Query 021874
Match_columns 306
No_of_seqs 189 out of 766
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 3.4E-12 7.3E-17 95.7 9.6 61 232-292 3-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.4 5.2E-12 1.1E-16 94.6 9.3 61 232-292 3-63 (64)
3 KOG4343 bZIP transcription fac 99.3 6.8E-12 1.5E-16 126.8 7.8 70 227-296 274-343 (655)
4 KOG4005 Transcription factor X 99.3 3.6E-11 7.7E-16 111.9 10.7 76 231-306 66-141 (292)
5 KOG0709 CREB/ATF family transc 99.1 4.7E-11 1E-15 119.2 6.1 70 230-306 247-316 (472)
6 KOG3584 cAMP response element 99.1 8.3E-11 1.8E-15 112.0 7.2 60 228-287 285-344 (348)
7 PF07716 bZIP_2: Basic region 99.1 1.2E-09 2.5E-14 79.7 8.7 51 232-283 3-53 (54)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.2 2.6E-08 5.7E-13 79.9 -6.5 62 231-292 27-88 (92)
9 KOG0837 Transcriptional activa 98.1 1.5E-05 3.3E-10 75.5 8.3 56 232-287 203-259 (279)
10 KOG4571 Activating transcripti 97.6 0.0011 2.5E-08 63.8 12.4 65 233-304 225-290 (294)
11 KOG4196 bZIP transcription fac 97.3 0.0026 5.7E-08 55.0 9.9 52 232-283 51-102 (135)
12 KOG3119 Basic region leucine z 97.0 0.0037 7.9E-08 59.4 8.6 52 238-289 198-249 (269)
13 KOG3863 bZIP transcription fac 96.7 0.0026 5.6E-08 66.5 5.9 65 234-305 490-554 (604)
14 PF02183 HALZ: Homeobox associ 96.0 0.024 5.1E-07 40.6 5.9 41 266-306 2-42 (45)
15 TIGR02449 conserved hypothetic 95.9 0.051 1.1E-06 41.9 7.5 50 257-306 2-51 (65)
16 PF06005 DUF904: Protein of un 95.8 0.081 1.8E-06 41.3 8.6 49 255-303 4-52 (72)
17 PF06156 DUF972: Protein of un 95.3 0.1 2.2E-06 43.6 8.0 50 255-304 8-57 (107)
18 PRK13169 DNA replication intia 95.3 0.1 2.2E-06 43.9 7.9 49 255-303 8-56 (110)
19 PRK13729 conjugal transfer pil 95.2 0.056 1.2E-06 55.4 7.5 51 255-305 76-126 (475)
20 PF06156 DUF972: Protein of un 94.7 0.16 3.4E-06 42.5 7.4 48 259-306 5-52 (107)
21 PRK10884 SH3 domain-containing 94.3 0.33 7.3E-06 44.7 9.5 45 254-298 124-168 (206)
22 COG3074 Uncharacterized protei 94.3 0.23 5E-06 39.2 7.0 50 256-305 19-68 (79)
23 PF06005 DUF904: Protein of un 94.2 0.36 7.8E-06 37.7 8.0 49 257-305 13-61 (72)
24 PF08614 ATG16: Autophagy prot 94.2 1.2 2.5E-05 40.1 12.4 73 231-303 113-185 (194)
25 PRK13169 DNA replication intia 94.1 0.24 5.2E-06 41.7 7.3 49 258-306 4-52 (110)
26 PRK10884 SH3 domain-containing 93.9 0.88 1.9E-05 42.0 11.3 53 253-305 116-168 (206)
27 COG4467 Regulator of replicati 93.8 0.32 6.9E-06 41.2 7.4 45 262-306 8-52 (114)
28 TIGR02894 DNA_bind_RsfA transc 93.7 0.34 7.4E-06 43.4 8.0 41 263-303 98-138 (161)
29 PF14197 Cep57_CLD_2: Centroso 93.5 0.55 1.2E-05 36.4 7.9 50 255-304 12-68 (69)
30 TIGR02449 conserved hypothetic 93.0 0.9 1.9E-05 35.1 8.3 51 255-305 7-57 (65)
31 PRK15422 septal ring assembly 92.7 0.6 1.3E-05 37.4 7.1 49 258-306 21-69 (79)
32 PF07989 Microtub_assoc: Micro 92.6 0.6 1.3E-05 36.7 7.0 49 257-305 2-58 (75)
33 PF10224 DUF2205: Predicted co 92.5 0.95 2.1E-05 36.2 8.1 47 258-304 19-65 (80)
34 PF04102 SlyX: SlyX; InterPro 91.4 1.2 2.6E-05 34.1 7.2 49 255-303 4-52 (69)
35 PF11559 ADIP: Afadin- and alp 91.1 4.3 9.4E-05 34.8 11.3 68 233-300 44-111 (151)
36 PRK11637 AmiB activator; Provi 90.9 2.9 6.4E-05 41.7 11.5 54 251-304 71-124 (428)
37 TIGR00219 mreC rod shape-deter 90.6 0.59 1.3E-05 44.7 6.0 38 263-300 67-108 (283)
38 COG4467 Regulator of replicati 90.5 1.2 2.6E-05 37.8 6.9 47 255-301 8-54 (114)
39 PF13747 DUF4164: Domain of un 90.3 5.7 0.00012 32.1 10.6 71 232-302 9-79 (89)
40 PF11559 ADIP: Afadin- and alp 90.0 2.6 5.5E-05 36.2 8.9 14 260-273 78-91 (151)
41 PF14197 Cep57_CLD_2: Centroso 90.0 2.3 5.1E-05 32.9 7.8 18 287-304 44-61 (69)
42 PF09304 Cortex-I_coil: Cortex 89.9 2.4 5.2E-05 35.8 8.4 59 233-291 15-73 (107)
43 PF07888 CALCOCO1: Calcium bin 89.2 4.4 9.6E-05 42.6 11.4 70 236-305 152-221 (546)
44 smart00340 HALZ homeobox assoc 89.1 0.8 1.7E-05 32.8 4.2 26 279-304 8-33 (44)
45 PRK02119 hypothetical protein; 88.8 3 6.6E-05 32.5 7.7 50 254-303 8-57 (73)
46 PRK15422 septal ring assembly 88.5 2.9 6.4E-05 33.5 7.5 40 255-294 4-43 (79)
47 TIGR03752 conj_TIGR03752 integ 88.4 1.9 4.1E-05 44.5 8.1 30 257-286 75-104 (472)
48 KOG1414 Transcriptional activa 88.4 0.022 4.7E-07 56.8 -5.6 56 229-284 149-208 (395)
49 PRK11637 AmiB activator; Provi 88.3 6.2 0.00013 39.4 11.5 59 247-305 60-118 (428)
50 PF04102 SlyX: SlyX; InterPro 88.0 4.2 9.1E-05 31.1 7.9 47 260-306 2-48 (69)
51 PF06785 UPF0242: Uncharacteri 87.8 2 4.4E-05 42.9 7.5 55 249-303 121-175 (401)
52 COG4026 Uncharacterized protei 87.6 3.3 7.1E-05 39.5 8.5 48 255-302 142-189 (290)
53 PRK04406 hypothetical protein; 87.4 4.1 8.9E-05 32.0 7.7 49 255-303 11-59 (75)
54 PRK02793 phi X174 lysis protei 87.3 4.4 9.5E-05 31.5 7.7 50 255-304 8-57 (72)
55 PF07106 TBPIP: Tat binding pr 87.1 2.2 4.8E-05 37.3 6.7 50 255-304 86-137 (169)
56 PRK02119 hypothetical protein; 87.1 4.1 8.9E-05 31.8 7.5 50 257-306 4-53 (73)
57 PRK00295 hypothetical protein; 87.1 5.3 0.00012 30.7 8.0 49 255-303 5-53 (68)
58 KOG4005 Transcription factor X 87.0 8.4 0.00018 37.0 10.9 74 231-304 70-146 (292)
59 PF15294 Leu_zip: Leucine zipp 86.8 2.3 5.1E-05 41.2 7.2 45 260-304 130-174 (278)
60 KOG0977 Nuclear envelope prote 86.7 3.4 7.3E-05 43.5 8.8 36 247-282 34-76 (546)
61 PF02183 HALZ: Homeobox associ 86.5 1.5 3.3E-05 31.3 4.4 22 281-302 10-31 (45)
62 PF12718 Tropomyosin_1: Tropom 86.4 4.3 9.3E-05 35.3 8.1 42 258-299 17-58 (143)
63 PF12325 TMF_TATA_bd: TATA ele 86.3 12 0.00026 31.9 10.6 43 262-304 68-110 (120)
64 PF07106 TBPIP: Tat binding pr 86.3 3.2 7E-05 36.3 7.3 29 255-283 109-137 (169)
65 PF12808 Mto2_bdg: Micro-tubul 86.1 2.6 5.6E-05 31.3 5.5 50 252-304 1-50 (52)
66 PRK04325 hypothetical protein; 85.9 4.3 9.3E-05 31.7 7.1 49 255-303 9-57 (74)
67 PRK13922 rod shape-determining 85.8 3.7 8.1E-05 38.4 8.0 44 253-300 67-110 (276)
68 PRK04406 hypothetical protein; 85.6 5.8 0.00013 31.2 7.7 50 257-306 6-55 (75)
69 PF10186 Atg14: UV radiation r 85.6 14 0.0003 34.0 11.5 36 258-293 66-101 (302)
70 PF08647 BRE1: BRE1 E3 ubiquit 85.5 16 0.00036 29.5 10.6 65 237-301 6-70 (96)
71 PRK04325 hypothetical protein; 85.5 6.1 0.00013 30.8 7.7 51 256-306 3-53 (74)
72 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.4 13 0.00029 31.5 10.4 36 267-302 96-131 (132)
73 PRK10803 tol-pal system protei 85.3 4.3 9.4E-05 38.4 8.2 49 256-304 55-103 (263)
74 KOG1962 B-cell receptor-associ 85.1 3.3 7.1E-05 38.9 7.1 46 255-300 165-210 (216)
75 KOG1414 Transcriptional activa 85.1 0.4 8.6E-06 47.9 1.2 54 233-286 284-338 (395)
76 PRK00736 hypothetical protein; 85.0 7.1 0.00015 30.0 7.8 49 255-303 5-53 (68)
77 TIGR02894 DNA_bind_RsfA transc 85.0 4.6 0.0001 36.3 7.7 39 251-289 107-145 (161)
78 smart00338 BRLZ basic region l 84.9 4.3 9.2E-05 30.2 6.4 38 262-299 26-63 (65)
79 PF11932 DUF3450: Protein of u 84.9 8.4 0.00018 35.8 9.8 43 253-295 54-96 (251)
80 PF08826 DMPK_coil: DMPK coile 84.7 8.4 0.00018 29.4 7.9 47 259-305 15-61 (61)
81 PF12325 TMF_TATA_bd: TATA ele 84.6 6.1 0.00013 33.7 8.0 14 291-304 69-82 (120)
82 PHA03162 hypothetical protein; 84.3 2.3 4.9E-05 37.2 5.3 27 252-278 10-36 (135)
83 COG4942 Membrane-bound metallo 84.2 13 0.00029 38.0 11.4 70 234-303 38-107 (420)
84 PF15070 GOLGA2L5: Putative go 84.1 11 0.00023 40.3 11.2 45 251-295 118-186 (617)
85 PF05278 PEARLI-4: Arabidopsis 83.8 17 0.00036 35.2 11.4 53 254-306 206-258 (269)
86 PF13851 GAS: Growth-arrest sp 83.3 22 0.00048 32.5 11.6 59 231-289 69-127 (201)
87 PRK02793 phi X174 lysis protei 83.2 7.4 0.00016 30.2 7.3 48 259-306 5-52 (72)
88 PHA03155 hypothetical protein; 83.2 5.5 0.00012 34.1 7.0 25 256-280 9-33 (115)
89 PRK00888 ftsB cell division pr 83.2 3.2 6.8E-05 34.4 5.5 33 251-283 30-62 (105)
90 PF00170 bZIP_1: bZIP transcri 83.1 6.9 0.00015 29.0 6.9 35 263-297 27-61 (64)
91 PRK09039 hypothetical protein; 83.1 4.8 0.00011 39.6 7.7 48 258-305 133-180 (343)
92 PF09755 DUF2046: Uncharacteri 83.0 4.2 9.2E-05 40.0 7.2 48 258-305 23-70 (310)
93 PRK00295 hypothetical protein; 82.9 7.3 0.00016 29.9 7.1 46 260-305 3-48 (68)
94 PRK00846 hypothetical protein; 82.5 7.9 0.00017 30.8 7.3 49 255-303 13-61 (77)
95 PF05266 DUF724: Protein of un 82.4 16 0.00035 33.4 10.3 53 232-284 87-146 (190)
96 PRK00888 ftsB cell division pr 82.4 6.1 0.00013 32.7 6.9 34 257-290 29-62 (105)
97 PF07407 Seadorna_VP6: Seadorn 81.9 2.6 5.6E-05 42.1 5.3 32 263-296 33-64 (420)
98 PF14662 CCDC155: Coiled-coil 81.8 9.7 0.00021 35.2 8.6 42 258-299 98-139 (193)
99 PF09726 Macoilin: Transmembra 81.8 12 0.00025 40.5 10.6 38 260-297 543-580 (697)
100 PF10473 CENP-F_leu_zip: Leuci 81.7 30 0.00065 30.4 11.3 45 238-282 35-79 (140)
101 PF15035 Rootletin: Ciliary ro 81.6 6.8 0.00015 35.5 7.5 51 255-305 67-117 (182)
102 PF11932 DUF3450: Protein of u 80.8 23 0.00051 32.8 11.0 45 258-302 52-96 (251)
103 PF06810 Phage_GP20: Phage min 80.7 7.2 0.00016 34.4 7.2 33 254-286 33-68 (155)
104 KOG4797 Transcriptional regula 80.7 6.1 0.00013 33.7 6.4 19 278-296 76-94 (123)
105 PF14915 CCDC144C: CCDC144C pr 80.7 14 0.00029 36.4 9.6 63 243-305 181-243 (305)
106 PF08614 ATG16: Autophagy prot 80.7 7.7 0.00017 34.8 7.6 48 255-302 130-177 (194)
107 PF05103 DivIVA: DivIVA protei 80.6 0.95 2.1E-05 37.3 1.6 46 255-300 25-70 (131)
108 PF04899 MbeD_MobD: MbeD/MobD 80.6 14 0.00031 28.8 8.0 33 272-304 24-56 (70)
109 PF01166 TSC22: TSC-22/dip/bun 80.5 1.9 4.1E-05 32.8 3.0 28 271-298 16-43 (59)
110 PF04156 IncA: IncA protein; 80.5 34 0.00074 30.0 11.5 59 244-302 119-177 (191)
111 COG4026 Uncharacterized protei 80.4 8.7 0.00019 36.7 8.0 42 257-298 137-178 (290)
112 PF09304 Cortex-I_coil: Cortex 80.3 35 0.00076 28.9 11.3 56 250-305 11-66 (107)
113 COG3883 Uncharacterized protei 80.3 8.8 0.00019 37.1 8.1 33 253-285 57-89 (265)
114 PF04977 DivIC: Septum formati 80.3 5.5 0.00012 29.8 5.6 30 252-281 21-50 (80)
115 PRK00846 hypothetical protein; 79.9 14 0.0003 29.5 7.8 49 258-306 9-57 (77)
116 PF12709 Kinetocho_Slk19: Cent 79.6 9.7 0.00021 31.1 7.0 43 253-295 40-82 (87)
117 COG1579 Zn-ribbon protein, pos 79.5 30 0.00065 33.0 11.3 50 234-283 31-80 (239)
118 PF10805 DUF2730: Protein of u 79.1 10 0.00023 31.2 7.3 46 255-300 49-96 (106)
119 PF09789 DUF2353: Uncharacteri 79.1 19 0.00041 35.7 10.2 47 258-304 68-114 (319)
120 PHA02562 46 endonuclease subun 79.0 20 0.00043 36.3 10.7 8 113-120 114-121 (562)
121 PF12718 Tropomyosin_1: Tropom 79.0 11 0.00025 32.7 7.8 30 255-284 35-64 (143)
122 TIGR02209 ftsL_broad cell divi 78.7 9.2 0.0002 29.4 6.5 31 252-282 28-58 (85)
123 PF05529 Bap31: B-cell recepto 78.7 19 0.00042 32.0 9.4 38 267-304 152-189 (192)
124 PRK00736 hypothetical protein; 78.6 12 0.00027 28.7 7.0 46 260-305 3-48 (68)
125 PRK09039 hypothetical protein; 78.4 17 0.00036 35.9 9.7 39 263-301 124-162 (343)
126 COG4942 Membrane-bound metallo 78.3 17 0.00037 37.2 9.9 36 257-292 75-110 (420)
127 PF05377 FlaC_arch: Flagella a 78.3 16 0.00034 27.5 7.2 32 257-288 2-33 (55)
128 KOG3119 Basic region leucine z 78.1 13 0.00028 35.5 8.6 47 241-287 208-254 (269)
129 PF05266 DUF724: Protein of un 78.1 36 0.00078 31.1 11.1 55 249-303 125-179 (190)
130 PF03962 Mnd1: Mnd1 family; I 78.0 18 0.00039 32.8 9.1 15 254-268 82-96 (188)
131 PF11180 DUF2968: Protein of u 77.8 39 0.00084 31.3 11.1 74 232-306 104-177 (192)
132 KOG3335 Predicted coiled-coil 77.7 5.2 0.00011 36.6 5.4 51 232-288 89-139 (181)
133 KOG0977 Nuclear envelope prote 77.7 14 0.0003 39.1 9.2 60 245-304 131-190 (546)
134 PF12711 Kinesin-relat_1: Kine 77.5 9.5 0.00021 31.0 6.4 20 284-303 45-64 (86)
135 PF10174 Cast: RIM-binding pro 77.5 8.8 0.00019 42.0 8.0 56 251-306 297-352 (775)
136 PF07798 DUF1640: Protein of u 77.3 11 0.00023 33.5 7.3 16 288-303 78-93 (177)
137 KOG2391 Vacuolar sorting prote 77.3 12 0.00026 37.5 8.2 25 274-298 251-275 (365)
138 PF08172 CASP_C: CASP C termin 77.1 11 0.00024 35.8 7.7 40 256-302 94-133 (248)
139 PF07716 bZIP_2: Basic region 76.8 7.4 0.00016 28.1 5.1 29 276-304 25-53 (54)
140 KOG1962 B-cell receptor-associ 75.9 23 0.0005 33.3 9.3 51 255-305 158-208 (216)
141 COG3074 Uncharacterized protei 75.8 22 0.00048 28.3 7.8 47 256-302 26-72 (79)
142 PF05837 CENP-H: Centromere pr 75.7 11 0.00024 31.0 6.6 48 256-304 18-65 (106)
143 PRK13729 conjugal transfer pil 75.4 11 0.00025 39.1 7.8 16 114-129 4-19 (475)
144 PF10473 CENP-F_leu_zip: Leuci 75.4 52 0.0011 28.9 10.9 38 267-304 57-94 (140)
145 PF04849 HAP1_N: HAP1 N-termin 75.2 17 0.00037 35.8 8.6 32 269-300 234-265 (306)
146 KOG3650 Predicted coiled-coil 75.1 14 0.00031 31.1 7.0 40 263-302 64-103 (120)
147 PF10211 Ax_dynein_light: Axon 75.1 36 0.00078 30.8 10.2 39 257-295 122-160 (189)
148 PF04977 DivIC: Septum formati 75.0 18 0.00038 27.1 7.0 27 276-302 24-50 (80)
149 PF10805 DUF2730: Protein of u 74.8 23 0.00049 29.3 8.1 44 260-303 47-92 (106)
150 PF09744 Jnk-SapK_ap_N: JNK_SA 74.6 23 0.00049 31.6 8.6 46 258-303 92-137 (158)
151 PF05700 BCAS2: Breast carcino 74.5 20 0.00044 33.0 8.6 45 260-304 173-217 (221)
152 PF05812 Herpes_BLRF2: Herpesv 74.3 5.6 0.00012 34.1 4.5 28 253-280 1-28 (118)
153 KOG2077 JNK/SAPK-associated pr 74.2 7.7 0.00017 41.4 6.3 48 258-305 325-372 (832)
154 PF04111 APG6: Autophagy prote 73.5 55 0.0012 31.9 11.7 49 255-303 78-126 (314)
155 PF10186 Atg14: UV radiation r 73.2 51 0.0011 30.3 10.9 25 255-279 70-94 (302)
156 PF07558 Shugoshin_N: Shugoshi 73.1 4.2 9E-05 29.1 2.9 34 266-299 11-44 (46)
157 KOG1853 LIS1-interacting prote 72.9 41 0.00088 32.9 10.3 20 285-304 93-112 (333)
158 PF04999 FtsL: Cell division p 72.5 13 0.00028 29.6 5.9 36 268-303 34-69 (97)
159 PF08317 Spc7: Spc7 kinetochor 72.3 18 0.0004 35.0 8.1 9 38-46 15-23 (325)
160 PF10224 DUF2205: Predicted co 72.1 24 0.00052 28.3 7.3 41 255-295 30-70 (80)
161 PHA02562 46 endonuclease subun 72.0 46 0.001 33.7 11.2 27 279-305 216-242 (562)
162 PF10506 MCC-bdg_PDZ: PDZ doma 71.5 16 0.00035 28.3 6.1 47 259-305 2-48 (67)
163 PF03980 Nnf1: Nnf1 ; InterPr 71.5 6.9 0.00015 31.9 4.3 30 253-282 78-107 (109)
164 PF05700 BCAS2: Breast carcino 71.4 26 0.00056 32.3 8.5 23 283-305 189-211 (221)
165 KOG2129 Uncharacterized conser 71.3 6.3 0.00014 40.6 4.8 48 258-305 46-93 (552)
166 KOG1103 Predicted coiled-coil 71.2 20 0.00044 36.4 8.2 61 244-304 227-287 (561)
167 PF00038 Filament: Intermediat 71.2 50 0.0011 31.1 10.6 41 264-304 211-251 (312)
168 TIGR02977 phageshock_pspA phag 71.2 34 0.00074 31.3 9.2 51 254-304 98-148 (219)
169 PF08537 NBP1: Fungal Nap bind 70.9 53 0.0012 32.7 10.9 68 233-300 121-220 (323)
170 PF07888 CALCOCO1: Calcium bin 70.9 52 0.0011 34.9 11.4 10 111-120 50-59 (546)
171 KOG0709 CREB/ATF family transc 70.7 13 0.00028 38.5 6.9 52 231-282 252-313 (472)
172 KOG4196 bZIP transcription fac 70.6 51 0.0011 29.0 9.5 41 263-303 75-115 (135)
173 KOG0250 DNA repair protein RAD 70.5 37 0.0008 38.6 10.7 54 252-305 369-423 (1074)
174 PF01166 TSC22: TSC-22/dip/bun 70.4 7.8 0.00017 29.6 4.0 20 256-275 22-41 (59)
175 PF04728 LPP: Lipoprotein leuc 70.0 45 0.00098 25.2 8.3 45 255-299 3-47 (56)
176 PF09730 BicD: Microtubule-ass 69.7 48 0.001 36.3 11.2 48 257-304 71-118 (717)
177 COG1579 Zn-ribbon protein, pos 69.6 46 0.001 31.7 9.9 51 254-304 88-138 (239)
178 PRK10803 tol-pal system protei 69.5 23 0.00049 33.6 7.9 45 252-296 58-102 (263)
179 PF04111 APG6: Autophagy prote 69.4 66 0.0014 31.4 11.2 65 239-303 69-133 (314)
180 PF11365 DUF3166: Protein of u 69.4 22 0.00047 29.5 6.7 20 284-303 23-42 (96)
181 PF01486 K-box: K-box region; 69.4 22 0.00047 28.6 6.7 31 270-300 69-99 (100)
182 KOG0250 DNA repair protein RAD 69.0 49 0.0011 37.7 11.3 67 239-305 363-430 (1074)
183 PF08317 Spc7: Spc7 kinetochor 68.9 90 0.002 30.3 12.0 49 257-305 151-199 (325)
184 COG1340 Uncharacterized archae 68.9 95 0.0021 30.6 12.0 73 233-305 25-98 (294)
185 PF00038 Filament: Intermediat 68.8 1E+02 0.0022 29.0 12.1 47 258-304 258-304 (312)
186 COG3883 Uncharacterized protei 68.8 24 0.00052 34.1 7.9 36 258-293 41-76 (265)
187 PF05377 FlaC_arch: Flagella a 68.7 21 0.00045 26.9 5.9 34 256-289 8-41 (55)
188 PF11544 Spc42p: Spindle pole 68.6 51 0.0011 26.4 8.4 46 258-303 8-53 (76)
189 PF07558 Shugoshin_N: Shugoshi 68.2 6.2 0.00013 28.3 2.9 42 236-278 3-44 (46)
190 PF08826 DMPK_coil: DMPK coile 68.0 25 0.00053 26.9 6.3 38 267-304 16-53 (61)
191 KOG0982 Centrosomal protein Nu 67.9 56 0.0012 33.9 10.6 49 257-305 299-347 (502)
192 KOG0999 Microtubule-associated 67.8 49 0.0011 35.5 10.4 74 231-304 114-191 (772)
193 COG2433 Uncharacterized conser 67.7 38 0.00082 36.5 9.7 32 255-286 436-467 (652)
194 PF04156 IncA: IncA protein; 67.6 30 0.00064 30.4 7.8 42 261-302 129-170 (191)
195 PF12808 Mto2_bdg: Micro-tubul 67.3 12 0.00026 27.8 4.4 25 258-282 25-49 (52)
196 smart00787 Spc7 Spc7 kinetocho 67.3 58 0.0013 31.9 10.4 61 227-290 200-260 (312)
197 PF09738 DUF2051: Double stran 67.3 28 0.00061 34.1 8.2 76 227-302 85-166 (302)
198 PF06785 UPF0242: Uncharacteri 67.2 58 0.0013 32.9 10.3 68 233-304 74-155 (401)
199 TIGR03752 conj_TIGR03752 integ 66.9 13 0.00028 38.6 6.0 23 283-305 116-138 (472)
200 KOG1318 Helix loop helix trans 66.7 68 0.0015 32.9 11.0 73 232-304 227-318 (411)
201 KOG0249 LAR-interacting protei 66.7 61 0.0013 35.8 11.0 43 262-304 216-258 (916)
202 PF11544 Spc42p: Spindle pole 66.7 11 0.00023 30.2 4.2 41 257-297 14-54 (76)
203 PF10482 CtIP_N: Tumour-suppre 66.5 39 0.00085 29.1 7.8 52 254-305 13-64 (120)
