Query 021874
Match_columns 306
No_of_seqs 189 out of 766
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:35:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 7.9E-15 2.7E-19 107.2 6.5 53 234-286 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.3 7.9E-12 2.7E-16 93.1 9.1 57 233-289 1-57 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 2.4E-11 8.2E-16 89.8 8.9 59 234-299 1-59 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 1.8E-11 6.2E-16 91.6 6.8 50 237-286 12-61 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 6.7E-11 2.3E-15 87.7 7.5 51 234-284 1-51 (62)
6 1gd2_E Transcription factor PA 99.0 8.7E-10 3E-14 84.3 8.2 61 236-296 10-70 (70)
7 1ci6_A Transcription factor AT 98.9 2.7E-09 9.3E-14 79.6 7.4 60 234-300 2-61 (63)
8 1gu4_A CAAT/enhancer binding p 98.6 3.5E-07 1.2E-11 71.2 9.6 56 233-288 14-69 (78)
9 1hjb_A Ccaat/enhancer binding 98.6 3.8E-07 1.3E-11 72.3 9.8 56 233-288 14-69 (87)
10 3a5t_A Transcription factor MA 98.5 6.4E-09 2.2E-13 85.4 -2.7 46 231-276 34-79 (107)
11 2wt7_B Transcription factor MA 98.3 5.7E-06 2E-10 66.0 9.9 65 231-302 24-88 (90)
12 2oqq_A Transcription factor HY 97.3 0.00054 1.9E-08 47.4 6.1 40 254-300 2-41 (42)
13 1deb_A APC protein, adenomatou 96.2 0.028 9.6E-07 40.5 8.2 50 257-306 5-54 (54)
14 1skn_P DNA-binding domain of S 96.0 0.003 1E-07 50.4 2.6 32 231-262 59-90 (92)
15 2jee_A YIIU; FTSZ, septum, coi 95.2 0.089 3E-06 41.1 8.0 50 257-306 22-71 (81)
16 2w6a_A ARF GTPase-activating p 94.8 0.12 4.1E-06 38.4 7.4 41 257-297 22-62 (63)
17 3hnw_A Uncharacterized protein 94.4 0.17 5.7E-06 42.7 8.5 50 255-304 75-124 (138)
18 2jee_A YIIU; FTSZ, septum, coi 94.0 0.27 9.4E-06 38.4 8.2 49 255-303 6-54 (81)
19 3s9g_A Protein hexim1; cyclin 93.3 0.44 1.5E-05 38.6 8.6 46 258-303 40-92 (104)
20 1go4_E MAD1 (mitotic arrest de 92.6 0.5 1.7E-05 38.2 8.0 51 256-306 13-91 (100)
21 3oja_B Anopheles plasmodium-re 91.7 1.9 6.4E-05 42.2 12.6 51 256-306 531-581 (597)
22 3m48_A General control protein 91.7 0.19 6.6E-06 33.1 3.7 27 257-283 2-28 (33)
23 1kd8_B GABH BLL, GCN4 acid bas 91.6 0.32 1.1E-05 32.6 4.7 31 256-286 2-32 (36)
24 2oxj_A Hybrid alpha/beta pepti 91.4 0.26 8.7E-06 32.6 4.1 28 256-283 2-29 (34)
25 3hnw_A Uncharacterized protein 91.2 1.4 4.7E-05 37.1 9.6 50 255-304 82-131 (138)
26 3he5_A Synzip1; heterodimeric 90.2 1.2 4.2E-05 30.9 6.8 44 256-299 4-47 (49)
27 1p9i_A Cortexillin I/GCN4 hybr 90.2 0.23 8E-06 31.6 2.9 26 281-306 4-29 (31)
28 2c9l_Y EB1, zebra, BZLF1 trans 90.1 1.7 5.7E-05 31.8 7.8 38 238-275 5-42 (63)
29 2dfs_A Myosin-5A; myosin-V, in 89.8 1.9 6.6E-05 46.8 11.6 25 280-304 1020-1044(1080)
30 2eqb_B RAB guanine nucleotide 89.7 1.6 5.4E-05 35.1 8.2 24 278-301 71-94 (97)
31 4etp_A Kinesin-like protein KA 89.7 0.9 3.1E-05 44.1 8.1 54 253-306 8-61 (403)
32 1kd8_A GABH AIV, GCN4 acid bas 89.6 0.43 1.5E-05 31.9 4.0 31 256-286 2-32 (36)
33 3a7p_A Autophagy protein 16; c 89.5 6.7 0.00023 33.8 12.5 66 234-299 68-133 (152)
34 3c3f_A Alpha/beta peptide with 89.4 0.48 1.7E-05 31.3 4.1 28 256-283 2-29 (34)
35 3vmx_A Voltage-gated hydrogen 88.8 1.9 6.4E-05 30.6 7.1 40 261-300 3-42 (48)
36 3mq7_A Bone marrow stromal ant 88.5 2.4 8.2E-05 35.2 8.6 37 263-299 72-108 (121)
37 3swy_A Cyclic nucleotide-gated 88.4 2.6 8.9E-05 29.5 7.5 45 259-306 2-46 (46)
38 3a2a_A Voltage-gated hydrogen 88.2 1.4 4.7E-05 32.3 6.1 41 260-300 9-49 (58)
39 3c3g_A Alpha/beta peptide with 88.1 0.67 2.3E-05 30.5 4.1 27 257-283 2-28 (33)
40 1uo4_A General control protein 87.9 0.64 2.2E-05 30.8 3.9 28 256-283 2-29 (34)
41 2bni_A General control protein 87.8 0.66 2.3E-05 30.7 3.9 28 256-283 2-29 (34)
42 1gd2_E Transcription factor PA 87.6 0.75 2.6E-05 34.8 4.7 26 280-305 40-65 (70)
43 2kz5_A Transcription factor NF 87.6 0.045 1.6E-06 43.5 -2.1 25 231-255 63-87 (91)
44 2hy6_A General control protein 87.4 0.85 2.9E-05 30.2 4.2 29 256-284 2-30 (34)
45 3bas_A Myosin heavy chain, str 87.4 8.5 0.00029 29.7 11.9 52 255-306 35-86 (89)
46 3m91_A Proteasome-associated A 87.3 2.7 9.3E-05 30.0 7.2 38 258-302 12-49 (51)
47 3cve_A Homer protein homolog 1 87.1 2.7 9.2E-05 32.0 7.6 39 260-298 5-43 (72)
48 3u06_A Protein claret segregat 87.0 1.4 4.9E-05 42.9 7.6 52 255-306 10-61 (412)
49 2dgc_A Protein (GCN4); basic d 86.8 1.1 3.7E-05 33.0 5.1 31 276-306 30-60 (63)
50 3efg_A Protein SLYX homolog; x 86.7 1.8 6E-05 33.2 6.5 49 255-303 14-62 (78)
51 2wq1_A General control protein 86.6 0.93 3.2E-05 29.8 4.1 27 257-283 2-28 (33)
52 3efg_A Protein SLYX homolog; x 86.5 3.1 0.00011 31.8 7.7 49 258-306 10-58 (78)
53 1t2k_D Cyclic-AMP-dependent tr 86.5 4.8 0.00016 28.9 8.4 25 279-303 25-49 (61)
54 1dh3_A Transcription factor CR 85.9 1.3 4.5E-05 31.7 5.0 31 276-306 22-52 (55)
55 2yy0_A C-MYC-binding protein; 85.8 1.3 4.6E-05 31.6 5.0 32 262-300 19-50 (53)
56 2v66_B Nuclear distribution pr 85.2 13 0.00045 30.3 11.3 49 257-305 37-85 (111)
57 3cvf_A Homer-3, homer protein 85.2 1.8 6.1E-05 33.6 5.8 48 255-302 27-74 (79)
58 2w83_C C-JUN-amino-terminal ki 85.1 5.1 0.00017 31.0 8.2 45 259-303 6-57 (77)
59 1ci6_A Transcription factor AT 84.9 2.5 8.6E-05 30.9 6.3 21 259-279 34-54 (63)
60 1nkp_B MAX protein, MYC proto- 84.9 1.1 3.9E-05 33.9 4.6 18 285-302 63-80 (83)
61 2v71_A Nuclear distribution pr 84.6 12 0.00042 33.1 11.7 49 257-305 90-138 (189)
62 3o0z_A RHO-associated protein 84.4 10 0.00034 33.1 10.9 63 234-303 69-131 (168)
63 3mq7_A Bone marrow stromal ant 83.9 4 0.00014 33.9 7.7 48 258-305 60-107 (121)
64 1wt6_A Myotonin-protein kinase 83.7 13 0.00045 28.9 10.1 60 242-304 14-73 (81)
65 3m9b_A Proteasome-associated A 83.5 1.3 4.5E-05 41.0 5.1 43 254-296 53-95 (251)
66 3s4r_A Vimentin; alpha-helix, 83.1 5.3 0.00018 31.3 7.8 38 269-306 56-93 (93)
67 3he5_A Synzip1; heterodimeric 83.0 4.6 0.00016 28.0 6.5 44 263-306 4-47 (49)
68 2dfs_A Myosin-5A; myosin-V, in 82.9 8.6 0.00029 41.8 12.0 34 255-288 1016-1049(1080)
