Query 021872
Match_columns 306
No_of_seqs 211 out of 399
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 10:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 5.5E-30 1.9E-34 193.8 7.1 62 36-98 1-62 (64)
2 2yum_A ZZZ3 protein, zinc fing 90.1 0.53 1.8E-05 34.7 5.4 55 39-96 5-62 (75)
3 2yus_A SWI/SNF-related matrix- 87.6 1.4 4.8E-05 33.6 6.3 50 39-94 15-64 (79)
4 2cu7_A KIAA1915 protein; nucle 86.9 1.9 6.5E-05 31.7 6.5 52 39-96 6-57 (72)
5 1x41_A Transcriptional adaptor 86.1 2.7 9.4E-05 29.8 6.8 51 39-94 5-55 (60)
6 2xag_B REST corepressor 1; ami 85.4 1.4 4.8E-05 44.1 6.7 54 39-98 377-430 (482)
7 2hzd_A Transcriptional enhance 85.0 1.2 4.1E-05 35.0 4.8 58 38-97 2-76 (82)
8 2iw5_B Protein corest, REST co 82.3 2.2 7.4E-05 39.3 6.0 55 37-97 128-182 (235)
9 2cqq_A RSGI RUH-037, DNAJ homo 81.3 2.1 7.2E-05 32.2 4.7 48 42-95 8-58 (72)
10 2cqr_A RSGI RUH-043, DNAJ homo 78.6 4.5 0.00015 30.5 5.8 50 42-94 18-68 (73)
11 3sjm_A Telomeric repeat-bindin 73.3 10 0.00035 27.5 6.3 51 36-89 5-55 (64)
12 2elk_A SPCC24B10.08C protein; 68.1 6.7 0.00023 27.7 4.2 47 42-93 9-56 (58)
13 1wgx_A KIAA1903 protein; MYB D 66.6 8.7 0.0003 29.3 4.8 47 44-93 10-57 (73)
14 2d9a_A B-MYB, MYB-related prot 65.9 23 0.0008 24.6 6.7 50 38-92 4-53 (60)
15 1guu_A C-MYB, MYB proto-oncoge 62.7 21 0.00071 24.1 5.8 46 42-92 3-48 (52)
16 2li6_A SWI/SNF chromatin-remod 59.2 2 7E-05 34.5 0.1 46 47-95 49-98 (116)
17 1ity_A TRF1; helix-turn-helix, 58.3 36 0.0012 24.4 6.7 52 38-92 6-57 (69)
18 2ba2_A D12_ORF131, hypothetica 58.0 36 0.0012 26.9 7.0 40 138-180 33-72 (85)
19 4eef_G F-HB80.4, designed hema 57.8 2.9 9.9E-05 32.4 0.7 45 43-90 21-66 (74)
20 2kes_A Synphilin-1; synphillin 57.6 9.7 0.00033 27.0 3.3 23 148-170 15-41 (48)
21 1c20_A DEAD ringer protein; DN 55.5 5.6 0.00019 32.3 2.2 48 47-95 52-106 (128)
22 2lm1_A Lysine-specific demethy 55.5 4.8 0.00016 31.5 1.7 47 47-94 44-96 (107)
23 2rq5_A Protein jumonji; develo 55.4 5.7 0.00019 32.6 2.2 47 48-95 43-96 (121)
24 3uun_A Dystrophin; triple heli 54.7 31 0.0011 25.5 6.1 56 155-210 40-95 (119)
25 2eqr_A N-COR1, N-COR, nuclear 53.9 43 0.0015 23.7 6.4 46 38-89 8-53 (61)
26 2cjj_A Radialis; plant develop 53.4 22 0.00077 27.8 5.2 49 43-96 9-60 (93)
27 1gvd_A MYB proto-oncogene prot 52.9 35 0.0012 23.0 5.6 46 42-92 3-48 (52)
28 2eqy_A RBP2 like, jumonji, at 52.1 7.2 0.00025 31.6 2.3 48 47-95 42-95 (122)
29 2jxj_A Histone demethylase jar 51.4 6.3 0.00022 30.2 1.7 47 47-94 36-88 (96)
30 2dim_A Cell division cycle 5-l 50.9 53 0.0018 23.5 6.6 49 39-92 6-54 (70)
31 1kkx_A Transcription regulator 50.7 4.6 0.00016 33.0 0.9 46 47-95 48-97 (123)
32 2cxy_A BAF250B subunit, HBAF25 49.9 6.2 0.00021 32.0 1.5 48 47-95 51-104 (125)
33 3uul_A Utrophin; spectrin repe 49.6 39 0.0013 25.1 5.9 56 156-211 41-96 (118)
34 3ok8_A Brain-specific angiogen 49.5 75 0.0026 28.8 8.7 68 138-208 72-148 (222)
35 2jrz_A Histone demethylase jar 48.7 7 0.00024 31.4 1.7 48 47-95 40-93 (117)
36 2yqk_A Arginine-glutamic acid 48.3 17 0.00059 26.1 3.6 47 38-89 5-51 (63)
37 2kk0_A AT-rich interactive dom 41.0 13 0.00045 30.9 2.3 46 48-94 65-117 (145)
38 1ig6_A MRF-2, modulator recogn 40.4 5.7 0.0002 31.2 -0.1 48 47-95 33-87 (107)
39 1w0t_A Telomeric repeat bindin 35.4 1E+02 0.0035 20.8 6.3 48 42-92 2-49 (53)