204 PF04340 DUF484: Protein of un 66.3 19 0.00041 32.8 6.5 42 258-303 43-84 (225)
205 PF10211 Ax_dynein_light: Axon 66.2 88 0.0019 28.3 10.7 34 253-286 125-158 (189)
206 TIGR02209 ftsL_broad cell divi 66.2 23 0.00049 27.1 6.0 35 269-303 24-58 (85)
207 PF06216 RTBV_P46: Rice tungro 65.7 37 0.0008 33.2 8.4 29 256-284 65-93 (389)
208 PF14662 CCDC155: Coiled-coil 65.5 33 0.00072 31.8 7.8 21 255-275 67-87 (193)
209 KOG0946 ER-Golgi vesicle-tethe 65.4 63 0.0014 36.1 10.9 63 238-300 654-716 (970)
210 PF04871 Uso1_p115_C: Uso1 / p 65.3 91 0.002 26.9 10.3 52 252-303 59-111 (136)
211 PF14988 DUF4515: Domain of un 65.3 68 0.0015 29.6 9.9 47 258-304 152-198 (206)
212 PF07412 Geminin: Geminin; In 65.3 24 0.00052 32.8 6.9 34 269-302 125-158 (200)
213 COG2433 Uncharacterized conser 65.3 26 0.00056 37.7 7.9 21 259-279 426-446 (652)
214 PF13815 Dzip-like_N: Iguana/D 65.2 27 0.00059 29.1 6.7 38 260-297 78-115 (118)
215 COG5570 Uncharacterized small 65.0 14 0.0003 27.9 4.3 51 255-305 5-55 (57)
216 PF15397 DUF4618: Domain of un 64.9 1E+02 0.0022 29.8 11.3 73 232-305 142-222 (258)
217 PF03670 UPF0184: Uncharacteri 64.8 54 0.0012 26.6 8.0 42 256-304 34-75 (83)
218 COG1792 MreC Cell shape-determ 64.6 22 0.00047 34.3 6.8 41 255-299 66-106 (284)
219 PF05600 DUF773: Protein of un 64.4 32 0.00069 35.8 8.4 50 252-301 443-492 (507)
220 PF05837 CENP-H: Centromere pr 64.1 28 0.00061 28.7 6.5 25 272-296 54-78 (106)
221 KOG0288 WD40 repeat protein Ti 64.1 94 0.002 32.2 11.3 28 253-280 46-73 (459)
222 PF10146 zf-C4H2: Zinc finger- 63.9 46 0.001 31.3 8.6 35 255-289 32-66 (230)
223 PF14282 FlxA: FlxA-like prote 63.9 40 0.00087 27.8 7.4 30 251-280 47-76 (106)
224 PRK14127 cell division protein 63.5 47 0.001 28.1 7.7 28 259-286 41-68 (109)
225 KOG4571 Activating transcripti 63.5 53 0.0012 32.3 9.1 59 231-289 228-289 (294)
226 PF03980 Nnf1: Nnf1 ; InterPr 62.8 17 0.00038 29.5 5.0 32 273-304 77-108 (109)
227 PRK10722 hypothetical protein; 62.4 57 0.0012 31.4 9.0 64 231-296 141-210 (247)
228 KOG1029 Endocytic adaptor prot 62.2 67 0.0015 35.9 10.4 18 288-305 435-452 (1118)
229 PF08232 Striatin: Striatin fa 62.1 29 0.00064 29.8 6.5 44 258-301 28-71 (134)
230 PF13805 Pil1: Eisosome compon 61.9 57 0.0012 31.7 9.0 70 232-305 125-194 (271)
231 PF06216 RTBV_P46: Rice tungro 61.8 41 0.00089 32.9 8.0 46 241-289 67-112 (389)
232 PF09738 DUF2051: Double stran 61.6 84 0.0018 30.8 10.3 48 258-305 115-162 (302)
233 TIGR02231 conserved hypothetic 61.5 86 0.0019 32.2 10.8 39 267-305 129-167 (525)
234 PTZ00454 26S protease regulato 61.5 34 0.00073 34.4 7.8 32 260-291 27-58 (398)
235 PF09789 DUF2353: Uncharacteri 61.4 50 0.0011 32.7 8.7 61 245-305 20-94 (319)
236 PF13118 DUF3972: Protein of u 61.2 33 0.00073 29.8 6.6 48 256-303 79-126 (126)
237 PF12777 MT: Microtubule-bindi 61.2 35 0.00077 33.3 7.7 44 261-304 234-277 (344)
238 KOG0980 Actin-binding protein 61.1 87 0.0019 35.2 11.1 68 238-305 449-516 (980)
239 PF04859 DUF641: Plant protein 61.1 28 0.00062 30.3 6.2 43 256-298 88-130 (131)
240 PF07889 DUF1664: Protein of u 60.9 95 0.0021 26.8 9.3 52 255-306 68-119 (126)
241 PF12711 Kinesin-relat_1: Kine 60.9 64 0.0014 26.3 7.8 42 263-306 45-86 (86)
242 COG3879 Uncharacterized protei 60.8 42 0.00092 32.2 7.8 14 290-303 89-102 (247)
243 KOG1853 LIS1-interacting prote 60.7 40 0.00088 32.9 7.7 24 280-303 56-79 (333)
244 KOG0995 Centromere-associated 60.7 37 0.00079 36.2 8.0 47 254-300 279-325 (581)
245 COG1196 Smc Chromosome segrega 60.6 75 0.0016 36.1 11.0 49 256-304 440-488 (1163)
246 PF15035 Rootletin: Ciliary ro 60.5 40 0.00086 30.6 7.3 28 260-287 86-113 (182)
247 PF04849 HAP1_N: HAP1 N-termin 60.5 44 0.00095 33.0 8.1 54 252-305 231-284 (306)
248 PRK11546 zraP zinc resistance 60.1 36 0.00079 30.0 6.8 20 284-303 90-109 (143)
249 PRK14160 heat shock protein Gr 59.6 41 0.00088 31.4 7.4 46 255-300 54-99 (211)
250 KOG4643 Uncharacterized coiled 59.5 40 0.00087 38.3 8.3 46 258-303 512-557 (1195)
251 PF09728 Taxilin: Myosin-like 59.4 44 0.00096 32.6 7.9 51 255-305 244-294 (309)
252 PF13863 DUF4200: Domain of un 59.4 97 0.0021 25.3 9.5 47 236-282 62-108 (126)
253 PRK10698 phage shock protein P 59.2 98 0.0021 28.7 9.9 50 255-304 99-148 (222)
254 KOG1103 Predicted coiled-coil 58.6 72 0.0016 32.6 9.3 48 256-303 133-180 (561)
255 KOG0804 Cytoplasmic Zn-finger 58.6 1E+02 0.0022 32.2 10.6 32 274-305 387-418 (493)
256 PF09726 Macoilin: Transmembra 58.1 1.2E+02 0.0025 33.2 11.4 12 34-46 189-200 (697)
257 PF11500 Cut12: Spindle pole b 58.0 91 0.002 27.9 9.0 56 233-288 83-138 (152)
258 PRK10963 hypothetical protein; 58.0 34 0.00074 31.5 6.6 15 270-284 69-83 (223)
259 KOG0243 Kinesin-like protein [ 58.0 53 0.0012 37.3 9.1 68 238-305 414-491 (1041)
260 PF04899 MbeD_MobD: MbeD/MobD 57.9 73 0.0016 24.9 7.4 33 257-289 30-62 (70)
261 PF08172 CASP_C: CASP C termin 57.8 38 0.00082 32.2 7.0 47 235-282 88-134 (248)
262 PF11180 DUF2968: Protein of u 57.8 1.2E+02 0.0025 28.3 9.8 38 255-292 147-184 (192)
263 PF07767 Nop53: Nop53 (60S rib 57.7 71 0.0015 31.6 9.2 38 230-267 272-309 (387)
264 PF05667 DUF812: Protein of un 57.6 51 0.0011 35.1 8.6 45 256-300 336-380 (594)
265 PF13942 Lipoprotein_20: YfhG 57.4 55 0.0012 30.0 7.6 52 244-297 114-165 (179)
266 KOG4360 Uncharacterized coiled 57.1 47 0.001 35.2 8.0 47 256-302 220-266 (596)
267 KOG0946 ER-Golgi vesicle-tethe 57.0 80 0.0017 35.3 10.0 15 31-45 386-400 (970)
268 COG2900 SlyX Uncharacterized p 56.9 76 0.0016 25.2 7.3 47 255-301 8-54 (72)
269 PRK04863 mukB cell division pr 56.8 1E+02 0.0023 36.4 11.5 20 234-253 321-340 (1486)
270 PRK02224 chromosome segregatio 56.5 1.3E+02 0.0029 32.5 11.7 46 259-304 353-398 (880)
271 KOG1029 Endocytic adaptor prot 56.4 1E+02 0.0023 34.5 10.6 24 281-304 435-458 (1118)
272 PF01486 K-box: K-box region; 56.2 59 0.0013 26.1 7.0 50 228-279 46-99 (100)
273 PF14817 HAUS5: HAUS augmin-li 56.2 66 0.0014 34.7 9.2 36 255-290 100-135 (632)
274 PF02403 Seryl_tRNA_N: Seryl-t 55.9 90 0.002 25.0 8.1 71 236-306 4-83 (108)
275 PF12709 Kinetocho_Slk19: Cent 55.7 95 0.0021 25.4 8.0 49 256-304 28-77 (87)
276 PHA03011 hypothetical protein; 55.7 79 0.0017 26.9 7.7 50 255-304 64-113 (120)
277 KOG4343 bZIP transcription fac 55.3 56 0.0012 34.9 8.2 28 255-282 309-336 (655)
278 PF06548 Kinesin-related: Kine 55.2 58 0.0013 34.0 8.2 51 255-305 385-470 (488)
279 KOG0995 Centromere-associated 55.2 74 0.0016 34.0 9.1 49 258-306 276-324 (581)
280 PF15369 KIAA1328: Uncharacter 55.1 1.9E+02 0.0041 29.0 11.4 57 229-287 3-65 (328)
281 PF04642 DUF601: Protein of un 54.9 12 0.00026 36.3 3.2 52 255-306 217-268 (311)
282 PF04012 PspA_IM30: PspA/IM30 54.5 1.4E+02 0.0029 27.0 9.8 40 259-298 102-141 (221)
283 PHA02675 ORF104 fusion protein 54.4 96 0.0021 25.5 7.7 18 288-305 63-80 (90)
284 COG2900 SlyX Uncharacterized p 54.3 1E+02 0.0022 24.5 7.7 33 257-289 24-56 (72)
285 PF13815 Dzip-like_N: Iguana/D 54.2 91 0.002 25.9 8.0 41 265-305 76-116 (118)
286 KOG0239 Kinesin (KAR3 subfamil 53.9 87 0.0019 34.0 9.7 15 290-304 300-314 (670)
287 KOG0933 Structural maintenance 53.8 1.3E+02 0.0029 34.4 11.1 42 264-305 817-858 (1174)
288 PF13851 GAS: Growth-arrest sp 53.4 1.8E+02 0.0039 26.6 11.6 29 275-303 92-120 (201)
289 PF04949 Transcrip_act: Transc 53.3 1.2E+02 0.0025 27.4 8.8 57 230-286 40-101 (159)
290 PF10828 DUF2570: Protein of u 53.3 1.3E+02 0.0028 24.8 9.5 49 257-305 34-82 (110)
291 KOG4403 Cell surface glycoprot 53.2 70 0.0015 33.5 8.4 68 234-305 242-317 (575)
292 PLN02939 transferase, transfer 53.1 86 0.0019 35.6 9.7 26 281-306 224-249 (977)
293 KOG3650 Predicted coiled-coil 53.1 40 0.00087 28.5 5.6 43 253-295 68-110 (120)
294 PF05622 HOOK: HOOK protein; 53.0 4.5 9.8E-05 43.2 0.0 55 251-305 321-378 (713)
295 PF15619 Lebercilin: Ciliary p 52.7 97 0.0021 28.4 8.6 34 273-306 154-187 (194)
296 KOG1319 bHLHZip transcription 52.6 1.4E+02 0.003 28.1 9.4 25 279-303 115-139 (229)
297 PF13874 Nup54: Nucleoporin co 52.5 1.5E+02 0.0033 25.4 9.4 49 257-305 67-122 (141)
298 PF14645 Chibby: Chibby family 52.4 56 0.0012 27.7 6.5 25 258-282 81-105 (116)
299 PF05335 DUF745: Protein of un 52.2 91 0.002 28.6 8.3 54 251-304 63-116 (188)
300 PF10146 zf-C4H2: Zinc finger- 52.2 93 0.002 29.3 8.6 51 254-304 49-102 (230)
301 PF05911 DUF869: Plant protein 52.2 51 0.0011 36.3 7.7 51 254-304 91-162 (769)
302 PF05667 DUF812: Protein of un 52.0 58 0.0013 34.8 7.9 14 112-125 239-252 (594)
303 KOG2264 Exostosin EXT1L [Signa 52.0 71 0.0015 34.6 8.4 47 255-301 93-139 (907)
304 PF06428 Sec2p: GDP/GTP exchan 51.8 17 0.00036 30.2 3.2 26 279-304 40-65 (100)
305 PF07047 OPA3: Optic atrophy 3 51.7 32 0.0007 29.4 5.0 37 232-274 95-131 (134)
306 PRK02224 chromosome segregatio 51.7 1.9E+02 0.0041 31.3 11.9 12 256-267 510-521 (880)
307 COG1340 Uncharacterized archae 51.1 1.5E+02 0.0032 29.3 10.0 48 258-305 30-77 (294)
308 PF06810 Phage_GP20: Phage min 51.1 1E+02 0.0022 27.2 8.1 37 257-293 29-68 (155)
309 PF15030 DUF4527: Protein of u 50.7 2.4E+02 0.0053 27.4 11.0 72 231-302 12-84 (277)
310 COG2919 Septum formation initi 50.5 1.5E+02 0.0032 24.8 10.0 23 280-302 61-83 (117)
311 PF04728 LPP: Lipoprotein leuc 50.3 1.1E+02 0.0024 23.2 7.0 39 257-298 12-50 (56)
312 PF15556 Zwint: ZW10 interacto 50.2 2.1E+02 0.0046 27.2 10.4 66 233-305 112-177 (252)
313 PF10226 DUF2216: Uncharacteri 50.2 1.7E+02 0.0038 27.2 9.7 59 230-288 19-81 (195)
314 PRK09413 IS2 repressor TnpA; R 50.1 43 0.00093 27.7 5.4 10 290-299 92-101 (121)
315 PF06632 XRCC4: DNA double-str 49.8 72 0.0016 31.8 7.7 14 109-122 61-74 (342)
316 PF04568 IATP: Mitochondrial A 49.5 1.1E+02 0.0023 25.6 7.5 47 239-285 53-99 (100)
317 PF10226 DUF2216: Uncharacteri 49.5 2.2E+02 0.0048 26.5 11.5 26 276-301 115-140 (195)
318 COG1196 Smc Chromosome segrega 49.4 1.5E+02 0.0032 33.9 11.0 6 274-279 402-407 (1163)
319 PF01920 Prefoldin_2: Prefoldi 49.3 58 0.0013 25.5 5.9 34 258-291 65-98 (106)
320 PF09727 CortBP2: Cortactin-bi 49.2 2.1E+02 0.0045 26.5 10.1 42 264-305 136-177 (192)
321 PRK14127 cell division protein 49.2 45 0.00098 28.1 5.4 39 255-293 30-68 (109)
322 PTZ00454 26S protease regulato 49.1 51 0.0011 33.1 6.7 40 264-303 24-63 (398)
323 PRK04863 mukB cell division pr 49.0 1.8E+02 0.004 34.4 11.9 8 259-266 359-366 (1486)
324 PF06698 DUF1192: Protein of u 48.9 63 0.0014 24.6 5.6 26 257-282 23-48 (59)
325 PRK14872 rod shape-determining 48.8 53 0.0011 32.8 6.6 40 256-299 58-97 (337)
326 TIGR00606 rad50 rad50. This fa 48.6 1.8E+02 0.0039 33.6 11.6 63 241-303 843-908 (1311)
327 PF04012 PspA_IM30: PspA/IM30 48.4 2.1E+02 0.0045 25.8 10.7 43 254-296 104-146 (221)
328 PHA03161 hypothetical protein; 48.4 1.3E+02 0.0029 26.9 8.4 25 258-282 57-81 (150)
329 PF05557 MAD: Mitotic checkpoi 48.1 82 0.0018 33.8 8.4 21 283-303 566-586 (722)
330 PF08232 Striatin: Striatin fa 48.1 1.4E+02 0.003 25.7 8.4 60 237-296 14-73 (134)
331 PF06428 Sec2p: GDP/GTP exchan 48.1 1.6E+02 0.0035 24.4 9.3 39 265-303 40-78 (100)
332 TIGR01010 BexC_CtrB_KpsE polys 47.7 1.3E+02 0.0029 29.1 9.2 12 110-121 65-76 (362)
333 PF13094 CENP-Q: CENP-Q, a CEN 47.6 82 0.0018 27.3 7.0 49 254-302 40-88 (160)
334 PF00261 Tropomyosin: Tropomyo 47.6 2.3E+02 0.005 26.2 12.3 47 257-303 171-217 (237)
335 PF10883 DUF2681: Protein of u 47.6 91 0.002 25.4 6.7 35 262-301 30-64 (87)
336 PF09486 HrpB7: Bacterial type 47.4 1E+02 0.0023 27.5 7.7 47 255-301 79-125 (158)
337 PF06424 PRP1_N: PRP1 splicing 47.1 13 0.00029 32.4 2.0 40 252-291 80-119 (133)
338 PF10241 KxDL: Uncharacterized 47.1 1.5E+02 0.0032 23.7 9.1 52 255-306 22-73 (88)
339 PF09325 Vps5: Vps5 C terminal 47.1 2.1E+02 0.0044 25.6 9.7 51 239-289 133-190 (236)
340 cd07596 BAR_SNX The Bin/Amphip 46.8 1.2E+02 0.0027 26.2 8.1 51 238-288 114-171 (218)
341 PRK05892 nucleoside diphosphat 46.7 1E+02 0.0022 27.3 7.5 49 257-305 13-69 (158)
342 PF07200 Mod_r: Modifier of ru 46.7 1.3E+02 0.0029 25.4 8.1 50 238-288 39-88 (150)
343 TIGR00606 rad50 rad50. This fa 46.5 2E+02 0.0043 33.3 11.6 10 37-46 663-672 (1311)
344 KOG0483 Transcription factor H 46.4 37 0.00079 31.4 4.8 37 266-302 109-145 (198)
345 PF06210 DUF1003: Protein of u 46.4 1.4E+02 0.003 25.1 7.8 52 239-295 55-106 (108)
346 KOG0239 Kinesin (KAR3 subfamil 46.0 2.2E+02 0.0048 31.0 11.2 48 257-304 243-290 (670)
347 PLN03188 kinesin-12 family pro 46.0 88 0.0019 36.5 8.5 42 264-305 1175-1240(1320)
348 PF13870 DUF4201: Domain of un 45.9 1.5E+02 0.0033 26.0 8.5 6 234-239 66-71 (177)
349 KOG0804 Cytoplasmic Zn-finger 45.9 75 0.0016 33.2 7.3 39 241-279 371-413 (493)
350 KOG3156 Uncharacterized membra 45.9 90 0.0019 29.6 7.3 23 283-305 116-138 (220)
351 COG1382 GimC Prefoldin, chaper 45.8 84 0.0018 27.1 6.6 39 252-290 67-105 (119)
352 PF07544 Med9: RNA polymerase 45.7 88 0.0019 24.7 6.3 24 282-305 58-81 (83)
353 PF04136 Sec34: Sec34-like fam 45.6 1.4E+02 0.003 26.2 8.2 51 256-306 22-72 (157)
354 PF13935 Ead_Ea22: Ead/Ea22-li 45.6 1.7E+02 0.0037 25.1 8.5 46 257-302 92-138 (139)
355 KOG2751 Beclin-like protein [S 45.6 1.9E+02 0.0041 30.1 10.0 61 245-305 154-219 (447)
356 PF10205 KLRAQ: Predicted coil 45.5 1.6E+02 0.0035 24.7 8.0 31 256-286 41-71 (102)
357 PF10168 Nup88: Nuclear pore c 45.5 2.2E+02 0.0047 31.2 11.2 19 283-301 600-618 (717)
358 PF03245 Phage_lysis: Bacterio 45.5 1.5E+02 0.0032 25.2 8.1 22 280-301 39-60 (125)
359 PRK10361 DNA recombination pro 45.4 2.7E+02 0.006 29.1 11.4 21 262-282 67-87 (475)
360 cd07666 BAR_SNX7 The Bin/Amphi 45.3 1.3E+02 0.0029 28.6 8.5 56 237-302 152-207 (243)
361 PRK10361 DNA recombination pro 45.1 3E+02 0.0066 28.8 11.6 21 257-277 69-89 (475)
362 cd07596 BAR_SNX The Bin/Amphip 45.0 2E+02 0.0044 24.8 11.4 27 248-274 110-136 (218)
363 COG4985 ABC-type phosphate tra 44.9 90 0.0019 30.2 7.2 22 278-299 223-244 (289)
364 KOG0996 Structural maintenance 44.8 1.8E+02 0.0039 33.8 10.6 16 32-47 159-174 (1293)
365 PF09744 Jnk-SapK_ap_N: JNK_SA 44.4 2.3E+02 0.005 25.3 10.7 18 265-282 85-102 (158)
366 PLN02678 seryl-tRNA synthetase 44.3 1.9E+02 0.0041 29.9 10.0 76 231-306 13-94 (448)
367 PF09766 FimP: Fms-interacting 44.1 1.2E+02 0.0025 30.2 8.2 50 249-298 102-151 (355)
368 PF15290 Syntaphilin: Golgi-lo 44.0 1.3E+02 0.0027 29.8 8.2 21 285-305 119-139 (305)
369 KOG2507 Ubiquitin regulatory p 43.9 1.7E+02 0.0037 30.6 9.5 35 269-303 243-277 (506)
370 KOG0288 WD40 repeat protein Ti 43.8 1.8E+02 0.0038 30.3 9.5 32 258-289 44-75 (459)
371 PF06419 COG6: Conserved oligo 43.6 2.7E+02 0.0058 29.7 11.3 51 255-305 45-95 (618)
372 KOG0161 Myosin class II heavy 43.5 2E+02 0.0044 35.1 11.2 27 279-305 1508-1534(1930)
373 PF09325 Vps5: Vps5 C terminal 43.3 1.9E+02 0.004 25.8 8.8 35 236-270 123-157 (236)
374 KOG2264 Exostosin EXT1L [Signa 43.3 2.8E+02 0.006 30.3 11.1 46 259-304 104-149 (907)
375 PF15136 UPF0449: Uncharacteri 43.2 1.2E+02 0.0026 25.3 6.9 39 263-301 58-96 (97)
376 PF00769 ERM: Ezrin/radixin/mo 43.2 2.2E+02 0.0048 26.8 9.6 10 290-299 103-112 (246)
377 PF10205 KLRAQ: Predicted coil 42.9 1.9E+02 0.0041 24.4 8.0 39 266-304 30-68 (102)
378 PRK15396 murein lipoprotein; P 42.8 1.7E+02 0.0038 23.3 7.7 39 256-294 26-64 (78)
379 COG1842 PspA Phage shock prote 42.3 1.5E+02 0.0033 27.8 8.3 10 292-301 122-131 (225)
380 PF12999 PRKCSH-like: Glucosid 42.1 2.4E+02 0.0051 25.9 9.2 36 247-282 138-173 (176)
381 PF10481 CENP-F_N: Cenp-F N-te 42.1 2.2E+02 0.0048 28.1 9.5 51 232-282 16-80 (307)
382 PF03962 Mnd1: Mnd1 family; I 41.8 1.5E+02 0.0031 27.0 7.9 19 283-301 110-128 (188)
383 KOG4807 F-actin binding protei 41.7 1.1E+02 0.0025 31.7 7.8 51 252-302 390-454 (593)
384 PF07200 Mod_r: Modifier of ru 41.7 2.2E+02 0.0047 24.1 8.8 54 238-291 31-84 (150)
385 PRK10920 putative uroporphyrin 41.7 1.8E+02 0.0039 29.6 9.2 29 261-289 98-126 (390)
386 PF03234 CDC37_N: Cdc37 N term 41.7 1.9E+02 0.0041 26.3 8.6 29 254-282 45-73 (177)
387 smart00787 Spc7 Spc7 kinetocho 41.7 3.5E+02 0.0076 26.5 12.1 47 258-304 147-193 (312)
388 KOG4674 Uncharacterized conser 41.7 1.3E+02 0.0027 36.5 9.1 58 247-304 1235-1292(1822)
389 PF03961 DUF342: Protein of un 41.6 1.1E+02 0.0024 30.9 7.8 28 274-301 380-407 (451)
390 PRK14143 heat shock protein Gr 41.1 85 0.0018 29.8 6.5 24 256-279 82-105 (238)
391 PRK13923 putative spore coat p 41.1 81 0.0018 28.7 6.1 43 254-296 110-155 (170)
392 KOG0978 E3 ubiquitin ligase in 41.0 1.8E+02 0.004 31.9 9.7 58 246-303 564-621 (698)
393 TIGR01554 major_cap_HK97 phage 40.9 1.8E+02 0.004 28.4 9.0 25 256-280 35-59 (378)
394 PF09730 BicD: Microtubule-ass 40.9 1.2E+02 0.0027 33.2 8.4 42 262-303 48-89 (717)
395 PF08781 DP: Transcription fac 40.7 1.7E+02 0.0036 25.9 7.8 19 250-268 17-35 (142)
396 PF10498 IFT57: Intra-flagella 40.6 3.4E+02 0.0075 27.2 11.0 43 262-304 266-308 (359)
397 PF08606 Prp19: Prp19/Pso4-lik 40.4 51 0.0011 26.0 4.1 33 256-288 9-41 (70)
398 PF02388 FemAB: FemAB family; 40.3 88 0.0019 31.3 6.8 25 254-278 241-265 (406)
399 KOG0976 Rho/Rac1-interacting s 40.3 2.2E+02 0.0048 32.2 10.1 88 219-306 311-402 (1265)
400 KOG0999 Microtubule-associated 39.9 1E+02 0.0022 33.3 7.4 46 259-304 167-215 (772)
401 PF05531 NPV_P10: Nucleopolyhe 39.8 1.5E+02 0.0033 23.6 6.7 50 255-304 11-63 (75)
402 PRK10929 putative mechanosensi 39.6 2.9E+02 0.0062 32.0 11.3 40 265-304 261-300 (1109)
403 KOG4360 Uncharacterized coiled 39.6 1.3E+02 0.0028 32.1 8.0 55 251-305 194-248 (596)
404 COG4372 Uncharacterized protei 39.5 4.6E+02 0.01 27.3 11.7 42 255-296 137-178 (499)