69 2yy0_A C-MYC-binding protein; 82.9 2.3 7.8E-05 30.4 5.2 18 263-280 27-44 (53)
70 2ve7_C Kinetochore protein NUF 82.9 0.8 2.7E-05 41.9 3.5 73 232-304 118-197 (250)
71 3i00_A HIP-I, huntingtin-inter 82.9 9.4 0.00032 31.4 9.6 48 251-305 36-83 (120)
72 2v71_A Nuclear distribution pr 82.7 5.3 0.00018 35.4 8.6 37 262-298 88-124 (189)
73 3s9g_A Protein hexim1; cyclin 82.6 6.1 0.00021 31.9 8.1 31 254-284 64-94 (104)
74 3u1c_A Tropomyosin alpha-1 cha 82.5 16 0.00055 28.8 11.3 19 255-273 44-62 (101)
75 3a7o_A Autophagy protein 16; c 82.2 5.7 0.0002 30.3 7.3 50 255-304 25-74 (75)
76 2oa5_A Hypothetical protein BQ 82.0 3.1 0.0001 34.2 6.2 25 255-279 8-32 (110)
77 1t6f_A Geminin; coiled-coil, c 81.9 2.8 9.4E-05 28.1 4.8 29 268-296 6-34 (37)
78 2xdj_A Uncharacterized protein 81.5 5.2 0.00018 31.0 7.2 44 257-300 22-65 (83)
79 3swf_A CGMP-gated cation chann 81.0 3.8 0.00013 31.4 6.0 45 258-305 3-47 (74)
80 3oja_B Anopheles plasmodium-re 80.9 5.8 0.0002 38.7 9.0 24 263-286 517-540 (597)
81 1gu4_A CAAT/enhancer binding p 80.7 8.5 0.00029 29.5 8.0 54 233-286 18-74 (78)
82 1nlw_A MAD protein, MAX dimeri 80.6 3.2 0.00011 31.7 5.6 32 254-285 46-77 (80)
83 3iv1_A Tumor susceptibility ge 80.0 17 0.00058 28.0 9.5 51 255-305 18-68 (78)
84 2wt7_B Transcription factor MA 80.0 14 0.00049 29.1 9.3 56 247-305 29-84 (90)
85 1uii_A Geminin; human, DNA rep 79.2 13 0.00043 29.1 8.6 35 268-302 45-79 (83)
86 3o0z_A RHO-associated protein 79.2 11 0.00036 33.0 9.1 51 248-300 29-79 (168)
87 2r2v_A GCN4 leucine zipper; co 79.2 3.2 0.00011 27.4 4.4 28 256-283 2-29 (34)
88 3m9b_A Proteasome-associated A 79.2 2.1 7E-05 39.7 4.8 44 261-304 53-96 (251)
89 1fmh_A General control protein 78.8 4.1 0.00014 26.2 4.7 28 257-284 3-30 (33)
90 1ic2_A Tropomyosin alpha chain 78.7 11 0.00039 28.3 8.2 49 256-304 21-69 (81)
91 1jnm_A Proto-oncogene C-JUN; B 78.3 7.2 0.00025 28.0 6.6 28 266-293 26-53 (62)
92 2wt7_A Proto-oncogene protein 78.2 17 0.00057 26.3 9.5 24 280-303 27-50 (63)
93 2v66_B Nuclear distribution pr 78.0 17 0.00059 29.6 9.5 56 245-300 46-101 (111)
94 2zxx_A Geminin; coiled-coil, c 77.7 7.9 0.00027 30.0 7.0 36 268-303 33-68 (79)
95 1hjb_A Ccaat/enhancer binding 77.7 15 0.0005 28.7 8.7 57 233-289 18-77 (87)
96 2oxj_A Hybrid alpha/beta pepti 77.6 3.2 0.00011 27.4 4.0 27 278-304 3-29 (34)
97 1x8y_A Lamin A/C; structural p 77.6 20 0.00069 27.4 9.4 52 253-304 26-77 (86)
98 3q8t_A Beclin-1; autophagy, AT 77.4 24 0.00082 27.7 12.0 70 236-305 27-96 (96)
99 3u1c_A Tropomyosin alpha-1 cha 77.1 12 0.00041 29.5 8.2 19 260-278 35-53 (101)
100 1a93_B MAX protein, coiled coi 76.9 3.8 0.00013 27.1 4.2 27 276-302 7-33 (34)
101 2wuj_A Septum site-determining 76.6 2.2 7.4E-05 30.7 3.4 26 256-281 28-53 (57)
102 4h22_A Leucine-rich repeat fli 76.5 12 0.00042 30.2 8.1 70 232-304 8-79 (103)
103 1joc_A EEA1, early endosomal a 76.1 17 0.0006 29.5 9.2 47 255-301 11-57 (125)
104 3m91_A Proteasome-associated A 76.1 12 0.00041 26.6 7.1 26 279-304 19-44 (51)
105 2xdj_A Uncharacterized protein 76.1 24 0.00083 27.2 9.4 44 248-291 20-63 (83)
106 2fxo_A Myosin heavy chain, car 76.0 20 0.00069 29.2 9.6 21 282-302 103-123 (129)
107 4h22_A Leucine-rich repeat fli 75.9 12 0.00041 30.3 7.8 47 255-301 37-83 (103)
108 1gk6_A Vimentin; intermediate 75.4 10 0.00034 27.3 6.7 47 258-304 3-49 (59)
109 3nmd_A CGMP dependent protein 75.4 12 0.0004 28.6 7.2 28 252-279 37-64 (72)
110 1nkp_A C-MYC, MYC proto-oncoge 75.2 8.1 0.00028 29.8 6.5 26 278-303 61-86 (88)
111 1dip_A Delta-sleep-inducing pe 74.9 3.1 0.00011 32.0 4.0 24 274-297 20-43 (78)
112 3htk_A Structural maintenance 74.6 16 0.00055 25.6 7.5 49 253-301 10-58 (60)
113 3m48_A General control protein 74.0 4.2 0.00014 26.7 3.8 26 279-304 3-28 (33)
114 3oja_A Leucine-rich immune mol 73.8 29 0.00099 33.1 11.5 38 249-286 429-466 (487)
115 3u59_A Tropomyosin beta chain; 73.7 30 0.001 27.0 11.3 15 288-302 84-98 (101)
116 2wuj_A Septum site-determining 73.2 3.5 0.00012 29.6 3.7 29 278-306 29-57 (57)
117 2wvr_A Geminin; DNA replicatio 73.1 12 0.00041 33.7 7.9 34 269-302 115-148 (209)
118 2v4h_A NF-kappa-B essential mo 73.0 37 0.0013 27.7 10.6 62 243-304 33-104 (110)
119 1dip_A Delta-sleep-inducing pe 72.6 2.2 7.6E-05 32.8 2.7 22 255-276 22-43 (78)
120 3jsv_C NF-kappa-B essential mo 72.5 26 0.00088 27.9 8.9 55 240-294 8-65 (94)
121 1am9_A Srebp-1A, protein (ster 72.3 5.8 0.0002 30.1 5.0 22 280-301 54-75 (82)
122 2j5u_A MREC protein; bacterial 71.9 1.9 6.3E-05 39.3 2.5 37 259-299 23-59 (255)
123 2lw1_A ABC transporter ATP-bin 71.9 15 0.00052 28.0 7.4 50 254-303 21-76 (89)
124 2xv5_A Lamin-A/C; structural p 71.4 30 0.001 26.1 8.7 47 258-304 8-54 (74)
125 3m0d_C TNF receptor-associated 71.3 27 0.00092 25.4 8.4 51 255-305 6-56 (65)
126 3plt_A Sphingolipid long chain 71.1 16 0.00056 33.3 8.5 68 232-304 91-159 (234)
127 3oja_A Leucine-rich immune mol 70.9 36 0.0012 32.5 11.4 59 241-299 428-486 (487)
128 2w83_C C-JUN-amino-terminal ki 70.8 7.5 0.00026 30.0 5.3 43 258-300 33-75 (77)
129 3na7_A HP0958; flagellar bioge 70.5 55 0.0019 29.2 11.9 12 260-271 95-106 (256)
130 1gk7_A Vimentin; intermediate 69.3 6.8 0.00023 26.3 4.2 30 272-301 9-38 (39)
131 3na7_A HP0958; flagellar bioge 69.3 17 0.00057 32.6 8.2 44 257-300 34-77 (256)
132 1nkp_B MAX protein, MYC proto- 68.8 16 0.00055 27.4 6.8 34 254-287 46-79 (83)
133 2ocy_A RAB guanine nucleotide 68.6 14 0.00049 31.7 7.2 48 257-304 46-93 (154)
134 1nkp_A C-MYC, MYC proto-oncoge 68.4 22 0.00076 27.3 7.6 35 254-288 51-85 (88)
135 1p9i_A Cortexillin I/GCN4 hybr 68.1 7.4 0.00025 24.7 3.9 27 258-284 2-28 (31)
136 1fmh_B General control protein 68.1 7.8 0.00027 24.9 4.0 27 279-305 4-30 (33)
137 1kd8_B GABH BLL, GCN4 acid bas 67.7 5.7 0.00019 26.5 3.4 24 281-304 6-29 (36)
138 3q8t_A Beclin-1; autophagy, AT 67.5 29 0.00099 27.2 8.2 48 254-301 38-85 (96)
