00013456778
Q ss_pred hhcCeEEEeCCcEEEEeCCC----CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~----~~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.|++++++..+.++..++ ..+.+.+|+.+.+|.+++|+|..|+.
T Consensus 198 ~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 198 ESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 88999999999999886532 24677888899999999999988874
No 282
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.37 E-value=2.1e-06 Score=79.60 Aligned_cols=36 Identities=33% Similarity=0.413 Sum_probs=33.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
..+||+|||+|.|||+||..+++.|. +|+|+||...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence 45899999999999999999999997 9999999765
No 283
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.36 E-value=2.3e-06 Score=77.50 Aligned_cols=97 Identities=18% Similarity=0.318 Sum_probs=72.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+++|||||+.|+.+|..|.+.|. +|+++++.+... +... . +....+.+.+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l------------~~~~--~-----------~~~~~l~~~l 209 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL------------PRED--R-----------DIADNIATIL 209 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC------------CCcC--H-----------HHHHHHHHHH
Confidence 4689999999999999999999997 999999865421 0000 0 0013456678
Q ss_pred hhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.++++++++++.+++.++.. +..+++ .+.+|.+++|+|..|+.
T Consensus 210 ~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 210 RDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 8899999999999999765443 333444 58999999999988874
No 284
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.35 E-value=1.7e-06 Score=75.79 Aligned_cols=99 Identities=22% Similarity=0.354 Sum_probs=79.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
...|++||+|..|+.+|..|...++ +|+++++++.. +.+ ++. ....+.+..++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~~-------lf~----------------~~i~~~~~~y~ 265 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LPR-------LFG----------------PSIGQFYEDYY 265 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hhh-------hhh----------------HHHHHHHHHHH
Confidence 5689999999999999999999988 99999998763 110 111 11135677889
Q ss_pred hhcCeEEEeCCcEEEEeCCC--C--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~--~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.+.+...+. + .+.+.+++.+.+|.|++.+|..|..
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 99999999999988887654 2 5788899999999999999999874
No 285
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.34 E-value=1.7e-05 Score=65.96 Aligned_cols=99 Identities=19% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------ccCH
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP 249 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-------------------------------------~~~~ 249 (306)
.-.|+|||+|+.|+-.|..+++.+.+|.++.++..+... ....
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 456999999999999999999999999999987653210 0123
Q ss_pred HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC-cEEEEEeCC-----------CCEEecCEEEEecCC
Q 021871 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTVILLPYD 305 (306)
Q Consensus 250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~v~~v~~~~-----------G~~i~~d~vv~a~g~ 305 (306)
.+.+.+.+.+.+.|++++.++.|..+...+++ ++.+|.+.. ...++++.||.|||.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 45567777888899999999999998864442 577777642 236899999999995
No 286
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.33 E-value=3.2e-06 Score=76.72 Aligned_cols=97 Identities=26% Similarity=0.358 Sum_probs=70.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++++|||||+.|+.+|..|.+.|. +|+++++.+... . . .+ .++ ...+.. +
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll-~-------~-~d-----~~~-----------~~~l~~-~ 219 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL-R-------H-LD-----EDI-----------SDRFTE-I 219 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc-c-------c-cC-----HHH-----------HHHHHH-H
Confidence 4799999999999999999999997 999999875421 0 0 00 000 012222 2
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
.+.+++++.++++.+++.++. .+.+.+++.+++|.+++|+|..|+.
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 345799999999999976443 4555677789999999999988764
No 287
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.33 E-value=3.2e-06 Score=77.63 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=72.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+.+++|||||+.|+.+|..|++.|. +|+++++... +. .. + . +....+...+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~--l~--~~------d--~--------------~~~~~l~~~l 232 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIP--LR--GF------D--R--------------QCSEKVVEYM 232 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCcc--cc--cC------C--H--------------HHHHHHHHHH
Confidence 4589999999999999999999997 9999986321 11 00 0 0 0013456678
Q ss_pred hhcCeEEEeCCcEEEEeCCC--CEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~--~~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.+.++.... ..+.+.+++.+.+|.+++|+|..|+.
T Consensus 233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 88999999998888776533 24566677789999999999988774
No 288
>PTZ00058 glutathione reductase; Provisional
Probab=98.32 E-value=3.5e-06 Score=77.97 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=72.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+|+|||||+.|+.+|..|.+.|. +|+++++.+... . . ++ . +....+.+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il-~--~------~d--~--------------~i~~~l~~~L 288 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL-R--K------FD--E--------------TIINELENDM 288 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc-c--c------CC--H--------------HHHHHHHHHH
Confidence 5799999999999999999999997 999999875421 0 0 00 0 0013455677
Q ss_pred hhcCeEEEeCCcEEEEeCCCC---EEEcCC-CcEEecCcEEEeeCCCCc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~---~v~~~~-g~~~~~~~lila~G~~~~ 175 (306)
++.|++++.+..+.+++..+. .+...+ +..+.+|.+++|+|..|+
T Consensus 289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 889999999999999875432 233333 457999999999998776
No 289
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.30 E-value=7.2e-06 Score=74.40 Aligned_cols=95 Identities=19% Similarity=0.342 Sum_probs=68.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccc------cccc----C--HHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF----T--PSLAQRYEQLYQQNGVKFVKGASIKN 274 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~------~~~~----~--~~~~~~~~~~~~~~gv~i~~~~~v~~ 274 (306)
+|+|||+|..|+.+|..|++.+ .+|+++.+.+.+. +... . ..+.....+.+++.|++++.++.|++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 6999999999999999998875 3799999987641 1100 1 11223334567888999999999999
Q ss_pred EEeCCCCcEEEEEe-CCCCEEe--cCEEEEecCC
Q 021871 275 LEAGSDGRVAAVKL-EDGSTID--ADTVILLPYD 305 (306)
Q Consensus 275 i~~~~~~~v~~v~~-~~G~~i~--~d~vv~a~g~ 305 (306)
|+. ++..+ .+.. .+|+.++ +|.+|+|||.
T Consensus 82 id~-~~~~v-~~~~~~~~~~~~~~yd~lviAtG~ 113 (444)
T PRK09564 82 VDA-KNKTI-TVKNLKTGSIFNDTYDKLMIATGA 113 (444)
T ss_pred EEC-CCCEE-EEEECCCCCEEEecCCEEEECCCC
Confidence 986 34333 3433 2355666 9999999996
No 290
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.30 E-value=1.4e-05 Score=68.09 Aligned_cols=95 Identities=22% Similarity=0.253 Sum_probs=72.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------------------c----
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R---- 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~---------------------------------------~---- 245 (306)
.|+|||+|..|+-+|..|++.+.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998854210 0
Q ss_pred ------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCCEEecCEEEEecCC
Q 021871 246 ------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTVILLPYD 305 (306)
Q Consensus 246 ------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~~i~~d~vv~a~g~ 305 (306)
.....+.+.+.+.+++.|++++.+++++++...++ .+ .+.+. ++.++.+|.||.|+|.
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~ 146 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGS 146 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCc
Confidence 01234566778888889999999999999886444 33 34333 3457999999999985
No 291
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=5.6e-06 Score=73.07 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=68.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCccccc-cc---------CHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871 209 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQR-LF---------TPSLAQRYEQLYQQNGVKFVKGASIKNL 275 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~gv~i~~~~~v~~i 275 (306)
+|+|||+|..|+.+|..+.+. ..+|+++.+.+...-. .+ ..++...+.+.+++.|++++.+ .|++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 4689999988764211 00 1223334566677789999886 79999
Q ss_pred EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+.. + + .|.+.+|+++.+|.+|+|||.
T Consensus 80 d~~-~-~--~V~~~~g~~~~yD~LviAtG~ 105 (364)
T TIGR03169 80 DPD-R-R--KVLLANRPPLSYDVLSLDVGS 105 (364)
T ss_pred ecc-c-C--EEEECCCCcccccEEEEccCC
Confidence 852 3 3 477888889999999999995
No 292
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.28 E-value=4.5e-06 Score=67.04 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=68.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--ccC-----------HHHH--H--HHHHHHHHcCCEEEcCce
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFT-----------PSLA--Q--RYEQLYQQNGVKFVKGAS 271 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--~~~-----------~~~~--~--~~~~~~~~~gv~i~~~~~ 271 (306)
+|+|||+|+.|+.+|..|+..+.+++++.+.+..... ... .... + .+.+.+++.+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 5899999999999999999999999999776542110 000 0011 1 444556788999999999
Q ss_pred EEEEEeCCCCc-------EEEEEeCCCCEEecCEEEEecCC
Q 021871 272 IKNLEAGSDGR-------VAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 272 v~~i~~~~~~~-------v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+.+++.. .+. +......++..+.+|.+|+|||.
T Consensus 81 v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 81 VVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp EEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ccccccc-ccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 9999873 442 11224455668999999999994
No 293
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.28 E-value=8.2e-06 Score=73.47 Aligned_cols=97 Identities=19% Similarity=0.286 Sum_probs=69.2
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKNL 275 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~gv~i~~~~~v~~i 275 (306)
..++|+|||+|..|+.+|..|.....+|+++.+.+.+.-... ...+...+.+.++..+++++.+ +|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence 356899999999999999999766678999998877532111 1223334556666778888765 89999
Q ss_pred EeCCCCcEEEEEe--------CCCCEEecCEEEEecCC
Q 021871 276 EAGSDGRVAAVKL--------EDGSTIDADTVILLPYD 305 (306)
Q Consensus 276 ~~~~~~~v~~v~~--------~~G~~i~~d~vv~a~g~ 305 (306)
+. ++..+ .+.. .+|.++++|.+|+|||.
T Consensus 88 d~-~~~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs 123 (424)
T PTZ00318 88 DF-EEKRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGA 123 (424)
T ss_pred Ec-CCCEE-EEecccccccccCCceEecCCEEEECCCc
Confidence 96 34433 2311 45668999999999996
No 294
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.27 E-value=2e-05 Score=72.58 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCC-CC--EEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~-G~--~i~~d~vv~a~g~ 305 (306)
...+.+.+.+.++++ ||+++.++.++++.. +++++.++...+ ++ .+.++.||+|||-
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCCC
Confidence 446777777777765 999999999999875 467777776643 32 5889999999984
No 295
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.27 E-value=1.8e-05 Score=71.57 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCC-CCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDG-STIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~v~~v~~~~G-~~i~~d~vv~a~g~ 305 (306)
...+.+.+.+.+++.|++++++++|+++...+ ++.+++|...++ ..+.++.||+|||-
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 45677888888999999999999999988643 577777776443 47899999999983
No 296
>PRK13748 putative mercuric reductase; Provisional
Probab=98.27 E-value=3.9e-06 Score=78.44 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=71.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+++++|||||+.|+.+|..|.+.|. +|+++++.... . ..+ .. ....+.+.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l--~----------~~d---~~-----------~~~~l~~~l 320 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLF--F----------RED---PA-----------IGEAVTAAF 320 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCccc--c----------ccC---HH-----------HHHHHHHHH
Confidence 4689999999999999999999997 99999974221 0 000 00 013456778
Q ss_pred hhcCeEEEeCCcEEEEeCCCCE--EEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~--v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.+.++..++.. +.++++ .+.+|.+++|+|..|+.
T Consensus 321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 8899999999999988754433 333444 69999999999988874
No 297
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.26 E-value=4.5e-05 Score=71.56 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=40.2
Q ss_pred HHHHHHHHHHH----HcCCEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871 250 SLAQRYEQLYQ----QNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD 305 (306)
Q Consensus 250 ~~~~~~~~~~~----~~gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~ 305 (306)
.+...+.+.++ +.||+++.+++++++..++++++.+|... +|+ .+.++.||+|||-
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 34444444443 34899999999999875456688888764 454 5789999999984
No 298
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=70.69 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=40.8
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCC---CCCcEEEeccCCCCCCCCCccccccccCCC
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEAYAPYERPALTKGYLFPLD 105 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~---~~~~V~vie~~~~~~~~~~~~~~~~~~~~~ 105 (306)
+..+++|+|||||+.|..+|++|.+++- ...+|+++|+....+- ..+...|++..|.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g-aSGkasgfLa~wc 66 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG-ASGKASGFLAKWC 66 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc-cccccchhhHhhh
Confidence 4456899999999999999999999872 1238999999866432 2344445554433
No 299
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.26 E-value=3.9e-06 Score=75.15 Aligned_cols=98 Identities=18% Similarity=0.322 Sum_probs=77.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+++|||+|+.||.+|..|+++|+ +|+++|+.+...-. ++. +. ....+...+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~--------~~~--------~~--------~~~~~~~~l 188 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ--------LLD--------PE--------VAEELAELL 188 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh--------hhh--------HH--------HHHHHHHHH
Confidence 4799999999999999999999998 99999988664211 100 00 024577788
Q ss_pred hhcCeEEEeCCcEEEEeCCCCE-----EEcCCCcEEecCcEEEeeCCCCc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS 175 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~-----v~~~~g~~~~~~~lila~G~~~~ 175 (306)
++.+++++++..+..++..... +...++..+.+|.+++++|..|+
T Consensus 189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 8899999999999999986542 46667778999999999999885
No 300
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.25 E-value=5.6e-06 Score=75.66 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+.+++|||||+.|+.+|..|++.|. +|+++++. .. +. . ++ . +....+.+.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~-~~-l~--~------~d--~--------------~~~~~l~~~L 230 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRS-IL-LR--G------FD--Q--------------DCANKVGEHM 230 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEec-cc-cc--c------cC--H--------------HHHHHHHHHH
Confidence 4589999999999999999999997 99999863 21 10 0 00 0 0013456678
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCC---cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g---~~~~~~~lila~G~~~~~ 176 (306)
++.++++++++.+.++...+. .+.+.++ ..+.+|.+++|+|..|+.
T Consensus 231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 889999999988888765433 3444444 379999999999988774
No 301
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=5e-06 Score=75.79 Aligned_cols=98 Identities=12% Similarity=0.205 Sum_probs=71.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
.+++++|||||+.|+.+|..|.+.|. +|+++++.+... . . ++ .+....+.+.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l-~-------~-~d----------------~~~~~~~~~~ 219 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL-P-------L-ED----------------PEVSKQAQKI 219 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC-c-------c-hh----------------HHHHHHHHHH
Confidence 35799999999999999999999997 899999876531 0 0 00 0001345566
Q ss_pred HhhcCeEEEeCCcEEEEeCCCC-EEE--cCC--CcEEecCcEEEeeCCCCcc
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQ-TLI--TNS--GKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~-~v~--~~~--g~~~~~~~lila~G~~~~~ 176 (306)
+++. +++++++++.+++..+. .+. ..+ +..+.+|.+++|+|..|+.
T Consensus 220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 7777 99999999999976543 333 222 3479999999999988774
No 302
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.24 E-value=7.5e-06 Score=75.38 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
+||+|||||++|+.+|..+++.|. +|+++|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---CEEEEeccc
Confidence 599999999999999999999998 999999864
No 303
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.24 E-value=5.5e-05 Score=76.21 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
..+||||||+|.||++||..+++.|. +|+|+||....
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCCC
Confidence 45899999999999999999999998 99999998654
No 304
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=6.2e-06 Score=75.26 Aligned_cols=97 Identities=13% Similarity=0.236 Sum_probs=69.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
..+++|||||+.|+.+|..|.+.|. +|+++++.+...- ..+ . +....+...+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il~-----------~~d---~-----------~~~~~~~~~l 225 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVIP-----------AAD---K-----------DIVKVFTKRI 225 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCCC-----------cCC---H-----------HHHHHHHHHH
Confidence 4699999999999999999999998 9999998765310 000 0 0012344556
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCC--C--cEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~--g--~~~~~~~lila~G~~~~~ 176 (306)
++. +.++.++.+..+...+. .+.+.+ + ..+++|.+++|+|..|+.
T Consensus 226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 666 99999999998875433 343333 2 369999999999988774
No 305
>PRK14727 putative mercuric reductase; Provisional
Probab=98.23 E-value=4.8e-06 Score=76.20 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=70.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+++++|||||+.|+.+|..|.+.|. +|+++++.... . ..+. .....+.+.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l--~----------~~d~--------------~~~~~l~~~L 238 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLL--F----------REDP--------------LLGETLTACF 238 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCC--C----------cchH--------------HHHHHHHHHH
Confidence 4689999999999999999999997 99999864211 0 0000 0013456677
Q ss_pred hhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.+++++.++.+..+...+. .+...++ .+.+|.+++|+|..|+.
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 889999999999988875443 3444444 58999999999998864
No 306
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.22 E-value=9.4e-06 Score=71.23 Aligned_cols=94 Identities=24% Similarity=0.428 Sum_probs=74.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccccc----------ccCHHHHHHHHHHHHHcC-CEEEcCceEE
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQNG-VKFVKGASIK 273 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g-v~i~~~~~v~ 273 (306)
.++++|+|+|..|+..+..|.+.. .+++++.+.+...-. .....+...+.+.++..+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 478999999999999999999875 889999999875421 112345556788888665 999988 799
Q ss_pred EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+|+. +++ .|.+.+++.+.+|.+|+|+|.