405 COG1382 GimC Prefoldin, chaper 39.4 89 0.0019 26.9 5.7 36 255-290 77-112 (119)
406 COG4372 Uncharacterized protei 39.3 2.5E+02 0.0054 29.2 9.7 37 242-278 131-167 (499)
407 KOG0161 Myosin class II heavy 39.2 2.2E+02 0.0049 34.8 10.7 66 239-304 1644-1709(1930)
408 PF11382 DUF3186: Protein of u 38.7 98 0.0021 30.0 6.7 34 255-288 32-65 (308)
409 PF06818 Fez1: Fez1; InterPro 38.6 88 0.0019 29.2 6.0 29 253-281 78-106 (202)
410 TIGR03185 DNA_S_dndD DNA sulfu 38.6 4.1E+02 0.0088 28.2 11.7 8 39-46 67-74 (650)
411 KOG4001 Axonemal dynein light 38.4 2.5E+02 0.0054 26.8 8.9 19 284-302 236-254 (259)
412 PRK10636 putative ABC transpor 38.3 1.7E+02 0.0036 31.0 8.8 48 255-302 563-617 (638)
413 PF01763 Herpes_UL6: Herpesvir 38.3 1.1E+02 0.0025 32.5 7.5 44 255-298 363-406 (557)
414 TIGR03007 pepcterm_ChnLen poly 38.3 2.5E+02 0.0055 28.2 9.8 51 255-305 175-233 (498)
415 PRK11239 hypothetical protein; 38.0 57 0.0012 30.7 4.7 28 258-285 186-213 (215)
416 PF12777 MT: Microtubule-bindi 37.9 63 0.0014 31.6 5.3 42 243-284 230-271 (344)
417 TIGR02680 conserved hypothetic 37.8 3.4E+02 0.0073 31.8 11.7 62 243-304 870-935 (1353)
418 PF12999 PRKCSH-like: Glucosid 37.7 1.9E+02 0.0041 26.5 7.9 19 285-303 155-173 (176)
419 PF14915 CCDC144C: CCDC144C pr 37.7 3.9E+02 0.0084 26.6 10.5 29 258-286 217-245 (305)
420 TIGR02231 conserved hypothetic 37.5 3.7E+02 0.0081 27.6 11.0 46 258-303 127-172 (525)
421 KOG0933 Structural maintenance 37.4 3.5E+02 0.0077 31.2 11.2 46 256-301 816-861 (1174)
422 PF08961 DUF1875: Domain of un 37.4 11 0.00024 35.8 0.0 41 255-295 122-162 (243)
423 PRK11147 ABC transporter ATPas 37.4 1.2E+02 0.0027 31.8 7.7 48 257-304 570-623 (635)
424 PF11853 DUF3373: Protein of u 37.3 28 0.00061 36.4 2.9 25 256-280 32-56 (489)
425 KOG1265 Phospholipase C [Lipid 37.3 5.4E+02 0.012 29.6 12.5 72 232-303 1026-1102(1189)
426 COG3352 FlaC Putative archaeal 37.3 2E+02 0.0043 26.0 7.7 49 255-303 79-128 (157)
427 KOG1691 emp24/gp25L/p24 family 37.1 1E+02 0.0023 28.9 6.3 51 252-302 131-181 (210)
428 PF15397 DUF4618: Domain of un 37.1 2.9E+02 0.0063 26.7 9.5 37 246-282 72-108 (258)
429 PF14712 Snapin_Pallidin: Snap 37.0 2E+02 0.0043 22.4 7.1 30 257-286 16-45 (92)
430 PF07111 HCR: Alpha helical co 36.9 3.5E+02 0.0075 30.0 10.8 42 248-289 507-548 (739)
431 PF08912 Rho_Binding: Rho Bind 36.9 1.7E+02 0.0037 23.0 6.5 30 261-290 2-31 (69)
432 KOG2010 Double stranded RNA bi 36.9 1.6E+02 0.0035 29.8 7.8 67 232-301 125-200 (405)
433 TIGR01069 mutS2 MutS2 family p 36.8 2.1E+02 0.0045 31.5 9.4 9 67-75 328-336 (771)
434 KOG4797 Transcriptional regula 36.7 77 0.0017 27.2 4.9 21 255-275 74-94 (123)
435 smart00340 HALZ homeobox assoc 36.4 85 0.0018 22.7 4.3 25 258-282 8-32 (44)
436 PF04375 HemX: HemX; InterPro 36.2 1.7E+02 0.0036 29.1 8.0 44 259-302 90-135 (372)
437 KOG2185 Predicted RNA-processi 36.1 1.7E+02 0.0037 30.4 8.0 39 241-279 399-437 (486)
438 TIGR01005 eps_transp_fam exopo 36.1 2E+02 0.0044 30.8 9.1 21 285-305 347-367 (754)
439 KOG3564 GTPase-activating prot 36.1 1.9E+02 0.0042 30.7 8.6 73 230-305 27-99 (604)
440 KOG0996 Structural maintenance 36.0 1.8E+02 0.0039 33.9 8.9 48 258-305 538-585 (1293)
441 PF14645 Chibby: Chibby family 35.9 1.8E+02 0.0039 24.6 7.0 43 257-299 73-115 (116)
442 PRK15178 Vi polysaccharide exp 35.9 1.1E+02 0.0025 31.5 6.9 45 262-306 286-337 (434)
443 KOG0964 Structural maintenance 35.8 3.3E+02 0.0072 31.4 10.7 54 249-302 412-465 (1200)
444 PF03961 DUF342: Protein of un 35.6 1.8E+02 0.004 29.3 8.3 33 273-305 372-404 (451)
445 KOG0982 Centrosomal protein Nu 35.5 2.2E+02 0.0047 29.9 8.7 51 253-303 372-430 (502)
446 PF00769 ERM: Ezrin/radixin/mo 35.5 3.4E+02 0.0075 25.5 9.6 30 274-303 80-109 (246)
447 cd07429 Cby_like Chibby, a nuc 35.4 72 0.0016 27.0 4.5 24 259-282 76-99 (108)
448 KOG0971 Microtubule-associated 35.3 1.5E+02 0.0033 33.8 8.0 50 255-304 325-389 (1243)
449 TIGR01834 PHA_synth_III_E poly 35.3 2.5E+02 0.0055 28.0 8.9 33 274-306 287-319 (320)
450 PF08248 Tryp_FSAP: Tryptophyl 35.3 18 0.0004 19.4 0.6 7 12-18 2-8 (12)
451 PF07889 DUF1664: Protein of u 35.2 1.9E+02 0.0042 25.0 7.2 10 234-243 60-69 (126)
452 KOG4807 F-actin binding protei 35.2 1.6E+02 0.0034 30.7 7.6 51 254-304 417-477 (593)
453 PF05278 PEARLI-4: Arabidopsis 35.1 4.4E+02 0.0095 25.7 11.5 35 261-295 206-240 (269)
454 KOG2391 Vacuolar sorting prote 35.1 3.2E+02 0.007 27.7 9.6 23 260-282 251-273 (365)
455 PRK09413 IS2 repressor TnpA; R 35.1 1E+02 0.0022 25.5 5.4 25 256-280 79-103 (121)
456 PF13805 Pil1: Eisosome compon 35.0 1E+02 0.0022 30.0 6.1 54 232-285 142-195 (271)
457 PRK13923 putative spore coat p 34.9 1.2E+02 0.0027 27.5 6.3 33 254-286 117-149 (170)
458 PF14282 FlxA: FlxA-like prote 34.9 1.2E+02 0.0026 25.0 5.8 9 260-268 31-39 (106)
459 PF10168 Nup88: Nuclear pore c 34.9 2.1E+02 0.0045 31.3 9.0 34 256-289 580-613 (717)
460 PF10046 BLOC1_2: Biogenesis o 34.7 2.5E+02 0.0053 22.7 10.0 72 232-306 22-96 (99)
461 PF11577 NEMO: NF-kappa-B esse 34.7 1.1E+02 0.0024 23.8 5.2 16 261-276 5-20 (68)
462 PRK13922 rod shape-determining 34.7 98 0.0021 28.9 5.9 39 262-304 69-107 (276)
463 TIGR03545 conserved hypothetic 34.6 1.4E+02 0.003 31.7 7.5 39 232-270 165-206 (555)
464 PF04136 Sec34: Sec34-like fam 34.3 3E+02 0.0065 24.2 8.5 48 255-302 7-54 (157)
465 KOG0612 Rho-associated, coiled 34.2 3.9E+02 0.0085 31.4 11.1 75 232-306 471-548 (1317)
466 TIGR01000 bacteriocin_acc bact 34.2 3.6E+02 0.0078 27.2 10.1 26 107-132 88-116 (457)
467 PF07407 Seadorna_VP6: Seadorn 33.9 1.4E+02 0.0031 30.2 7.0 15 255-269 46-60 (420)
468 PF14723 SSFA2_C: Sperm-specif 33.9 2.5E+02 0.0055 25.8 8.0 24 263-286 146-169 (179)
469 COG1729 Uncharacterized protei 33.9 1E+02 0.0022 29.8 5.9 20 257-276 58-77 (262)
470 KOG4001 Axonemal dynein light 33.8 2.2E+02 0.0048 27.1 7.8 55 243-297 169-227 (259)
471 TIGR00414 serS seryl-tRNA synt 33.8 1.4E+02 0.0031 30.2 7.2 52 255-306 37-92 (418)
472 KOG0243 Kinesin-like protein [ 33.7 4.1E+02 0.0089 30.6 11.1 21 112-132 240-260 (1041)
473 PF10779 XhlA: Haemolysin XhlA 33.6 2.1E+02 0.0046 21.7 7.2 48 257-304 1-48 (71)
474 TIGR03007 pepcterm_ChnLen poly 33.3 2.6E+02 0.0056 28.2 9.0 74 233-306 203-291 (498)
475 TIGR01461 greB transcription e 33.2 1.5E+02 0.0033 26.0 6.4 50 257-306 10-68 (156)
476 PRK14011 prefoldin subunit alp 33.1 2.3E+02 0.005 24.8 7.5 46 257-305 90-135 (144)
477 PF02403 Seryl_tRNA_N: Seryl-t 33.0 2.5E+02 0.0055 22.4 10.4 78 229-306 24-104 (108)
478 KOG0612 Rho-associated, coiled 32.7 4E+02 0.0088 31.3 10.9 72 231-304 479-550 (1317)
479 PRK00409 recombination and DNA 32.7 2.5E+02 0.0054 30.9 9.2 59 247-305 505-563 (782)
480 PF13166 AAA_13: AAA domain 32.6 4.9E+02 0.011 27.4 11.2 71 234-306 384-454 (712)
481 PF14775 NYD-SP28_assoc: Sperm 32.6 2.2E+02 0.0047 21.4 7.6 47 254-301 12-58 (60)
482 PF09403 FadA: Adhesion protei 32.5 2.9E+02 0.0062 23.9 7.8 51 256-306 28-78 (126)
483 cd07429 Cby_like Chibby, a nuc 32.4 1E+02 0.0022 26.1 5.0 37 255-291 72-108 (108)
484 KOG1937 Uncharacterized conser 32.4 4.8E+02 0.01 27.6 10.6 69 232-300 410-519 (521)
485 KOG4348 Adaptor protein CMS/SE 32.3 1.9E+02 0.0041 30.5 7.7 54 253-306 567-624 (627)
486 PF10234 Cluap1: Clusterin-ass 32.3 2.6E+02 0.0056 27.1 8.3 51 254-304 168-218 (267)
487 KOG4643 Uncharacterized coiled 32.3 4E+02 0.0086 30.9 10.6 70 234-303 373-442 (1195)
488 PF05701 WEMBL: Weak chloropla 32.3 2.9E+02 0.0062 28.8 9.3 63 244-306 291-353 (522)
489 KOG4673 Transcription factor T 32.3 2.9E+02 0.0062 30.8 9.3 71 236-306 525-596 (961)
490 PF15030 DUF4527: Protein of u 32.3 2.5E+02 0.0054 27.3 8.0 50 256-305 17-66 (277)
491 TIGR01005 eps_transp_fam exopo 32.2 4.7E+02 0.01 28.0 11.1 71 236-306 182-267 (754)
492 TIGR03495 phage_LysB phage lys 32.2 3E+02 0.0064 24.1 8.0 53 254-306 25-77 (135)
493 TIGR02977 phageshock_pspA phag 32.0 4E+02 0.0087 24.3 10.8 65 236-300 87-151 (219)
494 PHA02047 phage lambda Rz1-like 31.9 2.8E+02 0.006 23.4 7.3 45 254-301 33-77 (101)
495 KOG0561 bHLH transcription fac 31.9 80 0.0017 31.6 4.9 67 233-301 56-175 (373)
496 cd07599 BAR_Rvs167p The Bin/Am 31.8 2.6E+02 0.0056 25.2 7.9 69 234-302 110-179 (216)
497 PF14362 DUF4407: Domain of un 31.7 4.5E+02 0.0097 24.8 10.9 74 233-306 111-205 (301)
498 KOG0483 Transcription factor H 31.7 69 0.0015 29.7 4.2 36 271-306 107-142 (198)
499 KOG0971 Microtubule-associated 31.7 5.3E+02 0.012 29.7 11.4 72 233-304 282-353 (1243)
500 PRK13979 DNA topoisomerase IV 31.7 1.1E+02 0.0024 34.5 6.5 51 253-305 439-489 (957)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.38 E-value=3.4e-12 Score=95.75 Aligned_cols=61 Identities=41% Similarity=0.566 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~EN 292 (306)
+.|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999988777666666554
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.36 E-value=5.2e-12 Score=94.61 Aligned_cols=61 Identities=39% Similarity=0.571 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~EN 292 (306)
+.|+.+|+++||+||++||.||++|+.+|+.+|..|..+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999999999999999888888887
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.28 E-value=6.8e-12 Score=126.83 Aligned_cols=70 Identities=36% Similarity=0.424 Sum_probs=67.3
Q ss_pred cCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 227 ~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
.+|++-.||+.|||+|||||..||+|||+|+..||.+++.|..||..|++++..|++++..+..||.+||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 4677889999999999999999999999999999999999999999999999999999999999999986
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.25 E-value=3.6e-11 Score=111.92 Aligned_cols=76 Identities=28% Similarity=0.401 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
-|+|-+||++|||.+|+-+|-|||++++++|.+|.+|..||..|+.++..|+.+.+.|.++|..|.+.++.||..|
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999888753
No 5
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.14 E-value=4.7e-11 Score=119.23 Aligned_cols=70 Identities=33% Similarity=0.457 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+...||.||||+|++|||.||+|||+|++.||.+|.....||++|.+++. .|+.+|+.|-+++..|++.|
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999888776 57789999999999998764
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.14 E-value=8.3e-11 Score=111.95 Aligned_cols=60 Identities=28% Similarity=0.491 Sum_probs=55.1
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (306)
Q Consensus 228 ~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~ 287 (306)
.|+.-+||.-|++||||+||.+|+|||+|+++||.+|.-|+.+|..|-.+|..|++-|..
T Consensus 285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 345568999999999999999999999999999999999999999999999999887764
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.06 E-value=1.2e-09 Score=79.72 Aligned_cols=51 Identities=39% Similarity=0.629 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
+.++.||+ +||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888 9999999999999999999999999999999999998887764
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.17 E-value=2.6e-08 Score=79.89 Aligned_cols=62 Identities=35% Similarity=0.455 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~EN 292 (306)
.+.|..||.++||.+|+.||.||..++.+||.++..|+.+...|..++..+...+..+...+
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~ 88 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKL 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999988887777777766665554443333
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.06 E-value=1.5e-05 Score=75.46 Aligned_cols=56 Identities=27% Similarity=0.461 Sum_probs=46.3
Q ss_pred HHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRA-RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (306)
Q Consensus 232 e~KR~-RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~ 287 (306)
+..|. |..++||++|.+||.||.+||..||.+|..|..+|..|-..+..|+++...
T Consensus 203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e 259 (279)
T KOG0837|consen 203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAE 259 (279)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 44444 448999999999999999999999999999999999888877766554433
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.56 E-value=0.0011 Score=63.76 Aligned_cols=65 Identities=25% Similarity=0.270 Sum_probs=50.0
Q ss_pred HHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 233 ~KR~RR-~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.|+.|| .+.|..+|-|.|.||++..+.|+.++..|+.+|.+|+.++.. ++.|=+.||+=|.....
T Consensus 225 ~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~-------lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 225 EKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASE-------LEREIRYLKQLILEVYK 290 (294)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 344444 556666799999999999999999999999999999888775 55566666666655543
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.27 E-value=0.0026 Score=54.96 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
-.|..||-|+||=-|+-+|-|+.+.-.+||.+...|..+...|+.++..+..
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999988888876555555544444444444333
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.95 E-value=0.0037 Score=59.36 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=44.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
|+-+|=+++||||.+.|....++..+|..|+.||..|+.++.+|++++..+.
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345889999999999999999999999999999999999987776555443
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.71 E-value=0.0026 Score=66.49 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=51.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
|=.||+=|||.+|+++|+||...|..||..|..|+.|-..|+++-.. +...-.++++++..|-.+
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~-------~d~~L~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDE-------LDSTLGVMKQQLSELYQE 554 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 44578889999999999999999999999999999999888776543 444555666666666543
No 14
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.02 E-value=0.024 Score=40.61 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 266 ~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+|+.+...|+.....|...|..|..||..|+++|..|+.++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57788888889999999999999999999999999999875
No 15
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.88 E-value=0.051 Score=41.91 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
|..|+.+|.+|-.....|+.++..|.++...+..|++.|..+.+.=|.||
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777777777777777777777766666554
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.81 E-value=0.081 Score=41.33 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+-++.||.+|..+-..+..|+.++..|+++...+..+|..|+.+...|+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3467788877777666666666666666665555555555555555554
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.32 E-value=0.1 Score=43.64 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+..||.++..|-.+...|+.++..|.++...|..||..||..+..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888888888888888888888888888888888888888877653
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.28 E-value=0.1 Score=43.92 Aligned_cols=49 Identities=27% Similarity=0.374 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
..+..||.++..|-.+...|+..+..|-++...|..||..||..+..+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577888888888888888888888888888888888888888888763
No 19
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.25 E-value=0.056 Score=55.43 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..+++||.+++.|+.|.+.|.+++..+++++..++.||+.|+.+++.+..+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 467899999999999999999999999999999999999999999877654
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.66 E-value=0.16 Score=42.52 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+|=.++..|+.....|..++..|+.++..+..||..|+.+-+.||.+|
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999874
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.33 E-value=0.33 Score=44.71 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
++.+..++.++..|+.+|+.|..++..++.+...+..+|..++.+
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666666666655544
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.28 E-value=0.23 Score=39.21 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
-+.=|.-+|+.|+.+|+.|..+...+++....|..+|..|+.+-...+.+
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778899999999999999999999999999999999887666554
No 23
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.20 E-value=0.36 Score=37.73 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+..+=..+..|+.|+..|+.++..|.+....|..+|..|+.+-.....+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666677777777777777776666554
No 24
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.15 E-value=1.2 Score=40.08 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
...++++.+...+..-+.-.......|.+++.-+..|..|...|.-++..+.+++..+..||+.|-.+.-...