139 1wlq_A Geminin; coiled-coil; 2 67.1 31 0.001 26.9 8.1 31 269-299 38-68 (83)
140 3cvf_A Homer-3, homer protein 66.7 37 0.0013 26.1 8.4 45 258-302 9-53 (79)
141 3ra3_A P1C; coiled coil domain 66.5 3.9 0.00013 25.4 2.3 24 265-288 3-26 (28)
142 1go4_E MAD1 (mitotic arrest de 65.0 8 0.00027 31.1 4.6 29 277-305 13-41 (100)
143 3c3f_A Alpha/beta peptide with 64.1 9.8 0.00034 25.1 4.0 26 279-304 4-29 (34)
144 3c3g_A Alpha/beta peptide with 63.3 10 0.00036 24.8 4.0 26 279-304 3-28 (33)
145 3mq9_A Bone marrow stromal ant 62.8 53 0.0018 31.1 10.7 23 282-304 442-464 (471)
146 1wt6_A Myotonin-protein kinase 62.6 39 0.0013 26.2 7.9 34 255-288 38-71 (81)
147 2oqq_A Transcription factor HY 61.9 21 0.00072 24.6 5.5 24 255-278 17-40 (42)
148 3htk_A Structural maintenance 61.4 38 0.0013 23.6 8.2 48 257-304 7-54 (60)
149 2oto_A M protein; helical coil 61.1 44 0.0015 27.7 8.8 31 258-288 53-83 (155)
150 4emc_A Monopolin complex subun 60.4 16 0.00054 32.5 6.0 17 263-279 21-37 (190)
151 1jcd_A Major outer membrane li 60.2 43 0.0015 23.8 7.7 38 256-293 5-42 (52)
152 3ghg_A Fibrinogen alpha chain; 59.9 34 0.0012 34.9 9.0 33 273-305 114-146 (562)
153 1fmh_A General control protein 58.7 14 0.00046 23.8 3.9 27 278-304 3-29 (33)
154 3tnu_B Keratin, type II cytosk 58.3 57 0.0019 26.3 8.7 49 256-304 76-124 (129)
155 3mq9_A Bone marrow stromal ant 57.9 63 0.0021 30.6 10.3 35 270-304 437-471 (471)
156 3bas_A Myosin heavy chain, str 57.8 57 0.0019 25.0 8.2 47 258-304 31-77 (89)
157 2e7s_A RAB guanine nucleotide 57.2 25 0.00087 29.6 6.5 50 256-305 33-82 (135)
158 3tnu_A Keratin, type I cytoske 57.1 49 0.0017 26.8 8.2 50 255-304 77-126 (131)
159 3qh9_A Liprin-beta-2; coiled-c 57.0 59 0.002 25.2 8.0 45 255-299 26-77 (81)
160 3tnu_A Keratin, type I cytoske 56.6 78 0.0027 25.6 9.9 10 288-297 89-98 (131)
161 3tnu_B Keratin, type II cytosk 56.4 77 0.0026 25.5 9.9 21 260-280 48-68 (129)
162 4dzn_A Coiled-coil peptide CC- 56.1 30 0.001 22.1 5.2 23 260-282 7-29 (33)
163 1zme_C Proline utilization tra 55.4 11 0.00037 26.6 3.4 24 255-278 44-67 (70)
164 3w03_C DNA repair protein XRCC 53.8 20 0.00067 31.7 5.5 31 255-285 152-182 (184)
165 1nlw_A MAD protein, MAX dimeri 53.6 29 0.00098 26.3 5.8 24 279-302 57-80 (80)
166 2fic_A Bridging integrator 1; 53.5 61 0.0021 28.1 8.8 11 292-302 199-209 (251)
167 3trt_A Vimentin; cytoskeleton, 53.3 59 0.002 23.7 7.4 55 239-296 22-76 (77)
168 3ghg_A Fibrinogen alpha chain; 53.3 47 0.0016 33.8 8.7 45 256-300 111-155 (562)
169 3i00_A HIP-I, huntingtin-inter 52.3 74 0.0025 26.0 8.4 39 243-281 35-80 (120)
170 3a2a_A Voltage-gated hydrogen 52.2 44 0.0015 24.3 6.1 26 258-283 21-46 (58)
171 4ath_A MITF, microphthalmia-as 52.1 32 0.0011 26.7 5.8 30 255-284 49-78 (83)
172 2bni_A General control protein 51.4 22 0.00074 23.5 4.0 26 279-304 4-29 (34)
173 1ik9_A DNA repair protein XRCC 51.3 43 0.0015 29.8 7.4 15 108-122 60-74 (213)
174 1uo4_A General control protein 50.5 21 0.00071 23.5 3.8 26 279-304 4-29 (34)
175 4b4t_K 26S protease regulatory 50.2 26 0.00089 34.1 6.3 44 260-303 47-90 (428)
176 2eqb_B RAB guanine nucleotide 50.1 96 0.0033 24.7 11.8 51 255-305 12-62 (97)
177 3s4r_A Vimentin; alpha-helix, 49.9 88 0.003 24.2 10.7 29 276-304 56-84 (93)
178 1j1d_B Troponin T, TNT; THIN f 49.8 99 0.0034 24.8 8.9 40 266-305 46-85 (106)
179 1wle_A Seryl-tRNA synthetase; 49.4 1.9E+02 0.0065 28.7 12.5 30 273-302 120-149 (501)
180 3vkg_A Dynein heavy chain, cyt 49.3 35 0.0012 41.5 8.2 35 271-305 2037-2071(3245)
181 3nmd_A CGMP dependent protein 49.2 43 0.0015 25.4 6.0 31 273-303 37-67 (72)
182 3qh9_A Liprin-beta-2; coiled-c 49.0 91 0.0031 24.2 7.9 44 257-300 21-64 (81)
183 2lz1_A Nuclear factor erythroi 49.0 0.33 1.1E-05 38.6 -6.0 23 232-254 64-86 (90)
184 2hy6_A General control protein 48.8 23 0.00079 23.3 3.8 25 280-304 5-29 (34)
185 3ra3_A P1C; coiled coil domain 48.7 13 0.00045 23.0 2.5 21 286-306 3-23 (28)
186 3m0a_A TNF receptor-associated 48.6 70 0.0024 22.7 8.0 9 296-304 46-54 (66)
187 1uix_A RHO-associated kinase; 48.4 73 0.0025 24.1 7.2 25 262-286 4-28 (71)
188 1d7m_A Cortexillin I; coiled-c 48.3 1E+02 0.0034 24.6 8.2 46 243-288 13-58 (101)
189 3e98_A GAF domain of unknown f 48.0 36 0.0012 30.7 6.5 18 269-286 96-113 (252)
190 3q0x_A Centriole protein; cent 48.0 38 0.0013 30.7 6.6 57 234-296 163-219 (228)
191 3ol1_A Vimentin; structural ge 47.8 89 0.003 25.1 8.2 53 254-306 26-78 (119)
192 4ath_A MITF, microphthalmia-as 47.5 59 0.002 25.2 6.7 39 254-303 38-76 (83)
193 2efr_A General control protein 47.2 1.3E+02 0.0046 25.6 10.3 59 245-303 95-153 (155)
194 3oa7_A Head morphogenesis prot 46.8 69 0.0024 28.7 7.9 66 229-304 7-72 (206)
195 3cve_A Homer protein homolog 1 46.7 92 0.0031 23.5 10.7 49 254-302 20-68 (72)
196 3bbp_D GRIP and coiled-coil do 45.6 20 0.00069 27.2 3.6 26 278-303 38-63 (71)
197 1hlo_A Protein (transcription 44.9 15 0.0005 27.5 2.9 13 254-266 28-40 (80)
198 1kd8_A GABH AIV, GCN4 acid bas 44.2 22 0.00076 23.7 3.2 6 266-271 5-10 (36)
199 1m1j_C Fibrinogen gamma chain; 44.1 64 0.0022 31.5 8.0 11 294-304 123-133 (409)
200 2ve7_A Kinetochore protein HEC 44.1 32 0.0011 32.0 5.7 32 261-292 184-215 (315)
201 3mov_A Lamin-B1; LMNB1, B-type 43.9 1.1E+02 0.0039 23.8 9.9 50 255-304 37-86 (95)
202 1gk4_A Vimentin; intermediate 43.7 1E+02 0.0035 23.2 12.1 70 233-304 6-75 (84)
203 3ra3_B P2F; coiled coil domain 43.2 21 0.0007 22.2 2.8 8 270-277 8-15 (28)
204 3vkg_A Dynein heavy chain, cyt 43.2 1.5E+02 0.0053 36.2 12.3 73 232-304 2010-2098(3245)
205 2v4h_A NF-kappa-B essential mo 43.0 1.3E+02 0.0046 24.4 10.1 48 255-302 62-109 (110)
206 1am9_A Srebp-1A, protein (ster 42.8 1E+02 0.0035 23.0 9.7 25 255-279 50-74 (82)
207 3a5t_A Transcription factor MA 42.6 2.2 7.5E-05 34.7 -2.2 36 270-305 59-94 (107)
208 1s1c_X RHO-associated, coiled- 42.5 77 0.0026 23.9 6.5 31 259-289 3-33 (71)
209 2wq1_A General control protein 42.3 37 0.0013 22.2 4.0 23 281-303 5-27 (33)