T Consensus 82 ~ID~--~~k--~V~~~~~~~i~YD~LVvalGs 109 (405)
T COG1252 82 DIDR--DAK--KVTLADLGEISYDYLVVALGS 109 (405)
T ss_pred EEcc--cCC--EEEeCCCccccccEEEEecCC
Confidence 9995 333 477888778999999999985
No 307
>PLN02463 lycopene beta cyclase
Probab=98.21 E-value=2.5e-05 Score=70.41 Aligned_cols=95 Identities=26% Similarity=0.299 Sum_probs=72.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-cc-----------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QR----------------------------------------- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-~~----------------------------------------- 245 (306)
-.|+|||+|+.|.-+|..+++.+.+|.++.+.+... +.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 368999999999999999999999999998864211 00
Q ss_pred --ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 246 --LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 246 --~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.....+.+.+.+.+.+.|++++ .++|++|+.. ++.+ .|.+++|+++.+|.||.|+|.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~~-~V~~~dG~~i~A~lVI~AdG~ 167 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHE-ESKS-LVVCDDGVKIQASLVLDATGF 167 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCeE-EEEECCCCEEEcCEEEECcCC
Confidence 0012334556666677899997 4689999974 4443 688899989999999999985
No 308
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.20 E-value=2e-05 Score=72.51 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=70.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc-----------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------------- 246 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~----------------------------------------- 246 (306)
++|+|||+|.+|+-.+..+.+.|.+++++++.+.+.+-.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999999999999999987654210
Q ss_pred cCHHHHHHHHHHHHHcCC--EEEcCceEEEEEeCCC----CcEEEEEeCCCC---EEecCEEEEecCC
Q 021871 247 FTPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSD----GRVAAVKLEDGS---TIDADTVILLPYD 305 (306)
Q Consensus 247 ~~~~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~----~~v~~v~~~~G~---~i~~d~vv~a~g~ 305 (306)
...++.+.++..+++.+. .|.++++|++++..++ +++ .|++.++. +..+|.||+|||.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~ 148 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGH 148 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-S
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCC
Confidence 013567777777777665 5889999999986443 566 46665542 3568999999996
No 309
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.20 E-value=6.2e-06 Score=72.41 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=69.3
Q ss_pred hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276 (306)
Q Consensus 205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 276 (306)
..+++|+|||+|+.|++.|..+++.+.+++++.+.+.+.+.. .+........+.+.+.|++++.++.+..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~ 95 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE 95 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence 357899999999999999999999999999999987764321 122333445566777799999998886653
Q ss_pred e---CCCCcEE--EEEeCCCCEEecCEEEEecCC
Q 021871 277 A---GSDGRVA--AVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 277 ~---~~~~~v~--~v~~~~G~~i~~d~vv~a~g~ 305 (306)
. ..++... .+..+ +..+.+|.||+|||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs 128 (352)
T PRK12770 96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGT 128 (352)
T ss_pred ccccccccccccccCCHH-HHHhhCCEEEEEeCC
Confidence 2 1111110 01112 224789999999995
No 310
>PLN02546 glutathione reductase
Probab=98.19 E-value=9.6e-06 Score=75.11 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (306)
...+|+|||||+.|+.+|..|.+.+. +|+++++.+...-. ++ .+....+...
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il~~---------~d----------------~~~~~~l~~~ 302 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVLRG---------FD----------------EEVRDFVAEQ 302 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccccc---------cC----------------HHHHHHHHHH
Confidence 35699999999999999999999987 99999986542100 00 0001345566
Q ss_pred HhhcCeEEEeCCcEEEEeCC-CC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 130 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~-~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
+++.|++++.++.+.++... +. .+.+.++....+|.+++|+|..++.
T Consensus 303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 78899999999999888642 22 3344444445589999999988774
No 311
>PRK06834 hypothetical protein; Provisional
Probab=98.16 E-value=5.1e-05 Score=69.52 Aligned_cols=96 Identities=22% Similarity=0.304 Sum_probs=73.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---cc---------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QR--------------------------------------- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~---~~--------------------------------------- 245 (306)
..|+|||+|++|+-+|..|++.|.+|+++++.+... ++
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 469999999999999999999999999998765311 00
Q ss_pred --cc-----------CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 246 --LF-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 246 --~~-----------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.. ...+.+.+.+.+++.|++++.+++|++++.+++ .+ .+++.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~-~v-~v~~~~g~~i~a~~vVgADG~ 154 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDT-GV-DVELSDGRTLRAQYLVGCDGG 154 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-eE-EEEECCCCEEEeCEEEEecCC
Confidence 00 012334455667778999999999999997444 44 477778888999999999985
No 312
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.14 E-value=1.3e-05 Score=74.93 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+||+|||||.|||+||..+++.+. ..+|+|+||...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~~ 40 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVYP 40 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence 4799999999999999999998852 339999999754
No 313
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.12 E-value=1.4e-05 Score=75.30 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=69.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhH-
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW- 129 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (306)
..+|+|||||+.|+.+|..|.+.|. +|+++++.+...- . ++ . +....+...
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll~--------~-~d--~--------------eis~~l~~~l 363 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLLP--------L-LD--A--------------DVAKYFERVF 363 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCcccc--------c-CC--H--------------HHHHHHHHHH
Confidence 4689999999999999999999997 9999998765310 0 00 0 001223333
Q ss_pred HhhcCeEEEeCCcEEEEeCCCC----EEEcC-------CC--------cEEecCcEEEeeCCCCcc
Q 021871 130 YKEKGIEMIYQDPVTSIDIEKQ----TLITN-------SG--------KLLKYGSLIVATGCTASR 176 (306)
Q Consensus 130 ~~~~~v~~~~~~~v~~v~~~~~----~v~~~-------~g--------~~~~~~~lila~G~~~~~ 176 (306)
+++.+++++.++.|.++..... .+.+. ++ +.+++|.+++|+|..|+.
T Consensus 364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 3568899999999999876432 22221 11 269999999999988874
No 314
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.11 E-value=0.00012 Score=64.55 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeC---CC--CEEecCEEEEecC
Q 021871 249 PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTVILLPY 304 (306)
Q Consensus 249 ~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~---~G--~~i~~d~vv~a~g 304 (306)
..+.+.+.+.+++. |++++++++|+.|+..+||.+ .|.+. +| ..+.++.|++..|
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCc
Confidence 34566677777777 999999999999999888866 35542 23 4799999999876
No 315
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.11 E-value=6.8e-05 Score=67.63 Aligned_cols=95 Identities=24% Similarity=0.328 Sum_probs=71.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc------------------cc-----c-------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR-----L------------------- 246 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------------------~~-----~------------------- 246 (306)
.|+|||+|+.|.-+|..|++.|.+|.++++.+... +. .
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAM 86 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCce
Confidence 68999999999999999999999999998764321 00 0
Q ss_pred -------------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 247 -------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 247 -------------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
....+...+.+.+++.|++++.+++|+++.. +++.+..+. .+|+++.+|.||.|+|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~ 162 (428)
T PRK10157 87 TMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGV 162 (428)
T ss_pred eeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCC
Confidence 0012234566777788999999999999886 456554555 45668999999999985
No 316
>PRK08244 hypothetical protein; Provisional
Probab=98.09 E-value=6.9e-05 Score=68.96 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=72.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------c-------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------- 246 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~----------------------------------~------- 246 (306)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36899999999999999999999999999886542100 0
Q ss_pred --------------c-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871 247 --------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPYD 305 (306)
Q Consensus 247 --------------~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~ 305 (306)
. ...+.+.+.+.+++.|++++.++++++++..+++..+.+...+| +++++|.||-|.|.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~ 157 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGA 157 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCC
Confidence 0 01344556666777899999999999998755544333444456 47999999999985
No 317
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.09 E-value=2.7e-05 Score=75.82 Aligned_cols=88 Identities=25% Similarity=0.225 Sum_probs=66.1
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+.... .+.++.....+.+++.||+++.++.+ .+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l 616 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV 616 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence 46789999999999999999999999999999876543211 23344555556778889999999877 2332
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.+.....+|.||+|||.
T Consensus 617 -----------e~L~~~gYDaVILATGA 633 (1019)
T PRK09853 617 -----------EQLKNEGYDYVVVAIGA 633 (1019)
T ss_pred -----------hhheeccCCEEEECcCC
Confidence 12224558999999996
No 318
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.09 E-value=8.1e-05 Score=66.61 Aligned_cols=95 Identities=24% Similarity=0.352 Sum_probs=72.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcccc------------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ------------------------------------------ 244 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~------------------------------------------ 244 (306)
+|+|||+|+.|+-+|..|++.+ .+|+++++.+...+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 78888887643100
Q ss_pred ----------c--------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEE
Q 021871 245 ----------R--------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300 (306)
Q Consensus 245 ----------~--------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv 300 (306)
. .....+.+.+.+.+++.|++++.+++|++++.+ ++.+ .|++++|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEE
Confidence 0 001234556777777889999999999999864 4444 5788888899999999
Q ss_pred EecCC
Q 021871 301 LLPYD 305 (306)
Q Consensus 301 ~a~g~ 305 (306)
.|.|.
T Consensus 161 ~AdG~ 165 (403)
T PRK07333 161 AADGA 165 (403)
T ss_pred EcCCC
Confidence 99985
No 319
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.08 E-value=5e-06 Score=72.95 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=32.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
+||+|||||++|+++|.+|++.|. +|+|+|+++..+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC
Confidence 699999999999999999999987 999999976543
No 320
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.07 E-value=1.7e-05 Score=77.68 Aligned_cols=90 Identities=18% Similarity=0.082 Sum_probs=70.1
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|++.|.+|+++.+.+.+..- .++..+.+...+.+++.||++++++.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 4789999999999999999999999999999998765431 12445666667788889999999875421
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.+.+++.....+|.||+|||.
T Consensus 382 -------dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 382 -------TATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred -------EEeHHHhccccCCEEEEeCCC
Confidence 244555545679999999995
No 321
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.07 E-value=6e-05 Score=63.49 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=39.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCC-CCcEEEeccCCCCCCCCCccccccccC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFP 103 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~-~~~V~vie~~~~~~~~~~~~~~~~~~~ 103 (306)
+.||+|||||-.|.+.|+-|.++-.. ..+|+|+|+++...-....+.-|.+-.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~Q 139 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQ 139 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceee
Confidence 67999999999999999999876432 259999999987654444444444433
No 322
>PRK07236 hypothetical protein; Provisional
Probab=98.07 E-value=4.9e-05 Score=67.68 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=70.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-----ccCHHHHHH---------------------------
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQR--------------------------- 254 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~--------------------------- 254 (306)
..+|+|||+|..|+.+|..|++.+.+|+++++.+..... .+.+...+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 568999999999999999999999999999988643211 012222111
Q ss_pred ----------------HHHHHHH--cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 255 ----------------YEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 255 ----------------~~~~~~~--~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+.+.+.+ .+++++.+++|++++.+ ++.+ .|.+++|+++.+|.||.|-|.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD-GDRV-TARFADGRRETADLLVGADGG 152 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec-CCeE-EEEECCCCEEEeCEEEECCCC
Confidence 1122221 14679999999999874 4444 588899999999999999774
No 323
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.07 E-value=1.9e-05 Score=73.74 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+||+|||||.|||.||..+++.+ +..+|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g-~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEAN-PHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhC-CCCcEEEEEccCC
Confidence 479999999999999999999875 2339999999765
No 324
>PRK10262 thioredoxin reductase; Provisional
Probab=98.07 E-value=0.0001 Score=63.86 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=67.9
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC---Cccc--------cc----ccCHHHHHHHHHHHHHcCCEEEcCc
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---NHLL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGA 270 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~---~~~~--------~~----~~~~~~~~~~~~~~~~~gv~i~~~~ 270 (306)
..++|+|||+|+.|+..|..+.+.+.++.++... ..+. +. ...+.+.+.+.+.....++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 3578999999999999999999999888877532 1110 11 112345666777777788888776
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 271 SIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 271 ~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.|..|+. .++.+ .+..+++ .+.+|.||+|||.
T Consensus 84 ~v~~v~~-~~~~~-~v~~~~~-~~~~d~vilAtG~ 115 (321)
T PRK10262 84 HINKVDL-QNRPF-RLTGDSG-EYTCDALIIATGA 115 (321)
T ss_pred EEEEEEe-cCCeE-EEEecCC-EEEECEEEECCCC
Confidence 5777875 34443 3554444 7899999999996
No 325
>PLN02568 polyamine oxidase
Probab=98.07 E-value=5.7e-06 Score=76.35 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=35.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCC--CCCcEEEeccCCCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAP 90 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~--~~~~V~vie~~~~~~ 90 (306)
++.+||+|||||++||++|++|++.|. ...+|+|+|++...+
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 456799999999999999999999871 123899999988764
No 326
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.06 E-value=1.6e-05 Score=72.44 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=68.6
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+... ..+..+.....+.+++.|++++.++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 4678999999999999999999999999999988765321 13556677777888889999999987621
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.+.+.++ .+.+|.||+|||.
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa 235 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGA 235 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCC
Confidence 1223333 3779999999995
No 327
>PLN02529 lysine-specific histone demethylase 1
Probab=98.05 E-value=7.3e-06 Score=77.65 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=44.4
Q ss_pred cCCccCccccccccceeeecccCCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 26 RIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
.+.|..+|...+. .++....++|+|||||++||+||+.|+++|+ +|+|+|+++..+
T Consensus 141 ~inc~vnp~~~~~------~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 196 (738)
T PLN02529 141 YINFGVSPSFASP------IPEEGTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG 196 (738)
T ss_pred CcceeecccccCC------CCcccCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence 4568888875441 1112456899999999999999999999999 999999987654
No 328
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.05 E-value=6.5e-05 Score=69.42 Aligned_cols=95 Identities=24% Similarity=0.339 Sum_probs=70.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC-cccc-----------------------c-------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ-----------------------R------------------- 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~-~~~~-----------------------~------------------- 245 (306)
.|+|||+|..|++.|..+++.|.+|.++.+.. .+.. .
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 58999999999999999999999999998873 1100 0
Q ss_pred ----------ccCH-HHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 246 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 246 ----------~~~~-~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.++. .+...+.+.+.+. |++++. ..|..+.. +++.+.+|.+.+|..+.|+.||+|||.
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 0000 1223344555544 888864 46888875 567788999999999999999999993
No 329
>PLN02985 squalene monooxygenase
Probab=98.02 E-value=6.9e-06 Score=75.52 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=33.7
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
....+||+|||||++|+++|..|++.|+ +|+|+|+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcC
Confidence 3456899999999999999999999998 999999975
No 330
>PRK06184 hypothetical protein; Provisional
Probab=98.01 E-value=0.00012 Score=67.56 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=71.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------c-c
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R-L 246 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------------------~-~ 246 (306)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 4699999999999999999999999999988654310 0 0
Q ss_pred ----------------------c-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCCEEecCEEE
Q 021871 247 ----------------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTVI 300 (306)
Q Consensus 247 ----------------------~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~~i~~d~vv 300 (306)
. ...+.+.+.+.+.+.|++++.++++++++.++++.. +.+ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~--v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVT--ARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE--EEEEeCCCeEEEEeCEEE
Confidence 0 011234566777778999999999999987545432 444 555689999999
Q ss_pred EecCC
Q 021871 301 LLPYD 305 (306)
Q Consensus 301 ~a~g~ 305 (306)
-|.|.
T Consensus 162 gADG~ 166 (502)
T PRK06184 162 GADGG 166 (502)
T ss_pred ECCCC
Confidence 99985
No 331
>PRK07588 hypothetical protein; Provisional
Probab=98.01 E-value=0.00011 Score=65.51 Aligned_cols=94 Identities=23% Similarity=0.192 Sum_probs=68.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------- 245 (306)
+|+|||+|..|+-+|..|++.+.+|+++++.+.+...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 6899999999999999999999999999876543100
Q ss_pred -ccC-----------------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 246 -LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 246 -~~~-----------------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.++ ..+...+.+.+ ..+++++++++|++++.. ++.+ .|.+++|+++.+|.||-|-|.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~d~vIgADG~ 156 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGV-RVTFERGTPRDFDLVIGADGL 156 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeE-EEEECCCCEEEeCEEEECCCC
Confidence 000 01222222323 347999999999999874 4444 488899999999999999885
No 332
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.00 E-value=7.8e-06 Score=72.15 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+.||+|||||++|+.+|+.|+++|+ +|+|+|+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence 4699999999999999999999998 9999997654
No 333
>PRK10015 oxidoreductase; Provisional
Probab=97.99 E-value=0.00015 Score=65.44 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=71.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc------------------ccc------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL------------------------ 246 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------------------~~~------------------------ 246 (306)
.|+|||+|+.|.-.|..|++.+.+|.++++.+.+. +..
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 86 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESAV 86 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCce
Confidence 68999999999999999999998888888764321 000
Q ss_pred -------------------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 247 -------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 247 -------------------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
....+...+.+.+++.|++++.+++|+.+.. +++.+.++... +..+.+|.||.|.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~-~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 87 TLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAG-DDILEANVVILADGV 162 (429)
T ss_pred EeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeC-CeEEECCEEEEccCc
Confidence 0012333566777888999999999999886 45566556654 458999999999985
No 334
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.99 E-value=0.00015 Score=64.35 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=71.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCccccc------------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR------------------------------------------ 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~~~------------------------------------------ 245 (306)
.|+|||+|+.|.-+|..|++.| .+|+++++.+...+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3789999999999999999999 999999876432000
Q ss_pred ---------------------ccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871 246 ---------------------LFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP 303 (306)
Q Consensus 246 ---------------------~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~ 303 (306)
.....+.+.+.+.+.+ .|++++.+++|++++.++++ + .|.+++|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEec
Confidence 0002234455566666 49999999999999864444 4 5778888889999999999
Q ss_pred CC
Q 021871 304 YD 305 (306)
Q Consensus 304 g~ 305 (306)
|.