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777788899999999999999999999999999999999999999977665443
No 25
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.10 E-value=0.24 Score=41.73 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.+|=.++..|+.....|..++..|++.+..+..||..|+.+-..||.+|
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999999999999999999999999999999988864
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.89 E-value=0.88 Score=41.97 Aligned_cols=53 Identities=6% Similarity=0.028 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
-+++..+|+.++..+..+...|..++..|++++..+..+|+.|++++..++..
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888899999999999999999999999999888754
No 27
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=93.77 E-value=0.32 Score=41.20 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.+|..|+.....|.+++..|++++..+..||..|+-+-+.||.+|
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 445555555556666666666666677777777777777776654
No 28
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.73 E-value=0.34 Score=43.41 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
....|+.||..|..++..|++++..|..+|..|.+++..+.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777777777777766666554
No 29
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.53 E-value=0.55 Score=36.39 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l-------~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+++-|..++...+.+|..|..+- ..+-..+..|..||..|+.++..+|.
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555555555554 44444555555555555555554443
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.03 E-value=0.9 Score=35.11 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.++.|=..+..|+.||..|+.++..+...-..|...|..=+.+|+.|=.+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999999999999999999999887554
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.67 E-value=0.6 Score=37.41 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.=|.-+|+.|+.+|..|..++..+......|..+|..|+++......||
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666668888888888877666553
No 32
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.61 E-value=0.6 Score=36.69 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~--------~l~~ENr~Lraql~~Lrak 305 (306)
|.+++.++..|+.||-.|+-++--|.+++. .+..+|-.|+.++..|+..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e 58 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE 58 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999988888887776 3467777788877777654
No 33
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.54 E-value=0.95 Score=36.22 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
++|..++..|+.....|..++..++..+..|..||..|+.=|..|-+
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888899999999999999999999999998887743
No 34
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.35 E-value=1.2 Score=34.15 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
++|.+||.++..++.-...|...+..-++++..|..+.+.|..++..++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999999888888888776
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.08 E-value=4.3 Score=34.75 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
..+..|=...|+..-....++..-+..|+..+..|+.++..+..++..+..+...+..+++.+...+.
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777777766666666666666666666666666555555555555444443333
No 36
>PRK11637 AmiB activator; Provisional
Probab=90.90 E-value=2.9 Score=41.65 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..-...+..|+.++..++.+...+..++..+++++..+..+=..|+.++..++.
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666555555556666565555555555555555555543
No 37
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=90.60 E-value=0.59 Score=44.75 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYD----ESAVNNRILKADIE 300 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~----~l~~ENr~Lraql~ 300 (306)
.+.+|+.||..|++++..|++++. .+..||++||+-+.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666666555533333 48899999988553
No 38
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.45 E-value=1.2 Score=37.81 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
..+.+||.++..|-.+...|++.+..|-++...|..||..||.++..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999998865
No 39
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.33 E-value=5.7 Score=32.08 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
-.+|..+.+.+=+++=..|.-+.....+|+.++..|....+.|-.+|.....++..++.-|+.+...|...
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999888888888888999999999999999999999999999999999999888777654
No 40
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.00 E-value=2.6 Score=36.17 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSS 273 (306)
Q Consensus 260 LE~qV~~Le~EN~~ 273 (306)
|+.++..++.+...
T Consensus 78 L~~~~~~~ere~~~ 91 (151)
T PF11559_consen 78 LKEQLEELERELAS 91 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 41
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.00 E-value=2.3 Score=32.90 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021874 287 ESAVNNRILKADIETLRA 304 (306)
Q Consensus 287 ~l~~ENr~Lraql~~Lra 304 (306)
.+-.+|..|+.+++.|+.
T Consensus 44 ~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 44 DAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455556666665554
No 42
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.95 E-value=2.4 Score=35.78 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=42.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
.-+..-+..-.|..+-|+..=...-++|+..+..|+.++..+.+++.+|+.++..+...
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776666667788888888888888877777777777665543
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.17 E-value=4.4 Score=42.63 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=44.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
...+++...........-+.++..|+.++...+.++..|..+...+......+..|+..|+.+...++.|
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666777766666666666666666666666666666666666666655554
No 44
>smart00340 HALZ homeobox associated leucin zipper.
Probab=89.14 E-value=0.8 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.|++-+..|..||++|+.+++.||+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677889999999999999986
No 45
>PRK02119 hypothetical protein; Provisional
Probab=88.81 E-value=3 Score=32.51 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.+++.+||.++..++.-...|...+..-++++..+..+-+.|..++..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35788999999999888888888888888888888888888888877765
No 46
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.47 E-value=2.9 Score=33.54 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~ 294 (306)
+-++.||.+|.+.-..+.-|.-++.+|+++...+..++..
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888777777766777777766666666666555
No 47
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.44 E-value=1.9 Score=44.52 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
+..|..+-+.|+.||+.|+++...+.+++.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 456666677777777777665544444433
No 48
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=88.42 E-value=0.022 Score=56.75 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=48.9
Q ss_pred CchHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 021874 229 DSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLTDVNQK 284 (306)
Q Consensus 229 d~~e~KR~RR~lsNRESArR---SR~RKk~~l~eLE~qV~~Le-~EN~~L~~~l~~L~qk 284 (306)
...+.|+.+|+++|+.+|.+ +|.||+.+...|..+|+.|+ .++..|..++..|+..
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne 208 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNE 208 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccH
Confidence 34688999999999999999 99999999999999999999 8888877776655433
No 49
>PRK11637 AmiB activator; Provisional
Probab=88.28 E-value=6.2 Score=39.38 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+......+..+.+++.++..|..+...+..++..+++++..+..+=..|+.+|..++++
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555666666666666666666666666666666666666666666666654
No 50
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.97 E-value=4.2 Score=31.12 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
|+.++..|+....-+-..++.|+.-+..-..+-..|+.++..|+.||
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788887777777788887777777777777888887777765
No 51
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.83 E-value=2 Score=42.86 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
-=.|-+.+...||.-+.+++.||+.|.-+|..+.+++.+.+.|+..|..++.+-+
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 3456678888999999999999999999999999999999999999977765544
No 52
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.63 E-value=3.3 Score=39.54 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
..++++..+...|..+|..|..++..++.++..+..||..|...+..|
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555566666666666666777777777777788887776554443
No 53
>PRK04406 hypothetical protein; Provisional
Probab=87.45 E-value=4.1 Score=32.01 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+++.+||.++..++.-...|...+..-++++..|..+=+.|..++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888888888877777777777777777777777777766666554
No 54
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.25 E-value=4.4 Score=31.48 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
++|.+||.++..++.-...|...+..-++++..+..+=+.|..++..++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57888999999888888888888888888888888877777777776653
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.12 E-value=2.2 Score=37.31 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l--~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.+.+|+.++..|+.|...|...+ .+|......+..++..|..+++.|+.
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666654 56667777777777777777777764
No 56
>PRK02119 hypothetical protein; Provisional
Probab=87.09 E-value=4.1 Score=31.77 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+..++.++..|+.....+-..+..|+.-+..-..+-..|+.++..|..||
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888888887653
No 57
>PRK00295 hypothetical protein; Provisional
Probab=87.06 E-value=5.3 Score=30.69 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+++.+||.++..++.-...|...+..-++++..+..+=+.|..++..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999988888888888888888888877777777776654
No 58
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=87.02 E-value=8.4 Score=37.04 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESA--RRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 231 ~e~KR~RR~lsNRESA--rRSR~RKk-~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+.||+|-++.---+- ++.|+-+. ..+.+|+.+-+.|+.||..|+.....|-.+.+.+..+-..|++++..|..
T Consensus 70 ~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 4677777444322111 22233333 34689999999999999999999999999999999998888888887754
No 59
>PF15294 Leu_zip: Leucine zipper
Probab=86.76 E-value=2.3 Score=41.16 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
|..++..|+.||..|+.++..++.++..+.-|+..|..++..||.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999999999999999999999999999999888875
No 60
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.71 E-value=3.4 Score=43.49 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 021874 247 RRSRRRKQAHLNELE-------TQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 247 rRSR~RKk~~l~eLE-------~qV~~Le~EN~~L~~~l~~L~ 282 (306)
|.+|.|-|++|.+|- .+|..|+.||..|...+..|+
T Consensus 34 r~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr 76 (546)
T KOG0977|consen 34 RDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLR 76 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777766 567778888888887776655
No 61
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.46 E-value=1.5 Score=31.34 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021874 281 VNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 281 L~qk~~~l~~ENr~Lraql~~L 302 (306)
|+..|..|..+|..|+.+.+.|
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L 31 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKL 31 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 62
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.37 E-value=4.3 Score=35.28 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
+.|+.++..|+.++..+-.+|..|+.++..+..+=..|..++
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333333333
No 63
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.32 E-value=12 Score=31.93 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.++..|+.+...|..+...+-+=|-...-++..|+.+|..|+.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555556788888888888864
No 64
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.29 E-value=3.2 Score=36.26 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
--.++|..++..|+.++..|..+|..|+.
T Consensus 109 ~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 109 PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33467777777788887777777777764
No 65
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=86.13 E-value=2.6 Score=31.32 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
|++..|.+|+.+...=+ | .=...-....+++..+..||+.|++++..++.
T Consensus 1 kw~~Rl~ELe~klkaer-E--~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-E--ARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH-H--hccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788887765433 2 11122345667778899999999999988875
No 66
>PRK04325 hypothetical protein; Provisional
Probab=85.93 E-value=4.3 Score=31.71 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+++.+||.++..++.-...|...+..-++++..|..+=+.|..++..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3488999999988888888888888888888888877777777776654
No 67
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=85.81 E-value=3.7 Score=38.40 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
...++.+|.++.+.|+.||..|..++.. +..+..||..||..+.
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~----~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQE----LEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 3344455555555555555555544442 3477899999988653
No 68
>PRK04406 hypothetical protein; Provisional
Probab=85.62 E-value=5.8 Score=31.17 Aligned_cols=50 Identities=10% Similarity=0.223 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
++.|+.++..|+.....+-..++.|++-+..-..+-..|+.++..|..||
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888887664
No 69
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.60 E-value=14 Score=34.05 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr 293 (306)
..++.++..|+.+...++.++...++++..+...+.
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 70
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.55 E-value=16 Score=29.50 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=54.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
-++...++..+..=..|+..+..||.++..|..|...-.++.-.+......+..||+.|+.++..
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566667777777888899999999999999999999889889999999999999999877643
No 71
>PRK04325 hypothetical protein; Provisional
Probab=85.50 E-value=6.1 Score=30.85 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
++..++.++..|+....-+...++.|+.-+..-..+-..|+.++..|..||
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777777777776553
No 72
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.45 E-value=13 Score=31.46 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 267 Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
...+-..|..++..+..++..|..+|..|-.+|+.|
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455677888899999999999999999999875
No 73
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.34 E-value=4.3 Score=38.37 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
-+.+|..+++.|+.|...|+-+++.++.++..+....+.|-.+|..+..
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888888888888888888888888877654
No 74
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.14 E-value=3.3 Score=38.85 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
..++..+.+.+.++.++..|.++.+.++.+|+.|..||..|+.+++
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3344444555566666777888888888888899999999988876
No 75
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.06 E-value=0.4 Score=47.90 Aligned_cols=54 Identities=28% Similarity=0.441 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL-KGLTDVNQKYD 286 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~-~~l~~L~qk~~ 286 (306)
+++.|=+.+||.+|-++|.|||..+..|+.+...+..+|..|. .+++.|...+.
T Consensus 284 ~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~ 338 (395)
T KOG1414|consen 284 ERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVK 338 (395)
T ss_pred hhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHh
Confidence 4455558999999999999999999999999999999999887 44444444433
No 76
>PRK00736 hypothetical protein; Provisional
Probab=84.99 E-value=7.1 Score=30.00 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+++.+||.++..++.-...|...+..-++++..|..+=+.|..++..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999998888888888888888888877777777776654
No 77
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.97 E-value=4.6 Score=36.34 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.+.+..+..|..++..|+.||..|.+++..+++.|..|.
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777776666666666654
No 78
>smart00338 BRLZ basic region leucin zipper.
Probab=84.95 E-value=4.3 Score=30.18 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
..+..|+.+...|..++..|..++..+..++..|+.++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777777776654
No 79
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.94 E-value=8.4 Score=35.79 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
-++.+..|+.+++.|+..|..|...+..++++...|..+-..+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555444444444444333
No 80
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.70 E-value=8.4 Score=29.39 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+..++...+..|..+.++|.+...+...|..+=..|+.+++.||.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455566777788888888877777777777777777777777753
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.58 E-value=6.1 Score=33.72 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 021874 291 NNRILKADIETLRA 304 (306)
Q Consensus 291 ENr~Lraql~~Lra 304 (306)
+...|+.++..|+.
T Consensus 69 ~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 69 EVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 82
>PHA03162 hypothetical protein; Provisional
Probab=84.33 E-value=2.3 Score=37.19 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l 278 (306)
+|+.-+++|..++..|+.||..|++++
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566779999999999999999999998
No 83
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.15 E-value=13 Score=38.04 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=41.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
|+++-+.++=+.-.++....+.....|+.++..++.++..+..++......+..+..++..+...+..|+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444455556666777777777777777776666666555556555555555555554
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.08 E-value=11 Score=40.27 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 251 RRKQAHLNELETQAGQLR------------------------AEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le------------------------~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
..+..+|.+||.++..++ .+|..|+.+|.+|+..|..+.++|-.|
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 366677888876666554 456677777777777777777777444
No 85
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.80 E-value=17 Score=35.25 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+..|+.++.++.+.+.+...++.++.+...++..+..+-..|...+.-+.-||
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888889999999999999999999999999999998888887765
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.30 E-value=22 Score=32.46 Aligned_cols=59 Identities=29% Similarity=0.362 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.+....++.+.+-+.-+.+=..-+.++..++.++..|+-++..|..++..+.+....|.
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777766666677777777777777777777777666665555544
No 87
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.24 E-value=7.4 Score=30.24 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.++.++..|+.....+...+..|++-+..-..+-..|+.++..|..||
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888877777777777777777777777777777776653
No 88
>PHA03155 hypothetical protein; Provisional
Probab=83.22 E-value=5.5 Score=34.05 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
-+++|+.++..|+.||..|++++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998743
No 89
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.19 E-value=3.2 Score=34.40 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
.+.++++.+++.++..|+.+|..|..++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444566677777777777777777777776654
No 90
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=83.12 E-value=6.9 Score=29.02 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
.+..|+.+...|..++..|...+..|..++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444433333
No 91
>PRK09039 hypothetical protein; Validated
Probab=83.10 E-value=4.8 Score=39.57 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+...+|..|+.+...|+.++..|+..+..++.+.+..+.+++.|..+
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666666666666666666666666666554
No 92
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.03 E-value=4.2 Score=39.99 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.|...+..|+.+|..|+.++...+.++..|..+|+.||.....+.++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~ 70 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAK 70 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777777777777777777666655554
No 93
>PRK00295 hypothetical protein; Provisional
Probab=82.87 E-value=7.3 Score=29.94 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++.++..|+.....+...++.|+.-+..-..+-..|+.++..|..|
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666544
No 94
>PRK00846 hypothetical protein; Provisional
Probab=82.50 E-value=7.9 Score=30.83 Aligned_cols=49 Identities=29% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
++|.+||.++...+.-...|...+...++.+..+..+=+.|..++..+.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777777777777777777766666666666666666666554
No 95
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.37 E-value=16 Score=33.36 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL-------RAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L-------e~EN~~L~~~l~~L~qk 284 (306)
+.+-.+.+|....+-+..+.+.+.++..|+.++..- +.+...|...+..|+++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777777777766644 44444444444444443
No 96
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.35 E-value=6.1 Score=32.72 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
+.+|+.++..++.+|..|..++..|..+...+..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555666666666666665555555555555543
No 97
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=81.95 E-value=2.6 Score=42.12 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
+...|+.||..|++++++|+.++..| ||..|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 44556666666666666666666666 555554
No 98
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.79 E-value=9.7 Score=35.21 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
.-|..++..|+.+|..|..+...++.++..|..+|..|+.+|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 456677777777777777777777777888877777777776
No 99
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.77 E-value=12 Score=40.55 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
+..+..+|+.|...|+.++....+++..++.|.+.|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666666655543
No 100
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.74 E-value=30 Score=30.36 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
....|++.+-+--.-+++.+..|+.++..+..+...|..+|..++
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555665555555555544444444444433
No 101
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=81.57 E-value=6.8 Score=35.54 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+|++=..+...|...|.-|+.+++........|..++..|..++..|+..
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777777777777777777777777777777777777776554
No 102
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.77 E-value=23 Score=32.85 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.+|..++..|+.|...|...+..+...+.....+-..|+.++..+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555554444
No 103
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=80.72 E-value=7.2 Score=34.39 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~---EN~~L~~~l~~L~qk~~ 286 (306)
+..|.+...++..|+. .|..|..++..|+.++.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444 34444444444444333
No 104
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=80.72 E-value=6.1 Score=33.72 Aligned_cols=19 Identities=16% Similarity=0.386 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 278 LTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lr 296 (306)
+.+|.++...|+.||..||
T Consensus 76 I~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 76 IRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444
No 105
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=80.72 E-value=14 Score=36.44 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
-|+++|-....+.++.++|.....-+........+-..+.+++..+..||-.|++++....-|
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888887777677667777777788888888999999999998877655
No 106
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.66 E-value=7.7 Score=34.81 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
..+.+|+.++..+..-|..|..++..|+-+|..++...+.|+.+-..|
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555544444
No 107
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=80.61 E-value=0.95 Score=37.31 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.||..|...+..|..+|..|..++..|+.++..+...+..|+..|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 6889999999999999999999999999888888888887776654
No 108
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=80.58 E-value=14 Score=28.81 Aligned_cols=33 Identities=12% Similarity=0.337 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
......+..|+..+.....+|..|++++..|..
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~ 56 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQ 56 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 109
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.51 E-value=1.9 Score=32.81 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 271 HSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
...|+.++.+|..+...|+.||..||+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555666777777654
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.47 E-value=34 Score=30.01 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
...+.-++.+++.+..++..+..+..+-..|...+.+.+.++..+..+-..++.....|
T Consensus 119 ~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (191)
T PF04156_consen 119 QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQL 177 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666666666666666666665444444444444444444444333333
No 111
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.41 E-value=8.7 Score=36.74 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
++++..+.+.+..||..|..+++.|+.+|..+...-..|+.+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555544444444444433
No 112
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.31 E-value=35 Score=28.91 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 250 R~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
|.-.+..|..|+..++.+...+..|.++-..|+.....|..+|..+-+.+..|+++
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444443
No 113
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.28 E-value=8.8 Score=37.05 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
....++++..++..++.++..+..++..|++++
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333333
No 114
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.26 E-value=5.5 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L 281 (306)
+.++.+.+|+.+++.|+.+|..|..++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777777777777776666665
No 115
>PRK00846 hypothetical protein; Provisional
Probab=79.93 E-value=14 Score=29.46 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+.|+.++..|+....-.-..++.|++.+.....+...|+.++..|..||
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778777777777777777777777777777777777776654
No 116
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=79.57 E-value=9.7 Score=31.09 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
|+-|-...+.+|..|+.+|..|..++..|+.++.....|-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666666666666666665555555444443
No 117
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.47 E-value=30 Score=32.96 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
+-.+++..-.+.+++.-.-++..+++|+.+|.+++.+.+.++.++..++.
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555556666666666666666666666655555443
No 118
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.15 E-value=10 Score=31.24 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQL--RAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 255 ~~l~eLE~qV~~L--e~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.++..||.+++.| ..+-..|..+++.++.++..+..+=+.+..++.
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555566666655 555555555555555555555444444444333
No 119
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.14 E-value=19 Score=35.66 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..|..-+.+.+.+|..|..++..|++++.++.-+|..||.++..+|.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 56677788999999999999999999999999999999999988764
No 120
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.01 E-value=20 Score=36.32 Aligned_cols=8 Identities=13% Similarity=0.829 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 021874 113 EYRAYLKT 120 (306)
Q Consensus 113 ~y~a~Lk~ 120 (306)
+|+.+|..
T Consensus 114 ~~~~~i~~ 121 (562)
T PHA02562 114 DFQKYFEQ 121 (562)
T ss_pred HHHHHHHH
Confidence 34443333
No 121
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.00 E-value=11 Score=32.68 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
..|..|..++..|+.+...|..++..+...
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 122
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=78.70 E-value=9.2 Score=29.37 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
.....+..++.++..++.+|..|+.++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556666666666666666666655443
No 123
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.68 E-value=19 Score=31.96 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 267 Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+..++..+..+++.|++++...+.|...||.|.+.|..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888999999999999999999999998865
No 124
>PRK00736 hypothetical protein; Provisional
Probab=78.61 E-value=12 Score=28.68 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++.++..|+.....+-..++.|+.-+..-..+-..|+.++..|..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555443
No 125
>PRK09039 hypothetical protein; Validated
Probab=78.41 E-value=17 Score=35.86 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
++..++.+......++..|++++..|..+...|...|..
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444443333
No 126
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.26 E-value=17 Score=37.22 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~EN 292 (306)
+..++.++.....++..+.+.|.++...+..+..+-
T Consensus 75 i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 75 IASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555444
No 127
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=78.25 E-value=16 Score=27.53 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
+++||.++..+......+++++++++..+..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444444444444333
No 128
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=78.11 E-value=13 Score=35.46 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (306)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~ 287 (306)
+-|..++.-=..-+.++..|+.+.+.|+.++..|+.++..|+.-+..
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444334455667888888888888888888888877766554
No 129
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.09 E-value=36 Score=31.10 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
...++-.++.+||.++-.|+.+...+....+.....+..+.++...|++.+..++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777666666666666666666666666666666554
No 130
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.97 E-value=18 Score=32.79 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLR 268 (306)
Q Consensus 254 k~~l~eLE~qV~~Le 268 (306)
+..+.+|+.++..+.
T Consensus 82 ~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 82 EKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445554444443
No 131
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=77.80 E-value=39 Score=31.34 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
|.||. ++..-..-..|.-..-++++..|...+..-+.+-.....+-..++++...|..|.+.++.+|..|++.|
T Consensus 104 eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 104 EIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 455555666666666677777777777777776666666666777777777777777777777776543
No 132
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=77.70 E-value=5.2 Score=36.59 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
|..|.+|..+++ -...++++.+|+.++..|+.+...+.+.+.+|-.++...
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 456777777666 355667888899999998888888888877776554444
No 133
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.66 E-value=14 Score=39.09 Aligned_cols=60 Identities=18% Similarity=0.353 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+.+.|..=...+.+++..+..|+.|...++.++..|..+...|..||..|+.+|..+|.
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 343444444455566667777777777777777777777777788888888777777764
No 134
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=77.49 E-value=9.5 Score=31.03 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 284 KYDESAVNNRILKADIETLR 303 (306)
Q Consensus 284 k~~~l~~ENr~Lraql~~Lr 303 (306)
++.....||-.|+.++..|+
T Consensus 45 evtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444
No 135
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.48 E-value=8.8 Score=42.05 Aligned_cols=56 Identities=21% Similarity=0.416 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.||+..+..|..+...+..++..++.+|.-|+..+.....++..|.++++.||.+|
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46667888888999999999999999999999999999999999999999998764
No 136
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.33 E-value=11 Score=33.52 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 021874 288 SAVNNRILKADIETLR 303 (306)
Q Consensus 288 l~~ENr~Lraql~~Lr 303 (306)
+..++..|+.+++.|+
T Consensus 78 lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 78 LRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 137
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.27 E-value=12 Score=37.48 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 274 LLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
|....+.|.++...+...-.+|+..