210 2oa5_A Hypothetical protein BQ 41.9 14 0.00049 30.2 2.5 23 278-300 10-32 (110)
211 3lay_A Zinc resistance-associa 41.6 57 0.002 28.2 6.5 9 121-129 30-38 (175)
212 2aze_A Transcription factor DP 41.4 67 0.0023 27.6 6.8 19 250-268 21-39 (155)
213 1ik9_A DNA repair protein XRCC 40.8 1E+02 0.0035 27.3 8.2 23 257-279 141-163 (213)
214 2ve7_C Kinetochore protein NUF 40.7 16 0.00054 33.2 2.9 36 271-306 143-178 (250)
215 1deq_A Fibrinogen (alpha chain 40.7 55 0.0019 32.0 6.8 33 273-305 117-149 (390)
216 1fmh_B General control protein 40.4 69 0.0024 20.5 5.0 29 257-285 3-31 (33)
217 1jcd_A Major outer membrane li 40.3 97 0.0033 22.0 6.8 20 258-277 14-33 (52)
218 2zvf_A Alanyl-tRNA synthetase; 40.2 62 0.0021 26.5 6.3 32 258-289 28-59 (171)
219 2er8_A Regulatory protein Leu3 39.4 16 0.00055 26.0 2.3 21 254-274 48-68 (72)
220 1m1j_B Fibrinogen beta chain; 39.3 2.2E+02 0.0076 28.2 11.1 13 233-245 105-117 (464)
221 1f5n_A Interferon-induced guan 38.4 3.3E+02 0.011 27.5 12.5 17 289-305 566-582 (592)
222 3w03_C DNA repair protein XRCC 38.1 71 0.0024 28.1 6.5 34 255-288 145-178 (184)
223 3mtu_A Tropomyosin alpha-1 cha 37.8 62 0.0021 24.2 5.4 47 255-301 16-62 (75)
224 1gmj_A ATPase inhibitor; coile 37.7 1.4E+02 0.0049 23.2 9.6 10 241-250 23-32 (84)
225 3r2p_A Apolipoprotein A-I; amp 37.6 1E+02 0.0035 26.1 7.5 17 254-270 88-104 (185)
226 4b4t_K 26S protease regulatory 37.6 61 0.0021 31.4 6.7 40 257-296 51-90 (428)
227 2dq0_A Seryl-tRNA synthetase; 37.4 1.4E+02 0.0049 29.1 9.4 29 274-302 74-102 (455)
228 2xv5_A Lamin-A/C; structural p 37.0 1.3E+02 0.0045 22.5 8.3 50 248-297 5-54 (74)
229 4dzo_A Mitotic spindle assembl 36.9 66 0.0023 26.3 5.8 35 255-289 4-38 (123)
230 3q0x_A Centriole protein; cent 36.9 1.1E+02 0.0036 27.8 7.7 36 256-291 186-221 (228)
231 2q6q_A Spindle POLE BODY compo 36.2 1.4E+02 0.0048 22.6 8.1 16 288-303 43-58 (74)
232 4emc_A Monopolin complex subun 35.6 1.5E+02 0.0051 26.3 8.2 26 260-285 32-57 (190)
233 1zxa_A CGMP-dependent protein 35.5 74 0.0025 23.7 5.3 32 251-282 21-52 (67)
234 4dzn_A Coiled-coil peptide CC- 35.1 87 0.003 20.0 4.8 23 274-296 7-29 (33)
235 3trt_A Vimentin; cytoskeleton, 34.7 1.3E+02 0.0044 21.8 7.7 20 285-304 51-70 (77)
236 3qne_A Seryl-tRNA synthetase, 34.7 3.5E+02 0.012 26.8 11.8 29 274-302 76-104 (485)
237 3swk_A Vimentin; cytoskeleton, 34.2 1.5E+02 0.0053 22.5 8.6 10 293-302 66-75 (86)
238 4gkw_A Spindle assembly abnorm 34.0 2E+02 0.0069 24.4 8.4 43 263-305 113-162 (167)
239 2p4v_A Transcription elongatio 33.5 1.5E+02 0.005 24.8 7.7 23 283-305 46-68 (158)
240 2fxo_A Myosin heavy chain, car 33.4 1.9E+02 0.0064 23.3 11.9 40 258-297 65-104 (129)
241 2akf_A Coronin-1A; coiled coil 33.2 97 0.0033 19.9 4.8 25 259-283 3-27 (32)
242 1wle_A Seryl-tRNA synthetase; 33.1 1.5E+02 0.0053 29.4 8.9 9 293-301 126-134 (501)
243 1hlo_A Protein (transcription 32.4 41 0.0014 25.0 3.6 21 284-304 58-78 (80)
244 1ses_A Seryl-tRNA synthetase; 32.4 2E+02 0.0069 27.6 9.4 30 273-302 68-97 (421)
245 2w6b_A RHO guanine nucleotide 32.4 1.4E+02 0.0049 21.6 7.1 32 258-289 13-44 (56)
246 4dyl_A Tyrosine-protein kinase 32.3 3E+02 0.01 25.9 10.5 62 245-306 320-389 (406)
247 3he4_A Synzip6; heterodimeric 32.2 68 0.0023 22.6 4.4 33 258-290 20-52 (56)
248 1fxk_C Protein (prefoldin); ar 31.7 1.9E+02 0.0065 22.8 8.1 30 258-287 98-127 (133)
249 3mud_A DNA repair protein XRCC 31.5 1.9E+02 0.0064 25.3 8.1 33 246-278 133-165 (175)
250 1a93_B MAX protein, coiled coi 31.2 77 0.0026 20.9 4.2 20 260-279 12-31 (34)
251 2dq0_A Seryl-tRNA synthetase; 30.9 3.5E+02 0.012 26.3 10.9 18 262-279 45-62 (455)
252 3uux_B Mitochondrial division 30.8 1.8E+02 0.0062 26.6 8.2 74 230-303 151-225 (242)
253 2r2v_A GCN4 leucine zipper; co 30.8 72 0.0025 21.0 4.0 23 281-303 6-28 (34)
254 1m1j_A Fibrinogen alpha subuni 30.7 1.5E+02 0.0052 29.7 8.2 33 273-305 115-147 (491)
255 1lwu_C Fibrinogen gamma chain; 30.5 1.5E+02 0.0051 28.0 7.9 10 273-282 37-46 (323)
256 1lwu_C Fibrinogen gamma chain; 30.0 1.5E+02 0.005 28.1 7.7 25 258-282 29-53 (323)
257 1m1j_B Fibrinogen beta chain; 29.9 1.3E+02 0.0045 29.9 7.7 8 109-116 40-47 (464)
258 1uii_A Geminin; human, DNA rep 29.9 1.9E+02 0.0067 22.4 7.5 25 258-282 49-73 (83)
259 1grj_A GREA protein; transcrip 29.5 2.3E+02 0.0079 23.5 8.2 22 284-305 47-68 (158)
260 2zqm_A Prefoldin beta subunit 29.1 1.2E+02 0.0042 23.2 6.0 25 261-285 83-107 (117)
261 2b5u_A Colicin E3; high resolu 29.1 3.5E+02 0.012 27.5 10.5 11 226-236 289-299 (551)
262 1deq_A Fibrinogen (alpha chain 28.7 1.5E+02 0.005 29.0 7.6 45 255-299 113-157 (390)
263 3v86_A De novo design helix; c 28.5 82 0.0028 19.3 3.7 19 260-278 5-23 (27)
264 3rrk_A V-type ATPase 116 kDa s 28.4 2.3E+02 0.008 25.7 8.8 8 126-133 132-139 (357)
265 1ic2_A Tropomyosin alpha chain 28.2 1.8E+02 0.0062 21.5 12.1 56 245-300 17-72 (81)
266 3vmx_A Voltage-gated hydrogen 27.8 1.6E+02 0.0055 20.7 6.3 27 256-282 12-38 (48)
267 4e61_A Protein BIM1; EB1-like 27.6 1.2E+02 0.0042 24.5 5.8 20 262-281 18-37 (106)
268 3s84_A Apolipoprotein A-IV; fo 27.6 3.4E+02 0.011 24.6 9.6 12 256-267 45-56 (273)
269 4b4t_J 26S protease regulatory 27.2 69 0.0024 31.0 5.1 35 256-290 26-60 (405)
270 3s84_A Apolipoprotein A-IV; fo 26.9 2E+02 0.0069 26.1 7.9 23 244-266 165-187 (273)
271 4ati_A MITF, microphthalmia-as 26.8 1E+02 0.0036 24.7 5.4 21 284-304 92-112 (118)
272 2l5g_A GPS2 protein, G protein 25.8 77 0.0026 21.3 3.5 20 255-274 15-34 (38)
273 3iox_A AGI/II, PA; alpha helix 25.5 2.5E+02 0.0085 28.3 8.8 32 257-288 36-67 (497)
274 3tq7_B Microtubule-associated 25.4 1.4E+02 0.0047 23.0 5.5 46 255-300 8-53 (82)
275 1fxk_C Protein (prefoldin); ar 25.1 1.9E+02 0.0065 22.8 6.7 13 262-274 8-20 (133)
276 3gp4_A Transcriptional regulat 25.1 1.9E+02 0.0064 23.5 6.7 32 255-286 88-119 (142)
277 1joc_A EEA1, early endosomal a 25.1 2.6E+02 0.009 22.3 8.0 27 256-282 19-45 (125)