T Consensus 159 G~ 160 (382)
T TIGR01984 159 GA 160 (382)
T ss_pred CC
Confidence 85
No 335
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.98 E-value=1.2e-05 Score=69.51 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=40.5
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC-CCCC-ccccccccC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP-ALTKGYLFP 103 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~-~~~~-~~~~~~~~~ 103 (306)
..++|+|||||++||++|++|++++ ++..|+++|..+..+ |-+. ...++++|.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~-p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE 64 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLG-PDVTITLFEASPRVGGWIRSDRMQNGFIFE 64 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcC-CCceEEEEecCCcccceeeeccCCCceeec
Confidence 3579999999999999999999997 567788999988764 3333 334445543
No 336
>PLN02697 lycopene epsilon cyclase
Probab=97.97 E-value=0.00014 Score=66.95 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=70.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------ 245 (306)
-.|+|||+|+.|+.+|..+++.+.+|.++.+...+...
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 35899999999999999999999999998764222100
Q ss_pred ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 246 ~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.....+.+.+.+.+.+.|+++ .+++|+.++..++ .+..+.+.+|.++.+|.||.|+|.
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~ 246 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGA 246 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCc
Confidence 001133455666777789998 5679999986434 333355677889999999999985
No 337
>PTZ00367 squalene epoxidase; Provisional
Probab=97.97 E-value=9.3e-06 Score=75.25 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=32.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
..+||+|||||++|+++|..|++.|+ +|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence 46899999999999999999999998 999999975
No 338
>PRK07190 hypothetical protein; Provisional
Probab=97.97 E-value=0.00017 Score=66.11 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=71.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------cc-
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------RL- 246 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------------------~~- 246 (306)
..|+|||+|++|+-+|..|++.|.+|.++++.+.... ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4699999999999999999999988888887654210 00
Q ss_pred ---------cC------------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 247 ---------FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 247 ---------~~------------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.. ..+...+.+.+++.|++++.+++|++++.++++. .+.+.+|+++.++.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence 00 0122345566777899999999999998754543 356677889999999999985
No 339
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.96 E-value=1.2e-05 Score=70.63 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=34.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
...+|||||||+|||+||.+|.+.|.. +++|+|..+.++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccC
Confidence 346899999999999999999998876 999999988864
No 340
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.96 E-value=0.00015 Score=67.62 Aligned_cols=93 Identities=26% Similarity=0.352 Sum_probs=70.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------c---ccCHHHHHHHHHHHHHcCCEEEcCceE
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------R---LFTPSLAQRYEQLYQQNGVKFVKGASI 272 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~gv~i~~~~~v 272 (306)
-.|+|||+|+.|+..|..+++.+.+|+++.+.. +.. . .....+.+.+.+.+++.|++++ +++|
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 468999999999999999999999999998753 211 0 0123566777778888899986 6688
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 273 KNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 273 ~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
..++.. +. ...|.+.+| .+.+|.+|+|||.
T Consensus 83 ~~i~~~-~~-~~~V~~~~g-~~~a~~lVlATGa 112 (555)
T TIGR03143 83 LDVDFD-GD-IKTIKTARG-DYKTLAVLIATGA 112 (555)
T ss_pred EEEEec-CC-EEEEEecCC-EEEEeEEEECCCC
Confidence 888853 32 225777666 7899999999995
No 341
>PRK05868 hypothetical protein; Validated
Probab=97.96 E-value=0.00017 Score=63.92 Aligned_cols=96 Identities=24% Similarity=0.172 Sum_probs=69.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------ 245 (306)
++|+|+|+|..|+-+|..|++.+.+|+++++.+.+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999877543200
Q ss_pred --ccCH------H--------HHHHHHHHHH---HcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 246 --LFTP------S--------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 246 --~~~~------~--------~~~~~~~~~~---~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.... . ....+.+.+. ..|++++++++|++++. +++.+ .|++++|+++++|.||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~-~~~~v-~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQD-DGDSV-RVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEe-cCCeE-EEEECCCCeEEeCEEEECCCC
Confidence 0000 0 0112333332 35899999999999986 34444 588899999999999999875
No 342
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.96 E-value=0.00014 Score=65.11 Aligned_cols=95 Identities=17% Similarity=0.296 Sum_probs=72.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----------cc--------------------ccc------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LL--------------------QRL------------ 246 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~----------~~--------------------~~~------------ 246 (306)
.|+|||+|..|.-+|..|++.|.+|+++++.+. .. +..
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 83 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEMQ 83 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeEE
Confidence 689999999999999999999999999987651 00 000
Q ss_pred -----------c---------------CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEE
Q 021871 247 -----------F---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300 (306)
Q Consensus 247 -----------~---------------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv 300 (306)
+ ...+.+.+.+.+++.|++++.++++++++.++++ + .|.+.+|+++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV 161 (405)
T PRK05714 84 VWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVV 161 (405)
T ss_pred EEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEE
Confidence 0 0123345556677779999999999999875444 4 4778888899999999
Q ss_pred EecCC
Q 021871 301 LLPYD 305 (306)
Q Consensus 301 ~a~g~ 305 (306)
.|.|.
T Consensus 162 gAdG~ 166 (405)
T PRK05714 162 AADGA 166 (405)
T ss_pred EecCC
Confidence 99985
No 343
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.95 E-value=0.00021 Score=63.63 Aligned_cols=95 Identities=23% Similarity=0.292 Sum_probs=72.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc---------------------c---------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------R--------------------- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~---------------------~--------------------- 245 (306)
-+|+|||+|+.|+-+|..|++.+.+|+++++.+.... .
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4699999999999999999999999999987754311 0
Q ss_pred ----------------------ccCHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871 246 ----------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL 302 (306)
Q Consensus 246 ----------------------~~~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a 302 (306)
.....+.+.+.+.+++.| ++++ ++++++++.. ++.+ .|.+.+|.++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECCCCEEEeeEEEEe
Confidence 001223445666677776 9999 8899999864 4444 588888888999999999
Q ss_pred cCC
Q 021871 303 PYD 305 (306)
Q Consensus 303 ~g~ 305 (306)
.|.
T Consensus 163 dG~ 165 (388)
T PRK07608 163 DGA 165 (388)
T ss_pred CCC
Confidence 985
No 344
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.95 E-value=2.8e-05 Score=70.57 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=67.1
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------c-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+.. . ..+.++.+...+.+++.||+++.++.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG---- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence 357899999999999999999999999999998765421 1 1345666667777888999999997541
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
. .+.+.++ ...+|.||+|||.
T Consensus 208 -~-----~v~~~~~-~~~yd~viiAtGa 228 (449)
T TIGR01316 208 -K-----TATLEEL-FSQYDAVFIGTGA 228 (449)
T ss_pred -C-----cCCHHHH-HhhCCEEEEeCCC
Confidence 0 1333333 3569999999995
No 345
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.95 E-value=0.00016 Score=64.46 Aligned_cols=95 Identities=22% Similarity=0.215 Sum_probs=70.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------c------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------R------------------ 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------------------------~------------------ 245 (306)
.|+|||+|+.|.-+|..+++.+.+|.++++.+.+.. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 378999999999999999999999999987653210 0
Q ss_pred -ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 246 -LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 246 -~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.....+.+.+.+.+.+.|++++ ..+|..+...+++.+ .|++.+|+++.+|.||.|+|.
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~-~v~~~~g~~~~a~~VI~A~G~ 139 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALS-TVYCAGGQRIQARLVIDARGF 139 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCcee-EEEeCCCCEEEeCEEEECCCC
Confidence 0012344556666777799887 457888886434443 588888889999999999995
No 346
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.95 E-value=0.00022 Score=63.37 Aligned_cols=95 Identities=22% Similarity=0.266 Sum_probs=72.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------------------------------c-------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------Q------------- 244 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------~------------- 244 (306)
.|+|||+|..|.-+|..|++.+.+|+++++.+... .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 37999999999999999999999999998885310 0
Q ss_pred -c--------------------ccCHHHHHHHHHHHHHcC-CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871 245 -R--------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL 302 (306)
Q Consensus 245 -~--------------------~~~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a 302 (306)
. .....+.+.+.+.+.+.| ++++.+++|++++.. ++.+ .+++++|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEe
Confidence 0 001123445556666666 999999999999864 4444 588889989999999999
Q ss_pred cCC
Q 021871 303 PYD 305 (306)
Q Consensus 303 ~g~ 305 (306)
.|.
T Consensus 159 dG~ 161 (385)
T TIGR01988 159 DGA 161 (385)
T ss_pred CCC
Confidence 885
No 347
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.95 E-value=1e-05 Score=75.71 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
.++.+|+|||||++||++|..|++.|+ +|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 345799999999999999999999999 999999975
No 348
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.95 E-value=0.00018 Score=55.39 Aligned_cols=42 Identities=31% Similarity=0.452 Sum_probs=32.9
Q ss_pred CCEEE-cCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 263 GVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 263 gv~i~-~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
|+++. ...+|+.|+..+++. .|.+.+|..+.+|.||+|||.+
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh~ 156 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGHQ 156 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCCC
Confidence 54443 255899999865554 5888999999999999999975
No 349
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00019 Score=61.27 Aligned_cols=94 Identities=22% Similarity=0.348 Sum_probs=71.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecC-Cc--------------ccccccCHHHHHHHHHHHHHcCCEEEcCce
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPE-NH--------------LLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~ 271 (306)
..|+|||+|+.|+-.|-++.+.+.+ +.++... +. +......+.+.+.+.+..+..++++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4689999999999999999999877 4444442 11 111124567888888888888999998 57
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 272 IKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 272 v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
|.+++..++ . ..|++++|. ++++.||+|||.
T Consensus 83 v~~v~~~~~-~-F~v~t~~~~-~~ak~vIiAtG~ 113 (305)
T COG0492 83 VEKVELEGG-P-FKVKTDKGT-YEAKAVIIATGA 113 (305)
T ss_pred EEEEeecCc-e-EEEEECCCe-EEEeEEEECcCC
Confidence 888886333 3 369999985 999999999995
No 350
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.93 E-value=0.00017 Score=66.61 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=69.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc------------------ccc------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL------------------------ 246 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------------------~~~------------------------ 246 (306)
.|+|||+|..|++.|..++..+.+|.++.+..... .+.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 47899999999999999999999999988753110 000
Q ss_pred -----------cC-HHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 247 -----------FT-PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 247 -----------~~-~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
++ ..+...+.+.+++. |++++.+ .++.+...+++.+.+|.+.+|..+.||.||+|||.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGt 152 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGT 152 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCc
Confidence 00 01223455556655 7888766 67777543467778999999999999999999984
No 351
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.00025 Score=56.24 Aligned_cols=99 Identities=22% Similarity=0.228 Sum_probs=74.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cCH
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP 249 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~-------------------------------------~~~ 249 (306)
.-.|+|+|+|++|+-.|..|++.+.+|.++.+.-.+.... .+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 4569999999999999999999999999999876543211 123
Q ss_pred HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-----------CEEecCEEEEecCC
Q 021871 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----------STIDADTVILLPYD 305 (306)
Q Consensus 250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-----------~~i~~d~vv~a~g~ 305 (306)
.+...+..+.-+.|++|+..+.|+.+-..++.+|.+|.+.=. -.++++.||-|||.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 345556666667789999999999876534436767766432 26899999999996
No 352
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.90 E-value=0.00023 Score=63.94 Aligned_cols=96 Identities=22% Similarity=0.284 Sum_probs=67.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc----cc--------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR-------------------------------------- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~----~~-------------------------------------- 245 (306)
.+|+|||+|..|.-+|..|++.|.+|+++++.+... ++
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 98 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDADY 98 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCCC
Confidence 469999999999999999999999999998765421 00
Q ss_pred -----c--------------cCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCC--C-CEEecCEEEEe
Q 021871 246 -----L--------------FTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED--G-STIDADTVILL 302 (306)
Q Consensus 246 -----~--------------~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G-~~i~~d~vv~a 302 (306)
. ....+.+.+.+.+.+. |++++.++++++++.++++. .|++.+ + .++++|.||-|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~--~v~~~~~~~~~~i~adlvIgA 176 (415)
T PRK07364 99 PGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA--TVTLEIEGKQQTLQSKLVVAA 176 (415)
T ss_pred CceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee--EEEEccCCcceEEeeeEEEEe
Confidence 0 0012233444445443 79999999999998644443 355543 2 36999999999
Q ss_pred cCC
Q 021871 303 PYD 305 (306)
Q Consensus 303 ~g~ 305 (306)
.|.
T Consensus 177 DG~ 179 (415)
T PRK07364 177 DGA 179 (415)
T ss_pred CCC
Confidence 985
No 353
>PRK09126 hypothetical protein; Provisional
Probab=97.89 E-value=0.0003 Score=62.69 Aligned_cols=96 Identities=23% Similarity=0.355 Sum_probs=70.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc-------ccc-----------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------LQR----------------------------------- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~-------~~~----------------------------------- 245 (306)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.. ..+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 46899999999999999999999999999887531 000
Q ss_pred --------ccC---------------HHHHHHHHHHH-HHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871 246 --------LFT---------------PSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301 (306)
Q Consensus 246 --------~~~---------------~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~ 301 (306)
.++ ..+.+.+.+.+ +..|++++.+++|++++.+ ++.+ .|.+++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~~-~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDGA-QVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCeE-EEEEcCCCEEEeCEEEE
Confidence 000 01222233333 3468999999999999864 4444 57888898999999999
Q ss_pred ecCC
Q 021871 302 LPYD 305 (306)
Q Consensus 302 a~g~ 305 (306)
|.|.
T Consensus 162 AdG~ 165 (392)
T PRK09126 162 ADSR 165 (392)
T ss_pred eCCC
Confidence 9985
No 354
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.89 E-value=0.00025 Score=65.99 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=69.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 244 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~------------------------------------------ 244 (306)
..+|+|||+|++|+-+|..|++.+.+|+++++.+....
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 45799999999999999999999999998888753210
Q ss_pred ---cc---------cC-------HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCC--CEEecCEEEEe
Q 021871 245 ---RL---------FT-------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTVILL 302 (306)
Q Consensus 245 ---~~---------~~-------~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G--~~i~~d~vv~a 302 (306)
.. .+ +.+.+.+.+.+.+ .|++++.+++|++++.++++..+.++..+| +++.+|.||-|
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgA 169 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGC 169 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEec
Confidence 00 00 1122334455555 399999999999999755554323332256 37999999999
Q ss_pred cCC
Q 021871 303 PYD 305 (306)
Q Consensus 303 ~g~ 305 (306)
.|.
T Consensus 170 DG~ 172 (538)
T PRK06183 170 DGA 172 (538)
T ss_pred CCC
Confidence 885
No 355
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.88 E-value=5.3e-06 Score=71.67 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCC-----------CCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMA-----------DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~-----------~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (306)
.-++|||||||.|...|-+|+..-.+ ..+|+++|..+... .+++
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-------------------------~mFd 272 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-------------------------NMFD 272 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-------------------------HHHH
Confidence 35899999999999999999875321 44678888765420 0111
Q ss_pred CCCCcCChhHHhhcCeEEEeCCcEEEEeCCCCEEEcCCCc--EEecCcEEEeeCCCCcc
Q 021871 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASR 176 (306)
Q Consensus 120 ~~~~~~~~~~~~~~~v~~~~~~~v~~v~~~~~~v~~~~g~--~~~~~~lila~G~~~~~ 176 (306)
..+..+..+.+.+.++++..++.|..++...-.+.+.+|+ .+.|..|+-+||..++.
T Consensus 273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 273 KRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred HHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence 1123456666778899999999998887765555565664 79999999999988763
No 356
>PRK09897 hypothetical protein; Provisional
Probab=97.87 E-value=0.00031 Score=64.63 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=65.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCccccc----------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR---------------------------------------- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~--~~v~~~~~~~~~~~~---------------------------------------- 245 (306)
++|+|||+|.+|+-++..|.+.. .+|+++.++..+..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998754 378888886443210
Q ss_pred --------------c-----cCHHHHHH---HHHHHHHcC--CEEEcCceEEEEEeCCCCcEEEEEeCC-CCEEecCEEE
Q 021871 246 --------------L-----FTPSLAQR---YEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTVI 300 (306)
Q Consensus 246 --------------~-----~~~~~~~~---~~~~~~~~g--v~i~~~~~v~~i~~~~~~~v~~v~~~~-G~~i~~d~vv 300 (306)
. +...+.+. +.+.+.+.| ++++.+++|++++..+ +.+ .|.+.+ |..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~-~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGV-MLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEE-EEEECCCCeEEEcCEEE
Confidence 0 00011122 233344555 7888899999998744 444 477655 4679999999
Q ss_pred EecCC
Q 021871 301 LLPYD 305 (306)
Q Consensus 301 ~a~g~ 305 (306)
+|+|.
