BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021872
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL
PE=2 SV=2
Length = 358
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 123/157 (78%), Gaps = 9/157 (5%)
Query: 29 GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 88
GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct: 23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
Query: 89 LQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQME 148
LQK+RLGKQ KE ++S A + D + SS+ M++++ N+ +QME
Sbjct: 83 LQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQME 133
Query: 149 VQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 185
VQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct: 134 VQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170
>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
Length = 413
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 9/150 (6%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQAC 99
K R+RWT ELH+ FV+AV QLGG ++ATPK +++ + GLT+YH+KSHLQKYR +
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK- 289
Query: 100 KETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEV 159
ET+E E Q+ TS + + D ++T+ALR+QMEVQ+RLHEQLE+
Sbjct: 290 PETSE------VTGEPQEK--KMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEI 341
Query: 160 QRRLQLRIEAQGKYLQSILEKACKALNDQA 189
QR LQL+IE QG+YLQ + EK K ++++
Sbjct: 342 QRSLQLQIEKQGRYLQMMFEKQQKIQDNKS 371
>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis
thaliana GN=At1g14600 PE=2 SV=2
Length = 255
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 41/55 (74%)
Query: 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
P PRLRWT ELH FV AV LGG KATPK +++ M VKGLT+ H+KSHLQ YR
Sbjct: 22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1
SV=1
Length = 403
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 43/60 (71%)
Query: 41 PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
PR+RWT+ LH RFV AV LGG ++ATPK+++ M VK LTL H+KSHLQ YR K K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279
>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2
PE=2 SV=1
Length = 388
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 41 PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
PR+RWT LH RFV AV LGG ++ATPK+++ M VK LTL H+KSHLQ YR K
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK---- 269
Query: 101 ETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQ 160
TT+ + S ++ + GSS +++ D N + +E L +E L +
Sbjct: 270 -TTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSRDSEELTNPLEKSNGLWTNSSGE 328
Query: 161 RRLQLRIEAQGKYLQSILE 179
RL GK + ++ E
Sbjct: 329 ARL------HGKLIDNVAE 341
>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica
GN=RL9 PE=2 SV=2
Length = 532
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 43/60 (71%)
Query: 41 PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
PR+RWT+ LH RFV AV LGG ++ATPK+++ M VK LTL H+KSHLQ YR K K
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384
>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3
PE=2 SV=1
Length = 322
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Query: 41 PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
PR+RWT LH FV AV LGG ++ATPK+++ M V+ LTL H+KSHLQ YR K K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224
Query: 101 ETT-------ENSKDVSCVAESQD-TGSSTTSST 126
TT EN V+ E+++ TG SS+
Sbjct: 225 PTTSSGQSDCENGSQVNSEREARNLTGLWNNSSS 258
>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4
PE=1 SV=1
Length = 276
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 41 PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 96