278 3tq2_A KE1; parallel three hel 24.7 1.5E+02 0.0051 19.3 5.3 30 273-302 5-34 (36)
279 3ljm_A Coil Ser L9C; de novo d 24.5 1.4E+02 0.0047 18.8 4.5 23 258-280 4-26 (31)
280 1tu3_F RAB GTPase binding effe 24.4 1.2E+02 0.004 23.4 4.8 42 260-304 10-54 (79)
281 3viq_B Mating-type switching p 24.3 2.2E+02 0.0075 22.1 6.5 41 264-304 3-49 (85)
282 2l5g_B Putative uncharacterize 24.2 1.6E+02 0.0055 20.2 5.0 31 259-289 6-36 (42)
283 1gs9_A Apolipoprotein E, APOE4 23.9 1.6E+02 0.0053 25.0 6.2 13 294-306 147-159 (165)
284 1nfn_A Apolipoprotein E3; lipi 23.7 1.2E+02 0.0041 26.1 5.5 14 255-268 106-119 (191)
285 4ati_A MITF, microphthalmia-as 23.4 49 0.0017 26.7 2.8 14 255-268 74-87 (118)
286 4e61_A Protein BIM1; EB1-like 23.3 1.8E+02 0.0061 23.5 6.0 31 255-285 25-55 (106)
287 1l8d_A DNA double-strand break 23.1 2.4E+02 0.0083 21.4 6.7 39 253-291 62-100 (112)
288 2wg5_A General control protein 23.0 61 0.0021 25.7 3.2 17 260-276 12-28 (109)
289 2aze_B Transcription factor E2 22.9 2E+02 0.0069 22.7 6.3 34 257-290 8-41 (106)
290 2xu6_A MDV1 coiled coil; prote 22.5 2.5E+02 0.0085 21.2 6.3 48 255-302 21-68 (72)
291 1m1j_A Fibrinogen alpha subuni 22.3 2.6E+02 0.0088 28.1 8.1 47 254-300 110-156 (491)
292 3he5_B Synzip2; heterodimeric 21.4 2.1E+02 0.0072 19.8 6.3 11 272-282 27-37 (52)
293 3he4_A Synzip6; heterodimeric 21.0 2.2E+02 0.0076 20.0 5.4 27 269-302 17-43 (56)
294 1avy_A Fibritin, gpwac M; bact 21.0 2.4E+02 0.0081 21.4 5.8 33 257-289 10-42 (74)
295 1g6u_A Domain swapped dimer; d 20.9 2.1E+02 0.0071 19.6 6.7 6 295-300 39-44 (48)
296 1lrz_A FEMA, factor essential 20.4 3.2E+02 0.011 25.6 8.3 21 255-275 247-267 (426)
297 2dq3_A Seryl-tRNA synthetase; 20.3 1.7E+02 0.0057 28.2 6.3 28 275-302 74-101 (425)
298 2i1j_A Moesin; FERM, coiled-co 20.2 82 0.0028 31.7 4.2 42 257-298 337-378 (575)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.54 E-value=7.9e-15 Score=107.20 Aligned_cols=53 Identities=34% Similarity=0.596 Sum_probs=49.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
||.+||++||+||++||.||++|+++||.+|..|+.||..|..++..|++.|.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999999999999998887653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.31 E-value=7.9e-12 Score=93.15 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=50.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
+||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|+.++..|.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999887666555443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.25 E-value=2.4e-11 Score=89.76 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=51.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
||.+|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|+ .|+..|+..|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~-------~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR-------NEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 6889999999999999999999999999999999999999998888655 4555555443
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.22 E-value=1.8e-11 Score=91.61 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
++..+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|++++.
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345999999999999999999999999999999999999888877653
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.17 E-value=6.7e-11 Score=87.70 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=46.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
|+.||+.+||++|++||.||++++.+|+.+|..|+.+|..|..++..|..+
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999888765543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.02 E-value=8.7e-10 Score=84.31 Aligned_cols=61 Identities=38% Similarity=0.431 Sum_probs=54.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
.||+..||.++|..|.||++||.+||.+|..|+.++..|..++..|..++..|..||..||
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999999999999999888888888877777777777664
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.92 E-value=2.7e-09 Score=79.60 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
|+.+++.+||.+|+|+|.||++++.+|+.++..|+.+|..|..++.. |..|+..|+.-|.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKDLIE 61 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 68899999999999999999999999999999999999999988875 4466666665543
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.57 E-value=3.5e-07 Score=71.17 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|..++..|
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445578899999999999999999999999999999999999988765554443
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.56 E-value=3.8e-07 Score=72.31 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=47.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|..++..|
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678999999999999999999999999999999999999988655444433
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.47 E-value=6.4e-09 Score=85.37 Aligned_cols=46 Identities=33% Similarity=0.419 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 276 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~ 276 (306)
.+.|..||.++||.+|+.||.||.+...+||.++..|..+...|..
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~ 79 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLAS 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999666555544443333
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.26 E-value=5.7e-06 Score=66.01 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
...|..||.++||..|+-||.||.....+||.++..|..+...|..++..+. .|-..+++.++.|
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~-------~e~d~~k~k~~~L 88 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA-------RERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 4688999999999999999999999999999888888777777766666544 4444444444443