T Consensus 160 LAtGh 164 (534)
T PRK09897 160 IATGH 164 (534)
T ss_pred ECCCC
Confidence 99996
No 357
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.87 E-value=1.6e-05 Score=71.61 Aligned_cols=96 Identities=27% Similarity=0.359 Sum_probs=27.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------- 245 (306)
.|+|||+|+.|+-.|..+++.|.+|.++++.+.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 3799999999999999999999999999998764310
Q ss_pred -----ccCH-HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---CCEEecCEEEEecCC
Q 021871 246 -----LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTVILLPYD 305 (306)
Q Consensus 246 -----~~~~-~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G~~i~~d~vv~a~g~ 305 (306)
.+++ .+...+.+.+++.|+++++++.|..+.. ++++|.+|.+.+ ..++.+|.+|-|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 0111 1122355666778999999999999997 577888888875 357999999999984
No 358
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.86 E-value=4.6e-05 Score=68.52 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=68.1
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHHcCCEEEcCceEE-EEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIK-NLE 276 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gv~i~~~~~v~-~i~ 276 (306)
.+++|+|||+|+.++..|..|++.+..|+++.+.+...... .+.++.+...+.|++.|++++.++.+- .+.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it 201 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT 201 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence 46899999999999999999999999999999987765321 244677788889999999999998774 333
Q ss_pred eCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 277 AGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 277 ~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
. ++ -.-++|+|++|+|.
T Consensus 202 ~-----------~~-L~~e~Dav~l~~G~ 218 (457)
T COG0493 202 L-----------EE-LLKEYDAVFLATGA 218 (457)
T ss_pred H-----------HH-HHHhhCEEEEeccc
Confidence 2 11 12335888888874
No 359
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.86 E-value=0.00031 Score=62.79 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=75.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc------------------c------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------L------------------------ 246 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------~------------------------ 246 (306)
.|+|||+|+.|.-.|..|++.|.+|.++.+++.+... .
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 5899999999999999999999999999887553210 0
Q ss_pred --------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 247 --------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 247 --------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
....+.+++.++.++.|++++.++.+..+..++++.+.++. .++.++.++.||.|.|.
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGDDEVRAKVVIDADGV 150 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCCEEEEcCEEEECCCc
Confidence 01234566788889999999999999999986666664444 43468999999999985
No 360
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.86 E-value=4.7e-05 Score=69.78 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=57.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
.++|+|||+|.+|+++|..|+++|+ +|+++|+.+... ...+...+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~l 60 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAIL 60 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHHH
Confidence 4689999999999999999999998 899999764210 02234557
Q ss_pred hhcCeEEEeCCcEEEEeCCCCEEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
++.|+.++.+..+. ....+|.+|+++|..+..
T Consensus 61 ~~~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 61 EALGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred HHcCCEEEECCCcc--------------ccCCCCEEEECCCcCCCC
Confidence 77899888765442 024689999999987763
No 361
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.86 E-value=0.00025 Score=62.03 Aligned_cols=97 Identities=28% Similarity=0.350 Sum_probs=70.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-----------------------------------------c---
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------------------------------Q--- 244 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-----------------------------------------~--- 244 (306)
.|+|||+|..|+-+|..|++.|.+|+++.+.+... .
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 58999999999999999999999999998876532 0
Q ss_pred -----------c-------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCC--EEecC
Q 021871 245 -----------R-------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD 297 (306)
Q Consensus 245 -----------~-------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~--~i~~d 297 (306)
. .....+.+.+.+.+++.|+++..++++++++.++++....+... +|+ ++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0 00134667788888889999999999999987555543334333 342 68999
Q ss_pred EEEEecCC
Q 021871 298 TVILLPYD 305 (306)
Q Consensus 298 ~vv~a~g~ 305 (306)
.||-|-|.
T Consensus 163 lvVgADG~ 170 (356)
T PF01494_consen 163 LVVGADGA 170 (356)
T ss_dssp EEEE-SGT
T ss_pred eeecccCc
Confidence 99999885
No 362
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.85 E-value=2.1e-05 Score=67.97 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
+.+|+|||||++||++|..|.++|+ +|.|+|+....
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeecccc
Confidence 4689999999999999999999999 99999996553
No 363
>PRK06753 hypothetical protein; Provisional
Probab=97.85 E-value=0.00023 Score=63.03 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=68.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc----cCHH----------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----FTPS---------------------------------- 250 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~----~~~~---------------------------------- 250 (306)
+|+|||+|..|+-+|..|++.+.+++++++.+.+.... +.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 68999999999999999999999999999876531000 0000
Q ss_pred --------------HHHHHHHHHHHc--CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 251 --------------LAQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 251 --------------~~~~~~~~~~~~--gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
-...+.+.|.+. +.+++++++|++++. +++.+ .|++++|+++.+|.||-|-|.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~-~~~~v-~v~~~~g~~~~~~~vigadG~ 150 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIEN-ETDKV-TIHFADGESEAFDLCIGADGI 150 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEe-cCCcE-EEEECCCCEEecCEEEECCCc
Confidence 011233333322 567999999999986 44544 588889989999999999884
No 364
>PRK12831 putative oxidoreductase; Provisional
Probab=97.85 E-value=5.6e-05 Score=68.81 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=65.6
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc-------cc-cCH-HHHHHHHHHHHHcCCEEEcCceEEEEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------RL-FTP-SLAQRYEQLYQQNGVKFVKGASIKNLE 276 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~-------~~-~~~-~~~~~~~~~~~~~gv~i~~~~~v~~i~ 276 (306)
.+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+.. .. ++. .+.....+.+++.|+++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 467899999999999999999999999999988654321 10 122 2555566778889999999986521
Q ss_pred eCCCCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871 277 AGSDGRVAAVKLEDG-STIDADTVILLPYD 305 (306)
Q Consensus 277 ~~~~~~v~~v~~~~G-~~i~~d~vv~a~g~ 305 (306)
.+...+. +.+.+|.||+|||.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa 238 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGA 238 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCC
Confidence 1222222 24569999999995
No 365
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.85 E-value=0.00016 Score=60.55 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=34.9
Q ss_pred CCEEEcCceEEEEEeCCCCcEEEEEeCC--CC--EEecCEEEEecCC
Q 021871 263 GVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTVILLPYD 305 (306)
Q Consensus 263 gv~i~~~~~v~~i~~~~~~~v~~v~~~~--G~--~i~~d~vv~a~g~ 305 (306)
-++|.++++|+.|.+ .+|+|.+|+.-+ |+ .+.+|.||+|||-
T Consensus 159 ~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 159 LVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred HHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCC
Confidence 488999999999996 789988888754 43 5889999999984
No 366
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.84 E-value=6.5e-05 Score=68.47 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=66.7
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..++..+.+|+++.+.+.+... ..+..+.+...+.+++.|++++.++.|..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 4678999999999999999999999999999988764311 134556666677888999999999877321
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+...+ ....+|.||+|||.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa 236 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGT 236 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCC
Confidence 11111 12469999999996
No 367
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.84 E-value=0.0004 Score=61.93 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=71.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------------------------------------c--c---
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------Q--R--- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------------~--~--- 245 (306)
-.|+|||+|..|.-+|..|++.+.+|+++++.+... + .
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 468999999999999999999999999988764100 0 0
Q ss_pred -----------------------ccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871 246 -----------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301 (306)
Q Consensus 246 -----------------------~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~ 301 (306)
.....+.+.+.+.+++. |++++.+++|++++..+ +.+ .|.+++|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD-DGW-ELTLADGEEIQAKLVIG 163 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-CeE-EEEECCCCEEEeCEEEE
Confidence 00112334455555655 99999999999998643 333 57788888999999999
Q ss_pred ecCC
Q 021871 302 LPYD 305 (306)
Q Consensus 302 a~g~ 305 (306)
|.|.
T Consensus 164 AdG~ 167 (391)
T PRK08020 164 ADGA 167 (391)
T ss_pred eCCC
Confidence 9985
No 368
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.00027 Score=63.42 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------cc
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------RL 246 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------------------~~ 246 (306)
.++++|||+|++|+..|..|.+.+.+++++.|.+.+.+ ..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 67899999999999999999999999999988866531 00
Q ss_pred -cC-HHHHHHHHHHHHHcCC--EEEcCceEEEEEeCCCCcEEEEEeCCC----CEEecCEEEEecCC
Q 021871 247 -FT-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTVILLPYD 305 (306)
Q Consensus 247 -~~-~~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~~~v~~v~~~~G----~~i~~d~vv~a~g~ 305 (306)
.+ .++.+.|...+++-++ .|..+++|..++...+|++ .|.+.++ +...+|.|++|||.
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh 151 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGH 151 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccC
Confidence 11 2566777777777765 6788888888886433788 4655444 35679999999995
No 369
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.83 E-value=8.1e-05 Score=67.64 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=64.8
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEecCCcccccc---------cCHHHHHHHHHHHHHcCCEEEcCceEEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN 274 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~--~~~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 274 (306)
.+++|+|||+|+.|+..|..|+. .+.+|+++.+.+.+..-. ....+...+.+.++..+|+++.+..|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg- 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG- 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence 46789999999999999999986 688999999998764211 112344556677788899999886552
Q ss_pred EEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
. .+.+++- ...+|.||+|||.
T Consensus 104 ----~-----dvtl~~L-~~~yDaVIlAtGa 124 (491)
T PLN02852 104 ----R-----DVSLSEL-RDLYHVVVLAYGA 124 (491)
T ss_pred ----c-----cccHHHH-hhhCCEEEEecCC
Confidence 1 1333332 3469999999995
No 370
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=2.9e-05 Score=64.86 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=34.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
++|++|||+|.+|+.+|..|+++|+ +|.|+|+++.++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCC
Confidence 4799999999999999999999998 999999998875
No 371
>PRK08013 oxidoreductase; Provisional
Probab=97.81 E-value=0.00042 Score=62.04 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=71.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------c--------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------R-------------- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~----------------------------~-------------- 245 (306)
..|+|||+|+.|.-+|..|++.|.+|+++++.+.... .
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4689999999999999999999999999987643100 0
Q ss_pred ---------cc---------------CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEE
Q 021871 246 ---------LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVI 300 (306)
Q Consensus 246 ---------~~---------------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv 300 (306)
.+ ...+.+.+.+.+.+. |++++.+++|++++.++++ + .|++.+|+++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcCCCEEEeeEEE
Confidence 00 012233445555554 8999999999999865444 3 5778889999999999
Q ss_pred EecCC
Q 021871 301 LLPYD 305 (306)
Q Consensus 301 ~a~g~ 305 (306)
-|-|.
T Consensus 162 gADG~ 166 (400)
T PRK08013 162 GADGA 166 (400)
T ss_pred EeCCC
Confidence 99885
No 372
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.81 E-value=2.4e-05 Score=73.32 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+.||+|||+|.|||+||..+++.|. +|+|+||...
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVPV 37 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence 45799999999999999999999998 9999998764
No 373
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.81 E-value=3.1e-05 Score=68.49 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=30.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
||+|||+|.|||++|..|.+. + +|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~---~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-F---RVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-C---cEEEEeCCCCC
Confidence 899999999999999999887 5 89999998763
No 374
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.81 E-value=3.1e-05 Score=73.97 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=35.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
....+|+|||||++||++|+.|.+.|+ +|+|+|+++..+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence 446799999999999999999999998 999999987653
No 375
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.80 E-value=4.1e-05 Score=65.41 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=74.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChhHH
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (306)
+++.+|||||..||..+--..++|- +||++|--+...- .+ +.+....+...+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~--------~m-----------------D~Eisk~~qr~L 262 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGG--------VM-----------------DGEISKAFQRVL 262 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhcc--------cc-----------------CHHHHHHHHHHH
Confidence 5799999999999999999999997 9999996544310 00 011135677788
Q ss_pred hhcCeEEEeCCcEEEEeCCCC---EEEcCC---C--cEEecCcEEEeeCCCCc
Q 021871 131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS 175 (306)
Q Consensus 131 ~~~~v~~~~~~~v~~v~~~~~---~v~~~~---g--~~~~~~~lila~G~~~~ 175 (306)
.+.+++|.++++|..+..+.. .+.+.+ + ..+++|.+++++|-.|.
T Consensus 263 ~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 263 QKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred HhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 889999999999999987654 333332 2 37999999999998765
No 376
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.80 E-value=0.00045 Score=64.45 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------c------
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------ 246 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~----------------------------------~------ 246 (306)
...|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999988877532100 0
Q ss_pred -------------------c-CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCC-EEecCEEEEecC
Q 021871 247 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTVILLPY 304 (306)
Q Consensus 247 -------------------~-~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~-~i~~d~vv~a~g 304 (306)
. ...+...+.+.+++. +++++.+++|++++.++++....++..+|+ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 011223345555554 799999999999997555543344445564 699999999998
Q ss_pred C
Q 021871 305 D 305 (306)
Q Consensus 305 ~ 305 (306)
.
T Consensus 183 ~ 183 (547)
T PRK08132 183 A 183 (547)
T ss_pred C
Confidence 5
No 377
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=8.2e-05 Score=71.92 Aligned_cols=90 Identities=17% Similarity=0.208 Sum_probs=66.9
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+... .++..+.+...+.+++.||+++.++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 3678999999999999999999999999999986543211 12445666666778889999999976511
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.+++++.....+|.||+|||.
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa 527 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGA 527 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCC
Confidence 233343345669999999995
No 378
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.79 E-value=0.00031 Score=62.21 Aligned_cols=93 Identities=24% Similarity=0.240 Sum_probs=69.6
Q ss_pred EEEEcCCHHHHHHHHHH--HhCCCcEEEEecCCcc--cc-----------------------------------------
Q 021871 210 VVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQ----------------------------------------- 244 (306)
Q Consensus 210 v~viG~g~~a~e~a~~l--~~~~~~v~~~~~~~~~--~~----------------------------------------- 244 (306)
|+|||+|+.|.-+|..+ +..+.+|.++++.+.. ..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7778899999776543 10
Q ss_pred -cccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 245 -RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
..-...+.+.+.+.+. .+..++.++.|++|+.++++. .|.+++|+.+.++.||-|.|.
T Consensus 82 ~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~--~v~~~~g~~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGV--LVVLADGRTIRARVVVDARGP 140 (374)
T ss_pred EEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceE--EEEECCCCEEEeeEEEECCCc
Confidence 0011235566667777 445577788999999754423 588999999999999999884
No 379
>PRK06185 hypothetical protein; Provisional
Probab=97.78 E-value=0.00061 Score=61.07 Aligned_cols=98 Identities=22% Similarity=0.270 Sum_probs=70.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc----------------------------------------cc-
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QR- 245 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~----------------------------------------~~- 245 (306)
...|+|||+|.+|.-+|..|++.+.+|+++++.+... ..
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 3569999999999999999999999999998764210 00
Q ss_pred -------------------ccCHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEE--eCCCC-EEecCEEEEe
Q 021871 246 -------------------LFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS-TIDADTVILL 302 (306)
Q Consensus 246 -------------------~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~--~~~G~-~i~~d~vv~a 302 (306)
.....+.+.+.+.+.+ .|++++.+++++++... ++.+.+|. ..+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0011233445555554 48999999999999864 55554444 44664 7999999999
Q ss_pred cCC
Q 021871 303 PYD 305 (306)
Q Consensus 303 ~g~ 305 (306)
.|.
T Consensus 165 dG~ 167 (407)
T PRK06185 165 DGR 167 (407)
T ss_pred CCC
Confidence 985
No 380
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00056 Score=61.86 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCccccc-----------------------------ccC--HHHHHH
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR-----------------------------LFT--PSLAQR 254 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~~~~~~~-----------------------------~~~--~~~~~~ 254 (306)
..+|+|||+|.+|+-+|..|.+.+.. +.++++...+... .++ +...+.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 45799999999999999999999988 9999888643210 000 125666
Q ss_pred HHHHHHHcCC--EEEcCceEEEEEeCCCCcEEEEEeCCCCE--EecCEEEEecCC
Q 021871 255 YEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTVILLPYD 305 (306)
Q Consensus 255 ~~~~~~~~gv--~i~~~~~v~~i~~~~~~~v~~v~~~~G~~--i~~d~vv~a~g~ 305 (306)
+...+++.+. ++..++.|..+..++++..-.|++++|.. +.+|.||+|||.
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 7777776654 34445666666665555433688888865 459999999995
No 381
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=4e-05 Score=68.56 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=30.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
..+||+|||||.||+.||...++.|. ++.++.-+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCC---eEEEEEcCC
Confidence 34899999999999999999999998 777766543
No 382
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.75 E-value=2.1e-05 Score=67.26 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=29.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
||+||||+|.+|..+|.+|++.+. .+|+|+|+....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~--~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGN--KKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTT--S-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCC--CcEEEEEccccC
Confidence 699999999999999999999862 289999998664
No 383
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.74 E-value=0.00012 Score=67.13 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=66.2
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++++|||+|..|+..|..|++.+.+|+++.+.+.+. +. .++..+.....+.+++.||+++.++.+.. .
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence 35799999999999999999999999999999887643 11 12445666666778889999999987741 1
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+.. ++....+|.||+|||.