40 4fla_A Regulation of nuclear P 33.4 2.2E+02 0.0075 24.0 10.2 71 138-208 76-146 (152)
41 3ghg_A Fibrinogen alpha chain; 30.0 2.9E+02 0.01 28.3 10.2 72 136-208 108-191 (562)
42 2crg_A Metastasis associated p 29.2 51 0.0018 24.2 3.6 47 38-89 4-50 (70)
43 1m1j_B Fibrinogen beta chain; 28.4 3E+02 0.01 27.3 9.9 45 137-181 120-165 (464)
44 2elh_A CG11849-PA, LD40883P; s 26.8 1.8E+02 0.0063 21.1 7.8 49 39-95 17-65 (87)
45 1qgp_A Protein (double strande 25.4 94 0.0032 22.8 4.5 45 45-92 11-55 (77)
46 2da3_A Alpha-fetoprotein enhan 24.9 1.3E+02 0.0044 21.6 5.1 60 36-98 15-74 (80)
47 3tul_A Cell invasion protein S 24.6 1.3E+02 0.0045 26.1 5.7 60 141-215 30-98 (158)
48 1gv2_A C-MYB, MYB proto-oncoge 24.4 1.6E+02 0.0054 22.2 5.7 46 42-92 4-49 (105)
49 2aje_A Telomere repeat-binding 23.6 1.8E+02 0.0062 23.2 6.1 49 37-88 8-58 (105)
50 2k9n_A MYB24; R2R3 domain, DNA 22.6 1.7E+02 0.0056 22.4 5.6 47 41-93 52-98 (107)
51 2din_A Cell division cycle 5-l 21.7 2.1E+02 0.0072 20.0 6.3 49 39-94 6-54 (66)
52 1nkd_A ROP; atomic resolution 21.0 50 0.0017 24.9 2.1 24 148-171 38-62 (65)
53 3osg_A MYB21; transcription-DN 20.7 2.2E+02 0.0074 22.5 6.1 49 38-92 7-55 (126)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=5.5e-30 Score=193.80 Aligned_cols=62 Identities=45% Similarity=0.763 Sum_probs=58.9
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcccc
Q 021872 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA 98 (306)
Q Consensus 36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~~ 98 (306)
++++|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..++
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999 799999999999999999999999999999998764
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.07 E-value=0.53 Score=34.73 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=41.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCh---hHHHHhhCCCCCCHHHHHHhhhhhhhcc
Q 021872 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATP---KTIMRTMGVKGLTLYHLKSHLQKYRLGK 96 (306)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~Il~lM~v~gLT~~hVkSHLQKyRl~~ 96 (306)
...+=.||+|=++.|+++|..+| .+...| +.|-+.| +|=|..+|+.|.++|-...
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 34455899999999999999999 333223 4555554 6899999999999996543
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=87.57 E-value=1.4 Score=33.58 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=40.5
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhh
Q 021872 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 (306)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl 94 (306)
...+-.||+|=+.+|++||...|+ .=+.|-+.| ++=|..+++.|.++|-+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRLPI 64 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTSCC
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHhcc
Confidence 344678999999999999999994 346777776 47899999999988733
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.93 E-value=1.9 Score=31.68 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=41.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcc
Q 021872 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 96 (306)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~ 96 (306)
...+-.||+|=++.|+++|..+|- .=+.|-+. ++|=|-.+||.|.++|-...