PR+RWT+ LH FV AV LGG ++ATPK+++ M VK LTL H+KSHLQ YR K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
KPR+ W+ ELH +FV AV QLG DKA PK I+ M V GLT ++ SHLQKYR+
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 37 TDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
T KPR+ W+ ELH +FV AV QLG DKA PK I+ M ++GLT ++ SHLQKYRL
Sbjct: 191 TRKKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRL 247
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
KPR+ W+ ELH +FV AV QLG +KA PK I+ M V GLT ++ SHLQKYR+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 7/67 (10%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTM----GVKGLTLYHLKSHLQKYRLG 95
KPR++WT ELH +F AV ++G +KA PKTI++ M V+GLT ++ SHLQKYR
Sbjct: 211 KPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYR-- 268
Query: 96 KQACKET 102
Q+ K+T
Sbjct: 269 -QSSKKT 274
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2
SV=1
Length = 386
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
KP++ WT ELH +FV AV QLG DKA P I+ M VK LT +++ SHLQKYR
Sbjct: 147 KPKVDWTPELHRKFVQAVEQLGV-DKAVPSRILEIMNVKSLTRHNVASHLQKYR 199
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKE 101
R+ W+ ELH +FV+AV Q+G KA PK I+ M V LT ++ SHLQKYRL
Sbjct: 195 RVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL----YLS 250
Query: 102 TTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQ 138
E K++ C + S+ + N GYQ
Sbjct: 251 RLEKGKELKCYSGGVKNADSSPKDVEV-----NSGYQ 282
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
K R+ W+ ELH +FV+AV +LG DKA PK I+ M V GL+ ++ SHLQK+RL
Sbjct: 200 KSRVVWSIELHQQFVNAVNKLG-IDKAVPKRILELMNVPGLSRENVASHLQKFRL 253
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica
GN=GLK1 PE=2 SV=1
Length = 455
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 43 LRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
+ WT ELH RFV AV QLG DKA P I+ MG+ LT +++ SHLQKYR
Sbjct: 183 VDWTPELHRRFVQAVEQLG-IDKAVPSRILEIMGIDSLTRHNIASHLQKYR 232
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica
GN=GLK2 PE=2 SV=1
Length = 539
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
K ++ WT ELH RFV AV QLG DKA P I+ MG++ LT +++ SHLQKYR
Sbjct: 215 KVKVDWTPELHRRFVQAVEQLGI-DKAVPSRILELMGIECLTRHNIASHLQKYR 267
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2
SV=2
Length = 420
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
K ++ WT ELH RFV+AV QLG DKA P I+ MGV LT +++ SHLQKYR
Sbjct: 153 KVKVDWTPELHRRFVEAVEQLGV-DKAVPSRILELMGVHCLTRHNVASHLQKYR 205
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG-KQA 98
K RL WT +LH +F+ AV LG DKA PK I+ M VK LT + SHLQKYR+ K++
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKS 256
Query: 99 CKETTENSKDVSCVA 113
T+++ +S A
Sbjct: 257 IPTTSKHGATLSSTA 271
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG-KQA 98
K RL WT +LH +F+ AV LG DKA PK I+ M VK LT + SHLQKYR+ K++
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKS 256
Query: 99 CKETTENSKDVSCVA 113
T+++ +S A
Sbjct: 257 IPTTSKHGATLSSTA 271
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTI---MRTMGVKGLTLYHLKSHLQKYRLG 95
KPR+ WT ELH +F++A+ +GG +KA PK + ++ M ++G+T ++ SHLQK+R+
Sbjct: 215 KPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKHRIN 273
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
K R+ WT ELH +FV AV QLG +KA PK I+ M V+ LT ++ SHLQK+RL
Sbjct: 195 KQRVVWTVELHKKFVAAVNQLGY-EKAMPKKILDLMNVEKLTRENVASHLQKFRL 248
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG 95
T KPR+ WT ELH++F+ AV L G ++A PK I+ M V LT ++ SHLQK+R+
Sbjct: 179 TAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRV- 236
Query: 96 KQACKETTENS 106
A K+ ++++
Sbjct: 237 --ALKKVSDDA 245
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