T Consensus 220 --------~~~-~~~~~~~d~VilAtGa 238 (485)
T TIGR01317 220 --------ISA-DELKEQFDAVVLAGGA 238 (485)
T ss_pred --------cCH-HHHHhhCCEEEEccCC
Confidence 100 1113568999999985
No 384
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.73 E-value=0.00068 Score=60.38 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=69.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc--------------------------------------cc---
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------------RL--- 246 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~--------------------------------------~~--- 246 (306)
..|+|||+|..|+-+|..|++.+.+|+++++.+.... ..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~ 87 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI 87 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence 4699999999999999999999999999988643100 00
Q ss_pred ------c---------------CHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 247 ------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 247 ------~---------------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
+ ...+.+.+.+.+.+. ++. +.+++|++++.+ ++.+ .|++++|+++.+|.||.|.|
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPR-EDEV-TVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEc-CCeE-EEEECCCCEEEEeEEEEecC
Confidence 0 012334455556555 455 779999999864 4444 47888888999999999998
Q ss_pred C
Q 021871 305 D 305 (306)
Q Consensus 305 ~ 305 (306)
.
T Consensus 165 ~ 165 (388)
T PRK07494 165 R 165 (388)
T ss_pred C
Confidence 5
No 385
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.70 E-value=0.00015 Score=71.93 Aligned_cols=89 Identities=21% Similarity=0.173 Sum_probs=66.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 278 (306)
+++|+|||+|+.|+..|.+|++.+.+|+++.+.+.+... ..+.++.+...+.+++.||++++++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence 578999999999999999999999999999988665321 1245677777788899999999997541
Q ss_pred CCCcEEEEEeCCC-CEEecCEEEEecCC
Q 021871 279 SDGRVAAVKLEDG-STIDADTVILLPYD 305 (306)
Q Consensus 279 ~~~~v~~v~~~~G-~~i~~d~vv~a~g~ 305 (306)
.+ +...+- +...+|.||+|||.
T Consensus 505 ~~-----~~~~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 505 KT-----FTVPQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred Cc-----cCHHHHhhccCCCEEEEecCC
Confidence 11 111110 02458999999996
No 386
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.70 E-value=4.7e-05 Score=67.66 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=31.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+|+|||||.+|+.+|..|+++|+ +|+|+|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence 389999999999999999999998 9999998655
No 387
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.69 E-value=5.4e-05 Score=69.88 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
..+||||||+| +||+||+++++.|. +|+|+||...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCC
Confidence 35799999999 99999999999998 9999999865
No 388
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.68 E-value=0.00095 Score=59.76 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=67.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------------------c---
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R--- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~---------------------------------------~--- 245 (306)
++|+|||+|..|+-+|..|++.|.+|+++.+.+.+.. .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 6899999999999999999999988988887654210 0
Q ss_pred -cc--------------------CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe---CCCCEEecCEEE
Q 021871 246 -LF--------------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTVI 300 (306)
Q Consensus 246 -~~--------------------~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~~i~~d~vv 300 (306)
.. ...+.+.+.+.+.+ .+++++++++|++++..+++ + .+++ .+++++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence 00 01233444555544 37999999999999864343 3 3444 334579999999
Q ss_pred EecCC
Q 021871 301 LLPYD 305 (306)
Q Consensus 301 ~a~g~ 305 (306)
-|-|.
T Consensus 161 gADG~ 165 (400)
T PRK06475 161 ACDGV 165 (400)
T ss_pred ECCCc
Confidence 99875
No 389
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.67 E-value=5.6e-05 Score=70.41 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
..+||+|||+|.|||+||..+++.|. +|+|+||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 45899999999999999999999998 999999987
No 390
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.67 E-value=0.00076 Score=67.14 Aligned_cols=97 Identities=20% Similarity=0.147 Sum_probs=68.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHHc-CCEEEcCceEEEE
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL 275 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i 275 (306)
..+|+|||+|+.|+..|..+++.+.+|+++...+.+.+... ...+...+.+.+++. +++++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 46799999999999999999999999999998766543211 123334455556655 5999999999888
Q ss_pred EeCCCCcEEEEEeC--------CC------CEEecCEEEEecCC
Q 021871 276 EAGSDGRVAAVKLE--------DG------STIDADTVILLPYD 305 (306)
Q Consensus 276 ~~~~~~~v~~v~~~--------~G------~~i~~d~vv~a~g~ 305 (306)
.. ++.+..+... ++ ..+.+|.||+|||.
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa 284 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA 284 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC
Confidence 63 3332222110 11 15889999999995
No 391
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.67 E-value=0.00023 Score=69.75 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeC
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 278 (306)
+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+... ..+.+..+...+.+.+.||+++.++.. .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d---- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D---- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence 578999999999999999999999999999987654321 123445555556777889999988421 1
Q ss_pred CCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 279 SDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 279 ~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+...+.....+|.||+|||.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA 631 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGA 631 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCC
Confidence 11222234568999999995
No 392
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.67 E-value=0.00074 Score=53.77 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cCH
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP 249 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~-------------------------------------~~~ 249 (306)
.-.|+|+|+|++|+-.|..|++.+.+|.++.+...+.... .+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 3569999999999999999999999999999875543110 012
Q ss_pred HHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC------C-----CEEecCEEEEecCC
Q 021871 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G-----STIDADTVILLPYD 305 (306)
Q Consensus 250 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~------G-----~~i~~d~vv~a~g~ 305 (306)
.+...+....-+.|++++..+.|+.+-..++++|.+|.+.- | -.++++.||-|||.
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 34445555555589999999999987654557888877632 2 17999999999986
No 393
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00047 Score=54.80 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=70.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcE--------------------EEEecCCcccccccCHHHHHHHHHHHHHcCCEE
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDT--------------------TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 266 (306)
..+|+|||+|+.+.-.|..+++.-.+. |-+..-|.+......+++.+.+++...+.|.+|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 468999999999998888887653222 223344445555567899999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 267 ~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
++. .|.+++.+ ..-. .+.++. +.+.+|.||+|||-
T Consensus 88 ~tE-tVskv~~s-skpF-~l~td~-~~v~~~avI~atGA 122 (322)
T KOG0404|consen 88 ITE-TVSKVDLS-SKPF-KLWTDA-RPVTADAVILATGA 122 (322)
T ss_pred eee-ehhhcccc-CCCe-EEEecC-CceeeeeEEEeccc
Confidence 987 58888853 3222 466654 48999999999984
No 394
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.66 E-value=0.00017 Score=65.84 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=65.8
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|++.+.+|+++.+.+.+... ..+..+.....+.+.+.||+++.++.+.. ..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~ 220 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI 220 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence 3578999999999999999999999999999988765321 12445556666778889999999986632 10
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
... .....+|.||+|||.
T Consensus 221 ---------~~~-~~~~~~d~vvlAtGa 238 (471)
T PRK12810 221 ---------TAE-ELLAEYDAVFLGTGA 238 (471)
T ss_pred ---------CHH-HHHhhCCEEEEecCC
Confidence 000 112468999999986
No 395
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.65 E-value=0.0012 Score=58.86 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=68.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC--ccc---c---c--ccC------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---Q---R--LFT------------------------------ 248 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~--~~~---~---~--~~~------------------------------ 248 (306)
+|+|||+|+.|.-+|..|++.|.+|+++++.+ .+. + + .+.
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~~ 84 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLETW 84 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEEE
Confidence 69999999999999999999999999999764 100 0 0 000
Q ss_pred -------------------------HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEe
Q 021871 249 -------------------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILL 302 (306)
Q Consensus 249 -------------------------~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a 302 (306)
..+...+.+.+++ .|++++.+++|++++.++++ + .|.+++|.++.+|.||-|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgA 162 (384)
T PRK08849 85 EHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGA 162 (384)
T ss_pred eCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEe
Confidence 0011122233333 37999999999999875444 3 588889999999999999
Q ss_pred cCC
Q 021871 303 PYD 305 (306)
Q Consensus 303 ~g~ 305 (306)
.|.
T Consensus 163 DG~ 165 (384)
T PRK08849 163 DGA 165 (384)
T ss_pred cCC
Confidence 986
No 396
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.64 E-value=0.00019 Score=68.10 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=66.9
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|+..|.+|+++.+.+.+... .++..+.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 4689999999999999999999999999999998764321 13555666666778899999999987631
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+ +.+.+ ....+|.||+|||.
T Consensus 386 --~-----~~~~~-l~~~~DaV~latGa 405 (639)
T PRK12809 386 --D-----ITFSD-LTSEYDAVFIGVGT 405 (639)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCC
Confidence 0 11111 13458999999985
No 397
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.64 E-value=0.00099 Score=59.74 Aligned_cols=96 Identities=22% Similarity=0.341 Sum_probs=70.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccc------------c--------------ccc--------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL------------L--------------QRL-------------- 246 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~-~~~------------~--------------~~~-------------- 246 (306)
.+|+|||+|..|.-+|..|++.|.+|+++++. +.. + ...
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 84 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW 84 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence 47999999999999999999999999999875 110 0 000
Q ss_pred ---------c---------------CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEE
Q 021871 247 ---------F---------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVIL 301 (306)
Q Consensus 247 ---------~---------------~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~ 301 (306)
+ ...+...+.+.+.+ .|++++.+++|++++.+++ .+ .|.+++|+++.+|.||-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~lvIg 162 (405)
T PRK08850 85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES-EA-WLTLDNGQALTAKLVVG 162 (405)
T ss_pred eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC-eE-EEEECCCCEEEeCEEEE
Confidence 0 01123344444444 4799999999999986444 33 58888999999999999
Q ss_pred ecCC
Q 021871 302 LPYD 305 (306)
Q Consensus 302 a~g~ 305 (306)
|.|.
T Consensus 163 ADG~ 166 (405)
T PRK08850 163 ADGA 166 (405)
T ss_pred eCCC
Confidence 9985
No 398
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.62 E-value=0.00088 Score=60.26 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=66.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcccccc-----------------c-----------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL-----------------F----------------------- 247 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~~~~-----------------~----------------------- 247 (306)
+|+|||+|..|+-+|..|.+.+ .+|+++++.+.+.... .
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999987 5899998876532100 0
Q ss_pred CHH------------------HHHHHHHHHHHc--CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPS------------------LAQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~------------------~~~~~~~~~~~~--gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
... ....+.+.|.+. ++.++.+++|++++.++++ + .|.+++|+++++|.||.|.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCc
Confidence 000 011122222221 4568889999999874444 4 588889989999999999985
No 399
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.62 E-value=8.4e-05 Score=70.17 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=32.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
..+||+|||||.|||+||..+++.|. +|+|+||...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence 35799999999999999999999998 9999999754
No 400
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.59 E-value=0.0017 Score=57.90 Aligned_cols=96 Identities=28% Similarity=0.383 Sum_probs=69.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCC-c------c-------c-------------c-------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H------L-------L-------------Q------------- 244 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~-~------~-------~-------------~------------- 244 (306)
-+|+|||+|..|.-+|..|++. |.+|+++++.. . . . +
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4689999999999999999998 99999999841 1 0 0 0
Q ss_pred ---c------cc---------------CHHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEE
Q 021871 245 ---R------LF---------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTV 299 (306)
Q Consensus 245 ---~------~~---------------~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~v 299 (306)
. .+ ...+...+.+.+.+ .|++++.+++|+++... ++.+ .|++++|..+.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEE
Confidence 0 00 01122334444444 47999999999999863 4444 488888888999999
Q ss_pred EEecCC
Q 021871 300 ILLPYD 305 (306)
Q Consensus 300 v~a~g~ 305 (306)
|.|.|.
T Consensus 162 I~AdG~ 167 (395)
T PRK05732 162 VAADGS 167 (395)
T ss_pred EEecCC
Confidence 999985
No 401
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.59 E-value=0.0014 Score=58.08 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=69.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC----cc----c-----------------------------------cc
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----L-----------------------------------QR 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~----~~----~-----------------------------------~~ 245 (306)
+|+|||+|..|.-+|..|++.+.+|+++++.+ .+ . +.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999998652 10 0 00
Q ss_pred ------------------ccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 246 ------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 246 ------------------~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.....+...+.+.+.+. +++++.+++++++...++ .+ .|.++++ ++.+|.||-|-|.
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v-~v~~~~~-~~~adlvIgADG~ 158 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND-YS-IIKFDDK-QIKCNLLIICDGA 158 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC-eE-EEEEcCC-EEeeCEEEEeCCC
Confidence 00123455566666665 499999999999986444 44 4777766 9999999999885
No 402
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.59 E-value=9.6e-05 Score=69.19 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=33.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
..+||||||+|.+||+||+.+++.|. +|+|+||....
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~---~VivlEk~~~~ 46 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGL---DTLVVEKSAHF 46 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCC---cEEEEEcCCCC
Confidence 35899999999999999999999998 99999998764
No 403
>PLN02661 Putative thiazole synthesis
Probab=97.58 E-value=0.0016 Score=56.30 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=69.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcccccc-------------------------------------cCH
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQRL-------------------------------------FTP 249 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~-~~~v~~~~~~~~~~~~~-------------------------------------~~~ 249 (306)
-.|+|||+|..|+-.|..+++. +.+|+++.+...+.... ...
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~ 172 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA 172 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence 4799999999999999999975 78999998875432100 001
Q ss_pred HHHHHHHH-HHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC------C--C------CEEecCEEEEecCC
Q 021871 250 SLAQRYEQ-LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTVILLPYD 305 (306)
Q Consensus 250 ~~~~~~~~-~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~------~--G------~~i~~d~vv~a~g~ 305 (306)
.+.+.+.+ .+++.|++++.++.+.++.. +++++.+|.+. + + ..+.++.||+|||.
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 12223443 44457999999999999886 56777787741 1 1 26899999999994
No 404
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.57 E-value=0.00011 Score=68.51 Aligned_cols=57 Identities=28% Similarity=0.339 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCC--EEec-CEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~--~i~~-d~vv~a~g~ 305 (306)
...+...+.+.+++.|++++++++++++.. ++++|.+|... +|+ .+.+ +.||+|||-
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG 267 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGG 267 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCC
Confidence 456677777888888999999999998875 46777787663 343 3667 478988874
No 405
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.56 E-value=8.2e-05 Score=71.90 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.7
Q ss_pred cEEEEcCChHHHHHHHHHHHc--CCCCCcEEEeccCCC
Q 021871 53 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY 88 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~--g~~~~~V~vie~~~~ 88 (306)
+|+|||||++||++|..|++. |+ +|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~---~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAH---EVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCC---eEEEEecCCC
Confidence 799999999999999999998 66 9999999875
No 406
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.55 E-value=9e-05 Score=70.20 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
.+||+|||||.|||.||..+++.|. +|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCCC
Confidence 5799999999999999999999998 9999998754
No 407
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.55 E-value=0.00068 Score=59.90 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=61.0
Q ss_pred EEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCccccc--------ccCHHHH---------------------------
Q 021871 210 VVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--------LFTPSLA--------------------------- 252 (306)
Q Consensus 210 v~viG~g~~a~e~a~~l~~~--~~~v~~~~~~~~~~~~--------~~~~~~~--------------------------- 252 (306)
|+|||+|..|..+|..|++. +.+|.++.+.+...+. ...+...
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~ 81 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT 81 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence 78999999999999999986 8899999887633210 0111000
Q ss_pred -------HHHHHH-HHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 253 -------QRYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 253 -------~~~~~~-~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
..+.+. +++.+..++.+++|++++ +++ |++.+|+++.+|.||.|.|.
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~----v~l~dg~~~~A~~VI~A~G~ 136 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADG----VDLAPGTRINARSVIDCRGF 136 (370)
T ss_pred CceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCE----EEECCCCEEEeeEEEECCCC
Confidence 011122 222244477788999885 332 45578889999999999984
No 408
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.54 E-value=0.00032 Score=66.64 Aligned_cols=89 Identities=21% Similarity=0.213 Sum_probs=65.7
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|+..+.+|+++.+.+.+. +. ..+..+.+...+.+.+.|++++.++.+. +.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 46789999999999999999999999999999887642 11 1345566666777888999999987541 11
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+...+. ...+|.||+|||.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa 288 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGA 288 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCC
Confidence 112211 2359999999985
No 409
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.54 E-value=0.0012 Score=59.08 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=33.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAP 90 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~~~~ 90 (306)
.+++=|||+|+|+|++|.+|.+-+. +..+|+|+|+.+..+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G 42 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG 42 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence 3578899999999999999998654 677999999987653
No 410
>PRK02106 choline dehydrogenase; Validated
Probab=97.54 E-value=0.00011 Score=68.56 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHH-cCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~-~g~~~~~V~vie~~~~ 88 (306)
...+|+||||||.+|+.+|.+|++ .|+ +|+|+|+...
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~---~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDV---SVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCC---eEEEecCCCc
Confidence 345899999999999999999999 677 9999999854
No 411
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.52 E-value=0.0023 Score=57.09 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=69.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc------c-----------------------------------c-
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------Q-----------------------------------R- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------~-----------------------------------~- 245 (306)
.+|+|||+|+.|.-+|..|++.|.+|+++++.+... . .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 469999999999999999999999999998876310 0 0
Q ss_pred ----cc-------------CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe-CCCC--EEecCEEEEecCC
Q 021871 246 ----LF-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 246 ----~~-------------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~-~~G~--~i~~d~vv~a~g~ 305 (306)
.+ .+.+.+.+.+...+.|++++.++++++++..+++.+ .|.+ .+|+ ++.+|.||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCC
Confidence 00 122334455555677999999999999975222222 4555 4664 6899999999875
No 412
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.51 E-value=0.00034 Score=66.61 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=64.6
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|..|+..+.+|+++.+.+.+.+. .++..+.+...+.+++.|++++.++.|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 4679999999999999999999999999999987664311 12345555556677888999999986621
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+ +...+ ....+|.||+|||.