T Consensus 251 L~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 251 LVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3333333333333333333333333
No 138
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.10 E-value=11 Score=35.80 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
+..+||.++..+..++..|+.++. .|..+|-.|=.++.-|
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 346677777666666655555544 5668888877666554
No 139
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=76.78 E-value=7.4 Score=28.11 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 276 KGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 276 ~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+..|..++..|..+|..|+.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556667777788888888888887764
No 140
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=75.86 E-value=23 Score=33.30 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.++.|+.+++....+-..+..+...|+.+...+..|=.+|..+...||.+
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555555555555555555555555544
No 141
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.75 E-value=22 Score=28.25 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.+++|..+-..|..|-+.+....+.|.++...+..|...-..++..|
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444
No 142
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=75.71 E-value=11 Score=31.04 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.|.+++.+.-.+...|..|..++..|.++...-.. +-.++.++..+++
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~ 65 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEK 65 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHH
Confidence 34455555555555555555555555444433333 3344444444443
No 143
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.38 E-value=11 Score=39.06 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=8.9
Q ss_pred HHHHHHhhhhhhHHHH
Q 021874 114 YRAYLKTKLDLACAAV 129 (306)
Q Consensus 114 y~a~Lk~kL~~~~AAv 129 (306)
.|...|+|=-+-+++|
T Consensus 4 ~n~~~~rkQ~~~~~~~ 19 (475)
T PRK13729 4 INTIVKRKQYLWLGIV 19 (475)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3555666655555554
No 144
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.36 E-value=52 Score=28.88 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 267 Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
|+.+...|...+..|...+..+..++..|.+.++.++.
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~ 94 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444433
No 145
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.19 E-value=17 Score=35.77 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.|...|..++.+|+++++.+..||..|.+.+.
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444555555555555555555555555444
No 146
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=75.08 E-value=14 Score=31.14 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
||-.|+.-...|.+++..++++...|..||.+|-+-|+.|
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3444444444555555666666666667777777766655
No 147
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.05 E-value=36 Score=30.85 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
..+|+.++..|+.++..|..++..+..++..+...+..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777776666666655544443
No 148
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.01 E-value=18 Score=27.05 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 276 KGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 276 ~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.++..|+.++..+..+|..|+.++..|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444444
No 149
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=74.81 E-value=23 Score=29.26 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSL--LKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 260 LE~qV~~Le~EN~~L--~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
++.++..++.+...| ...+..|+-....+.-+=+.|.+++..+.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555555555554 44455555444444444444544444443
No 150
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.61 E-value=23 Score=31.60 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.+|..+|..|+.+|..|...+..+..+...+......|+.....|.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3455666666777766666555555555555555555555544443
No 151
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=74.50 E-value=20 Score=32.98 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
...++..|+.+-..|..++-++...|..|+.|...||.+...+..
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555666666566565555555555555555555555555443
No 152
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=74.27 E-value=5.6 Score=34.12 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
|..-+++|..++..|+.||..|++++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999999998764
No 153
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=74.21 E-value=7.7 Score=41.45 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+|-.+|.+|..|+..|+.++...++-...|+..++.|..+|.+++++
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~e 372 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAE 372 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999988888888888888888888877765
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.51 E-value=55 Score=31.93 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+.+..|+.+...|..+-..+......+..++..+..+...|+.++..++
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444433
No 155
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.17 E-value=51 Score=30.28 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
..+..|..++..++.++..++.++.
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 156
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=73.14 E-value=4.2 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 266 ~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
+|-..|+.|..++.++..+...|..||-.||.++
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3334444455555555555555555555555543
No 157
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=72.94 E-value=41 Score=32.89 Aligned_cols=20 Identities=20% Similarity=-0.009 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 285 YDESAVNNRILKADIETLRA 304 (306)
Q Consensus 285 ~~~l~~ENr~Lraql~~Lra 304 (306)
...|+.+|..+++..+.||.
T Consensus 93 ~s~Leddlsqt~aikeql~k 112 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRK 112 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666554
No 158
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=72.46 E-value=13 Score=29.56 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 268 e~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
..+...+..++..++++...+..||..|+.++.+|.
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555566666666666666776666666553
No 159
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.34 E-value=18 Score=35.04 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=6.3
Q ss_pred HHHHHHhhh
Q 021874 38 ELEKFLQEV 46 (306)
Q Consensus 38 ~FekfLeE~ 46 (306)
.++.||+..
T Consensus 15 sL~~FL~~~ 23 (325)
T PF08317_consen 15 SLQDFLNMT 23 (325)
T ss_pred CHHHHHHHh
Confidence 367777775
No 160
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=72.15 E-value=24 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
.-|.+|-.+|...+.||..|..++.-|++-+..|+....++
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~ 70 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVF 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44566667777777777777777777777776666655444
No 161
>PHA02562 46 endonuclease subunit; Provisional
Probab=72.04 E-value=46 Score=33.73 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..+++++..+..+...|+.++..|+.+
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~ 242 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDE 242 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555543
No 162
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=71.52 E-value=16 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|..++++|+..|..|...++..+++...+......-.+..-.||-+
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrla 48 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLA 48 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 46677788888888888888888888877777777766666666543
No 163
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=71.45 E-value=6.9 Score=31.88 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
|+.+++.|..++..++.+|..|..++..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346667777777777777777777666544
No 164
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=71.40 E-value=26 Score=32.28 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021874 283 QKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 283 qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+...+...+..|+++|..|+++
T Consensus 189 ~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 189 SKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666553
No 165
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=71.30 E-value=6.3 Score=40.61 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.|..+|..|..+|..|+.+++.+.-+|..+..+|+-|+.--..+++|
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQar 93 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQAR 93 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhc
Confidence 567788888889998899999999999999999998887655555443
No 166
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=71.21 E-value=20 Score=36.41 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
++|.--|.|-.+.-...|.+++.+.-|...|+.+++.+.....-+..||..||.-+..|.+
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5566667777777777778888888888899999999999999999999999988877765
No 167
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.21 E-value=50 Score=31.06 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 264 V~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+..++.|+..++.++..|+.++..+...|..|..+|..|..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 44555666666666666666666666666666666665543
No 168
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=71.15 E-value=34 Score=31.32 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+++..|+.++..++.....|..++..|+.++..+.+.-..|.+++...++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777777777666655544
No 169
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=70.91 E-value=53 Score=32.67 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-------H-------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHL-------N-------------------------ELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l-------~-------------------------eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
.++.|+++++|...-..=+||..++ + -|..++.+|+.+...+..+|..
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888887766666664333 1 2334556666666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 281 VNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 281 L~qk~~~l~~ENr~Lraql~ 300 (306)
++.++..+...|..|+.-|.
T Consensus 201 ~~k~L~faqekn~LlqslLd 220 (323)
T PF08537_consen 201 TKKDLKFAQEKNALLQSLLD 220 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777766554
No 170
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=70.87 E-value=52 Score=34.90 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=5.8
Q ss_pred hHHHHHHHHh
Q 021874 111 SDEYRAYLKT 120 (306)
Q Consensus 111 p~~y~a~Lk~ 120 (306)
..+|+.|+=.
T Consensus 50 ~rdY~Tf~Wa 59 (546)
T PF07888_consen 50 TRDYYTFVWA 59 (546)
T ss_pred hhheeeEEee
Confidence 3477777533
No 171
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=70.71 E-value=13 Score=38.52 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHL----------NELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l----------~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
..+||.|-|++--||-|+.+.-=..+- .+|..+|..|+.+|..|..+|..|+
T Consensus 252 rvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 252 RVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 456777778888888888776654433 5677888888888888888877544
No 172
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=70.58 E-value=51 Score=28.96 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
|-..|+.++..|..++..|.+.+..+..|-..|+..++.|.
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777777777666666666666555555555553
No 173
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=70.52 E-value=37 Score=38.61 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 252 RKQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN-~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++|..+..|+.+|..++.+- ..|..++.++..++..|..++..|..++..|+.+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666554 5555555555555555555555555555555543
No 174
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.39 E-value=7.8 Score=29.56 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLL 275 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~ 275 (306)
++.+|+.++.+|+.||.-|+
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444
No 175
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.95 E-value=45 Score=25.19 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
+.++.|..+|..|..+...|...+..|+.....+..|-.+-.++|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777666666655555544444443
No 176
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.73 E-value=48 Score=36.26 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+.||.+...|+.|...++.+=..|-+.|..|+.||=.|+.+|..|+.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777778888888888888888888874
No 177
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.64 E-value=46 Score=31.69 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
...+..|+.++..++.+-..|..++..|..++..+..+-..|+.++..++.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666665555555555543
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.48 E-value=23 Score=33.56 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
-=+.+|++|+.+|..|+.+++.+..++..++++-..+-.+=..+.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999998888776654443
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.39 E-value=66 Score=31.36 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+.+.++...+-....+....+|+.+-..+-.+.+.+..++..+.++...+.++-..+..++..|+
T Consensus 69 LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 69 LEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444554444445555555555555555555555555555555555444
No 180
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=69.37 E-value=22 Score=29.50 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 284 KYDESAVNNRILKADIETLR 303 (306)
Q Consensus 284 k~~~l~~ENr~Lraql~~Lr 303 (306)
++..+..+|+.|..++..++
T Consensus 23 kl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 23 KLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555544
No 181
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.36 E-value=22 Score=28.62 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.+..|..++..|+.+...+..+|..|+.++.
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455777788888888888888888887764
No 182
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.05 E-value=49 Score=37.68 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=49.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 239 MLSNRESARRSRRRKQAHLNELETQA-GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV-~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
...+=...+....+....+.+++.+. ..+..+..++..++..|+++...++..+..|+.+++.++.+
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777888888887 77777777777777788888888888888888777777654
No 183
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.87 E-value=90 Score=30.29 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
...|+..+..|+.+...|...++.+...+..+......|+.++..|++.
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888999999999888888888888888888888888888764
No 184
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.86 E-value=95 Score=30.57 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=43.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 233 DKRARRMLSNRESARRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk-~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+..|.-+.+..++-++.+... +.+.+|-.++..|..+-..+..++..+..+-..+-..-..|...+..|+.+
T Consensus 25 ~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 25 LKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666655433 555666666666666666666666666666666655555566666665543
No 185
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.78 E-value=1e+02 Score=29.04 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+...+..|+.+...|+.++......|..|..-.-.|-.+|.+.|.
T Consensus 258 ~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 258 EEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44445566666666666666666666666666666666666666553
No 186
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.76 E-value=24 Score=34.11 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr 293 (306)
.+|+..+..++.+...|..++..+..+...+..++.
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~ 76 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID 76 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 187
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.73 E-value=21 Score=26.89 Aligned_cols=34 Identities=9% Similarity=0.303 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.+..|+..+..++.||+.|+..++.+.+-++.+.
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888888888888887776554
No 188
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=68.63 E-value=51 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.+|..++..-+.|...|..-++.|+.++.....-|..|..+...++
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555666655555544
No 189
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=68.18 E-value=6.2 Score=28.26 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=11.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l 278 (306)
.++...|++=|+..-... ..+.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 455666777766655544 457778888888888877776654
No 190
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.02 E-value=25 Score=26.85 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 267 Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+..|....+..+-.+..+++.....|+.|..+|..|+.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555556666555555554
No 191
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.93 E-value=56 Score=33.95 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+.|+.++.+|+.||..|+..+..|.-.+..+..+-..+-.+|+.||-+
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlq 347 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQ 347 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3556678889999999999999999999999999998888888888765
No 192
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.78 E-value=49 Score=35.52 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLN----ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~----eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.|.|+.|--+-|...-..+-.++...+. .+|.+-..|+.|...++-+-+.|-+.|..|+.||=.|+.+|..||.
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 4677777777666555544444443332 3455556677777777777777777777777788777777777764
No 193
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.72 E-value=38 Score=36.46 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
.+..+|+..+..|+.++..|..++..+..+..
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666555555554443
No 194
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.64 E-value=30 Score=30.39 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
+.++..+......+.+++.++.+.......+=..++.++..+
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433444444444444444444
No 195
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=67.35 E-value=12 Score=27.79 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
.....++..|+.||..|+.+|..++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667889999999999999988655
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.32 E-value=58 Score=31.89 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=32.2
Q ss_pred cCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 227 ~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
.-|+.+.++.|-.++-.. .-=..|+..+.+++.++..+......+..+...++.++..++.
T Consensus 200 ~~d~~eL~~lk~~l~~~~---~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 200 DCDPTELDRAKEKLKKLL---QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred hCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777665444321 1122333445666666666666666655555555555555554
No 197
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.27 E-value=28 Score=34.07 Aligned_cols=76 Identities=24% Similarity=0.266 Sum_probs=48.1
Q ss_pred cCCchHHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 227 GLDSVDDKRARRMLSNRE-----SARRSRRRK-QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 227 ~~d~~e~KR~RR~lsNRE-----SArRSR~RK-k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.+-..++|=.|=|+.|-. ++-...--- |..|++||..+..|..++......+..+++.+..|..+-..|+.+|.
T Consensus 85 ~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777888732 222222111 34566777777777777777777777777777777777777777775
Q ss_pred HH
Q 021874 301 TL 302 (306)
Q Consensus 301 ~L 302 (306)
..
T Consensus 165 ~r 166 (302)
T PF09738_consen 165 QR 166 (302)
T ss_pred HH
Confidence 54
No 198
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.23 E-value=58 Score=32.90 Aligned_cols=68 Identities=18% Similarity=0.322 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD--------------VNQKYDESAVNNRILKAD 298 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~--------------L~qk~~~l~~ENr~Lraq 298 (306)
..|.|++.-|-|--|.-| +-+++-..+.++|+..|+.|..+|.. |..-...+..||+.|+.+
T Consensus 74 q~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666767666655 34444455566677777777766554 344556677889999988
Q ss_pred HHHHHH
Q 021874 299 IETLRA 304 (306)
Q Consensus 299 l~~Lra 304 (306)
+..|.+
T Consensus 150 L~~l~~ 155 (401)
T PF06785_consen 150 LDALQQ 155 (401)
T ss_pred HHHHHH
Confidence 887754
No 199
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.86 E-value=13 Score=38.61 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021874 283 QKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 283 qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++...|..+-..|+..+..|..+
T Consensus 116 ~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 116 KEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 200
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=66.74 E-value=68 Score=32.93 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH---HHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL----------------RAEHSSLL---KGLTDVNQKYDESAVNN 292 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L----------------e~EN~~L~---~~l~~L~qk~~~l~~EN 292 (306)
+.|..||+...-+-=||-|.+=...|.+|-.-|-.. ..-+..|+ .+..++.++...|+..|
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n 306 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTN 306 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 344555566666777777777777777776433221 12222222 33334555566666777
Q ss_pred HHHHHHHHHHHH
Q 021874 293 RILKADIETLRA 304 (306)
Q Consensus 293 r~Lraql~~Lra 304 (306)
++|..+++.|..
T Consensus 307 ~~L~~rieeLk~ 318 (411)
T KOG1318|consen 307 QELALRIEELKS 318 (411)
T ss_pred HHHHHHHHHHHH
Confidence 777777777754
No 201
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=66.72 E-value=61 Score=35.79 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
++.+.|..|-..+++++..++..-..+..++..|++++..|++
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456778888888888999888889999999999999999874
No 202
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=66.69 E-value=11 Score=30.19 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
|.+.+.++..|..-...|+.+|.-...-...|..++..++.
T Consensus 14 L~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 14 LNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555444444455555555554
No 203
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=66.47 E-value=39 Score=29.10 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
...+.+|+.++..|..|--.=.++++.+=.+.+.+..+|+.|+..|..|..+
T Consensus 13 e~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~R 64 (120)
T PF10482_consen 13 EKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENR 64 (120)
T ss_pred HHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666654445556666666666666777776666666544
No 204
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=66.35 E-value=19 Score=32.85 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.=.|.|+..|+.+|..|..+++.|. ....+|..+-.++..|.
T Consensus 43 SL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 43 SLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4445566666666666666665443 44556666666555554
No 205
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=66.19 E-value=88 Score=28.33 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
-...+.+|+.+...|+.+...|..+++.+.++..
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655555555544443
No 206
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=66.19 E-value=23 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.....+..++..++++...+..+|..|+.++..|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445556666666666667777777777766654
No 207
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=65.67 E-value=37 Score=33.22 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
|+=.+|.+++....|...|..++..|+.+
T Consensus 65 ~~y~~e~e~~sy~~e~~~l~~qvs~l~~~ 93 (389)
T PF06216_consen 65 YIYNKEFERQSYSNEWISLNDQVSHLQHQ 93 (389)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333
No 208
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=65.50 E-value=33 Score=31.79 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLL 275 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~ 275 (306)
..+++|..-+..|+.+|..|.
T Consensus 67 eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 67 EELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 209
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.38 E-value=63 Score=36.06 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=41.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
....+-..=+--+++-...++.|.+++..|+.||.+|..++++....+..+..++..||.++.
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444555556666777777777777777777777777777777777777777766
No 210
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=65.35 E-value=91 Score=26.94 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN-~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
..+..+..|+.....|..|. ..+..++.+|---+..+...|..+|.++..|=
T Consensus 59 ~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 59 ELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 33444455555555555444 45566666676677777777888887777663
No 211
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=65.30 E-value=68 Score=29.60 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..|-.-...+..||..|+.+|..|.+++..|...+..|..+-..|+.
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778999999999999999999999999999888887764
No 212
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=65.26 E-value=24 Score=32.85 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.||..|..++..+..++..|..||..|+.-.+.+
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777776544433
No 213
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.25 E-value=26 Score=37.68 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~ 279 (306)
.|+.+|+.|+.||+.|...+.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~e 446 (652)
T COG2433 426 KLEETVERLEEENSELKRELE 446 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333
No 214
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=65.25 E-value=27 Score=29.09 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
|...+..|+.++..+..++..+++++.....+.+.||.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 215
>COG5570 Uncharacterized small protein [Function unknown]
Probab=64.96 E-value=14 Score=27.86 Aligned_cols=51 Identities=29% Similarity=0.382 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.||.+|+.+-..|+.|.+.-...-.-=-..+..|....-+||.+|+.|+++
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 477888888888887776644321111122334444455677777777765
No 216
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.93 E-value=1e+02 Score=29.76 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHL--------NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l--------~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+..+.++++...-+.+.-..++ +-+ .-+..-+.....+|..+.+++..-++....+..+...|+++|+.|+
T Consensus 142 el~e~~~~el~~l~~~~q~k~~-~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 142 ELNEMRQMELASLSRKIQEKKE-EILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566655544443322221 222 2233456667789999999999999999999999999999999998
Q ss_pred Hh
Q 021874 304 AK 305 (306)
Q Consensus 304 ak 305 (306)
..
T Consensus 221 ~~ 222 (258)
T PF15397_consen 221 AQ 222 (258)
T ss_pred Hh
Confidence 64
No 217
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=64.82 E-value=54 Score=26.60 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.|..|..-+..|+..|..|.. +++.|..-||..|.+++....
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~-------~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHA-------QLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 344444445555544444444 444566777777777665443
No 218
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=64.62 E-value=22 Score=34.27 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
.++.+|..+.+.|+.++..+. .+..+...++.||..||..+
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 66 KSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 444455555555554443332 23345556777777777654
No 219
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=64.44 E-value=32 Score=35.85 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
+|+.+.+.+...+..|+.....+..++..++.++..+...-|.|+.+|+.
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44455678888888888888889999999999999999999999999886
No 220
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=64.09 E-value=28 Score=28.69 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 272 SSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
..+..++..+..++.......++++
T Consensus 54 ~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 54 EELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544
No 221
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.06 E-value=94 Score=32.20 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
=++++..+|..+..|+.||..|..+.-.
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888766544
No 222
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.89 E-value=46 Score=31.34 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.+|++++.+.+.|..|-..+..+|.++.+.+..++
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE 66 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLE 66 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433333
No 223
>PF14282 FlxA: FlxA-like protein
Probab=63.87 E-value=40 Score=27.79 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
..|+..+..|..++..|+.+...|..+...
T Consensus 47 e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 47 EQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665555554443
No 224
>PRK14127 cell division protein GpsB; Provisional
Probab=63.54 E-value=47 Score=28.07 Aligned_cols=28 Identities=11% Similarity=0.315 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
.|..++..|+.+|..|..++..++.+..
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444444444444333
No 225
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=63.45 E-value=53 Score=32.29 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQA---HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~---~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.-.||+.|++.-----+|-|..+.. .+++|+.+-++|+.+-..|.+++..|++-+.+..
T Consensus 228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888443344444555544 5567788999999999999999998887766543
No 226
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=62.76 E-value=17 Score=29.49 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+..++..|..++..+..+|..|..+|..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677888899999999999999999999885
No 227
>PRK10722 hypothetical protein; Provisional
Probab=62.43 E-value=57 Score=31.36 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRES------ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 231 ~e~KR~RR~lsNRES------ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
.-.+-+-++.+.+.- .-|.|-+|.+ ++-+.+++.|+.++..|..++..+++|+..|..--|.|-
T Consensus 141 ~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQ--q~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLS 210 (247)
T PRK10722 141 AQVRPLYQLWRDGQALQLALAEERQRYQKLQ--QSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLS 210 (247)
T ss_pred hhhhHHHHHHHHhhHHHHhHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666677777654 6666665554 455789999999999999999999999999988777774
No 228
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.18 E-value=67 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021874 288 SAVNNRILKADIETLRAK 305 (306)
Q Consensus 288 l~~ENr~Lraql~~Lrak 305 (306)
+...|..|..++++|..|
T Consensus 435 ~nak~~ql~~eletLn~k 452 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFK 452 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555555443
No 229
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=62.07 E-value=29 Score=29.83 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
.+|..+|..|+.|+..+..-..+|..++.-|+..++..++.+..
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35556666666666666666666666666666666666665543
No 230
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=61.86 E-value=57 Score=31.67 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.|-.=+-|+|||..=..++++++.| ..++..|+...- -..+|..|++++..++.+|-+..++|..+.++
T Consensus 125 ~yR~~LK~IR~~E~sl~p~R~~r~~l---~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 125 QYRIHLKSIRNREESLQPSRDRRRKL---QDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHH---HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34555567888887644444443333 344444443322 24577888999999999999998888877653
No 231
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=61.75 E-value=41 Score=32.91 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
=|.|+-+.+ -+-....|..||..|+..|..+++++...+.++..|.
T Consensus 67 y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 67 YNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355555443 2455677778888888888888888877776666654
No 232
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=61.61 E-value=84 Score=30.85 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+-|..++..|+.....|.+++.+....+..+......|+.++..||..
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444555555555566666666543
No 233
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.55 E-value=86 Score=32.19 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 267 Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+..-...+..++..+..+...+..+-+.|+.++..|+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445555555555555555443
No 234
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=61.50 E-value=34 Score=34.38 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
|+.++..|+.++..|..++..+++++..+..|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333333
No 235
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=61.35 E-value=50 Score=32.74 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLL--------------KGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~Le~EN~~L~--------------~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..|.-|..=|--++.|..+...|+..+..|. .....|.+-+.....+|..|+.++..||.|
T Consensus 20 ~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqk 94 (319)
T PF09789_consen 20 KCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQK 94 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555554444 122334445555556666666666666655
No 236
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=61.16 E-value=33 Score=29.77 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
-|.....-+..|+.||.-|+..|-.+++-|..=...=..|+.++..+|
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~q 126 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIMQ 126 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345566778999999999999999999999888888888888887653
No 237
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.15 E-value=35 Score=33.30 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.++...+.+...|..++..|+.+|.....+...|..++.....
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444555555555544444433
No 238
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=61.13 E-value=87 Score=35.24 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=39.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
-..+.-++++.+.-.......+|..++..+..+-..+..+.+.....+..+..|-..|.-+++.|..+
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666655555555555555555555555555555555443
No 239
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=61.11 E-value=28 Score=30.25 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
.+...|..+..|+.|...=-.++..|++++..+...|+.|..+
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555556666666666666666677777777778777654
No 240
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.92 E-value=95 Score=26.84 Aligned_cols=52 Identities=10% Similarity=0.228 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
++|+.|..++++...-......++..++.....+..+=..+..-+..|..|+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777777777777777777777777777776653
No 241
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=60.86 E-value=64 Score=26.29 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+|-....||-.|+.++..++.=+ ..-+-..|-++|..|+.++
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhC
Confidence 44557788999999988777655 5668888999999998764
No 242
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.80 E-value=42 Score=32.18 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 021874 290 VNNRILKADIETLR 303 (306)
Q Consensus 290 ~ENr~Lraql~~Lr 303 (306)
+.+..|..++++|+
T Consensus 89 t~~~~ie~~l~~l~ 102 (247)
T COG3879 89 TDDAALEDRLEKLR 102 (247)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444555554
No 243
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.71 E-value=40 Score=32.90 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 280 DVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 280 ~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
++..+...|.++|..|+.+++.+.