K +++WT LHD F+ A+ +G DKA PK I+ M V LT ++ SHLQKYR+
Sbjct: 222 KKKIQWTDSLHDLFLQAIRHIGL-DKAVPKKILAFMSVPYLTRENVASHLQKYRI 275
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
++ WT ELH +FV AV QLG D+A P I+ M V LT +++ SHLQK+R
Sbjct: 298 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVGTLTRHNVASHLQKFR 348
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 28 PGDACLVLTTDPKPR-LRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLK 86
P D L+ PK + + WT L D F+ A+ +G DK PK I+ M V LT ++
Sbjct: 212 PSDDGESLSQPPKKKKIWWTNPLQDLFLQAIQHIGY-DKVVPKKILAIMNVPYLTRENVA 270
Query: 87 SHLQKYRL 94
SHLQKYRL
Sbjct: 271 SHLQKYRL 278
>sp|Q9C9F6|APRR6_ARATH Putative two-component response regulator-like APRR6 OS=Arabidopsis
thaliana GN=APRR6 PE=3 SV=2
Length = 755
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 45 WTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
W +E H +F+ A++ LG D PK+I+ M LT + SHLQKY+
Sbjct: 227 WNSERHMKFIAAISILGEED-FRPKSILEIMNDPNLTHRQVGSHLQKYK 274
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 90
K R+ W ELH F++AV LG ++A PK I+ M V ++ ++ SHLQ
Sbjct: 223 KRRVVWDEELHQNFLNAVDFLG-LERAVPKKILDVMKVDYISRENVASHLQ 272
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 38.1 bits (87), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 3 SAIHSLPLDGGHPDFQGGPLDGTNLP----GDACLVLTTDPKPRLR-----------WTA 47
S H LP+ P F P T +P + + DP ++R WT
Sbjct: 7 SQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKSRENWTE 66
Query: 48 ELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ 97
+ HD+F++A+ L D K I +G K T+ ++SH QKY L Q
Sbjct: 67 QEHDKFLEAL-HLFDRDW---KKIKAFVGSK--TVIQIRSHAQKYFLKVQ 110
>sp|Q69ZM6|STK36_MOUSE Serine/threonine-protein kinase 36 OS=Mus musculus GN=Stk36 PE=1
SV=3
Length = 1316
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 34 VLTTDPKPRLRWTAELHDRF----VDAVTQLGGPDKATPKTIM---RTMGVKGLTLYHLK 86
+LT DP+ RL W LH F V +T+ G D TP T +K + L
Sbjct: 234 LLTKDPRQRLSWPDLLHHPFIAGRVTIITEPAGSDLGTPFTSRLPPELQVLKDEQAHRLA 293
Query: 87 SHLQKYRLGKQACKETTENSKDVSCVAESQDTGSS 121
+ R+ +QACK E +K E Q+ GS+
Sbjct: 294 PKGNQSRILRQACKLMAEEAKQ----KEDQNAGSA 324
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 25 TNLPGDACLVLTTDP----KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGL 80
TN G+ ++ T P K R RWT E H+RF++A+ G +A K I + K
Sbjct: 3 TNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYG---RAWQK-IEEHVATK-- 56
Query: 81 TLYHLKSHLQKY 92
T ++SH QK+
Sbjct: 57 TAVQIRSHAQKF 68
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 25 TNLPGDACLVLTTDP----KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGL 80
TN G+ L P K R RWT + H+RF++A+ G + I +G K
Sbjct: 3 TNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYG----RAWQRIEEHIGTK-- 56
Query: 81 TLYHLKSHLQKY--RLGKQA 98
T ++SH QK+ +L K+A
Sbjct: 57 TAVQIRSHAQKFFTKLEKEA 76
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 45 WTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
WT E H RF++A+++ G D K+I + + + T +++H QKY L
Sbjct: 175 WTPEEHSRFIEALSKYGHKDV---KSISQYVSTRNPT--QVRTHAQKYFL 219
>sp|Q5RAJ5|STK36_PONAB Serine/threonine-protein kinase 36 OS=Pongo abelii GN=STK36 PE=2
SV=1
Length = 1315
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 34 VLTTDPKPRLRWTAELHDRF----VDAVTQLGGPDKATPKT 70
+LT DP+ RL W L+ F V +T+ GPD TP T
Sbjct: 234 LLTKDPRQRLSWPDLLYHPFIAGHVTIITETAGPDLGTPFT 274
>sp|A2BTQ6|MNMG_PROMS tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain AS9601) GN=mnmG PE=3
SV=1
Length = 655
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 90 QKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEV 149
+K+RL K T E SK + S+ GS+T + + + PN + ++ ++ +