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa 422 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGT 422 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCC
Confidence 0 11111 12358999999985
No 413
>PRK06996 hypothetical protein; Provisional
Probab=97.50 E-value=0.0017 Score=58.07 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=71.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC----CcEEEEecCCccc------------------------------------c--
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHLL------------------------------------Q-- 244 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~----~~v~~~~~~~~~~------------------------------------~-- 244 (306)
...|+|||+|+.|.-+|..|++.+ .+|+++.+.+... .
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 457999999999999999999876 4688888753110 0
Q ss_pred c--------------------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC---CEEecCEEEE
Q 021871 245 R--------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTVIL 301 (306)
Q Consensus 245 ~--------------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G---~~i~~d~vv~ 301 (306)
. .....+.+.+.+.+++.|++++.++++++++.++++. .+.+.+| +++.+|.||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEEE
Confidence 0 0013456778888888899999999999998654543 4666644 5899999999
Q ss_pred ecC
Q 021871 302 LPY 304 (306)
Q Consensus 302 a~g 304 (306)
|.|
T Consensus 169 ADG 171 (398)
T PRK06996 169 AEG 171 (398)
T ss_pred CCC
Confidence 988
No 414
>PRK06126 hypothetical protein; Provisional
Probab=97.50 E-value=0.0022 Score=59.94 Aligned_cols=99 Identities=22% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------------
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~----------------------------------------- 245 (306)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+.....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 357999999999999999999999999998876431100
Q ss_pred -------------c----------------------cC-HHHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe
Q 021871 246 -------------L----------------------FT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL 288 (306)
Q Consensus 246 -------------~----------------------~~-~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~ 288 (306)
. .+ ..+...+.+.+++ .|++++++++|++++.++++....+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 0 00 0122334444444 489999999999999744443322322
Q ss_pred -CCCC--EEecCEEEEecCC
Q 021871 289 -EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 289 -~~G~--~i~~d~vv~a~g~ 305 (306)
.+|+ ++.+|.||.|.|.
T Consensus 167 ~~~g~~~~i~ad~vVgADG~ 186 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGA 186 (545)
T ss_pred CCCCcEEEEEEEEEEecCCc
Confidence 3454 6899999999985
No 415
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.49 E-value=0.0023 Score=58.45 Aligned_cols=95 Identities=26% Similarity=0.360 Sum_probs=68.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc--------------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------------- 243 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------------------- 243 (306)
..|+|||+|..|+-.|..+++.+.+|.++...+...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 368999999999999999998888888877642100
Q ss_pred ---------------------------cc------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC
Q 021871 244 ---------------------------QR------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290 (306)
Q Consensus 244 ---------------------------~~------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~ 290 (306)
++ .....+.+.+.+.+++.||+++.+ .++.+.. +++.+.++.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 00 001234556667777889999876 7878765 4677777776 4
Q ss_pred CCEEecCEEEEecCC
Q 021871 291 GSTIDADTVILLPYD 305 (306)
Q Consensus 291 G~~i~~d~vv~a~g~ 305 (306)
|+.+.+|.||+|||.
T Consensus 159 g~~i~a~~VVLATGG 173 (466)
T PRK08401 159 GELLKFDATVIATGG 173 (466)
T ss_pred CEEEEeCeEEECCCc
Confidence 568999999999985
No 416
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.48 E-value=0.00014 Score=66.77 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=33.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
+||+|||+|++|+.+|+.|++.|+ +|+++|+....+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~---~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGL---KVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCC---eEEEEeccCccC
Confidence 599999999999999999999998 999999987754
No 417
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.00044 Score=62.11 Aligned_cols=96 Identities=22% Similarity=0.333 Sum_probs=68.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---------------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------- 243 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------------------------------------------- 243 (306)
.|.|||+|..|+|.|...++.|.++.++.....-.
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~s 85 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNSS 85 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccCC
Confidence 58999999999999999999998887776553311
Q ss_pred --ccc------cCH-HHHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 244 --QRL------FTP-SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 244 --~~~------~~~-~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
|.. .+. .....+++.++. .|..++.+ .|..+...++.+|.+|.+.+|..+.|+.||++||.
T Consensus 86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 000 000 123344555543 37887776 57777653444688999999999999999999984
No 418
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.43 E-value=0.00015 Score=67.35 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=31.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
...+||+|||+|.|||+||..+. .|. +|+|+||...
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~---~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHL---RVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCC---CEEEEEccCC
Confidence 34579999999999999999996 476 9999999865
No 419
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.43 E-value=0.00015 Score=67.98 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=30.0
Q ss_pred cEEEEcCChHHHHHHHHHH----HcCCCCCcEEEeccCCC
Q 021871 53 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY 88 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~----~~g~~~~~V~vie~~~~ 88 (306)
||+|||||.|||+||..++ +.|. +|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence 7999999999999999998 6677 9999999764
No 420
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.42 E-value=0.00018 Score=61.62 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=33.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
....||+|||||.+|.+.|+.|++.|. +|.|||++-.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~ 79 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLS 79 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCc---EEEEEecccc
Confidence 345799999999999999999999998 9999999744
No 421
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.41 E-value=1.1e-05 Score=71.70 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC---C
Q 021871 215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G 291 (306)
Q Consensus 215 ~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~---G 291 (306)
+-..++|..+.|.+....-.+++-... ..+..+.-.+.-...+.|..+....+|.+.-.++++++.++...| |
T Consensus 194 Sk~~alE~fPmL~~~~L~Ga~VYyDGQ----~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG 269 (680)
T KOG0042|consen 194 SKKEALEIFPMLRKDNLKGAMVYYDGQ----HNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITG 269 (680)
T ss_pred cHHHHHHhCccccccCceeEEEEecCC----CchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecC
Confidence 344578888888877655555443322 135666666777777889999888889887766777776766544 4
Q ss_pred C--EEecCEEEEecCC
Q 021871 292 S--TIDADTVILLPYD 305 (306)
Q Consensus 292 ~--~i~~d~vv~a~g~ 305 (306)
+ .|.+..||.|||-
T Consensus 270 ~e~~I~Ak~VVNATGp 285 (680)
T KOG0042|consen 270 KEYEIRAKVVVNATGP 285 (680)
T ss_pred cEEEEEEEEEEeCCCC
Confidence 4 4789999999984
No 422
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.41 E-value=0.0038 Score=55.63 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=66.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Cccc--------------------------------cc----------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL--------------------------------QR---------- 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~-~~~~--------------------------------~~---------- 245 (306)
.|+|||+|+.|.-.|..|++.+.+|.++++. +... +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 4899999999999999999999999999886 2110 00
Q ss_pred ---c---cC-HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCC------C--CEEecCEEEEecCC
Q 021871 246 ---L---FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTVILLPYD 305 (306)
Q Consensus 246 ---~---~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~------G--~~i~~d~vv~a~g~ 305 (306)
. .+ ..+.+.+.+.+.+.|++++.+ .++++..++ +.+ .|++.+ | .++.+|.||-|.|.
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGA 153 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCC
Confidence 0 00 123345666677789999866 588888644 433 354432 2 36999999999985
No 423
>PLN03000 amine oxidase
Probab=97.40 E-value=0.00025 Score=68.14 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=34.6
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
...+|+|||||++||.+|+.|.+.|+ +|+|+|+++..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence 45799999999999999999999998 999999987754
No 424
>PRK07538 hypothetical protein; Provisional
Probab=97.40 E-value=0.0037 Score=56.20 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=66.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------- 245 (306)
+|+|||+|..|+-+|..|++.+.+|+++.+.+.+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 5899999999999999999999999999887542100
Q ss_pred -----------------ccCHHHHHHHHHHHHH-cC-CEEEcCceEEEEEeCCCCcEEEEEeC-CC--CEEecCEEEEec
Q 021871 246 -----------------LFTPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTVILLP 303 (306)
Q Consensus 246 -----------------~~~~~~~~~~~~~~~~-~g-v~i~~~~~v~~i~~~~~~~v~~v~~~-~G--~~i~~d~vv~a~ 303 (306)
.....+.+.+.+.+.+ .| ++++.+++|++++.++++.++.+... +| +++.+|.||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence 0001122334444444 35 57999999999987666644333322 12 489999999998
Q ss_pred CC
Q 021871 304 YD 305 (306)
Q Consensus 304 g~ 305 (306)
|.
T Consensus 162 G~ 163 (413)
T PRK07538 162 GI 163 (413)
T ss_pred CC
Confidence 85
No 425
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.37 E-value=0.0035 Score=58.35 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-------CC-CEEecCEEEEecCC
Q 021871 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------DG-STIDADTVILLPYD 305 (306)
Q Consensus 251 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-------~G-~~i~~d~vv~a~g~ 305 (306)
+...+.+.+++.||+++.++.+.++..++++++.++... +| ..+.++.||+|||-
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 445566777778999999999999876445677777653 22 35889999999984
No 426
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.37 E-value=0.00024 Score=66.00 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
..+||+|||+|.|||+||..+++. . +|+|+||...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~---~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-R---RVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-C---CEEEEeccCC
Confidence 357999999999999999999885 5 9999999865
No 427
>PLN02815 L-aspartate oxidase
Probab=97.36 E-value=0.00024 Score=66.52 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
..+||+|||+|.|||+||..+++.| +|+|+||...
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G----~VvlleK~~~ 62 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG----TVAIITKDEP 62 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC----CEEEEECCCC
Confidence 3579999999999999999999887 5999999765
No 428
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.35 E-value=5.3e-05 Score=59.52 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=32.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
.||+|||+|.+||++|+.+..+. |+.+|++||..-..
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSVAP 113 (328)
T ss_pred cceEEECCCccccceeeeeeccC-CCceEEEEEeeecC
Confidence 59999999999999999999775 78899999987543
No 429
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.34 E-value=0.00025 Score=65.57 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
..++||+|||||.|||.||..+++.|. +|.++||....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~~~ 41 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAPPK 41 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEccccC
Confidence 456899999999999999999999997 99999997654
No 430
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.33 E-value=0.0044 Score=56.06 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=39.5
Q ss_pred HHHHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEE-eCCCC--EEecCEEEEecCC
Q 021871 251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTVILLPYD 305 (306)
Q Consensus 251 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~-~~~G~--~i~~d~vv~a~g~ 305 (306)
+.+.+.+.+++ .||++++++.++.+.. +++++.+|. ..+|+ .+.++.||+|||-
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 44555656654 5999999999999875 466666754 33454 5889999999984
No 431
>PRK13984 putative oxidoreductase; Provisional
Probab=97.32 E-value=0.00069 Score=64.00 Aligned_cols=89 Identities=20% Similarity=0.179 Sum_probs=65.5
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++++|||+|+.|+..|..|.+.+.+|+++.+.+..... ..+..+.....+.+++.|++++.++.|.. +
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK-D- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC-c-
Confidence 4678999999999999999999999999999887754211 12344555556678889999999987732 1
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..++ ....+|.||+|||.
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa 378 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGF 378 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCc
Confidence 11111 13579999999994
No 432
>PLN02785 Protein HOTHEAD
Probab=97.32 E-value=0.0004 Score=64.91 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=31.4
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
..+|++|||||.+|+.+|.+|.+ +. +|+|+|++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~---~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NF---SVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CC---cEEEEecCCC
Confidence 46999999999999999999999 45 9999999853
No 433
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.29 E-value=0.0058 Score=55.39 Aligned_cols=97 Identities=21% Similarity=0.284 Sum_probs=69.6
Q ss_pred eEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCC--ccc--------------------------------cc-----
Q 021871 209 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL--------------------------------QR----- 245 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~----~~~~v~~~~~~~--~~~--------------------------------~~----- 245 (306)
.|+|||+|+.|.-+|..|++ .+.+|+++++.+ ... ..
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 48999999999999999998 788999998832 100 00
Q ss_pred --------------------------------ccCHHHHHHHHHHHHHcC---CEEEcCceEEEEEeC-----CCCcEEE
Q 021871 246 --------------------------------LFTPSLAQRYEQLYQQNG---VKFVKGASIKNLEAG-----SDGRVAA 285 (306)
Q Consensus 246 --------------------------------~~~~~~~~~~~~~~~~~g---v~i~~~~~v~~i~~~-----~~~~v~~ 285 (306)
.....+...+.+.+++.+ ++++.+++|++++.. +++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 001123444566666654 999999999999742 1222236
Q ss_pred EEeCCCCEEecCEEEEecCC
Q 021871 286 VKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 286 v~~~~G~~i~~d~vv~a~g~ 305 (306)
|++.+|+++.+|.||-|-|.
T Consensus 162 v~~~~g~~i~a~llVgADG~ 181 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGS 181 (437)
T ss_pred EEEcCCCEEEeeEEEEecCC
Confidence 88899999999999999875
No 434
>PRK11445 putative oxidoreductase; Provisional
Probab=97.28 E-value=0.0086 Score=52.61 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=64.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc--------ccccC--------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFT-------------------------------- 248 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~--------~~~~~-------------------------------- 248 (306)
.|+|||+|+.|.-+|..|++. .+|+++++.+... ...+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 8999999875320 00000
Q ss_pred -----------------HHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe-CCCC--EEecCEEEEecCC
Q 021871 249 -----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 249 -----------------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~-~~G~--~i~~d~vv~a~g~ 305 (306)
..+...+.+ ..+.|++++.++.+++++..+++ + .|.+ .+|+ ++.+|.||.|+|.
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCC
Confidence 001112222 23568999999999999874444 3 3554 5664 6899999999986
No 435
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.28 E-value=0.006 Score=54.44 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=68.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc------ccc------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------LQR------------------------------------ 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~------~~~------------------------------------ 245 (306)
.+|+|||+|..|.-+|..|++.|.+|+++++.+.. ...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 57999999999999999999999999999987631 000
Q ss_pred ----------------cc-CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeC-CCC--EEecCEEEEecCC
Q 021871 246 ----------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTVILLPYD 305 (306)
Q Consensus 246 ----------------~~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~-~G~--~i~~d~vv~a~g~ 305 (306)
.. .+.+...+.+.+.+.|++++.+..++.+...++..+ .|.+. +|+ ++++|.||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCC
Confidence 00 012334455666677899999988877754222222 46664 675 6899999998875
No 436
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.27 E-value=0.0003 Score=69.31 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=32.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
..+||+|||||.|||.||..+++.|. +|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence 35799999999999999999999998 9999999764
No 437
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.24 E-value=0.0022 Score=59.70 Aligned_cols=94 Identities=18% Similarity=0.363 Sum_probs=70.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCccc------ccccCH-----HHHHHHHHHHHHcCCEEEcCceEE
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL------QRLFTP-----SLAQRYEQLYQQNGVKFVKGASIK 273 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~---~~~v~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~gv~i~~~~~v~ 273 (306)
.+++|||.|..|.....++.+. ..++|++...++.- .+.+++ ++.-.-.+.++++||+++.+.+|.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 5789999999999988888874 34677776655432 111111 222223567889999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 274 NLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 274 ~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.|.. +.+ .|.+++|.++.+|.+|+|||.
T Consensus 84 ~idr--~~k--~V~t~~g~~~~YDkLilATGS 111 (793)
T COG1251 84 QIDR--ANK--VVTTDAGRTVSYDKLIIATGS 111 (793)
T ss_pred Eecc--Ccc--eEEccCCcEeecceeEEecCc
Confidence 9995 444 488999999999999999996
No 438
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.24 E-value=0.00047 Score=58.13 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+...||+|||+|.+||.+|.+|++.|+ +|+++|++..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCc---eEEEEccccc
Confidence 345899999999999999999999998 9999998754
No 439
>PLN02976 amine oxidase
Probab=97.22 E-value=0.00049 Score=68.95 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=33.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~ 90 (306)
.++|+|||||++|+++|++|.+.|+ +|+|+|+++..+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~vG 729 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRIG 729 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCCC
Confidence 5799999999999999999999998 999999986653
No 440
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.20 E-value=0.0021 Score=58.95 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=56.2
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~ 285 (306)
.+++++|+|+|.+|+++|..|.+.|.+|+++.+.+. .....+.+.+++.||+++.+..+. .
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~-~---------- 75 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT-L---------- 75 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc-c----------
Confidence 467899999999999999999999999999986532 233445667888899998876443 0
Q ss_pred EEeCCCCEEecCEEEEecCC
Q 021871 286 VKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 286 v~~~~G~~i~~d~vv~a~g~ 305 (306)
...+|.||.++|.
T Consensus 76 -------~~~~D~Vv~s~Gi 88 (480)
T PRK01438 76 -------PEDTDLVVTSPGW 88 (480)
T ss_pred -------cCCCCEEEECCCc
Confidence 1347777777764
No 441
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.19 E-value=0.01 Score=53.07 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=63.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc---c------------------------------cc---------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---Q------------------------------RL--------- 246 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~---~------------------------------~~--------- 246 (306)
+|+|||+|+.|.-.|..+++.|.+|.++++..... . ..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 58999999999999999999999999998764310 0 00
Q ss_pred --------cC-HHHHHHHHHHHHHcCCEEEcCceEEEEEeC--CCCcEEEEEe--CC-----C--CEEecCEEEEecCC
Q 021871 247 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG--SDGRVAAVKL--ED-----G--STIDADTVILLPYD 305 (306)
Q Consensus 247 --------~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~v~~v~~--~~-----G--~~i~~d~vv~a~g~ 305 (306)
++ ..+...+.+.+.+.|++++.++ +..++.. .++.+ .|+. .+ | .++++|.||-|+|.