T Consensus 56 q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 56 QLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443333
No 244
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.70 E-value=37 Score=36.20 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
+.|+..++.+-..+......|..++.....++..+..+|..|+.+|+
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555443
No 245
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=60.57 E-value=75 Score=36.13 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
++.++..++..|+.....+..++..+.+.+..+...-..++.++..++.
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555555444443
No 246
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=60.47 E-value=40 Score=30.61 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~ 287 (306)
|..++++....|..|...+..|+..+..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566665555555555554
No 247
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=60.46 E-value=44 Score=33.01 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
|-++.+..|-.+|..|+.....+..+...|.+++.....-...|.+++..|+.|
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555555555555544
No 248
>PRK11546 zraP zinc resistance protein; Provisional
Probab=60.07 E-value=36 Score=30.05 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 284 KYDESAVNNRILKADIETLR 303 (306)
Q Consensus 284 k~~~l~~ENr~Lraql~~Lr 303 (306)
++..|..|...|+.++.++|
T Consensus 90 kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 90 KINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 249
>PRK14160 heat shock protein GrpE; Provisional
Probab=59.61 E-value=41 Score=31.44 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
..+..|+.++..|+.++..|..++..++.++..+.++..-+|.+..
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777766666655544
No 250
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=59.52 E-value=40 Score=38.32 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
++|..++..+......+..++..|.+.+..++.||+-|..+|..|.
T Consensus 512 ~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 512 NELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444445555555555555555543
No 251
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.40 E-value=44 Score=32.58 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..|+.+..++..|+.||..++.+....+..+..+..|+..+..++..++.|
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k 294 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKK 294 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777778888887777777777777777777777777666654
No 252
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=59.35 E-value=97 Score=25.30 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=30.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
..|-++.-+...+.+..|...+..|..++..|+.++..|...+..+.
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666667777777777777777777766666544
No 253
>PRK10698 phage shock protein PspA; Provisional
Probab=59.24 E-value=98 Score=28.69 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+..|+.++.........|...+..|+.++..+...-..|.++...-++
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666677777777777777777777777666655443
No 254
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=58.57 E-value=72 Score=32.64 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+..+-..-+..|+.|...|.++++--.++...++.+...|..+++.-+
T Consensus 133 daaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk 180 (561)
T KOG1103|consen 133 DAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEK 180 (561)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333446678888888888888777777778887777777776543
No 255
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.56 E-value=1e+02 Score=32.22 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
|..++..++.++..+..+|..|+.....++.|
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33334444444444555555555544444433
No 256
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=58.10 E-value=1.2e+02 Score=33.19 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=6.0
Q ss_pred cchhHHHHHHhhh
Q 021874 34 QSEWELEKFLQEV 46 (306)
Q Consensus 34 ~SEW~FekfLeE~ 46 (306)
+-|.+|| +|+++
T Consensus 189 ~n~~~~~-~l~~~ 200 (697)
T PF09726_consen 189 ENEFYMQ-LLQQA 200 (697)
T ss_pred HHHHHHH-HHHHh
Confidence 3455553 45554
No 257
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=58.04 E-value=91 Score=27.88 Aligned_cols=56 Identities=11% Similarity=0.254 Sum_probs=43.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
.+..+++|+.|.-|+-.=++|-....+|..++...+.....+..+|..|..++...
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~~ 138 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMASK 138 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788889899888888988888998888887777777777777766555443
No 258
>PRK10963 hypothetical protein; Provisional
Probab=58.03 E-value=34 Score=31.51 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021874 270 EHSSLLKGLTDVNQK 284 (306)
Q Consensus 270 EN~~L~~~l~~L~qk 284 (306)
+|..+..++..+..+
T Consensus 69 ~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 69 ANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 259
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.00 E-value=53 Score=37.34 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=46.0
Q ss_pred HHHHhHHHHHHHHHH----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 238 RMLSNRESARRSRRR----KQA------HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 238 R~lsNRESArRSR~R----Kk~------~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
-+|+++..|.|.+.- +.. ..+....++++|+.+...+..++..++..|....-.|+.|+.+++.|..+
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~ 491 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSK 491 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456666667665421 111 24456667777888888888888888888887777777777777776654
No 260
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=57.88 E-value=73 Score=24.91 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
..+|......-..+|..|..++..|.+++..|.
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444443
No 261
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.84 E-value=38 Score=32.20 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=30.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
|-|=+.+|.|-=..-|+ -++.+..|..+|+.|+..|-+|..++.-|+
T Consensus 88 RDRFR~Rn~ELE~elr~-~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRK-QQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33335555555444432 235678888888888888888888776543
No 262
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=57.76 E-value=1.2e+02 Score=28.29 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~EN 292 (306)
.+-.....++..|+.|...+..+|..|+.++..|..++
T Consensus 147 ~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 147 ARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555666666666666666666666666665544
No 263
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=57.73 E-value=71 Score=31.63 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL 267 (306)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L 267 (306)
+...+|.-+.++||+-.++-+.++.++...+..++.+|
T Consensus 272 ~~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i 309 (387)
T PF07767_consen 272 PKKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI 309 (387)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666788888887777777777666555554443
No 264
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.65 E-value=51 Score=35.15 Aligned_cols=45 Identities=29% Similarity=0.472 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.|++|..++..++.+...|..++..+.++......++..|.+++.
T Consensus 336 ~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 336 QLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555555444
No 265
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=57.36 E-value=55 Score=30.02 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
.+.-|+|-.|.+ ..-..++..|+.++..|..+|...+.|+..|.---|.|-.
T Consensus 114 L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSS 165 (179)
T PF13942_consen 114 LSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSS 165 (179)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 456667777666 6667899999999999999999999999999887777743
No 266
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=57.12 E-value=47 Score=35.17 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.|..+-.+...+..||..|..+|.+++++...+..||..|.+-+...
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777888888888888888888888888877666543
No 267
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.04 E-value=80 Score=35.30 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=12.1
Q ss_pred CCCcchhHHHHHHhh
Q 021874 31 NRSQSEWELEKFLQE 45 (306)
Q Consensus 31 nrs~SEW~FekfLeE 45 (306)
-||+==+||+-||=+
T Consensus 386 lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 386 LRCAVLYCFRSYLYD 400 (970)
T ss_pred HHHHHHHHHHHHHhc
Confidence 378888999988865
No 268
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.95 E-value=76 Score=25.20 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
++|.+||.++..-+.-...|...+.+.+.-...+...-+.|-.++..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666555555555555554444444444444444444433
No 269
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.75 E-value=1e+02 Score=36.38 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=11.6
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRK 253 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RK 253 (306)
++.+.+.+.++.|++.+.-+
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655543
No 270
>PRK02224 chromosome segregation protein; Provisional
Probab=56.47 E-value=1.3e+02 Score=32.46 Aligned_cols=46 Identities=28% Similarity=0.422 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.|+..+..|+.+...|..++..+..++..+..+...|+.++..++.
T Consensus 353 ~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~ 398 (880)
T PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444455555554443
No 271
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.36 E-value=1e+02 Score=34.47 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 281 VNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 281 L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
++.+...|..|-..|.-+++.|-.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~ 458 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSG 458 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444433
No 272
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.23 E-value=59 Score=26.09 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=29.0
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 228 LDSVDDKRARRMLSNRESARRSRRRKQ----AHLNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 228 ~d~~e~KR~RR~lsNRESArRSR~RKk----~~l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
+...|....-+.+-. +-.+-|.||. ..+..|..++..|..+|..|..++.
T Consensus 46 Ls~~eL~~LE~~Le~--aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 46 LSLKELQQLEQQLES--ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred cchHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444433 3444555554 4566777777777777777776653
No 273
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=56.16 E-value=66 Score=34.68 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
..|+.++.++..-+.+......++.+++.+-.-|.+
T Consensus 100 ~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~A 135 (632)
T PF14817_consen 100 KEIESREREVSRQEASREQMLDKISDSRHKQLLLEA 135 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444444444444444444333333
No 274
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.87 E-value=90 Score=25.02 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhC
Q 021874 236 ARRMLSNRESARRSRRRKQ------AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKM 306 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk------~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~---ENr~Lraql~~Lrakv 306 (306)
.+.+..|.+..+.+-.++. ..+-+|..+...|..+-..|+.+-..+..++..+.. +-..|++++..|..++
T Consensus 4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i 83 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEI 83 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHH
No 275
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.73 E-value=95 Score=25.42 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHS-SLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~-~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
|=..=|.+|..|..-.. ....++..|+.+...+..||..|+.++..-|.
T Consensus 28 YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 28 YSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444667777763332 25566777777777777777777777766553
No 276
>PHA03011 hypothetical protein; Provisional
Probab=55.70 E-value=79 Score=26.88 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.+++|-.|...|-.|.+-+..+...+.+-.+.-..+=--|++++..|.+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655554444444444445555555543
No 277
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=55.31 E-value=56 Score=34.89 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
.+|..|+.+.++|+.||..|+.+|..|.
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3444444555555555555555554444
No 278
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=55.18 E-value=58 Score=33.98 Aligned_cols=51 Identities=29% Similarity=0.398 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRA-----------EHSSLLKGLTDV------------------------NQKYDESAVNNRILKADI 299 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~-----------EN~~L~~~l~~L------------------------~qk~~~l~~ENr~Lraql 299 (306)
..+..|-.++..|+. ||..|+.+|.+. ++++..+..||..|+++|
T Consensus 385 rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqi 464 (488)
T PF06548_consen 385 RFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQI 464 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556555555554 888888776532 366777888999999999
Q ss_pred HHHHHh
Q 021874 300 ETLRAK 305 (306)
Q Consensus 300 ~~Lrak 305 (306)
+.|+.|
T Consensus 465 ekLK~k 470 (488)
T PF06548_consen 465 EKLKRK 470 (488)
T ss_pred HHHHHH
Confidence 999876
No 279
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.17 E-value=74 Score=34.00 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
..++.=+.+++..++.+...+..|+..+...+.|+..|+++...|+.+|
T Consensus 276 nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 276 NKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777788888889999999999999999999999999998764
No 280
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=55.05 E-value=1.9e+02 Score=29.00 Aligned_cols=57 Identities=26% Similarity=0.400 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 229 DSVDDKRARRMLSNRESARRSRRR------KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (306)
Q Consensus 229 d~~e~KR~RR~lsNRESArRSR~R------Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~ 287 (306)
-++|.||+.-+|+ +-||-+-.| =+.+-+.+|.++.+|+.+|.-+.++-+.|+++|.+
T Consensus 3 ~~~dk~ri~~li~--~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 3 CPEDKRRIANLIK--ELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred ChhHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3566677776665 466655443 34556788899999999999998888888877764
No 281
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=54.90 E-value=12 Score=36.27 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.++.++|.+|..|+.-|..|..+|+.=..-|..+...-..+|++|.++..|+
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl 268 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKL 268 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567899999999999999999886655556555555556677776666553
No 282
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.54 E-value=1.4e+02 Score=26.97 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
.|+.++..+......|...+..|..++..+..+-..|+++
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433
No 283
>PHA02675 ORF104 fusion protein; Provisional
Probab=54.40 E-value=96 Score=25.47 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021874 288 SAVNNRILKADIETLRAK 305 (306)
Q Consensus 288 l~~ENr~Lraql~~Lrak 305 (306)
|+..-..||..+-.|..|
T Consensus 63 LE~H~ETLRk~Ml~L~KK 80 (90)
T PHA02675 63 LERHLETLREALLKLNTK 80 (90)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333334444444444443
No 284
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.34 E-value=1e+02 Score=24.46 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
|++|-..|...+.....+..++..|.+++..+.
T Consensus 24 ieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 24 IEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444455444455555555555555544443
No 285
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=54.21 E-value=91 Score=25.94 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 265 ~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.|...+..|..++..+.+++..+...+..+..++..|+..
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777777777777777777653
No 286
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.93 E-value=87 Score=33.97 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 021874 290 VNNRILKADIETLRA 304 (306)
Q Consensus 290 ~ENr~Lraql~~Lra 304 (306)
.+|+.|..+|..|+.
T Consensus 300 ~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 300 EERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHhhc
Confidence 666666666666654
No 287
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.83 E-value=1.3e+02 Score=34.45 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 264 V~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++.|..|...|..++..+.+++..+..+-+.|+.++..|+++
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555554
No 288
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=53.42 E-value=1.8e+02 Score=26.58 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 275 LKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 275 ~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+.++..+.+++..+.-++.+|.+++..|.
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 289
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=53.30 E-value=1.2e+02 Score=27.42 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 230 SVDDKRARRMLSNRESARRSRRR-----KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~R-----Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
..+..|.++-++.+.-++++|.- =....++||.-+.-.+.|...+++.+..++.++.
T Consensus 40 EeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLk 101 (159)
T PF04949_consen 40 EEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhh
Confidence 45666777788888889888842 2233355665555555566666555554444433
No 290
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=53.29 E-value=1.3e+02 Score=24.83 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+.+...+.+.+..|..|...+..-++-.......+..|+.+.+..+.+
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ 82 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRES 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777888777777777777777777788777766654
No 291
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=53.18 E-value=70 Score=33.46 Aligned_cols=68 Identities=24% Similarity=0.438 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRAK 305 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l--------~~ENr~Lraql~~Lrak 305 (306)
+..++|.+.-+.-+|. .+.+.+|+.+++.-+.|+....-+-..|..+..++ -.||..++++|+.||..
T Consensus 242 ehv~km~kdle~Lq~a----Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 242 EHVNKMMKDLEGLQRA----EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 3444555544444332 35666666666666666555444444444444422 36788888888888754
No 292
>PLN02939 transferase, transferring glycosyl groups
Probab=53.11 E-value=86 Score=35.56 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 281 VNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 281 L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
|.+++..+..||..||.+++.|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67888999999999999999998864
No 293
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=53.08 E-value=40 Score=28.54 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
=|.-|++|-++|...+.||-.|+.+++-|-|-+..|+.--.+.
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVF 110 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVF 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhh
Confidence 3567899999999999999999999988887777776655444
No 294
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=53.03 E-value=4.5 Score=43.19 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE---SAVNNRILKADIETLRAK 305 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~---l~~ENr~Lraql~~Lrak 305 (306)
++|.+-+.+|..+|..|+..|..|..+...|..++.. +..+...++.++..|..+
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~ 378 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQK 378 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888889999999888888877777666554 334444555555555443
No 295
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=52.72 E-value=97 Score=28.38 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
....++..-..+...+..++..|..+|..|+.||
T Consensus 154 ~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 154 SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666667777777777777776653
No 296
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=52.58 E-value=1.4e+02 Score=28.09 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
..|.++....+.|-..|++++..|+
T Consensus 115 ~~L~~~k~kqe~e~s~L~k~vtAL~ 139 (229)
T KOG1319|consen 115 QFLHKEKKKQEEEVSTLRKDVTALK 139 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666777777777665
No 297
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=52.47 E-value=1.5e+02 Score=25.40 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l-------~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
-.+...++..++..+..|..++ +.+..+-..+..+...|+.++++|.+.
T Consensus 67 ~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~ 122 (141)
T PF13874_consen 67 DLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQ 122 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3445555666666666555544 333444444555566666666666544
No 298
>PF14645 Chibby: Chibby family
Probab=52.42 E-value=56 Score=27.67 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
..|+++.+.|+-++.-|..-+++..
T Consensus 81 ~~L~EENN~Lklk~elLlDMLtett 105 (116)
T PF14645_consen 81 QQLEEENNLLKLKIELLLDMLTETT 105 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554433
No 299
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=52.23 E-value=91 Score=28.60 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.-|++-|+.||.+|...+.-.......|...+.-......-....+.++..|+.
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~ 116 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKA 116 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999988888888877777776666666666666666666654
No 300
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.19 E-value=93 Score=29.32 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=34.8
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNEL---ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 254 k~~l~eL---E~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..|+++| ...+..|+.....+..+..........+..|=..|+.+|..||.
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555 56677777777777777776677777777777777777777764
No 301
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=52.15 E-value=51 Score=36.31 Aligned_cols=51 Identities=27% Similarity=0.394 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLK---------------------GLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~---------------------~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+|.++..++..+..||..|.. ++..|..++..++-||..||-++..|..
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~k 162 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSK 162 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777778888877665 3456777888888888888888776653
No 302
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.01 E-value=58 Score=34.76 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhhhh
Q 021874 112 DEYRAYLKTKLDLA 125 (306)
Q Consensus 112 ~~y~a~Lk~kL~~~ 125 (306)
.+|..--..+|+.-
T Consensus 239 ~e~~~~K~~~l~~~ 252 (594)
T PF05667_consen 239 EEYRKRKQQRLQKR 252 (594)
T ss_pred hhhhHHHHHHHHHH
Confidence 45554444444433
No 303
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=51.95 E-value=71 Score=34.59 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
..|.+||.+-+.|..|.+++...+++|++.+.....|-..||-.|++
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 56777777777777777777777777777766666666666655544
No 304
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=51.78 E-value=17 Score=30.18 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
...+.....+...|..|+.++...+.
T Consensus 40 a~ar~e~~~~e~k~~~le~~l~e~~~ 65 (100)
T PF06428_consen 40 ADARRERAALEEKNEQLEKQLKEKEA 65 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666665554443
No 305
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=51.68 E-value=32 Score=29.44 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L 274 (306)
|..|..|+.++|+.++ ++.+++|+.++..|+.+...+
T Consensus 95 E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 95 EYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655544432 245566666666666555544
No 306
>PRK02224 chromosome segregation protein; Provisional
Probab=51.65 E-value=1.9e+02 Score=31.34 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 021874 256 HLNELETQAGQL 267 (306)
Q Consensus 256 ~l~eLE~qV~~L 267 (306)
.+.+|+.++..+
T Consensus 510 ~l~~l~~~~~~l 521 (880)
T PRK02224 510 RIERLEERREDL 521 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333443333333
No 307
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.14 E-value=1.5e+02 Score=29.25 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+|..++..+..+-..|..++..+.++...+..+-..|..+|..|+.+
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k 77 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK 77 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666655555555555555555555543
No 308
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=51.09 E-value=1e+02 Score=27.22 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLK---GLTDVNQKYDESAVNNR 293 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~---~l~~L~qk~~~l~~ENr 293 (306)
++.|+.++.....+...|.. -++.|+.++..|..+|.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33444444443333333433 23344444444444444
No 309
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=50.69 E-value=2.4e+02 Score=27.41 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLN-ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~-eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
+|.|-.-|.+-.+.--=++..|-|.-.. +|..-.++-..-..+|+.++++|+++.+++.-.-.-||+.+..|
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~Asl 84 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASL 84 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHH
Confidence 3444444555555555555555444333 34433333333334444445555554444444444444444443
No 310
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=50.50 E-value=1.5e+02 Score=24.79 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 280 DVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 280 ~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.+.+++..|..+|..|++++..|
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L 83 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDL 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444
No 311
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.33 E-value=1.1e+02 Score=23.17 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
+..|..+|.+|..+...|+..+...+. ++..-|.+|--.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~---EAaRAN~RlDN~ 50 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKE---EAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 345666666666666666665554433 344445555433
No 312
>PF15556 Zwint: ZW10 interactor
Probab=50.21 E-value=2.1e+02 Score=27.24 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|++--|.++|.+-..-......||..|..-.. +++.+....++++..+..+-..|+.+...-|.|
T Consensus 112 aKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sA-------Evrerq~~~qqeLe~l~qeL~~lkqQa~qeqdK 177 (252)
T PF15556_consen 112 AKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSA-------EVRERQTGTQQELERLYQELGTLKQQAGQEQDK 177 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444455555544333 333444444444444444445555554444443
No 313
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=50.20 E-value=1.7e+02 Score=27.22 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 230 SVDDKRARRMLSNRESARRSRRRKQAH----LNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~----l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
.+-.+|.||....+.++=.-+-+=.+. |...-.+|..|+..|+.|...+.+|+.-|..|
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFL 81 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFL 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 345788888888877775444332221 22222345556666666666665555444433
No 314
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=50.14 E-value=43 Score=27.75 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 021874 290 VNNRILKADI 299 (306)
Q Consensus 290 ~ENr~Lraql 299 (306)
.||..||.-+
T Consensus 92 ~E~diLKKa~ 101 (121)
T PRK09413 92 MENELLKEAV 101 (121)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 315
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=49.78 E-value=72 Score=31.83 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=7.5
Q ss_pred CChHHHHHHHHhhh
Q 021874 109 VDSDEYRAYLKTKL 122 (306)
Q Consensus 109 ~dp~~y~a~Lk~kL 122 (306)
+.-.+|-+.|+.-|
T Consensus 61 ~~~~eYv~~l~kaL 74 (342)
T PF06632_consen 61 MEVEEYVQELKKAL 74 (342)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44556666666544
No 316
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=49.52 E-value=1.1e+02 Score=25.59 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
-..-||.|+.-..=++...+.|+.--++|..|...-.++|..|.+++
T Consensus 53 ~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 53 AFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34446667766655555555555555555555555666666655543
No 317
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=49.50 E-value=2.2e+02 Score=26.52 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 276 KGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 276 ~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
++|.+|..+...|..||..||.-.--
T Consensus 115 ~KL~eLE~kq~~L~rEN~eLKElcl~ 140 (195)
T PF10226_consen 115 QKLKELEDKQEELIRENLELKELCLY 140 (195)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44555556666666666666654433
No 318
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=49.41 E-value=1.5e+02 Score=33.86 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.1
Q ss_pred HHHHHH
Q 021874 274 LLKGLT 279 (306)
Q Consensus 274 L~~~l~ 279 (306)
|..++.
T Consensus 402 l~~~i~ 407 (1163)
T COG1196 402 LKREIE 407 (1163)
T ss_pred HHHHHH
Confidence 333333
No 319
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=49.27 E-value=58 Score=25.48 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
..|+.++..++.+...|..++..+..++..+...
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554444444444433
No 320
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=49.22 E-value=2.1e+02 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 264 V~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..-|+.|-..|+++++.=+.++..++.|+..+..++..=+.|
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k 177 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTK 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888888999999888888899999998888777665443
No 321
>PRK14127 cell division protein GpsB; Provisional
Probab=49.19 E-value=45 Score=28.15 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr 293 (306)
++|+.+-..++.|..||..|..++..|++++..+..+-.
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777777778888888777777777777666665443
No 322
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=49.10 E-value=51 Score=33.15 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 264 V~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
...|+.++..|..++..+..++..+..+...|+.++..|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555555544445555544443
No 323
>PRK04863 mukB cell division protein MukB; Provisional
Probab=49.00 E-value=1.8e+02 Score=34.44 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 021874 259 ELETQAGQ 266 (306)
Q Consensus 259 eLE~qV~~ 266 (306)
+|+.++..
T Consensus 359 ELee~Lee 366 (1486)
T PRK04863 359 ELEERLEE 366 (1486)
T ss_pred HHHHHHHH
Confidence 33333333
No 324
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=48.91 E-value=63 Score=24.57 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
+++|+.++..|+.|...+...+..-.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888877766433
No 325
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=48.82 E-value=53 Score=32.80 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
+.-.|.++.+.|+.||..|..++.. +..+..||..|+..+
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll 97 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 3455555555666666555555442 455667788776543
No 326
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.57 E-value=1.8e+02 Score=33.60 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKG---LTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~---l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+..+..+.-+.+++..+..|+.++..++.+...|... ...|..++..+..++..|+..+..++
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~ 908 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAK 908 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666655555544444433322 23344444444444444444444443
No 327
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.45 E-value=2.1e+02 Score=25.79 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
++.+..++.++..|+.....|..++..++.+...+......-+
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555554444433
No 328
>PHA03161 hypothetical protein; Provisional
Probab=48.43 E-value=1.3e+02 Score=26.88 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
.+++..|..|..+.....++++.|.
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~~~L~ 81 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKELSLLK 81 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445544444444444444444
No 329
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.12 E-value=82 Score=33.85 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 283 QKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 283 qk~~~l~~ENr~Lraql~~Lr 303 (306)
..+..|..||..|++++..|.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 556667778888877776553
No 330
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=48.09 E-value=1.4e+02 Score=25.69 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=47.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
.|..+.|...---|.==++++..||-+...++.-|..|.+++..|...+......+..|+
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 355666777777777777888999999999999999999999988888887777766554
No 331
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=48.08 E-value=1.6e+02 Score=24.43 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 265 ~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
..-+.+...+..++..|.+++.........|+.+|..|.