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 345668999999999999999993 44666665 47899999999999885443
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=86.12 E-value=2.7 Score=29.81 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=40.0
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhh
Q 021872 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 (306)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl 94 (306)
.-.|-.||+|=.+++++||..+| . ..=+.|-+.| +|=|-.+++.|.++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 44566899999999999999999 1 1236666666 68899999999887744
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=85.38 E-value=1.4 Score=44.12 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=44.9
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcccc
Q 021872 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA 98 (306)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~~ 98 (306)
.+..-+||+|=|..|++|+.+.|- .=+.|-+.++- =|..+|++|.++||.....
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence 456789999999999999999992 47788888664 4899999999999886543
No 7
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=85.05 E-value=1.2 Score=35.03 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=37.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHh---h-C-----------C--CCCCHHHHHHhhhhhhhccc
Q 021872 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRT---M-G-----------V--KGLTLYHLKSHLQKYRLGKQ 97 (306)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~l---M-~-----------v--~gLT~~hVkSHLQKyRl~~~ 97 (306)
+++..=+|.++|-..|++|+...--....+ -+|.. | | . +-=|+.+|.||||.-+..+.
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 345566899999999999998875111222 22211 1 1 0 23378899999998766544
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=82.34 E-value=2.2 Score=39.33 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=45.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhccc
Q 021872 37 TDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ 97 (306)
Q Consensus 37 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~ 97 (306)
...+..-+||+|=++.|++|+...|- .=..|-++ |++=|..+||+|..+||....
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 45577889999999999999999992 36777776 578899999999999986543
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=81.34 E-value=2.1 Score=32.24 Aligned_cols=48 Identities=17% Similarity=0.377 Sum_probs=37.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChh---HHHHhhCCCCCCHHHHHHhhhhhhhc
Q 021872 42 RLRWTAELHDRFVDAVTQLGGPDKATPK---TIMRTMGVKGLTLYHLKSHLQKYRLG 95 (306)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK---~Il~lM~v~gLT~~hVkSHLQKyRl~ 95 (306)
+-.||.|=+..|+.|+..+++ -||. .|-+.| |=|..+|+.|.+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 336999999999999999983 3664 465665 67999999998877443
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.63 E-value=4.5 Score=30.53 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=39.4
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhC-CCCCCHHHHHHhhhhhhh
Q 021872 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMG-VKGLTLYHLKSHLQKYRL 94 (306)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~-v~gLT~~hVkSHLQKyRl 94 (306)
+-.||+|=...|++||..+|. -+|..--++=. |||=|-.+|+.|.+.+..
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 346999999999999999992 37866544333 689999999999887643
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=73.34 E-value=10 Score=27.51 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=37.1
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhh
Q 021872 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 89 (306)
Q Consensus 36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHL 89 (306)
++..+.|-.||+|=-+..+++|.+.|. . .=+.|.+.+++.|=|-.+++-+-
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHH
Confidence 445566778999999999999999992 1 35678888877788888887543
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=68.08 E-value=6.7 Score=27.69 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=36.1
Q ss_pred CcccCHHHHHHHHHHHHHhC-CCCCCChhHHHHhhCCCCCCHHHHHHhhhhhh
Q 021872 42 RLRWTAELHDRFVDAVTQLG-GPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93 (306)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyR 93 (306)
+-.||+|=.+++++||.+.| + .=+.|-+.|+. |=|..+++.|.++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~----~W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG----NWADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT----CHHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC----CHHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999999 3 33556555532 678899998888764
No 13
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=66.60 E-value=8.7 Score=29.27 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChhHHHHhh-CCCCCCHHHHHHhhhhhh
Q 021872 44 RWTAELHDRFVDAVTQLGGPDKATPKTIMRTM-GVKGLTLYHLKSHLQKYR 93 (306)
Q Consensus 44 rWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM-~v~gLT~~hVkSHLQKyR 93 (306)
.||.+=+.+|.+|+..++ +.+|-+--++= -|+|=|.++|+.|.+...