Sbjct: 493 EKFRLNNTRLKNTDEISKKIELETGSKIKGSTT---LKELLKRPN--FHYSDLIKYNLNE 547
Query: 150 QR---RLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL----NDQAIVAAGLEAAREEL 202
+ + E +E+ + + ++ Q ++ I ++CK+L N + I LE ARE L
Sbjct: 548 RNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIETLSLE-ARENL 606
Query: 203 SELAIKVSNDCQGMVPLENIKMPSIS--ELAAALESKNASTIPARIGDCSVESCLTS 257
+++ K D K+P +S +L A L I + VE L+S
Sbjct: 607 NKIKPKNFGDAS--------KIPGVSKADLTALLVWLKIREIKKEKANIFVEKKLSS 655
>sp|Q9NRP7|STK36_HUMAN Serine/threonine-protein kinase 36 OS=Homo sapiens GN=STK36 PE=1
SV=2
Length = 1315
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 34 VLTTDPKPRLRWTAELHDRF----VDAVTQLGGPDKATPKT 70
+LT DP+ RL W L+ F V +T+ GPD TP T
Sbjct: 234 LLTKDPRQRLSWPDLLYHPFIAGHVTIITEPAGPDLGTPFT 274
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 44 RWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETT 103
WT+E H++F++AV Q G D ++T + +++H+ Y L Q E
Sbjct: 656 HWTSEEHNKFLEAVQQFGIKDYHAIAKFVQTRN-----HHQVRTHVNTY-LKNQKKAEAA 709
Query: 104 ENSKDVSC 111
+S VS
Sbjct: 710 TSSTQVST 717
>sp|P97386|DNLI3_MOUSE DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=2
Length = 1015
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 82 LYHLKSHLQKYRLGKQACKETTE--NSKDVSCVAE--SQDTGSSTTSSTRMVAQDPNDGY 137
L HL S L K +QA ++ + D+ C+ D ++ + + A DPN Y
Sbjct: 386 LLHL-SKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPN-AY 443
Query: 138 QVTEALR-VQMEVQRRLHEQLEVQ----RRLQLRIEAQGKY-LQSILEKACKAL 185
+ +A R +Q V+R LH + EV+ RR LR++A +Q +L +ACK++
Sbjct: 444 EAFKASRNLQDVVERVLHNEQEVEKDPGRRRALRVQASLMTPVQPMLAEACKSI 497
>sp|Q5ZQU0|SNED1_RAT Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus
norvegicus GN=Sned1 PE=2 SV=2
Length = 1403
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 202 LSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESC------- 254
L A+ V + VPL+N + P + LA L N+ + G CS ++C
Sbjct: 1263 LPSRAVTVRSQPTTPVPLKNTEAPEQARLALQLPKNNSKDTESTPGSCSEDTCQNGGTCV 1322
Query: 255 --LTSTSSPVSPMGLGSQAA-AMKKRPRP---LFGNGESLPL-EGNMRQEV 298
+ S P G A +K PRP LF +S P+ EG++ V
Sbjct: 1323 PGANAHSCDCRPGFKGRHCELACEKVPRPCTRLFSETKSFPVWEGDVCHHV 1373
>sp|Q55563|Y163_SYNY3 Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=sll0163 PE=4 SV=1
Length = 1693
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 122 TTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKA 181
+ S+ ++A P D Q E L ++E EQ+ Q+ +++ Q LEK
Sbjct: 887 SKSNPNLIAPSPGDRQQGNEDLIAELEAGSSAEEQVVAQKLKAAQLQYQKLVAGINLEKQ 946
Query: 182 CKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLEN--IKMPSISELAAALESKNA 239
C+ + Q +V LEA A+K D Q +V E ++ PS++ +
Sbjct: 947 CQFILKQFLVYP-LEALLA-----AVKTGQDLQKLVTPETPLVQYPSLAPWLS------L 994
Query: 240 STIPARIGDCS 250
+I ARI +C+
Sbjct: 995 HSILARINECN 1005
>sp|Q9SJZ6|MED18_ARATH Mediator of RNA polymerase II transcription subunit 18
OS=Arabidopsis thaliana GN=MED18 PE=1 SV=1
Length = 219
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 142 ALRVQMEVQRRL-HEQLEVQRRLQLRIEAQGKYLQSILEKACK--ALNDQAIVAAGLE-- 196
ALR+ + +L HE L+V + A S + K K A+++ V G++
Sbjct: 100 ALRMFYALGYKLDHELLKVGFAFHFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIV 159
Query: 197 -----AAREELSELAIKVSNDCQGMVPLENIKMPSIS 228
A E SE+A VS+ C+ + PL ++ PSIS
Sbjct: 160 DVTAPATSENYSEVAAAVSSFCEFLAPLVHLSKPSIS 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,630,039
Number of Sequences: 539616
Number of extensions: 4582700
Number of successful extensions: 11092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 11010
Number of HSP's gapped (non-prelim): 128
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)