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~i~a~~VIgADG~ 158 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPY-TLHYISSDSGGPSGTRCTLEVDAVIGADGA 158 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceE-EEEEeeccccccCCCccEEEeCEEEECCCc
Confidence 00 1223346666778899998885 6666421 12222 3432 22 3 37999999999985
No 442
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.17 E-value=0.0015 Score=59.03 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=60.1
Q ss_pred cCCeEEEEcCCHHHHHHHHHHH-hCCCcEEEEecCCcccccc---cC------HHHHHHHHHHHHHcCCEEEcCceEEEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQRL---FT------PSLAQRYEQLYQQNGVKFVKGASIKNL 275 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~-~~~~~v~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~gv~i~~~~~v~~i 275 (306)
.+++|+|||+|+.|+..|..+. ..+.+|+++.+.+.+.+-. .. ..+...+.+.+...+++++.+..|..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 4789999999999999999765 5788999999998865311 11 23445556666677888875443321
Q ss_pred EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+ +..+ .-...+|.||+|+|.
T Consensus 117 ----D-----vt~e-eL~~~YDAVIlAtGA 136 (506)
T PTZ00188 117 ----D-----LKME-ELRNHYNCVIFCCGA 136 (506)
T ss_pred ----c-----cCHH-HHHhcCCEEEEEcCC
Confidence 0 1111 112368999999985
No 443
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.16 E-value=0.0025 Score=55.43 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.++++|++++.+++|+++.. .++.+..|.+.+| .+.+|.||+|+|.
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~ 191 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGA 191 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCCh
Confidence 678888899999999999999999999996 5666767888887 8999999999984
No 444
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.13 E-value=0.0088 Score=56.19 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEE---eCCCC--EEecCEEEEecCC
Q 021871 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTVILLPYD 305 (306)
Q Consensus 251 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~---~~~G~--~i~~d~vv~a~g~ 305 (306)
+...+.+.+++.||+++.++.+.++.. +++++.++. +.+|+ .+.++.||+|||-
T Consensus 137 i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 137 ILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 344566667778999999999999875 467766665 34564 5889999999984
No 445
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.12 E-value=0.0027 Score=52.18 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=67.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccccc-----------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------------------------------------- 247 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~~----------------------------------------- 247 (306)
.|+|||+|..|+-.|..|+..+..|+++.++..+..+..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 589999999999999999999999999999876542210
Q ss_pred ---------------------CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecCEEEEecC
Q 021871 248 ---------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTVILLPY 304 (306)
Q Consensus 248 ---------------------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d~vv~a~g 304 (306)
.+.+. .+.+ +-....+|.++++|+.+..+ ++-+ .+.+++| +...+|.||++.|
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgms-alak-~LAtdL~V~~~~rVt~v~~~-~~~W-~l~~~~g~~~~~~d~vvla~P 157 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMS-ALAK-FLATDLTVVLETRVTEVART-DNDW-TLHTDDGTRHTQFDDVVLAIP 157 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchH-HHHH-HHhccchhhhhhhhhhheec-CCee-EEEecCCCcccccceEEEecC
Confidence 01122 2223 22345678889999999985 6666 5888666 4678999999876
No 446
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.09 E-value=0.0022 Score=60.15 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=63.1
Q ss_pred hcCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHHcCCEEEcCceE-EEE
Q 021871 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASI-KNL 275 (306)
Q Consensus 205 ~~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~gv~i~~~~~v-~~i 275 (306)
..+++|+|||+|+.|+-.|..++..+.+|+++.+.+.+... .++.++.+.-.+.+.+.|+++..++.+ ..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 35789999999999999999999999999999887654321 123344444555677889999988765 333
Q ss_pred EeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 276 EAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 276 ~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
... . +. ..+|.||+|+|.
T Consensus 215 ~~~------~--~~----~~~D~Vi~AtG~ 232 (564)
T PRK12771 215 TLE------Q--LE----GEFDAVFVAIGA 232 (564)
T ss_pred CHH------H--HH----hhCCEEEEeeCC
Confidence 210 0 11 237999999885
No 447
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0015 Score=57.82 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=30.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
...+||||||||.||..||...++.|- +.+++..+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga---~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGA---RTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCC---ceEEeeccc
Confidence 457999999999999999999999997 777776653
No 448
>PLN02985 squalene monooxygenase
Probab=97.08 E-value=0.012 Score=54.32 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=66.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCccc-------------------------------------------
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------------------------------- 243 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~------------------------------------------- 243 (306)
..+|+|||+|..|+-+|..|++.|.+|+++++.+...
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 3469999999999999999999999999998763210
Q ss_pred ------c-------------cccCHHHHHHHHHHHHHc-CCEEEcCceEEEEEeCCCCcEEEEEe--CCCCE--EecCEE
Q 021871 244 ------Q-------------RLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL--EDGST--IDADTV 299 (306)
Q Consensus 244 ------~-------------~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~v~~v~~--~~G~~--i~~d~v 299 (306)
+ ......+...+.+.+++. ||++..+ +++++.. +++.+.+|+. .+|++ +.+|.|
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence 0 000123445556666554 7998876 4666654 4555545654 46654 568999
Q ss_pred EEecCC
Q 021871 300 ILLPYD 305 (306)
Q Consensus 300 v~a~g~ 305 (306)
|.|.|.
T Consensus 201 VgADG~ 206 (514)
T PLN02985 201 VVCDGC 206 (514)
T ss_pred EECCCC
Confidence 999885
No 449
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.06 E-value=0.00053 Score=63.75 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=38.1
Q ss_pred HHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-C---EEecCEEEEecCC
Q 021871 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S---TIDADTVILLPYD 305 (306)
Q Consensus 255 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~---~i~~d~vv~a~g~ 305 (306)
+....++.|++|+.++.|.+|.. +++++++|+..++ + .+.++.||+|.|-
T Consensus 200 l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 200 LHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred hhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 44444466899999999999997 4678888887544 2 3589999999884
No 450
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.02 E-value=0.018 Score=52.28 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=65.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc---cc------------------------------cc-------
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---LQ------------------------------RL------- 246 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~---~~------------------------------~~------- 246 (306)
.-.|+|||+|+.|.-.|..|++.|.+|.++++.... +. ..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 346999999999999999999999999999876421 00 00
Q ss_pred ----------cC-HHHHHHHHHHHHHcCCEEEcCceEEEEEeCC--CCcEEEEEeCC-------C--CEEecCEEEEecC
Q 021871 247 ----------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLED-------G--STIDADTVILLPY 304 (306)
Q Consensus 247 ----------~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~v~~v~~~~-------G--~~i~~d~vv~a~g 304 (306)
++ ..+...+.+.+.+.|++++.+ .+++++..+ ++.+ .|++.+ | .++.+|.||-|.|
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPY-VIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcE-EEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 00 123345666677889999876 577776321 2332 344321 3 4799999999998
Q ss_pred C
Q 021871 305 D 305 (306)
Q Consensus 305 ~ 305 (306)
.
T Consensus 197 ~ 197 (450)
T PLN00093 197 A 197 (450)
T ss_pred c
Confidence 5
No 451
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.01 E-value=0.0021 Score=56.96 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=57.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc------cCHH------HHHHHHHHHHHcCCEEEcCceEEE
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN 274 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~------~~~~------~~~~~~~~~~~~gv~i~~~~~v~~ 274 (306)
.++++|||+|..|++.|..|++.|.+++++.+.+.+.+++ ++.. +.-.+.+.-...++++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 5689999999999999999999999999999999887652 1111 223455556667999999999999
Q ss_pred EEe
Q 021871 275 LEA 277 (306)
Q Consensus 275 i~~ 277 (306)
|.-
T Consensus 204 v~G 206 (622)
T COG1148 204 VSG 206 (622)
T ss_pred ecc
Confidence 985
No 452
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.00 E-value=0.00079 Score=62.49 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
...+|+||||+|.+|..+|.+|.+.++ +|+|+|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~---~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGL---SVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCC---eEEEEeCCCC
Confidence 456899999999999999999998787 9999999854
No 453
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.93 E-value=0.017 Score=54.83 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=32.4
Q ss_pred CEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 264 VKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 264 v~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
|+++.++.++++.. +++++.++.. .+|+ .+.++.||+|||-
T Consensus 166 v~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLK-DGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEE-ECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 99999999999875 4677767653 3554 5789999999994
No 454
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0028 Score=61.56 Aligned_cols=89 Identities=22% Similarity=0.313 Sum_probs=65.1
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHHcCCEEEcCceEEEEEe
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 277 (306)
.+++|+|||+|+.|+..|.+|.+.|-.|++..|.++...-. .+..+.+.-.+.+...||+++++++|-+--
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v- 1862 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV- 1862 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc-
Confidence 58899999999999999999999999999999998865321 233344445566788899999998774321
Q ss_pred CCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 278 GSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 278 ~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
.+ |+-.-+.|.||+|+|.
T Consensus 1863 ---------s~-d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1863 ---------SL-DELKKENDAIVLATGS 1880 (2142)
T ss_pred ---------cH-HHHhhccCeEEEEeCC
Confidence 11 1223456778888774
No 455
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.85 E-value=0.0023 Score=57.09 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=31.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~ 242 (306)
+|+|||+|..|++.|..|++.|.+|+++.+.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999976654
No 456
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.80 E-value=0.013 Score=54.66 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH-cCCEEEcCceEEEEEeCC-CCcEEEEEeC-CCC--EEecCEEEEecCC
Q 021871 251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGS-DGRVAAVKLE-DGS--TIDADTVILLPYD 305 (306)
Q Consensus 251 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~-~~~v~~v~~~-~G~--~i~~d~vv~a~g~ 305 (306)
+...+.+.+++ .||+++.++.+.++..++ ++++.+|... +|. .+.++.||+|||-
T Consensus 136 i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 136 IVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 44455555554 489999999999986533 3777777653 443 3789999999994
No 457
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.76 E-value=0.0025 Score=55.47 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=68.0
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCC-CCCcE-EEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCCh
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGM-ADGRL-CIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V-~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (306)
.+..|.|||.|+-|-..|+.|.+.-. ...+| .|++-. +....+ +|++ +.+...
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek----~nm~ki--------------LPey-------ls~wt~ 400 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK----YNMEKI--------------LPEY-------LSQWTI 400 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc----CChhhh--------------hHHH-------HHHHHH
Confidence 35789999999999999999987522 12233 222211 010111 1110 012333
Q ss_pred hHHhhcCeEEEeCCcEEEEeCCCC--EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 128 ~~~~~~~v~~~~~~~v~~v~~~~~--~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
..+++.|++++-+..|.++..... .+.++||..++.|.+|+|+|..|+.
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 446678999999988888876533 6788999999999999999999874
No 458
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.021 Score=51.01 Aligned_cols=97 Identities=23% Similarity=0.310 Sum_probs=60.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC---CcEEEEecCCccccc---------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQR--------------------------------------- 245 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~---~~v~~~~~~~~~~~~--------------------------------------- 245 (306)
.+|+|||+|.+|+.+|..|.+.. ..+.++.+.+.+..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998752 227777776654311
Q ss_pred -------------------ccCHHHHHHHHHHHHHcC---CEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEec
Q 021871 246 -------------------LFTPSLAQRYEQLYQQNG---VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLP 303 (306)
Q Consensus 246 -------------------~~~~~~~~~~~~~~~~~g---v~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~ 303 (306)
.+...+.+.+...++..- +.++. ++.+++...+++....+...+|....+|.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 001112233333333222 44443 3455555433444446888999889999999999
Q ss_pred CC
Q 021871 304 YD 305 (306)
Q Consensus 304 g~ 305 (306)
|.
T Consensus 161 gh 162 (474)
T COG4529 161 GH 162 (474)
T ss_pred cC
Confidence 85
No 459
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.74 E-value=0.014 Score=51.34 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=58.7
Q ss_pred HHHHHHHHhCCCcEEEEecCCcccc-cccCHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC-CEEecC
Q 021871 220 MEVAAAAVGWKLDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDAD 297 (306)
Q Consensus 220 ~e~a~~l~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G-~~i~~d 297 (306)
-|+...+.+.|.... ..++.++.| ..-..++.+.+.+.+++.||+++++++|++|+ +++ . .+.+.++ +.+.+|
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~-~v~~~~~~~~~~a~ 131 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-L-RFETPDGQSTIEAD 131 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-E-EEEECCCceEEecC
Confidence 456666777664433 445556655 22356889999999999999999999999994 333 3 5666543 469999
Q ss_pred EEEEecCC
Q 021871 298 TVILLPYD 305 (306)
Q Consensus 298 ~vv~a~g~ 305 (306)
.||+|||.
T Consensus 132 ~vIlAtGG 139 (376)
T TIGR03862 132 AVVLALGG 139 (376)
T ss_pred EEEEcCCC
Confidence 99999995
No 460
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.65 E-value=0.037 Score=52.16 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=32.2
Q ss_pred CEEEcCceEEEEEeCCCCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871 264 VKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTVILLPYD 305 (306)
Q Consensus 264 v~i~~~~~v~~i~~~~~~~v~~v~~~---~G~--~i~~d~vv~a~g~ 305 (306)
|+++.++.+..+...++|++.+|... +|+ .+.++.||+|||-
T Consensus 152 i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 152 VTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred cEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 78888888888765457888888764 343 4789999999984
No 461
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.59 E-value=0.044 Score=52.26 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=38.3
Q ss_pred HHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 255 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
+.+.+.+.||+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|||-
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 34556678999999999999886 5677767655 3564 3679999999984
No 462
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.003 Score=53.74 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCCCCCCCccccccccCCCCCCCCCCCcccccCCCCCcCChh
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (306)
.++++++|||||..++..|--++-.|- ++.++=+.+.. +.. |.++ ......+
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgs---ethlfiR~~kv-----------LR~----------FD~~----i~~~v~~ 238 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGS---ETHLFIRQEKV-----------LRG----------FDEM----ISDLVTE 238 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCC---eeEEEEecchh-----------hcc----------hhHH----HHHHHHH
Confidence 457899999999999999999999986 55554443331 111 1111 0234556
Q ss_pred HHhhcCeEEEeCCcEEEEeCCCC---EEEcCCCcEEecCcEEEeeCCCCcc
Q 021871 129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR 176 (306)
Q Consensus 129 ~~~~~~v~~~~~~~v~~v~~~~~---~v~~~~g~~~~~~~lila~G~~~~~ 176 (306)
.+...+++++.++.++.+..... .+....+.....|.|+.|+|-.|+.
T Consensus 239 ~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pnt 289 (478)
T KOG0405|consen 239 HLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNT 289 (478)
T ss_pred HhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCc
Confidence 67778999999998888865432 4555566555699999999988764
No 463
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.53 E-value=0.0013 Score=55.13 Aligned_cols=96 Identities=24% Similarity=0.266 Sum_probs=58.5
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhC-C-CcEEEEecCCccc--cc--ccCHHHHHHH-----HHHHHHcCCEEEcCceEEE
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENHLL--QR--LFTPSLAQRY-----EQLYQQNGVKFVKGASIKN 274 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~-~-~~v~~~~~~~~~~--~~--~~~~~~~~~~-----~~~~~~~gv~i~~~~~v~~ 274 (306)
+.-+++|+|+|.-|+-+|..+.+. + .+|-++++.+... |. .....+...- ...+--.|.+.+. ..|.+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~ 116 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKE 116 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHh
Confidence 456799999999999999988765 2 3566666654321 10 0111111100 0011112333333 46777
Q ss_pred EEeCCCCcEEEEEeCCCCEEecCEEEEecCCC
Q 021871 275 LEAGSDGRVAAVKLEDGSTIDADTVILLPYDQ 306 (306)
Q Consensus 275 i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~~ 306 (306)
+++. .+ .|.+.+|++|.+|.+|+|+|.|
T Consensus 117 f~P~-~N---~v~t~gg~eIsYdylviA~Giq 144 (446)
T KOG3851|consen 117 FNPD-KN---TVVTRGGEEISYDYLVIAMGIQ 144 (446)
T ss_pred cCCC-cC---eEEccCCcEEeeeeEeeeeece
Confidence 7763 33 4778999999999999999975
No 464
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.51 E-value=0.0095 Score=52.95 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 248 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
+..+...+.+.+++ |++++.+++|.+++. +++.+ .|++.+|+.+.+|.||+|+|.
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~-~~~~~-~v~t~~g~~~~a~~vV~a~G~ 188 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLER-DGEGW-QLLDANGEVIAASVVVLANGA 188 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEE-cCCeE-EEEeCCCCEEEcCEEEEcCCc
Confidence 56778888888888 999999999999986 34444 688899877999999999984
No 465
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.51 E-value=0.053 Score=50.98 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=38.0
Q ss_pred HHHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 253 QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 253 ~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
..+.+.+.+ .+|+++.++.++++.. +++++.++.. .+|+ .+.++.||+|||-
T Consensus 136 ~~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 136 HTLFQTSLTYPQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHhcCCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 344444444 4899999999999886 5677777653 4564 5789999999984
No 466
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.013 Score=51.98 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=62.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc-cc-------------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL------------------------------------------- 243 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~-~~------------------------------------------- 243 (306)
-.|+|||+|..|+|.|...++.|.+.+++...-. +.