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999987 44887654433 378999999999887653
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=65.89 E-value=23 Score=24.60 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
....|-.||+|=.++++++|.++|- ..=..|-+.| +|=|-.+++.|..+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456778999999999999999991 1235565554 678888888887765
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=62.65 E-value=21 Score=24.11 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=36.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
|-.||+|=.+.++++|.+.|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 2346666654 688888988887665
No 16
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=59.16 E-value=2 Score=34.47 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCCCHHHHHHhhhhhhhc
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLTLYHLKSHLQKYRLG 95 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gLT~~hVkSHLQKyRl~ 95 (306)
-+|+..|.. |..+||.++.+- +.|.+.||++. -..+++|..||=+.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 98 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHSH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHHH
Confidence 488888886 688999987664 67899999988 57899999988554
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=58.27 E-value=36 Score=24.41 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=40.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
.++.|-.||+|=-+..+++|..+|. -.=+.|.+.|+..|=|-.+++-+-..|
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 4677889999999999999999991 134677777765578888888776555
No 18
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=57.98 E-value=36 Score=26.92 Aligned_cols=40 Identities=43% Similarity=0.453 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 021872 138 QVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 180 (306)
Q Consensus 138 qi~EALr~QmEVQrrLhEQLEVQR~LQlRIEaQGKYLqsiLek 180 (306)
.|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+-
T Consensus 33 kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~t 72 (85)
T 2ba2_A 33 VVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEA 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 35666666654444444555 78888899999999999843
No 19
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=57.77 E-value=2.9 Score=32.35 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=35.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhC-CCCCCHHHHHHhhh
Q 021872 43 LRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMG-VKGLTLYHLKSHLQ 90 (306)
Q Consensus 43 lrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~-v~gLT~~hVkSHLQ 90 (306)
-.||.+=.+.|..|+.... +-||.+--++-. |||=|..+|+.|.|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3599999999999998875 557865544333 68999999999986
No 20
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=57.61 E-value=9.7 Score=27.03 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=17.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHh
Q 021872 148 EVQRRLHEQ----LEVQRRLQLRIEAQ 170 (306)
Q Consensus 148 EVQrrLhEQ----LEVQR~LQlRIEaQ 170 (306)
.+-|+|+|| +.+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566788887 56788888878776
No 21
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=55.51 E-value=5.6 Score=32.33 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCC-C--HHHHHHhhhhhhhc
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGL-T--LYHLKSHLQKYRLG 95 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gL-T--~~hVkSHLQKyRl~ 95 (306)
-+||..|.. |..+||.++.+- +.|.+.||++.- | -..+|.|..||=+.
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 389999986 679999887654 678889998752 2 57899999888553
No 22
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.47 E-value=4.8 Score=31.51 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCCC--HHHHHHhhhhhhh
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRL 94 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKyRl 94 (306)
-+|++.|.. |..+||.++.+- +.|.+.||+|.-| -..+|.|..||=+
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 389999986 678999987664 5788899997633 3578888888744
No 23
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=55.44 E-value=5.7 Score=32.60 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCCC---HHHHHHhhhhhhhc
Q 021872 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT---LYHLKSHLQKYRLG 95 (306)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gLT---~~hVkSHLQKyRl~ 95 (306)
+|+..|. +|..+||.++.|- +.|-..|++|... ...++.|..||=+.
T Consensus 43 DL~~Ly~-~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 43 DLACFFR-LINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp CHHHHHH-HHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cHHHHHH-HHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 7888886 6779999988776 6788899987643 57899999888654
No 24
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=54.73 E-value=31 Score=25.51 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHhhhh
Q 021872 155 EQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVS 210 (306)
Q Consensus 155 EQLEVQR~LQlRIEaQGKYLqsiLekaq~~L~~~~~~~~gle~a~~eLs~l~~~~~ 210 (306)
.|++-.+.|+--|+++..-+.+|.+.+++-+......+.....-+..|.+|...-.