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.32 E-value=0.00054 Score=47.44 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
|+|+.+||.++..|+..|++|..++. .|..||..||+-+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHhc
Confidence 58999999999999988887766665 67799999998653
No 13
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.22 E-value=0.028 Score=40.47 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.+.|-.||+.|+.||..|++++.+=..++..|++|-.-+|.-+..|..|+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
Confidence 46788999999999999999999999999999999999999999888765
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.04 E-value=0.003 Score=50.41 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQAHLNELET 262 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~ 262 (306)
...|..||..+||.+|+++|+||...+..|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 46789999999999999999999998887763
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.18 E-value=0.089 Score=41.13 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+.-|.-+|+.|+.+|..|..++..++.....+..+|..|+.+....+.||
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777777778888888888877766553
No 16
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.82 E-value=0.12 Score=38.37 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
|..-|.+|.+|..-|..|..++..++.+++.|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45668899999999999999999999999999999999984
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.44 E-value=0.17 Score=42.74 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
...+.|+.++..+..|...|+.++..++.++..+..++..|+.++..|+.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555543
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.00 E-value=0.27 Score=38.35 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.-++.||.+|.++-....-|.-++.+|+++...+..+|..++...+.|+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3567888888888888888888888888888888888888555444433
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.33 E-value=0.44 Score=38.60 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLK-------GLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~-------~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
-+||.+++.|+.||..|+. ++..|..++..|..||..|+.+-+-.+
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577777777777766665 677777777777777777777665544
No 20
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=92.63 E-value=0.5 Score=38.18 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVN----------------------------QKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~----------------------------qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.+..|..+|+.|+.||..|+.++..|. .-+.....+-..|+++++.||.+|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554443 223344455566667777776653
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.74 E-value=1.9 Score=42.19 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.++++..+.+.++.|...|.++++..+++...+..||..+++++..|..|+
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445556666677777777777777888888888888888888887764
No 22
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.73 E-value=0.19 Score=33.08 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
|..||.+|+.|..+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567899999999999988888887664
No 23
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=91.61 E-value=0.32 Score=32.56 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
+|..||.+|+.|..+|+.|..++..|+..+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 5788999999999999999988887776543
No 24
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.41 E-value=0.26 Score=32.65 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
+|..||.+|+.|-.+|+.|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5778899999988888888888776654
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.23 E-value=1.4 Score=37.09 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.+++++.++..|.-+...+..++..+.+++..+..++..|+.++..|.+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444555555544444443
No 26
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.23 E-value=1.2 Score=30.89 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
.+..||.+|..|+.||..|++.+-.-..-+.-++.|-..||..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999998876443333334444444444433
No 27
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=90.21 E-value=0.23 Score=31.59 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 281 VNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 281 L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
|+.-+..+++||..|++.++.|-+||
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445667888888888888888775
No 28
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=90.13 E-value=1.7 Score=31.84 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 275 (306)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~ 275 (306)
+.-+||.++|++|.|=+..|+....-...-..||..|+
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 34579999999999988877766655555555555543
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.81 E-value=1.9 Score=46.77 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 280 DVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 280 ~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+|+++...|..||..|++++..|..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788888888777763
No 30
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.72 E-value=1.6 Score=35.09 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 278 LTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
+...+.....+...|+.|+.+|..