T Consensus 40 a~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK 78 (100)
T PF06428_consen 40 ADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELK 78 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555544444444444444443
No 332
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.73 E-value=1.3e+02 Score=29.13 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=7.7
Q ss_pred ChHHHHHHHHhh
Q 021874 110 DSDEYRAYLKTK 121 (306)
Q Consensus 110 dp~~y~a~Lk~k 121 (306)
|-.....+|+++
T Consensus 65 ~~~~~~e~L~Sr 76 (362)
T TIGR01010 65 DTYTVQEYMRSR 76 (362)
T ss_pred cHHHHHHHHhhH
Confidence 444555788877
No 333
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=47.64 E-value=82 Score=27.26 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
...+..|+.++...+.....-...+..|++.+..+..+++.+..++..+
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
No 334
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=47.64 E-value=2.3e+02 Score=26.15 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
...++.++..|+......-.+...+...+..|..++..|..+|...+
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555554443
No 335
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=47.58 E-value=91 Score=25.42 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
.+...|..||+.|..+.. ......+|...|++.++
T Consensus 30 ~~~~kL~~en~qlk~Ek~-----~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKA-----VAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHH
Confidence 334445555555444433 23344566666665543
No 336
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=47.36 E-value=1e+02 Score=27.54 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
.|...|+.++..++.++..|...+.....++......=..+..++..
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~ 125 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDV 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45555666666666666666555555444444444444444444433
No 337
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=47.10 E-value=13 Score=32.35 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
||+..-..+..++...+.+|-.+..++.+|++.+..+..+
T Consensus 80 rk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~e 119 (133)
T PF06424_consen 80 RKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSEE 119 (133)
T ss_pred ccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCHH
Confidence 3334445566777788888888999999998888776543
No 338
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=47.09 E-value=1.5e+02 Score=23.69 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+-+..|+..-..|..-|.....++..+...|..-..-=..+|.+|+....||
T Consensus 22 ~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~kri 73 (88)
T PF10241_consen 22 QTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRI 73 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777888888888888777776666666777776665553
No 339
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=47.05 E-value=2.1e+02 Score=25.55 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=29.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 239 MLSNRESARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~-------qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
++.+-+.|...-.||++.++.|.. ++..++.+...+..++..++.++..+.
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666655543 356666666666666666666666653
No 340
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.79 E-value=1.2e+02 Score=26.15 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 238 RMLSNRESARRSRRRKQAHLNELE-------TQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE-------~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
+++..-+.+...-.+|++.++.|+ .+|..|+.+...+..++..+..++..+
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666664 255666666666666666555555544
No 341
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=46.74 E-value=1e+02 Score=27.27 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVN--------QKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~--------qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++.|+.+++.|+.+...+..++.... ..|+....+-+.|..+|..|..+
T Consensus 13 ~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~ 69 (158)
T PRK05892 13 RDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRR 69 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444432221 23555666666666666666654
No 342
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=46.70 E-value=1.3e+02 Score=25.42 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=30.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
=+..|+.-|.+.=. ++..++++..++..+-.+...|..++..+.+++..+
T Consensus 39 l~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 39 LLAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665432 346666677777766666667777766666666665
No 343
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.49 E-value=2e+02 Score=33.25 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=7.6
Q ss_pred hHHHHHHhhh
Q 021874 37 WELEKFLQEV 46 (306)
Q Consensus 37 W~FekfLeE~ 46 (306)
=+|++||+++
T Consensus 663 ~~~~k~ie~a 672 (1311)
T TIGR00606 663 AVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHH
Confidence 4678888887
No 344
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=46.45 E-value=37 Score=31.45 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 266 ~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
+|+.+...|+.++..|...+..|..++..|++++..+
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~ 145 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSL 145 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Confidence 3444444555555555555555555555555555543
No 345
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.39 E-value=1.4e+02 Score=25.05 Aligned_cols=52 Identities=23% Similarity=0.216 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
|=.||.+++-.++-...|--.|. -+.|+..|..++..+..+......+..++
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 44677777643333333322222 34456677777777777766666665543
No 346
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=45.99 E-value=2.2e+02 Score=30.98 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+..|..++..|+.+...|..++..+.+.+......+..+..++..++.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 290 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEE 290 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666665555443
No 347
>PLN03188 kinesin-12 family protein; Provisional
Probab=45.99 E-value=88 Score=36.46 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 264 AGQLRAEHSSLLKGLTD------------------------VNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 264 V~~Le~EN~~L~~~l~~------------------------L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
...|+.||..|+.+|.+ .++++..++.||..|+++|+.|+.|
T Consensus 1175 r~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrk 1240 (1320)
T PLN03188 1175 RRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRK 1240 (1320)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455559888877653 3467777889999999999999886
No 348
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=45.90 E-value=1.5e+02 Score=25.97 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=2.2
Q ss_pred HHHHHH
Q 021874 234 KRARRM 239 (306)
Q Consensus 234 KR~RR~ 239 (306)
.+.|++
T Consensus 66 ~~Lk~~ 71 (177)
T PF13870_consen 66 LKLKKK 71 (177)
T ss_pred HHHHHH
Confidence 333333
No 349
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.90 E-value=75 Score=33.19 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 241 SNRESARRSRRRKQAH----LNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 241 sNRESArRSR~RKk~~----l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
+|-++++.+=.||.+. ++.++.+...++.+|..|.+...
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444444444444332 23444445555555555444433
No 350
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=45.88 E-value=90 Score=29.56 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021874 283 QKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 283 qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.++..+..||..|+.+|+.|+.+
T Consensus 116 sEF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777766654
No 351
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.82 E-value=84 Score=27.07 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
.|..-+++|+.+++.|+-+...|.++-..+++++..+..
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555544443
No 352
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=45.75 E-value=88 Score=24.69 Aligned_cols=24 Identities=8% Similarity=0.218 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 282 NQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 282 ~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+++..|+.+++..++-+..++.+
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555443
No 353
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=45.61 E-value=1.4e+02 Score=26.23 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.+++....+..|.........+-..+...+..|..+...|..-.+.++.+|
T Consensus 22 ~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 72 (157)
T PF04136_consen 22 QTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKL 72 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666666666666777777778888888887777777664
No 354
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=45.59 E-value=1.7e+02 Score=25.13 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGL-TDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l-~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
..++...+.+|+.++......+ ..+.++....+..-..+..+|..|
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555444444 222333333334444444444443
No 355
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=45.59 E-value=1.9e+02 Score=30.12 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 245 SARRSRRRKQAHLNELET-----QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 245 SArRSR~RKk~~l~eLE~-----qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
-|-+-+..-+++++.||. .+.+|..|-..|..+-..|-+++..+..++..|--++.+++.|
T Consensus 154 ~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667778887775 3555666666666666677777777777777777766666654
No 356
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.52 E-value=1.6e+02 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
.|-.++.+++.|...|..|.++++.|+..+.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666665555
No 357
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.50 E-value=2.2e+02 Score=31.17 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 283 QKYDESAVNNRILKADIET 301 (306)
Q Consensus 283 qk~~~l~~ENr~Lraql~~ 301 (306)
++|..+...-+.|..+++.
T Consensus 600 eR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 600 ERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 358
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=45.48 E-value=1.5e+02 Score=25.17 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021874 280 DVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 280 ~L~qk~~~l~~ENr~Lraql~~ 301 (306)
...+++..+..+|..|+.+|..
T Consensus 39 k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 39 KYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHHc
Confidence 3445666778888888887764
No 359
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.45 E-value=2.7e+02 Score=29.14 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~ 282 (306)
.++..++.++..+..++..++
T Consensus 67 ~~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 67 NEVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333333333
No 360
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.27 E-value=1.3e+02 Score=28.58 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
|-.++-|+-+|---.+|.+++.. ++.+...|..++..+..+.... |+.||.+++.-
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k-------~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf 207 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALAN-------KKADRDLLKEEIEKLEDKVECA---NNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34455555444444444444433 4444445555555555555555 55577666543
No 361
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.08 E-value=3e+02 Score=28.83 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKG 277 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~ 277 (306)
+..+..+...++.++..|..+
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~ 89 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333
No 362
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.99 E-value=2e+02 Score=24.77 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 248 RSRRRKQAHLNELETQAGQLRAEHSSL 274 (306)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~Le~EN~~L 274 (306)
.-|.++..++..++..+...+.+...|
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455554444444443333
No 363
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=44.90 E-value=90 Score=30.23 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021874 278 LTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lraql 299 (306)
..+|+.++..+..+-+.|++++
T Consensus 223 ~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 223 KSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444444444444444433
No 364
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.80 E-value=1.8e+02 Score=33.84 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=10.6
Q ss_pred CCcchhHHHHHHhhhh
Q 021874 32 RSQSEWELEKFLQEVT 47 (306)
Q Consensus 32 rs~SEW~FekfLeE~~ 47 (306)
=|.=+-.||++.....
T Consensus 159 SCsV~vhFq~iiD~~~ 174 (1293)
T KOG0996|consen 159 SCSVEVHFQKIIDKPG 174 (1293)
T ss_pred ceeEEEeeeeeeccCC
Confidence 3666777888775543
No 365
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=44.45 E-value=2.3e+02 Score=25.25 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021874 265 GQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 265 ~~Le~EN~~L~~~l~~L~ 282 (306)
..++.++..|..++..|+
T Consensus 85 d~~~~e~k~L~~~v~~Le 102 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLE 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554433
No 366
>PLN02678 seryl-tRNA synthetase
Probab=44.28 E-value=1.9e+02 Score=29.87 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNR---ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN---QKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 231 ~e~KR~RR~lsNR---ESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~---qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+....++.+++| .+.----..--+....|..+++.|+.+-+.+.+++..+. +....+..+=+.|+.++..|..
T Consensus 13 ~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~ 92 (448)
T PLN02678 13 GDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEA 92 (448)
T ss_pred cCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q ss_pred hC
Q 021874 305 KM 306 (306)
Q Consensus 305 kv 306 (306)
++
T Consensus 93 ~~ 94 (448)
T PLN02678 93 EV 94 (448)
T ss_pred HH
No 367
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=44.11 E-value=1.2e+02 Score=30.18 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
-|++..+.+++|+.+...|..+|...+..|..|..++..+..--.-|+..
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~ 151 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEY 151 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 36677788899999999999999999999888888888776555544443
No 368
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.00 E-value=1.3e+02 Score=29.81 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021874 285 YDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 285 ~~~l~~ENr~Lraql~~Lrak 305 (306)
++++..|=+.||+-|+++|..
T Consensus 119 LKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455666777777777777754
No 369
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=43.91 E-value=1.7e+02 Score=30.57 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.++..|++..++.+.+..+-.+.+.++++||..=|
T Consensus 243 ~~ee~tkrm~eqrkrer~e~~aareRI~aqiaadr 277 (506)
T KOG2507|consen 243 GTEENTKRMREQRKRERKEGTAARERILAQIAADR 277 (506)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 35677777788888888888888999998886544
No 370
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=43.82 E-value=1.8e+02 Score=30.28 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.-+..++..++.+.+.|+.++.+|++++-.+.
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544433
No 371
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=43.64 E-value=2.7e+02 Score=29.68 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++++.++..|..|..-+..+..++.....+...+..+=..|+.+.+.++.|
T Consensus 45 ~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k 95 (618)
T PF06419_consen 45 RQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELK 95 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888888887777777777777777777777666654
No 372
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.55 E-value=2e+02 Score=35.11 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.++...++.+...++.|..++..|+++
T Consensus 1508 ~e~~k~v~elek~~r~le~e~~elQ~a 1534 (1930)
T KOG0161|consen 1508 DEGGKRVHELEKEKRRLEQEKEELQAA 1534 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555543
No 373
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=43.27 E-value=1.9e+02 Score=25.83 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=15.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAE 270 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~E 270 (306)
.|-.+.+|..+..--..-+.++.....++..|+..
T Consensus 123 vk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~ 157 (236)
T PF09325_consen 123 VKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKAS 157 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444444444444444444444444444444443
No 374
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.26 E-value=2.8e+02 Score=30.35 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+|..+++++.....+|++.+...+.++..|..+-..-+-++++|++
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555555554444444555543
No 375
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=43.22 E-value=1.2e+02 Score=25.33 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
|+..+-.-|+.|..--..|++++..|..-+..|...|..
T Consensus 58 Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 58 QSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555667777777788888888888888888887764
No 376
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=43.22 E-value=2.2e+02 Score=26.81 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 021874 290 VNNRILKADI 299 (306)
Q Consensus 290 ~ENr~Lraql 299 (306)
.|...|+.++
T Consensus 103 ~Ea~~lq~el 112 (246)
T PF00769_consen 103 EEAEELQEEL 112 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 377
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=42.86 E-value=1.9e+02 Score=24.36 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 266 ~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.|+.+...--..|..+.+++..|.-.|..|-.+|+.|..
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444555555566666666666666543
No 378
>PRK15396 murein lipoprotein; Provisional
Probab=42.81 E-value=1.7e+02 Score=23.32 Aligned_cols=39 Identities=10% Similarity=0.203 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~ 294 (306)
.++.|..+|+.|..+-..|...+..++........|-.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666555554444333
No 379
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=42.30 E-value=1.5e+02 Score=27.78 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 021874 292 NRILKADIET 301 (306)
Q Consensus 292 Nr~Lraql~~ 301 (306)
-..|..+|..
T Consensus 122 ~~~Le~Ki~e 131 (225)
T COG1842 122 LAALEQKIAE 131 (225)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 380
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=42.14 E-value=2.4e+02 Score=25.85 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
+.-=++|++++.+.+.+...++.+..+|..++...+
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344556666666666666655555555555433
No 381
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=42.07 E-value=2.2e+02 Score=28.13 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELE--------------TQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE--------------~qV~~Le~EN~~L~~~l~~L~ 282 (306)
...++.-+..+-+--++-|..|+-+|+-|| .++..|+.||..|......|.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 344444444444444555555555555554 344556666666655444443
No 382
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.82 E-value=1.5e+02 Score=26.95 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 283 QKYDESAVNNRILKADIET 301 (306)
Q Consensus 283 qk~~~l~~ENr~Lraql~~ 301 (306)
+++..|..++..|+.++..
T Consensus 110 ~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 110 EELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555543
No 383
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=41.74 E-value=1.1e+02 Score=31.70 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQL--------------RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 252 RKk~~l~eLE~qV~~L--------------e~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
=|++|-++|+.+++.- ..+.+.+..+|+-|.++|...--||..|-+.++.-
T Consensus 390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEae 454 (593)
T KOG4807|consen 390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAE 454 (593)
T ss_pred HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777665432 24455677777777888877777777776666543
No 384
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.74 E-value=2.2e+02 Score=24.13 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
.+...++.....-..=.+..-.++.++..++.+...+..++..|..+|..+..+
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444555555555555555555554444444443
No 385
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=41.73 E-value=1.8e+02 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
+.++..++.+...|..++..|++++..+.
T Consensus 98 ~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 98 AKALDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555555555554443
No 386
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=41.71 E-value=1.9e+02 Score=26.34 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
++.++.|+.+.......+..+...+..|.
T Consensus 45 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 73 (177)
T PF03234_consen 45 KQEIEELKYERKINEKLLKRIQKLLSALD 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455565555554444444444444333
No 387
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.70 E-value=3.5e+02 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.|+..+..|+.+...|.+.++.+..-+-.+......|+.++..|++
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888877777777777777777777765
No 388
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=41.69 E-value=1.3e+02 Score=36.50 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
|..+.+.-..+.+|..++..|+.+...|...+..|..++....+++..|+......+.
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~ 1292 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQ 1292 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777777776666666666666666655554443
No 389
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.63 E-value=1.1e+02 Score=30.91 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 274 LLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
|......+.+++..+..+-..|+.+++.
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 390
>PRK14143 heat shock protein GrpE; Provisional
Probab=41.10 E-value=85 Score=29.79 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
.+.+|..++..+..+...++++..
T Consensus 82 e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 82 ELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444
No 391
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=41.06 E-value=81 Score=28.70 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---VNNRILK 296 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~---~ENr~Lr 296 (306)
.+++..|+.+++.|+.++..|..++..+++.|..|. ..++.|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~~ 155 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRMA 155 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 477788999999999999999999988888887765 3444443
No 392
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=41.00 E-value=1.8e+02 Score=31.85 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+.++..-=|.+++..+.++.+++.....+..++..+..+...+..|+..|+-.++.++
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444556677777777777777777778888888887888888888877776654
No 393
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=40.93 E-value=1.8e+02 Score=28.38 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
.+.+|+.+++.++.+...+..++.+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIAD 59 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443
No 394
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=40.88 E-value=1.2e+02 Score=33.24 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
..+...+.||..|...+.++...+..++.+-..||.+|..++
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555666666666666666655544
No 395
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=40.70 E-value=1.7e+02 Score=25.95 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 250 RRRKQAHLNELETQAGQLR 268 (306)
Q Consensus 250 R~RKk~~l~eLE~qV~~Le 268 (306)
-++|++||.+|..|...|+
T Consensus 17 I~~K~~~LqEL~~Q~va~k 35 (142)
T PF08781_consen 17 IKKKKEQLQELILQQVAFK 35 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3788899999998877654
No 396
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.65 E-value=3.4e+02 Score=27.19 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.++..|..+...+..++..++++|..+......+..++..|..
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555666666666666666776666666666655555555443
No 397
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=40.43 E-value=51 Score=25.98 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
.|..|..+-..+.-|+-.|++++..+++++...
T Consensus 9 lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 9 LLSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777887777777765443
No 398
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=40.29 E-value=88 Score=31.30 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l 278 (306)
.+|++.|+.++..|+.+...|..++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l 265 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKL 265 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777766654
No 399
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=40.26 E-value=2.2e+02 Score=32.22 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=0.0
Q ss_pred cccchhcccCCchHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 219 EGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQ----AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (306)
Q Consensus 219 eg~~~~~~~~d~~e~KR~RR~lsNRESArRSR~RKk----~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~ 294 (306)
+|+.++....=..+-++.+|-+..=.-|-.--+||. ..+++||.+-..+......|...+......++.|..+-..
T Consensus 311 ~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~ae 390 (1265)
T KOG0976|consen 311 DGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAE 390 (1265)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhC
Q 021874 295 LKADIETLRAKM 306 (306)
Q Consensus 295 Lraql~~Lrakv 306 (306)
+.+||..|..+|
T Consensus 391 rqeQidelKn~i 402 (1265)
T KOG0976|consen 391 RQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHhh
No 400
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.95 E-value=1e+02 Score=33.26 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~q---k~~~l~~ENr~Lraql~~Lra 304 (306)
.|-.....|+.||-.|.+++..|++ .|.++..||++|..+++-|..
T Consensus 167 RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~ 215 (772)
T KOG0999|consen 167 RLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNS 215 (772)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3446677788888888888887765 577788888888777766643
No 401
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=39.77 E-value=1.5e+02 Score=23.61 Aligned_cols=50 Identities=16% Similarity=0.363 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTD---VNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~---L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+-+..+..||..|+..-..|...+.. |+.++.++.+.=..|..++..+..
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666554433 666666666555555555555443
No 402
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.61 E-value=2.9e+02 Score=31.97 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 265 ~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.++-..|..|..++....++...+..+|...++++..++.
T Consensus 261 ~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q 300 (1109)
T PRK10929 261 VAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQ 300 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344568888899999999988898888888877777654
No 403
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.57 E-value=1.3e+02 Score=32.06 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.++++-..++.++...+..+...+.++|+.+..++.....||..|..+|..|..|
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555566666666666666666666666677777777777777777776655
No 404
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=39.46 E-value=4.6e+02 Score=27.31 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
+.+..|..+...|+.+...|..+-..|..+.+.|.++-..|.
T Consensus 137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444
No 405
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.41 E-value=89 Score=26.91 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
..++.||.+|..|+.+-..|..++..|+..+..+-.
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345777888888888888888888888877766544
No 406
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=39.34 E-value=2.5e+02 Score=29.20 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l 278 (306)
|--+|+.--.|-.+...+|..++..|-.+...|..+.
T Consensus 131 n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~ 167 (499)
T COG4372 131 NLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQA 167 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333333444444444333333333333
No 407
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.17 E-value=2.2e+02 Score=34.76 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=48.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+.-.+.+++++.-=++++..++.++..|+.|+..|+..+..+...-..++.+...+..++..+++
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~ 1709 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNA 1709 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 334667888888888888888888888888888888888777777666666666666666666553
No 408
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=38.71 E-value=98 Score=30.02 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
.-++.|+.++..|+.||..|+.++..++.++...
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~ 65 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAA 65 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888877777777666555433
No 409
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=38.64 E-value=88 Score=29.20 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L 281 (306)
++...+-|..++..|+.++..|+..+..+
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 33444555566666666666666666654
No 410
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.63 E-value=4.1e+02 Score=28.23 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=4.3
Q ss_pred HHHHHhhh
Q 021874 39 LEKFLQEV 46 (306)
Q Consensus 39 FekfLeE~ 46 (306)
|++||...
T Consensus 67 y~~~l~~~ 74 (650)
T TIGR03185 67 YEQYLRGL 74 (650)
T ss_pred HHHHHHHH
Confidence 45566554
No 411
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=38.35 E-value=2.5e+02 Score=26.83 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 284 KYDESAVNNRILKADIETL 302 (306)
Q Consensus 284 k~~~l~~ENr~Lraql~~L 302 (306)
....|..-|+.||+|++.+
T Consensus 236 ei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 236 EIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445566677777777654
No 412
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=38.29 E-value=1.7e+02 Score=31.04 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDV---N----QKYDESAVNNRILKADIETL 302 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L---~----qk~~~l~~ENr~Lraql~~L 302 (306)
..++.||.++..|+.+...|..++..- . .++..+..+=..++.+++.|
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEEC 617 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778877777777666665421 0 13344444444455544444
No 413
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=38.27 E-value=1.1e+02 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
.-.++||.+|+.+=.+.+.|+..+..+..+++.++.+-..++.+
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66788888888777777777777777776666666665555543
No 414
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.25 E-value=2.5e+02 Score=28.24 Aligned_cols=51 Identities=10% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHS--------SLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~--------~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.+++.|.++..++.+|. .+..++..+++++..+..+-..+++++..|+++
T Consensus 175 ~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 175 KKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332 234555566666666666655555555555543
No 415
>PRK11239 hypothetical protein; Provisional
Probab=37.97 E-value=57 Score=30.75 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
..|+.+|..|+.|...|+.++..|..++
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688888888888888888888776654
No 416
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.90 E-value=63 Score=31.59 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
-+-++.-=..++..|.+|+.++..|+.+......+...|..+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455566666666666665555554444444433
No 417
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=37.80 E-value=3.4e+02 Score=31.80 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 021874 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN----NRILKADIETLRA 304 (306)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E----Nr~Lraql~~Lra 304 (306)
...|++....-++++++++..+...+.+...+..++..+..++..+..- ...|.++|+.+++
T Consensus 870 L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~ 935 (1353)
T TIGR02680 870 LRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRA 935 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666666555555555555554443322 3344444444443
No 418
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=37.73 E-value=1.9e+02 Score=26.49 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 285 YDESAVNNRILKADIETLR 303 (306)
Q Consensus 285 ~~~l~~ENr~Lraql~~Lr 303 (306)
...+..+-..|+.+|...+
T Consensus 155 ~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 155 REELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555444
No 419
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=37.67 E-value=3.9e+02 Score=26.58 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
+.||.++.+|+.||--|+++|.++..+..
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999887765543
No 420
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.51 E-value=3.7e+02 Score=27.59 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.+|..-...+..+...|..++..+.++...+..+=..|+.++..|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556666666666666666677777777766666766666653
No 421
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.37 E-value=3.5e+02 Score=31.24 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
..+.|.-+++.|+.+...+..++..+..++..+..++..|+..+..