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~ 95 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWE 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444556666788888889999988888665433222222334455555554433
No 25
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.88 E-value=43 Score=23.71 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=36.1
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhh
Q 021872 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 89 (306)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHL 89 (306)
.++..-.||+|=|+.|++|+.+.| . .=..|-.. +|+=|..+|..|.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLYY 53 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHHH
Confidence 567778999999999999999998 2 34566544 5788888887664
No 26
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=53.39 E-value=22 Score=27.85 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=38.2
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChh---HHHHhhCCCCCCHHHHHHhhhhhhhcc
Q 021872 43 LRWTAELHDRFVDAVTQLGGPDKATPK---TIMRTMGVKGLTLYHLKSHLQKYRLGK 96 (306)
Q Consensus 43 lrWT~ELH~rFV~AV~qLGG~~kAtPK---~Il~lM~v~gLT~~hVkSHLQKyRl~~ 96 (306)
-.||+|=...|++|+..+| . -+|. .|-+. |||=|..+|+.|.+++...+
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-K--DTPDRWANVARA--VEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHH--STTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 3699999999999999998 2 2564 34443 57999999999998875443
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=52.85 E-value=35 Score=23.02 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=34.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
+-.||+|=.+.++++|.+.|. -.=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1234555554 688888888887765
No 28
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.10 E-value=7.2 Score=31.60 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCCC--HHHHHHhhhhhhhc
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRLG 95 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKyRl~ 95 (306)
-+|++.|.. |..+||.++.+- +.|.+.|+++.-+ ..+++.|..||=+.
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 388998886 779999887664 5788999997543 35888888888553
No 29
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=51.42 E-value=6.3 Score=30.22 Aligned_cols=47 Identities=21% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCCC--HHHHHHhhhhhhh
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRL 94 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKyRl 94 (306)
-||+..|.. |..+||.++.+- +.|.+.|+++.-+ -.++|.|..||=+
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 378888886 678999987664 6788899986532 4578888887743
No 30
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.93 E-value=53 Score=23.48 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
...|=.||+|=.++++++|.+.|- ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 455678999999999999999991 13466766664 78888888877665
No 31
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=50.66 E-value=4.6 Score=33.04 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCCCHHHHHHhhhhhhhc
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLTLYHLKSHLQKYRLG 95 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gLT~~hVkSHLQKyRl~ 95 (306)
-||++.|.. |..+||.++.+. +.|.+.|+++. -..++.|..||=+.
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 97 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHH
Confidence 378888875 789999988775 67889999988 78899999888664
No 32
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.90 E-value=6.2 Score=32.01 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCCC--HHHHHHhhhhhhhc
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRLG 95 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKyRl~ 95 (306)
-+|++.|.. |..+||.++.+- +.|.+.|+++.-| -..+|.|..||=+.
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 388998886 679999987654 5788999998643 35788888887553
No 33
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=49.56 E-value=39 Score=25.13 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHhhhhc
Q 021872 156 QLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSN 211 (306)
Q Consensus 156 QLEVQR~LQlRIEaQGKYLqsiLekaq~~L~~~~~~~~gle~a~~eLs~l~~~~~~ 211 (306)
|++-.+.|+--|+++..-+..|.+.+.+-+.....++.....-+..|.+|...-..
T Consensus 41 ~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~ 96 (118)
T 3uul_A 41 QFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEA 96 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH
Confidence 34444556667888888899999988876643322222333345566666555443
No 34
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=49.47 E-value=75 Score=28.75 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHhh
Q 021872 138 QVTEALRVQMEVQRRLHEQLEV---------QRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIK 208 (306)
Q Consensus 138 qi~EALr~QmEVQrrLhEQLEV---------QR~LQlRIEaQGKYLqsiLekaq~~L~~~~~~~~gle~a~~eLs~l~~~ 208 (306)
.|.+||.-=-|++|+|..+||. =.+|+.+||...||++....+=+ ..+.....++|.+.+||-.+..+
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~---~e~k~~~~~leK~~~elkK~~rk 148 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYE---IEYRHRAANLEKCMSELWRMERK 148 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHhhhh
Confidence 4667775444899999888774 24789999999999987764332 23455566788888888766533
No 35
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=48.72 E-value=7 Score=31.41 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCCC--HHHHHHhhhhhhhc
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRLG 95 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gLT--~~hVkSHLQKyRl~ 95 (306)
-+|++.|.. |..+||.++.+- +.|.+.||++.-| ..+++.|..||=+.