T Consensus 71 Va~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 71 VADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455666666777777777654
No 31
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=89.70 E-value=0.9 Score=44.05 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.++.+..|+.++..|+.+...|..++.++.+++...+..-+.|--++++|+.+|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 457788899999999999999999999999999999999999999999998653
No 32
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=89.57 E-value=0.43 Score=31.92 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
+|..||.+|+.|..+|+.|..++..|+.-+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4678999999999999999988887765443
No 33
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.51 E-value=6.7 Score=33.77 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=46.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
+.++.+.+-+..-++--......+.+-..-+..|..|...|..++..+.+++..+..||..|-.+.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444334444555555677888999999999999999999999999998876544
No 34
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=89.43 E-value=0.48 Score=31.31 Aligned_cols=28 Identities=4% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5788999999999999888888877664
No 35
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=88.83 E-value=1.9 Score=30.61 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
+.++..|+.-|..|..+++.|+..|..++.|+.+|+.=+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 5788889999999999999999999999999888876543
No 36
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.47 E-value=2.4 Score=35.20 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
+|+.|+.|+..|..+|.++..++..|..+|..|..+|
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 3555556665565565555555555666666555554
No 37
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=88.40 E-value=2.6 Score=29.55 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+||.+|..|+.--..|..++..|-.+|. .-...||++|..|..+|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC
Confidence 6788888888888878777776665554 44578999999998876
No 38
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=88.16 E-value=1.4 Score=32.25 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
-|.++..|+..|-.|..+++.|..+|...+.|+.+|..-+.
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888888888888887776543
No 39
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=88.14 E-value=0.67 Score=30.45 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678899999999999888888877654
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=87.93 E-value=0.64 Score=30.76 Aligned_cols=28 Identities=7% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999888887664
No 41
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=87.78 E-value=0.66 Score=30.69 Aligned_cols=28 Identities=7% Similarity=0.306 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5778999999999999988888887664
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.65 E-value=0.75 Score=34.77 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 280 DVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 280 ~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|......+..||..|+.+|..|+.+
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555566666655555543
No 43
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=87.60 E-value=0.045 Score=43.55 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 021874 231 VDDKRARRMLSNRESARRSRRRKQA 255 (306)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~ 255 (306)
.-.|..||..+||.+||++|+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4578899999999999999999853
No 44
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=87.40 E-value=0.85 Score=30.16 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
++..||.+|+.|-.+|..|..++..|+.-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56789999999999999998888877643
No 45
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=87.36 E-value=8.5 Score=29.70 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
....+|+.+...|..+...|..++.++...+..|......|..+|..|.++|
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457899999999999999999999999999999999999999999998874
No 46
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=87.30 E-value=2.7 Score=29.97 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.+|..++..|...|..|...+. ....+=..|+.+|+.|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~-------~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLK-------EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 3455555555555555555444 4555555666666665
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.15 E-value=2.7 Score=32.03 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
+..++..++.+|..|..++..|++.+..-..+-..++.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333333
No 48
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=87.04 E-value=1.4 Score=42.87 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
..+.+|.+++.+|+.++..+..++..+.+++.....+.+.|--+++.|+.+|
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 5678888888889999999999999999999999999999999999998653
No 49
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.78 E-value=1.1 Score=33.00 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 276 KGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 276 ~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
..+..|..++..|..+|..|+.++..|+..|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777788888888888887643
No 50
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.74 E-value=1.8 Score=33.19 Aligned_cols=49 Identities=29% Similarity=0.248 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
++|.+||.++..++.-...|...+..-++++..+..+.+.|..++..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888888888887777777777777777777766554
No 51
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=86.61 E-value=0.93 Score=29.78 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
|..||.+|+.|..+|..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678999999999999988888877654
No 52
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.45 E-value=3.1 Score=31.79 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.+|+.++..|+...+-+-..+..|+..+..-..+-..|+.++..|..|+
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777777776664
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=86.45 E-value=4.8 Score=28.88 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
..|..++..+..+|..|+.+|..|+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 54
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.93 E-value=1.3 Score=31.68 Aligned_cols=31 Identities=10% Similarity=0.195 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 276 KGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 276 ~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
..+..|..++..|..||..|+.++..|+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467778888889999999999999998754
No 55
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.78 E-value=1.3 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
..|+.|+.||..|+.++. .|..+|..|++++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~-------~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYE-------AIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 455556655555555444 45556666665553
No 56
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.23 E-value=13 Score=30.30 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+..|+.++..|+..|..|...+.+|.+..+.|+...|..-.-++.+..|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 4556666666666666666666666666666666666666555555544
No 57
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=85.17 E-value=1.8 Score=33.57 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
..+..|+.+++.-+.+-..++.++..+.+.+...-.|=..|++.+..|
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344555555555555555566666666666666666666666666554
No 58
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.15 E-value=5.1 Score=30.95 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l-------~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
++-.+|+.|..||.+|...- .+|-.++..|.+|+..|+.++..++
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45556666666666665442 3455667777777777777766654
No 59
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.93 E-value=2.5 Score=30.85 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~ 279 (306)
+|+.+...|+.+...|..++.
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.92 E-value=1.1 Score=33.89 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021874 285 YDESAVNNRILKADIETL 302 (306)
Q Consensus 285 ~~~l~~ENr~Lraql~~L 302 (306)
...|..+|..|++++..|
T Consensus 63 ~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 63 IDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334445555555555544
No 61
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.59 E-value=12 Score=33.11 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+..|+.++..|+..+..|..++..|.+..+.++...|.+..-++.+..|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~k 138 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR 138 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Confidence 5667777777777777777777777777777777777777777776655
No 62
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.44 E-value=10 Score=33.14 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
|-...+..-=+.=|+.|.+-.+.+.+|+.++..|+.|...++. .+..+.++|+.|...|..|.
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~-------~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH-------NLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566677777777777777777666655555444 34455566666665555543
No 63
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.95 E-value=4 Score=33.90 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..|+.+..+-......|..+|..|+++++.+..+-..||.+.+.|..+
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 456666665566788899999999999999999999999999888765
No 64
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.72 E-value=13 Score=28.88 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
|-.||=.+=.|-|+- +..++...+..|..+.++|.+...++..|..|=+.|+.+++.|+.
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666776666665553 445667778888888888888888888888888888888888764
No 65
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=83.54 E-value=1.3 Score=40.98 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
...+.+|+.++..|...|..|...+..+++++..|..|+..|+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446677778888887777777777776666666666666554
No 66
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.11 E-value=5.3 Score=31.33 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
.+...|+.++..+......+..|-..|..++..|+.||
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33334444444444444444444444556666666654
No 67
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=82.96 E-value=4.6 Score=27.97 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
-|.+|+.|...|..+++.|..+......--.-|..++..||.|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 47788888888888888888777666666677888888888764
No 68
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.91 E-value=8.6 Score=41.78 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
+..++|+.+|..|+.||+.|++++.+|+......
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888899998888888888444333
No 69
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.90 E-value=2.3 Score=30.37 Aligned_cols=18 Identities=0% Similarity=0.207 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~ 280 (306)
++..|+.++..|..++.+
T Consensus 27 E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 70
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=82.90 E-value=0.8 Score=41.85 Aligned_cols=73 Identities=21% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRK-------QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RK-------k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.||.||.++-=.==-|.|.-| ..+.+++..++++|..||+.|..+++.|+.+..+..++---.+..+..|.+
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~ 197 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYH 197 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 4789999876543334444433 444555666666777777777777766666655555443333344444443
No 71
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.88 E-value=9.4 Score=31.43 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..-+.++..|+.+|..|+.+. ..-+...+.+..||..|+.+++.|+..
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL-------~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADL-------AEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555444 444555667889999999999988653
No 72
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.71 E-value=5.3 Score=35.43 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
..+..|+.+...|+.....|..++..|+..|.-|.-.
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3355555555555555555555555555555555433
No 73
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.63 E-value=6.1 Score=31.94 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
-..+.+|+.+|..|+.||+.|+.+...-.++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4678899999999999999999887765543
No 74
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.52 E-value=16 Score=28.75 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSS 273 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~ 273 (306)
..+..|..++..|+.+...