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677777777777777777777777777777666655543
No 422
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=37.36 E-value=11 Score=35.75 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
-.|++...++.+|+.-...|..+++.|++....|..||..|
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555566666666
No 423
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=37.36 E-value=1.2e+02 Score=31.81 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVN------QKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~------qk~~~l~~ENr~Lraql~~Lra 304 (306)
++.||.++..|+.+...|..++..-. .++..+..+=..++.+++.|-+
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFE 623 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999888888887777764321 1455555555566666655543
No 424
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=37.33 E-value=28 Score=36.35 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
+|++|++|+++|+.+...|..++..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 4555555555555555544444433
No 425
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=37.33 E-value=5.4e+02 Score=29.65 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD-----VNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~-----L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
|....-|-+.||.--+-++++..+|-++++.+-.+|+...+.|++=+.+ +++-...++.|-..|++.+..-|
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr 1102 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKR 1102 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557788898888899999899899998888888888777654332 23333344556666776666554
No 426
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=37.29 E-value=2e+02 Score=26.02 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA-VNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~-~ENr~Lraql~~Lr 303 (306)
..|+.|+..++.|......+.+.+..+..++.... .+-..|..++..|+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~ 128 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELK 128 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766666665554443222 23455556665554
No 427
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.11 E-value=1e+02 Score=28.93 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
-|+..++-+|.++..|+.--.++..++.-|+++=.++...|+.-..++..+
T Consensus 131 AKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~f 181 (210)
T KOG1691|consen 131 AKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWF 181 (210)
T ss_pred HhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 466889999999999999999999999999999999999999988877654
No 428
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=37.08 E-value=2.9e+02 Score=26.71 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
=+.-..+-..++..|+.+|..|.++......++..|.
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556667777777777766666665555443
No 429
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=36.95 E-value=2e+02 Score=22.36 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
++.+..++..|...-..|..++..+..++.
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 430
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=36.95 E-value=3.5e+02 Score=29.96 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
++|.+-...+..|.....+|+.+...-...+..+..++..+.
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar 548 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAAR 548 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666555554444444444444333
No 431
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=36.92 E-value=1.7e+02 Score=23.04 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
...|..|..|+..|..++..+++++..+..
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~~k~ 31 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQKLKE 31 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444433
No 432
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=36.89 E-value=1.6e+02 Score=29.80 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRK---------QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RK---------k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
+.|-++-|++| ||.--.|- |-.|++++.++..-..||..+.+++..++.-+..|...-..||+.|..
T Consensus 125 eekykkaMvsn---aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 125 EEKYKKAMVSN---AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHH---HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667776 33222221 456677888888888888888888888888888888888888776643
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.83 E-value=2.1e+02 Score=31.50 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.8
Q ss_pred cCCCccccC
Q 021874 67 IGPSVMSKS 75 (306)
Q Consensus 67 ~~~~~~~~s 75 (306)
.+|+++.+|
T Consensus 328 tGpNg~GKS 336 (771)
T TIGR01069 328 TGPNTGGKT 336 (771)
T ss_pred ECCCCCCch
Confidence 344444433
No 434
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=36.73 E-value=77 Score=27.22 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLL 275 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~ 275 (306)
..+.+|+.++..|+.||.-|+
T Consensus 74 ~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 74 EQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777766554
No 435
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.41 E-value=85 Score=22.69 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
+-|..=.+.|..||..|.+++++|+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888888888887765
No 436
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=36.21 E-value=1.7e+02 Score=29.09 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAV--NNRILKADIETL 302 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~--ENr~Lraql~~L 302 (306)
.++..+..|+.+...+..++..+++++..+.. .+.-+.++++.|
T Consensus 90 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 90 QQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
Confidence 44444555555566666666666666655543 333344554443
No 437
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=36.15 E-value=1.7e+02 Score=30.42 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
+||+-|.-|-+-+-..+-+++.+|..|+.+...|++.|.
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~ 437 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLN 437 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888887775666777788888888877777665543
No 438
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=36.12 E-value=2e+02 Score=30.78 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021874 285 YDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 285 ~~~l~~ENr~Lraql~~Lrak 305 (306)
+..+...-..|+.++..++++
T Consensus 347 ~~~a~~~~~~L~~~l~~~~~~ 367 (754)
T TIGR01005 347 ADAAQARESQLVSDVNQLKAA 367 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555666666554
No 439
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=36.07 E-value=1.9e+02 Score=30.70 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.+--|.+|+... -..+.+|-.+.+.+.+..+..-+.+-..|--.+...+.++..+..+|+.++.+++.|..|
T Consensus 27 e~ef~rl~k~fed---~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~ 99 (604)
T KOG3564|consen 27 EDEFIRLRKDFED---FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQ 99 (604)
T ss_pred HHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4555566665432 233344444556666677777777777787888888888888888888888888887765
No 440
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.00 E-value=1.8e+02 Score=33.87 Aligned_cols=48 Identities=25% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.+....+..++.+...+..++.++...+..+..+-+.|+.++..+|+|
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQR 585 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444444444444
No 441
>PF14645 Chibby: Chibby family
Probab=35.92 E-value=1.8e+02 Score=24.65 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
...|..+..+|+.||+-|+-+++.|--=+....+|-..+..++
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456778888888888888888877766666666666555554
No 442
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=35.88 E-value=1.1e+02 Score=31.47 Aligned_cols=45 Identities=7% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 262 TQAGQLRAEHSSLLKGLTDVN-------QKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~-------qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
..|..|+.+...+..++..|. .++..+..+=..|+++|..+|+||
T Consensus 286 ~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 286 QLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 334444455445555544442 355666666777777777777764
No 443
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.75 E-value=3.3e+02 Score=31.41 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.+...+..+++|+.+....-.+...|...+.+..-+...+..+|-.|+.++..|
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444433
No 444
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.55 E-value=1.8e+02 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.....+..+.+.+..+..+-..|+.++..|+..
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777777777777777766654
No 445
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.53 E-value=2.2e+02 Score=29.86 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLL--------KGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~--------~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
-++-+++|..++.+|+...-.+. .+..+|.+....|..+|+.|+.+=+.|.
T Consensus 372 tqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneeln 430 (502)
T KOG0982|consen 372 TQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELN 430 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 34566777777777765554443 3445555555555555555555544443
No 446
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.46 E-value=3.4e+02 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 274 LLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
|..++..+......+..+...-..+...|+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 447
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=35.36 E-value=72 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
.|..+..+|+.||+-|+-+++.|-
T Consensus 76 rlkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666655443
No 448
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.30 E-value=1.5e+02 Score=33.78 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVN---------------QKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~---------------qk~~~l~~ENr~Lraql~~Lra 304 (306)
++.+-|..+|..|+..+.+|...|+.|+ -++..|+.+|.+||.-+-.||.
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
No 449
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=35.29 E-value=2.5e+02 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
-+.++.++.+++.+|+.+.+.|+.+|++|..++
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 457788888888899999999999999998764
No 450
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=35.27 E-value=18 Score=19.42 Aligned_cols=7 Identities=29% Similarity=0.743 Sum_probs=5.4
Q ss_pred CCCCCCC
Q 021874 12 DSFLSSP 18 (306)
Q Consensus 12 ~~fW~~p 18 (306)
.|||.+|
T Consensus 2 kpfw~pp 8 (12)
T PF08248_consen 2 KPFWPPP 8 (12)
T ss_pred CccCCCC
Confidence 4899876
No 451
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.17 E-value=1.9e+02 Score=24.97 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=3.9
Q ss_pred HHHHHHHHhH
Q 021874 234 KRARRMLSNR 243 (306)
Q Consensus 234 KR~RR~lsNR 243 (306)
...||-+..|
T Consensus 60 ~~tKkhLsqR 69 (126)
T PF07889_consen 60 SSTKKHLSQR 69 (126)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 452
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=35.16 E-value=1.6e+02 Score=30.70 Aligned_cols=51 Identities=25% Similarity=0.259 Sum_probs=31.6
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELE----------TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 254 k~~l~eLE----------~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
++|+++|+ .+..+-.-||..|.+.++.-++-+..-..||..|.+.-+.|..
T Consensus 417 rQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnn 477 (593)
T KOG4807|consen 417 RQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNN 477 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 46666665 4455555678888877776666666666666666554444443
No 453
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.14 E-value=4.4e+02 Score=25.74 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L 295 (306)
+.+++.++.+.....+++.++++++......-..|
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444333333333
No 454
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.12 E-value=3.2e+02 Score=27.71 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
|+..++.|+.+-..|.+.+..|+
T Consensus 251 L~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 251 LVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 33333334444444433333333
No 455
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.12 E-value=1e+02 Score=25.51 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
.+.+|+.++.+|+.||.-|++.+..
T Consensus 79 ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 79 QIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555443
No 456
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=34.97 E-value=1e+02 Score=30.00 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
..|..|+++.+....-+.+.-.-..|..||+++..++.++.....+|..++.+.
T Consensus 142 p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 142 PSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Confidence 356666677776653333322234789999999999999988888888877653
No 457
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=34.94 E-value=1.2e+02 Score=27.51 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
++..+.|+.++..|+.++..+......|.....
T Consensus 117 ~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ 149 (170)
T PRK13923 117 QEEEEKLSWENQTLKQELAITEEDYRALIVIMN 149 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666555555554443
No 458
>PF14282 FlxA: FlxA-like protein
Probab=34.90 E-value=1.2e+02 Score=24.96 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 021874 260 LETQAGQLR 268 (306)
Q Consensus 260 LE~qV~~Le 268 (306)
|..++..|.
T Consensus 31 Lq~ql~~l~ 39 (106)
T PF14282_consen 31 LQEQLQELS 39 (106)
T ss_pred HHHHHHHHH
Confidence 333333333
No 459
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.89 E-value=2.1e+02 Score=31.32 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.|.+|+.+.+.|+..-..|..+++++.++...|.
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555444444443
No 460
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.75 E-value=2.5e+02 Score=22.74 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV---NQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L---~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+.+-.-+| |+.++.+.-.=+ .-+.+|+..++.|...+..|...+..+ ..+...|+.-=..|-.-...|..|+
T Consensus 22 d~~LLe~m--N~~~~~kY~~~~-~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 22 DYNLLENM--NKATSLKYKKMK-DIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 444544443222 334666666666666666555444433 3367777666666766666666654
No 461
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=34.74 E-value=1.1e+02 Score=23.77 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLK 276 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~ 276 (306)
..++..|-.||..|+.
T Consensus 5 ~~~l~~LL~EN~~LKe 20 (68)
T PF11577_consen 5 QQQLQELLQENQDLKE 20 (68)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3455555556655543
No 462
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=34.73 E-value=98 Score=28.92 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
....+|..||..|++++..|+.+...+ +.|+++.+.||.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~ 107 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 445567777777777776655444433 466777777765
No 463
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.59 E-value=1.4e+02 Score=31.66 Aligned_cols=39 Identities=10% Similarity=0.225 Sum_probs=21.6
Q ss_pred HHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSN---RESARRSRRRKQAHLNELETQAGQLRAE 270 (306)
Q Consensus 232 e~KR~RR~lsN---RESArRSR~RKk~~l~eLE~qV~~Le~E 270 (306)
..++.++.++- +-.++....-+++.+++++++|+.|+..
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 34444443333 3333333343456788888888888764
No 464
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=34.25 E-value=3e+02 Score=24.16 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.+|..+......+..+.......+..|..+|..+..+-..|....+.|
T Consensus 7 ~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~L 54 (157)
T PF04136_consen 7 DYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQL 54 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445555556666666666666666666666666666666666555544
No 465
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=34.24 E-value=3.9e+02 Score=31.41 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhC
Q 021874 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL---KADIETLRAKM 306 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~L---raql~~Lrakv 306 (306)
+.-..+++..--+--|+-+.=-+..+.+.+.++..++.+...|..++.++..++..+...|..+ ..++..||.+|
T Consensus 471 ~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~l 548 (1317)
T KOG0612|consen 471 EETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQL 548 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 466
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=34.21 E-value=3.6e+02 Score=27.16 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=14.5
Q ss_pred CCCChHHHHH---HHHhhhhhhHHHHHHh
Q 021874 107 APVDSDEYRA---YLKTKLDLACAAVALR 132 (306)
Q Consensus 107 ~~~dp~~y~a---~Lk~kL~~~~AAva~~ 132 (306)
...|+..|++ .|+.+|...-+-.+.-
T Consensus 88 ~~ld~~~~~~~~~~~~~~~~~~~~~~~rL 116 (457)
T TIGR01000 88 VVYDNGNEENQKQLLEQQLDNLKDQKKSL 116 (457)
T ss_pred EEECchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777774 4555555555544443
No 467
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=33.90 E-value=1.4e+02 Score=30.22 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRA 269 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~ 269 (306)
+..++|..+|..|+.
T Consensus 46 kEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 46 KENNDLKIEVERLEN 60 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666633
No 468
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=33.88 E-value=2.5e+02 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
++++|+.--+.++.++++|..++.
T Consensus 146 EaeQLQsLR~avRqElqELE~QL~ 169 (179)
T PF14723_consen 146 EAEQLQSLRSAVRQELQELEFQLE 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666665555443
No 469
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.86 E-value=1e+02 Score=29.77 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLK 276 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~ 276 (306)
+.+|+.|+..|+.+..+|..
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~ 77 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG 77 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh
Confidence 45555566555555555554
No 470
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=33.82 E-value=2.2e+02 Score=27.13 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 243 RESARRSRRRKQAHL----NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 243 RESArRSR~RKk~~l----~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
-+|+-..-+||.-+. ..++.++..|+.++..|..++.++..++...+.-|..+++
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ 227 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE 227 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 356667777776444 4577888888889988888888888888776666655543
No 471
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.81 E-value=1.4e+02 Score=30.16 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhC
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK----YDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk----~~~l~~ENr~Lraql~~Lrakv 306 (306)
+...+|..+++.|+.+-+.+.+++..+... ...+..+-+.|+.++..|.+++
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 92 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAAL 92 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
No 472
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.68 E-value=4.1e+02 Score=30.61 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHh
Q 021874 112 DEYRAYLKTKLDLACAAVALR 132 (306)
Q Consensus 112 ~~y~a~Lk~kL~~~~AAva~~ 132 (306)
+.|+=+-|...-.-.||.-|-
T Consensus 240 ei~klLekGs~kRrtAaTl~N 260 (1041)
T KOG0243|consen 240 EIYKLLEKGSKKRRTAATLMN 260 (1041)
T ss_pred HHHHHHHhhhhHhHHHHHHhh
Confidence 456655555555556666543
No 473
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.61 E-value=2.1e+02 Score=21.69 Aligned_cols=48 Identities=6% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.++++++..++..-..+..++..|.+.....+.+=..+..++..|..
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.31 E-value=2.6e+02 Score=28.17 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAG---------------QLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~---------------~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
..+..........++.-+...++.+..|+.++. .|+.+...|..++..+..+|..---.=..|+.
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~ 282 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKR 282 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q ss_pred HHHHHHHhC
Q 021874 298 DIETLRAKM 306 (306)
Q Consensus 298 ql~~Lrakv 306 (306)
+++.|+..+
T Consensus 283 qi~~l~~~l 291 (498)
T TIGR03007 283 EIAQLEEQK 291 (498)
T ss_pred HHHHHHHHH
No 475
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=33.25 E-value=1.5e+02 Score=26.04 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 257 LNELETQAGQLR-AEHSSLLKGLTDV--------NQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 257 l~eLE~qV~~Le-~EN~~L~~~l~~L--------~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
++.|+.+++.|+ .+...+..++... +..|+....+-..|..+|..|+.+|
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L 68 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRL 68 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
No 476
>PRK14011 prefoldin subunit alpha; Provisional
Probab=33.09 E-value=2.3e+02 Score=24.84 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++.|+.+++.|+..-..|...+..+++....+..+ |++.++.+..+
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~---L~~k~~~~~~~ 135 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE---LEKRAQAIEQR 135 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 477
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.02 E-value=2.5e+02 Score=22.38 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 229 d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~---EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+..+.-+...+-..|..++..-..-++....+..++..+.. +...|..+...+..++..+..+-..+..++..+--.
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLS 103 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred C
Q 021874 306 M 306 (306)
Q Consensus 306 v 306 (306)
|
T Consensus 104 i 104 (108)
T PF02403_consen 104 I 104 (108)
T ss_dssp S
T ss_pred C
No 478
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=32.74 E-value=4e+02 Score=31.30 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+.-.+| +.+.-++.+-....+.+.+++.+...|+.++..|..++..++++...+...++.+-+...+|.+
T Consensus 479 ~~~~el~~--~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 479 SEESELQR--EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEE 550 (1317)
T ss_pred HHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 479
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.74 E-value=2.5e+02 Score=30.93 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|.+......-.+++.-+..|+.+...+..+...+.+....++...+.|+.+.+.|..+
T Consensus 505 ~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF13166 AAA_13: AAA domain
Probab=32.58 E-value=4.9e+02 Score=27.39 Aligned_cols=71 Identities=11% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+........+..++ ..-+..++..+...+..+..+...+...+..+..+...+..+-..++.++..|++++
T Consensus 384 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 454 (712)
T PF13166_consen 384 EKIDNLKKEQNELK--DKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL 454 (712)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=32.57 E-value=2.2e+02 Score=21.44 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
..++..-..-...|+.=|..|..+...+++. ..|..+|..|+.-+..
T Consensus 12 ~~~~~~W~~L~~~l~rY~~vL~~R~~l~~e~-~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 12 DEKIRLWDALENFLKRYNKVLLDRAALIQEK-ESLEQQNEELRSLLKQ 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
No 482
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=32.48 E-value=2.9e+02 Score=23.88 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.+..||.+...|..+-.....+.....+....-..+...++..++..-.|+
T Consensus 28 ~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl 78 (126)
T PF09403_consen 28 ELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKL 78 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 483
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=32.39 E-value=1e+02 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
.++..|..+..+|+.||+-|+-+++.|---+....+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 484
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.37 E-value=4.8e+02 Score=27.62 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHH-------------------HHHHHHHHHHH-----------------HHHHHHHHHHHH--
Q 021874 232 DDKRARRMLSNRESARRSR-------------------RRKQAHLNELE-----------------TQAGQLRAEHSS-- 273 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR-------------------~RKk~~l~eLE-----------------~qV~~Le~EN~~-- 273 (306)
++.|.=++..|+++++.-| ++--+++..|. .+|..|+.+.-.
T Consensus 410 ~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~ 489 (521)
T KOG1937|consen 410 EETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEE 489 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 274 ---LLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 274 ---L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
....++.|.+.|+.+..+|..|..+|.
T Consensus 490 ~k~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 490 QKQYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
No 485
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=32.35 E-value=1.9e+02 Score=30.51 Aligned_cols=54 Identities=26% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 253 KQAHLNELETQAGQLRAEHSSLL----KGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~----~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
||..+++|..||..|..-...|+ ++|..|...+.+-..--..|..+|+.|..-|
T Consensus 567 ~k~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~ 624 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAV 624 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHh
No 486
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.32 E-value=2.6e+02 Score=27.15 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.-+..+..++.+++.....|...-..|..++.....|=...++++.+|+.
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=32.31 E-value=4e+02 Score=30.87 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+-.+-.+.||+--..--+++-..++++-.+.-.|+.++..|..++.+|.+++..+...+..|+-.-..|.
T Consensus 373 ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~ 442 (1195)
T KOG4643|consen 373 RALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQ 442 (1195)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=32.28 E-value=2.9e+02 Score=28.80 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+.++..=.+.+..+..|...|..|+.+....+..+..++++.......-..|..++..++.+|
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
No 489
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=32.27 E-value=2.9e+02 Score=30.82 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL-TDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l-~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
..|+.+-.+....---+-+..+.+||.+...++.-|..++.-+ ..-.-+...+..+...|-++|..||.+|
T Consensus 525 I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 525 IEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTL 596 (961)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
No 490
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=32.27 E-value=2.5e+02 Score=27.34 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++..|..||-.|+.+-.....-..+|+...++...--..|+.++++|+.|
T Consensus 17 ~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk 66 (277)
T PF15030_consen 17 RVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKK 66 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.19 E-value=4.7e+02 Score=28.04 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK---------------GLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~---------------~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
..+....++.+++...=-..++.+|+.++...+.+.+..+. ++..+++++..+..+=...++++.
T Consensus 182 ~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 182 AGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhC
Q 021874 301 TLRAKM 306 (306)
Q Consensus 301 ~Lrakv 306 (306)
.|+..+
T Consensus 262 ~l~~~l 267 (754)
T TIGR01005 262 SVKKAL 267 (754)
T ss_pred HHHHHH
No 492
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=32.17 E-value=3e+02 Score=24.13 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
...++.....+......+..+..+|..|......-...-..|+.++....+++
T Consensus 25 ~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l 77 (135)
T TIGR03495 25 RADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALL 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.98 E-value=4e+02 Score=24.33 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.|.-+.-+.....-..+=+..+..+...|..|+.....|..++..++.+...|...-+..+++..
T Consensus 87 Ar~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 87 ARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PHA02047 phage lambda Rz1-like protein
Probab=31.93 E-value=2.8e+02 Score=23.37 Aligned_cols=45 Identities=7% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
.+..+.|+.+++.++.....+.+.+..|+++ .+..-+.++..++.
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k---ae~~t~Ei~~aL~~ 77 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEAR---TNTQRQEVDRALDQ 77 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
No 495
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=31.92 E-value=80 Score=31.56 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 021874 233 DKRARRMLSNRESARRSRRRK-----------------------------QAHLNELETQAGQLRAEHSSLLKGLTDVN- 282 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RK-----------------------------k~~l~eLE~qV~~Le~EN~~L~~~l~~L~- 282 (306)
+||.||-|.| |--|-|+.- .+|+-+||.+.-+|-.+|.+|++.+.++.
T Consensus 56 erRmRReIAN--sNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~~~ 133 (373)
T KOG0561|consen 56 ERRMRREIAN--SNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLEEDH 133 (373)
T ss_pred HHHHHHHhhc--chHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhhhcc
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHH
Q 021874 283 -----------------------QKYDESAVNNRILKADIET 301 (306)
Q Consensus 283 -----------------------qk~~~l~~ENr~Lraql~~ 301 (306)
++......+|..|.++..+
T Consensus 134 ~~~~~~~~~~~~~gi~st~~a~~k~~e~~~i~~iel~q~~~~ 175 (373)
T KOG0561|consen 134 HDADHQAQIAHLQGILSTERAARKALESQVIQLIELLQMTTT 175 (373)
T ss_pred CCcccchhhhhhccCCcHHHHHHHhhhhHHHHHHHHHHhhcc
No 496
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=31.78 E-value=2.6e+02 Score=25.23 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNE-LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~e-LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
+..+++|+.|.-++-==.|-+.+++. +..+-..-..++..|.+--.+|...-.....-|..|+.+|-.|
T Consensus 110 ~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l 179 (216)
T cd07599 110 KKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKL 179 (216)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 497
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.73 E-value=4.5e+02 Score=24.84 Aligned_cols=74 Identities=20% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRK--QAHLNELETQAGQLRAEHSSLLKGLTDVN-------------------QKYDESAVN 291 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RK--k~~l~eLE~qV~~Le~EN~~L~~~l~~L~-------------------qk~~~l~~E 291 (306)
.++..++..++..+......+ ...+..+..++..|+.++..+..++..+. ..+.....+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~ 190 (301)
T PF14362_consen 111 DQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQ 190 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhC
Q 021874 292 NRILKADIETLRAKM 306 (306)
Q Consensus 292 Nr~Lraql~~Lrakv 306 (306)
-..+++++..|++++
T Consensus 191 ~~~~~~~l~~l~~~~ 205 (301)
T PF14362_consen 191 LDAAQAELDTLQAQI 205 (301)
T ss_pred HHHHHHHHHHHHHhH
No 498
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=31.70 E-value=69 Score=29.68 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+.+|......|+.+|..|..+|..|+.++..|++-+
T Consensus 107 ~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~ 142 (198)
T KOG0483|consen 107 TKQLEKDYESLKRQLESLRSENDRLQSEVQELVAEL 142 (198)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
No 499
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.67 E-value=5.3e+02 Score=29.74 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.|+++|--.--+-|+.-..|-+..|.++..-++.+.-+..--..+...|+..+..+...|..|..+++-|++
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKa 353 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKA 353 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=31.65 E-value=1.1e+02 Score=34.53 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+..+|..|| ...|+.|..+|..++..|+.-+..-..-+..++.++.++..|
T Consensus 439 rL~~Lt~le--~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~k 489 (957)
T PRK13979 439 MLYRLTGLE--IVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEK 489 (957)
T ss_pred cHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Done!