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 389999986 678999887664 5788999987433 46899998888553
No 36
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.28 E-value=17 Score=26.15 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhh
Q 021872 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 89 (306)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHL 89 (306)
+...+-.||+|=|+.|.+|+...| + .=..|-+.| |+.=|..+|..+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG---K-df~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG---K-NFFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC---S-CHHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC---c-cHHHHHHHH-cCCCcHHHHHHHH
Confidence 444567899999999999999999 2 234554411 5777888887655
No 37
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=41.05 E-value=13 Score=30.95 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCCC-C--HHHHHHhhhhhhh
Q 021872 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGL-T--LYHLKSHLQKYRL 94 (306)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~gL-T--~~hVkSHLQKyRl 94 (306)
+|+..|.. |..+||.++.+- +.|.+.|+++.- | .+.++.|..||=+
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~ 117 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLY 117 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSS
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHH
Confidence 78988886 679999987664 678899998762 2 4689999888854
No 38
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=40.39 E-value=5.7 Score=31.19 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----hHHHHhhCCCC-CC--HHHHHHhhhhhhhc
Q 021872 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKG-LT--LYHLKSHLQKYRLG 95 (306)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~Il~lM~v~g-LT--~~hVkSHLQKyRl~ 95 (306)
-+|+..|.. |..+||.++.+- +.|.+.||++. .| -.++++|..||=+.
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 489998886 679999987665 57888999865 22 35799998888553
No 39
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=35.41 E-value=1e+02 Score=20.81 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=35.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999991 134677777765577888887665443
No 40
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=33.40 E-value=2.2e+02 Score=24.03 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHhh
Q 021872 138 QVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIK 208 (306)
Q Consensus 138 qi~EALr~QmEVQrrLhEQLEVQR~LQlRIEaQGKYLqsiLekaq~~L~~~~~~~~gle~a~~eLs~l~~~ 208 (306)
.|.||..+=-|-.+||-.+++=.+.|.--+++=..|.+..+.++.+.+..+..-..-+.+.|.+|.+....
T Consensus 76 ~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 76 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46677777788999999999999999888888889999999999998887777666777777777665443
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.03 E-value=2.9e+02 Score=28.28 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=48.1
Q ss_pred CcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHH-----------HhhhcHHHHHHHHH
Q 021872 136 GYQVTEALRVQM-EVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQA-----------IVAAGLEAAREELS 203 (306)
Q Consensus 136 ~~qi~EALr~Qm-EVQrrLhEQLEVQR~LQlRIEaQGKYLqsiLekaq~~L~~~~-----------~~~~gle~a~~eLs 203 (306)
-.++++-||-++ .++++|..||.--|.||=.|+.|-.-+|. ||.+--+--+.+ .-.-.+|.-..||.
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR-LEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR-LEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLE 186 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccccchheeecchHHHHHHHHHHH
Confidence 357887777665 78888888887778999999999888875 444332211111 11235666778888
Q ss_pred HHHhh
Q 021872 204 ELAIK 208 (306)
Q Consensus 204 ~l~~~ 208 (306)
++.++
T Consensus 187 Qv~a~ 191 (562)
T 3ghg_A 187 QVIAK 191 (562)
T ss_dssp HHHTT
T ss_pred HHhhc
Confidence 87654
No 42
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.21 E-value=51 Score=24.19 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=35.6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhh
Q 021872 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 89 (306)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHL 89 (306)
.++..-.||+|=+..|.+|+...| -+ -..|-+.| |++-|..+|..+.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 456677999999999999999999 22 45554411 6788888888776
No 43
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.44 E-value=3e+02 Score=27.34 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=33.9
Q ss_pred cchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 021872 137 YQVTEALRVQM-EVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKA 181 (306)
Q Consensus 137 ~qi~EALr~Qm-EVQrrLhEQLEVQR~LQlRIEaQGKYLqsiLeka 181 (306)
+++.++|+..+ +-|+++.+..++=......||.|-+|++.+++..