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~LNr 108 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVLNR 108 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHhhc
Confidence 3689999999999999999999988887765421 11
Q ss_pred ---ccccCHH-------HHHHHHHHHH-HcCCEEEcCceEEEEEeCCC----CcEEEEEeCCCCEEecCEEEEecCC
Q 021871 244 ---QRLFTPS-------LAQRYEQLYQ-QNGVKFVKGASIKNLEAGSD----GRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 244 ---~~~~~~~-------~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~----~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
|..+.+. +...+++.+. -.+.+|..+. |.++...+. .++.+|.+.+|..+.++.||+.||.
T Consensus 109 s~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGT 184 (679)
T KOG2311|consen 109 SKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGT 184 (679)
T ss_pred cCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhh-hhheeeccCCCCceEEEEEEEecCcEeccceEEEeecc
Confidence 1111110 1111222221 2356666663 544433222 2488999999999999999999984
No 467
>PLN02815 L-aspartate oxidase
Probab=96.47 E-value=0.036 Score=52.16 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=37.2
Q ss_pred HHHHHHHHHHc-CCEEEcCceEEEEEeCCCC---cEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 252 AQRYEQLYQQN-GVKFVKGASIKNLEAGSDG---RVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 252 ~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~---~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
...+.+.+++. ||+++.++.++++..++++ ++.++.. .+|+ .+.++.||+|||-
T Consensus 158 ~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG 220 (594)
T PLN02815 158 ERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGG 220 (594)
T ss_pred HHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCc
Confidence 34444555544 8999999999987743343 2667764 3554 4689999999984
No 468
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.47 E-value=0.062 Score=51.12 Aligned_cols=98 Identities=21% Similarity=0.317 Sum_probs=66.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcccc---------------------------------------c-
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ---------------------------------------R- 245 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~-~~~v~~~~~~~~~~~---------------------------------------~- 245 (306)
.-.|+|||+|+.|+-+|..|++. +.++.++.+.+.... .
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35799999999999999999995 888888887654210 0
Q ss_pred ----c---------------------cC-HHHHHHHHHHHHHcC--CEEEcCceEEEEEeCCCC--cEEEEEeC------
Q 021871 246 ----L---------------------FT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG--RVAAVKLE------ 289 (306)
Q Consensus 246 ----~---------------------~~-~~~~~~~~~~~~~~g--v~i~~~~~v~~i~~~~~~--~v~~v~~~------ 289 (306)
. .+ ..+.+.+.+.+.+.+ +++..++++++++.++++ .| .|++.
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~ 190 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEH 190 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCC
Confidence 0 00 013334555666655 578889999999864322 23 34443
Q ss_pred CC--CEEecCEEEEecCC
Q 021871 290 DG--STIDADTVILLPYD 305 (306)
Q Consensus 290 ~G--~~i~~d~vv~a~g~ 305 (306)
+| +++.+|+||-|=|.
T Consensus 191 ~g~~~tv~A~~lVGaDGa 208 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGA 208 (634)
T ss_pred CCceEEEEeCEEEECCCC
Confidence 35 47999999998774
No 469
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.46 E-value=0.054 Score=50.97 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=37.2
Q ss_pred HHHHHHHH-cCCEEEcCceEEEEEeCCCCcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 254 RYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 254 ~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
.+.+.+.+ .+|+++.++.++++.. +++++.+|.. .+|+ .+.++.||+|||-
T Consensus 138 ~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 138 TLFQTSLKYPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHhhcCCCcEEEeCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 34444444 4899999999999886 5677766543 4664 6889999999984
No 470
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.44 E-value=0.0061 Score=59.43 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=32.0
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~ 239 (306)
.+++|+|||+|+.|+..|..|+..|.+|+++.+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999875
No 471
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.43 E-value=0.042 Score=52.05 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=32.0
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~ 240 (306)
...+|+|||+|..|.-+|..|++.+.+|+++++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 46789999999999999999999999999998864
No 472
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.25 E-value=0.0053 Score=53.44 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=31.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCC-CCCcEEEeccCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA 87 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~-~~~~V~vie~~~ 87 (306)
...+||+|||||+.|++.|..|..... .+.+|.++|-.+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 347899999999999999999985422 356899999773
No 473
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.23 E-value=0.0069 Score=46.58 Aligned_cols=32 Identities=16% Similarity=0.396 Sum_probs=29.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
+|+|||||..|.++|..|+++|+ +|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~---~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH---EVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE---EEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---EEEEEeccH
Confidence 58999999999999999999998 999999875
No 474
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.017 Score=49.26 Aligned_cols=99 Identities=28% Similarity=0.343 Sum_probs=73.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEE-ecC----------Ccc--cccccCHHHHHHHHHHHHHcCCEEEcCceEE
Q 021871 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTII-FPE----------NHL--LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273 (306)
Q Consensus 207 ~~~v~viG~g~~a~e~a~~l~~~~~~v~~~-~~~----------~~~--~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~ 273 (306)
+-.|+|+|+|+.+...|-+.++.|.+.=++ .|- ..+ .+....+.+...+++..+...|+++...+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 446999999999998888888776543222 110 111 1222467899999999999999999988888
Q ss_pred EEEeCC-CCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 274 NLEAGS-DGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 274 ~i~~~~-~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
++++.. .+...+|++++|-.+.+..+|++||-
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA 323 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGA 323 (520)
T ss_pred cceecCCCCccEEEEecCCceeccceEEEecCc
Confidence 887522 23344899999999999999999984
No 475
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.0068 Score=49.54 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=31.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
++++|||+|..|.+.|..|.+.|+ +|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~---~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH---NVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC---ceEEEEcCHH
Confidence 479999999999999999999999 9999998754
No 476
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.18 E-value=0.0061 Score=56.16 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 48 ~~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
....||.+|||||-||...|-+|.+. ++.+|+++|+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn--~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN--PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC--CCceEEEEecCCCC
Confidence 34579999999999999999999987 35699999998664
No 477
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.12 E-value=0.042 Score=49.22 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=39.2
Q ss_pred HHHHHHHHHHH-cCCEEEcCceEEEEEeCCCC-cEEEEEeCCC----CEEecCEEEEecCC
Q 021871 251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG-RVAAVKLEDG----STIDADTVILLPYD 305 (306)
Q Consensus 251 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~-~v~~v~~~~G----~~i~~d~vv~a~g~ 305 (306)
+...+.+.+++ .+|+++.++.+..+-. +++ .+.+|.+.+. ..+.++.||+|||-
T Consensus 135 I~~~L~~~v~~~p~I~v~e~~~a~~li~-~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 135 IMTALLKKVRNRPNITVLEGAEALDLII-EDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhhhhh-cCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 45556666665 6999999998888775 444 5547776433 36889999999984
No 478
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.10 E-value=0.011 Score=45.31 Aligned_cols=35 Identities=34% Similarity=0.459 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~ 86 (306)
.+.++|+|||||..|..-|..|.+.|. +|+|++++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga---~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA---FVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEcCc
Confidence 456899999999999999999999998 99999654
No 479
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.09 E-value=0.011 Score=47.59 Aligned_cols=36 Identities=33% Similarity=0.578 Sum_probs=32.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+.++|+|||||.+|..-+..|.+.|- +|+|++++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga---~VtVvsp~~~ 43 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA---QLRVIAEELE 43 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC---EEEEEcCCCC
Confidence 45799999999999999999999997 9999998643
No 480
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.09 E-value=0.014 Score=50.73 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=31.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 52 ~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+++.|||.|..||+.|.-|++.|+ +|+.+|.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH---eVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH---EVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC---eEEEEeCCHH
Confidence 378999999999999999999999 9999998755
No 481
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.07 E-value=0.028 Score=54.71 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=29.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCc
Q 021871 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH 241 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~--~~~v~~~~~~~~ 241 (306)
+|+|||+|..|+-.|..|++. +.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999987 789999998765
No 482
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.06 E-value=0.042 Score=47.66 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=58.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----cc----------------------------------------
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----LL---------------------------------------- 243 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~~----~~---------------------------------------- 243 (306)
..|.|||+|..|..+|..|++.|.+|++++|.=. +.
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~ 125 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKE 125 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCce
Confidence 3489999999999999999999999999998622 11
Q ss_pred ----------------ccccCHHHHHHHHHHH-HHcCCEEEcCceEEEEEeCCCCcEEEEEeCCC
Q 021871 244 ----------------QRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 291 (306)
Q Consensus 244 ----------------~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G 291 (306)
..+....+...+.+.. ..-||++..++ |.++-+ ++|.|.+|+..+.
T Consensus 126 v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLle-e~gvvkGV~yk~k 188 (509)
T KOG1298|consen 126 VDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLE-EEGVVKGVTYKNK 188 (509)
T ss_pred eeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHh-ccCeEEeEEEecC
Confidence 0112233455555554 34589999885 666664 6778889888664
No 483
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.00 E-value=0.2 Score=47.45 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=35.3
Q ss_pred HHHHcCCEEEcCceEEEEEeCCC--CcEEEEEe---CCCC--EEecCEEEEecCC
Q 021871 258 LYQQNGVKFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTVILLPYD 305 (306)
Q Consensus 258 ~~~~~gv~i~~~~~v~~i~~~~~--~~v~~v~~---~~G~--~i~~d~vv~a~g~ 305 (306)
.+++.+++++.++.++++..+++ |++.+|.. .+|+ .+.++.||+|||.
T Consensus 135 ~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG 189 (614)
T TIGR02061 135 AAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGG 189 (614)
T ss_pred HHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCc
Confidence 34455678999999999875332 67878764 3554 4789999999985
No 484
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.98 E-value=0.0068 Score=42.95 Aligned_cols=36 Identities=31% Similarity=0.581 Sum_probs=30.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
.+.++|+|||||..|..-+..|.+.|- +|+|+.++.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA---~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA---KVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB---EEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC---EEEEECCch
Confidence 356899999999999999999999986 999999874
No 485
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.97 E-value=0.16 Score=47.41 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=36.9
Q ss_pred HHHHHHHHc-CCEEEcCceEEEEEeCC-----CCcEEEEEeC---CCC--EEecCEEEEecCC
Q 021871 254 RYEQLYQQN-GVKFVKGASIKNLEAGS-----DGRVAAVKLE---DGS--TIDADTVILLPYD 305 (306)
Q Consensus 254 ~~~~~~~~~-gv~i~~~~~v~~i~~~~-----~~~v~~v~~~---~G~--~i~~d~vv~a~g~ 305 (306)
.+.+.+.+. ||+++.++.++.+..++ ++++.+|... +|+ .+.++.||+|||-
T Consensus 143 ~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 205 (536)
T PRK09077 143 TLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGG 205 (536)
T ss_pred HHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCC
Confidence 344445444 89999999988876432 3777787653 454 4789999999984
No 486
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.011 Score=53.85 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=31.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
+|+|||.|.+|+++|+.|.++|+ +|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~---~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW---EVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC---EEEEECCCCch
Confidence 58999999999999999999998 99999987653
No 487
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.85 E-value=0.023 Score=36.77 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.1
Q ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEecCCccccc
Q 021871 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245 (306)
Q Consensus 212 viG~g~~a~e~a~~l~~~~~~v~~~~~~~~~~~~ 245 (306)
|||+|.+|+-.|..|++.+.+|+++++++.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 7999999999999999999999999999887643
No 488
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.013 Score=48.87 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.8
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcC----CCCCcEEEeccCCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHG----MADGRLCIVSKEAY 88 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g----~~~~~V~vie~~~~ 88 (306)
++.+|+|||+|..||+.|..+.+.. .|..+|+|++.+..
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 4579999999999999999888843 46678999986543
No 489
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.72 E-value=0.02 Score=45.97 Aligned_cols=35 Identities=40% Similarity=0.651 Sum_probs=31.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~ 86 (306)
...++|+|||||-.|...|..|.+.|. +|+|++++
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga---~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA---HIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEcCC
Confidence 346799999999999999999999997 99999875
No 490
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.014 Score=49.34 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=31.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
...|.|||||.||-.||++++++|. .|.+.|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv---~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGV---PVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCC---cEEEEEcccc
Confidence 4579999999999999999999999 8999997755
No 491
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.58 E-value=0.023 Score=50.91 Aligned_cols=52 Identities=29% Similarity=0.345 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecCC
Q 021871 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPYD 305 (306)
Q Consensus 252 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g~ 305 (306)
...+.......|.+|+++++|++|+. +++++ .|.+.+|++++||.||+|+|.
T Consensus 212 ~~~~~~~~~~~g~~i~l~~~V~~I~~-~~~~v-~v~~~~g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 212 SLALALAAEELGGEIRLNTPVTRIER-EDGGV-TVTTEDGETIEADAVISAVPP 263 (450)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEEE-ESSEE-EEEETTSSEEEESEEEE-S-H
T ss_pred hHHHHHHHhhcCceeecCCcceeccc-ccccc-ccccccceEEecceeeecCch
Confidence 34444555556779999999999997 45666 699999999999999999873
No 492
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.57 E-value=0.046 Score=47.71 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=57.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCccc--ccc---------------------------------------
Q 021871 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLL--QRL--------------------------------------- 246 (306)
Q Consensus 209 ~v~viG~g~~a~e~a~~l~~~~-~~v~~~~~~~~~~--~~~--------------------------------------- 246 (306)
.++.||.|+..+-+|..+.+.+ .++.++.+.+.+. +.+
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4789999999999999998876 6788888776532 100
Q ss_pred ------c---CHHHHHHHHHHHHHcCCEEEcCceEEEEEeCCCC--cEEEEEeC----CCCEEecCEEEEecCC
Q 021871 247 ------F---TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG--RVAAVKLE----DGSTIDADTVILLPYD 305 (306)
Q Consensus 247 ------~---~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~v~~v~~~----~G~~i~~d~vv~a~g~ 305 (306)
+ -.++.+.+....++..-.+..+++|++|+..+++ ....|.+. +++++.++.||++||.
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 0 0123334444444445448889999999975443 22356662 3468999999999985
No 493
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.55 E-value=0.019 Score=42.79 Aligned_cols=37 Identities=19% Similarity=0.523 Sum_probs=32.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCCC
Q 021871 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (306)
Q Consensus 51 ~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~~ 89 (306)
..+|+|||+|-.|..+|..|++.|.. +++++|.+...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~ 38 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVE 38 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCccee
Confidence 36899999999999999999999985 89999987553
No 494
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.54 E-value=0.022 Score=51.82 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=32.2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 50 ~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
+.++|+|+|+|..|+.+|..|++.|+ +|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~---~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA---KVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 45789999999999999999999998 999999874
No 495
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.52 E-value=0.031 Score=41.70 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCC
Q 021871 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (306)
Q Consensus 49 ~~~~~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~ 87 (306)
-..++++|||+|-+|-.++++|.+.|.. +|+|+.|..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt~ 46 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAK--EITIVNRTP 46 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESSH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECCH
Confidence 3468999999999999999999999984 699998753
No 496
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.47 E-value=0.048 Score=48.93 Aligned_cols=52 Identities=25% Similarity=0.421 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCEEEcCceEEEEEeCCCCcEEEEEeCCCCEEecCEEEEecC
Q 021871 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTVILLPY 304 (306)
Q Consensus 252 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~v~~v~~~~G~~i~~d~vv~a~g 304 (306)
.+.+.+.+++.|++|+++++|++|+..+++ +..+...+|+.+.+|.||+|++
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~g~~~~~d~vi~a~p 251 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSGGETLPADAVVLAVP 251 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecCCccccCCEEEEcCC
Confidence 344777888889999999999999975444 3222234677899999999986
No 497
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.34 E-value=0.052 Score=43.57 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=30.4
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEec
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~ 238 (306)
.+++++|||+|..|...+..|.+.+.+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 478999999999999999999999999999965
No 498
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.31 E-value=0.029 Score=44.18 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=28.5
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCCCCcEEEeccCCC
Q 021871 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (306)
Q Consensus 53 ~vvIIGgG~aGl~aA~~L~~~g~~~~~V~vie~~~~ 88 (306)
+|.|||+|.-|...|..++..|+ +|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~---~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY---EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS---EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC---cEEEEECChH
Confidence 58999999999999999999999 9999998754
No 499
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.29 E-value=0.061 Score=40.12 Aligned_cols=34 Identities=35% Similarity=0.407 Sum_probs=30.7
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecC
Q 021871 206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPE 239 (306)
Q Consensus 206 ~~~~v~viG~g~~a~e~a~~l~~~~~~-v~~~~~~ 239 (306)
.+++++|+|+|..|..++..|...+.+ ++++.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 478999999999999999999999866 9999885
No 500
>PTZ00367 squalene epoxidase; Provisional
Probab=95.20 E-value=0.28 Score=45.93 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=30.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 021871 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (306)
Q Consensus 208 ~~v~viG~g~~a~e~a~~l~~~~~~v~~~~~~~ 240 (306)
-+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 469999999999999999999999999999875
Done!