T Consensus 120 ~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~ 165 (464)
T 1m1j_B 120 YQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNN 165 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666554 6778888888877788889999999999888643
No 44
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=26.79 E-value=1.8e+02 Score=21.08 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhc
Q 021872 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG 95 (306)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~ 95 (306)
++++-++|+|+-...|+.+. +| .+...|-+.+||. ...|...+.+|+..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~--~g---~s~~~iA~~~gIs---~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH--DG---ESKASVARDIGVP---ESTLRGWCKNEDKL 65 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH--HT---CCHHHHHHHHTCC---HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH--CC---CCHHHHHHHHCcC---HHHHHHHHHHHHhc
Confidence 34567899999888887773 33 4778888888884 44455556666653
No 45
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.43 E-value=94 Score=22.79 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 45 WTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 45 WT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
=|++..++.++++...|--+..|.+.|-+.+|| +...|..||-+-
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 367888899999999994467899999999985 466788887443
No 46
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=24.91 E-value=1.3e+02 Score=21.56 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=39.3
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcccc
Q 021872 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA 98 (306)
Q Consensus 36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~~ 98 (306)
...+++|-++|++--.. ++.+.... ...++..+.++...-|||..+|+-=.|.-|...++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~-Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEI-LYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCCTTCCSSCCTTTHHH-HHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 45677788888864333 33333333 34566666666666789999999999888775443
No 47
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=24.59 E-value=1.3e+02 Score=26.07 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHh-------hHHHHhhhcHHHHHHHHHHHHhhhhc
Q 021872 141 EALRVQMEVQRRLHEQL--EVQRRLQLRIEAQGKYLQSILEKACKAL-------NDQAIVAAGLEAAREELSELAIKVSN 211 (306)
Q Consensus 141 EALr~QmEVQrrLhEQL--EVQR~LQlRIEaQGKYLqsiLekaq~~L-------~~~~~~~~gle~a~~eLs~l~~~~~~ 211 (306)
.+.+.+||-|..-|||| |.| +.|+.|+++- ....++-.-+..+...|.++..+++.
T Consensus 30 a~~~am~~sqqq~~eqlS~eFq---------------tal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~ 94 (158)
T 3tul_A 30 AVWQAMIESQKEMGIQVSKEFQ---------------TALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQS 94 (158)
T ss_dssp HHHHHHHHHHHHHTC--CCTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc
Confidence 56777889998888885 333 5555555542 23334444455555556666666666
Q ss_pred cCCC
Q 021872 212 DCQG 215 (306)
Q Consensus 212 ~~~~ 215 (306)
.-|+
T Consensus 95 L~P~ 98 (158)
T 3tul_A 95 LDPA 98 (158)
T ss_dssp C---
T ss_pred CCCC
Confidence 5554
No 48
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=24.36 E-value=1.6e+02 Score=22.23 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=35.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
+-.||+|=.++++++|...|. . .=+.|-+.| +|=|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~-~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-C--cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 447999999999999999993 1 234565555 688888988777665
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=23.65 E-value=1.8e+02 Score=23.18 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=38.2
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhC--CCCCCHHHHHHh
Q 021872 37 TDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMG--VKGLTLYHLKSH 88 (306)
Q Consensus 37 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~--v~gLT~~hVkSH 88 (306)
..++.|-.||+|=-+..+++|..+|. -.=+.|++.+. .+|=|--++|.+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdr 58 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDK 58 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHH
Confidence 35788999999999999999999992 12357777553 478888899854
No 50
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=22.64 E-value=1.7e+02 Score=22.44 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=37.2
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhh
Q 021872 41 PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93 (306)
Q Consensus 41 ~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyR 93 (306)
.+-.||+|=...++++|.++|. .=..|-+.| ||=|-.+|+.|...+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 4568999999999999999993 235666655 7899999998876543
No 51
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.73 E-value=2.1e+02 Score=19.98 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=37.9
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhh
Q 021872 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 (306)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl 94 (306)
...+-.||+|=.++++++|..+|- .=..|-+++ |=|-.+++.|.+.|-.
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence 344567999999999999999983 345666644 5889999999887744
No 52
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=21.03 E-value=50 Score=24.88 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=16.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhh
Q 021872 148 EVQRRLHEQLE-VQRRLQLRIEAQG 171 (306)
Q Consensus 148 EVQrrLhEQLE-VQR~LQlRIEaQG 171 (306)
..=-+|||+-| ++|+|+.|+++.+
T Consensus 38 ~~CE~LHe~AE~L~~~l~~r~~~~~ 62 (65)
T 1nkd_A 38 DICESLHDHADELYRSCLARFGDDG 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34458999865 8999999998754
No 53
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=20.73 E-value=2.2e+02 Score=22.46 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=37.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (306)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy 92 (306)
.+..|-+||+|=-++++++|.+.|. .=+.|-+.| +|=|..+++.+-.+|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNY 55 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhh
Confidence 4566778999999999999999993 456666554 567777777666554
Done!