T Consensus 44 ~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 75
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=82.16 E-value=5.7 Score=30.33 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+|..-+.++..|+...+--.+-.+.|+-.+-.+..||..|+.++..|++
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 45555566666666666555566677888888999999999999988875
No 76
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=82.01 E-value=3.1 Score=34.15 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
.-+++|..++.+|+.||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999999886
No 77
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.91 E-value=2.8 Score=28.13 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 268 RAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 268 e~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
-.||..|.+.++.-.+++..|..+|..|+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46899999999999999999999999886
No 78
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=81.53 E-value=5.2 Score=30.98 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
+-+|..++..|+.|...|+-+++.+..++..+....+.+-.+|.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777766666666666666655554
No 79
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=81.03 E-value=3.8 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++||.+|..|+.-...|..++..|-.+|. .-...||++|..|..+
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKF 47 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45777777777777777776666554443 3345677777777654
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.90 E-value=5.8 Score=38.67 Aligned_cols=24 Identities=4% Similarity=-0.069 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
+.+.++.+++.+.++++..++++.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchh
Confidence 333333333333333333333333
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=80.72 E-value=8.5 Score=29.48 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRK---QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RK---k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
.||.|=-+.=|.|-...|.|- +..+.+|+.+-..|+.+...|..++..|.+-+.
T Consensus 18 ~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 18 IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554555555555554443 466788999999999999999999988876543
No 82
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=80.64 E-value=3.2 Score=31.69 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
..|+..|+.+...|..++..|..++..|++++
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777776666666665555555544443
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.00 E-value=17 Score=28.03 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.+..-..++..|+.-...|..--..|..-+..+..|-..|...|+.|+.|
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444455555555555555555555544
No 84
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=79.97 E-value=14 Score=29.09 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+|-+.|-.-|...=.. ..+ .+...|..++..|..+...|..||..+..++..++.|
T Consensus 29 ~RRtlKNRgyAq~CR~--Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRY--KRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555543322 111 1223444444555555667888999999999988876
No 85
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=79.23 E-value=13 Score=29.10 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 268 e~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
-.||..|..++..|......+..+|..|+.-++.+
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888888888887665554
No 86
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=79.21 E-value=11 Score=33.01 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
--|.||++ .+|...+..++..+..|...+..|......|..+...|.+++.
T Consensus 29 ~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 29 AVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444543 4555555555555555555555554444444444444444443
No 87
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=79.18 E-value=3.2 Score=27.42 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
+|..||.+|+.|-.++..|..++..|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999999888888877664
No 88
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.17 E-value=2.1 Score=39.66 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.++..|+.++..|..++..|...+..+..|...||.+++.|+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66788888888888888888888888888888888888888863
No 89
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=78.76 E-value=4.1 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
+..||.+|.+.+.||-.|.+++..|..+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3456777777777777777666666544
No 90
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=78.68 E-value=11 Score=28.32 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.++.++.++...+..+..+-.++..|+.++..+..+=..+..++.....
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555555555554444444444443
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.28 E-value=7.2 Score=28.05 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 266 QLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (306)
Q Consensus 266 ~Le~EN~~L~~~l~~L~qk~~~l~~ENr 293 (306)
.|+.+...|..++..|..++..|..|+.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 92
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=78.18 E-value=17 Score=26.26 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 280 DVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 280 ~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
.|..++..|..+|..|+.+|..|+
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 93
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.96 E-value=17 Score=29.63 Aligned_cols=56 Identities=18% Similarity=0.357 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.-|..+..=+.|+-+||..-..|+.........|.++..+|..+.-.|.-|..+|.
T Consensus 46 ~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 46 QTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666678888999999999998888889999999999999999999987775
No 94
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=77.75 E-value=7.9 Score=29.96 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 268 e~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
-.||..|..++..+...+..+..+|+.|+.-+...+
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888888888876555443
No 95
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.72 E-value=15 Score=28.74 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=40.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRK---QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RK---k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.||.|=-+.=|.|-...|.|- +..+.+|+.+-..|+.+...|..++..|..-+..+-
T Consensus 18 ~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 18 IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 455554555555554444443 466789999999999999999999998888776543
No 96
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.61 E-value=3.2 Score=27.44 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 278 LTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+|..++..|..+|..|..++..|+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345566666777777777777777764
No 97
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=77.56 E-value=20 Score=27.43 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
-...+.++...+..|+.+...++..++...+.|+.|..=--.|-.+|.+.|.
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456677888888888888888888888888898888888888888888764
No 98
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.42 E-value=24 Score=27.66 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+..+.++|+....-..........|..+-..+-.+.+.+..++..+......+.++-.--..++..|+.|
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K~ 96 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3345556666655555555555555555555556666666666666777777777777777777777654
No 99
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.06 E-value=12 Score=29.49 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l 278 (306)
++.+..+++.+...|.+++
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~ 53 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3333333333333333333
No 100
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=76.86 E-value=3.8 Score=27.13 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 276 KGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 276 ~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
+++...++....+..+|..|..++..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 334444444455666666776666554
No 101
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=76.63 E-value=2.2 Score=30.66 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDV 281 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L 281 (306)
+|+.+...+..|..||..|+.++..|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 102
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.55 E-value=12 Score=30.24 Aligned_cols=70 Identities=14% Similarity=0.291 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQ--AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk--~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
++|=.|=|++| ||-=-.|-. =.++-|...++.++.....|.+++.+..+.+..+......|+.++..|+.
T Consensus 8 EEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 8 EEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667776 332221110 12233444444444444444444444444444455555555555554443
No 103
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.12 E-value=17 Score=29.49 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
+..-..|.++..|+.++.+|+.++.....-+..+..+|..|+.+...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~ 57 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQ 57 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 44455666788888888888888888777777777788888766544
No 104
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.11 E-value=12 Score=26.59 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..|..+...|..--+.-+.+|..|++
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555555555544
No 105
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=76.08 E-value=24 Score=27.18 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
++-..=+..|+.|..+|..|+..+..+..++..+.++...+-.+
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678889999999999999999999999999887777655
No 106
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.04 E-value=20 Score=29.17 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 282 NQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 282 ~qk~~~l~~ENr~Lraql~~L 302 (306)
......+..+...|+.+|..+
T Consensus 103 ~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 103 TAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443
No 107
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.89 E-value=12 Score=30.33 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
-.|+++|..+.+++.++....+++..++..+..|..+-..|+.+|..
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888999999999999888999998899998888888887753
No 108
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=75.42 E-value=10 Score=27.29 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.++...+..|+.+...++..++...+.|+.|.+=--.|-.+|.+.|.
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666777777777777777777777888888887888888887763
No 109
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.36 E-value=12 Score=28.56 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 252 RKQAHLNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 252 RKk~~l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
.|...+.+|+.++.....+...|+.++.
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666555555554
No 110
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.18 E-value=8.1 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 278 LTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
...+......+..+|..|+.+|+.|+
T Consensus 61 ~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 61 EQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444456678888888888776
No 111
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.93 E-value=3.1 Score=32.03 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 274 LLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
|+.++.+|..+...|+.||..||.
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555553
No 112
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=74.62 E-value=16 Score=25.58 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
...++.+++.++..++.+...+..++..+.+.+..+..+=..|+.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555555555555543
No 113
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=74.00 E-value=4.2 Score=26.74 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+|..++..|..+|..|..++..|+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666777788888888888888875
No 114
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.76 E-value=29 Score=33.09 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 249 SR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
-|.|.++.++....++++|+.||+.|.+.+.++..++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 33444455555555555555555555555444443333
No 115
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.69 E-value=30 Score=26.98 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 021874 288 SAVNNRILKADIETL 302 (306)
Q Consensus 288 l~~ENr~Lraql~~L 302 (306)
++.++..|.-+|+-|
T Consensus 84 AE~evasLnRriqll 98 (101)
T 3u59_A 84 AEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455554444433
No 116
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=73.20 E-value=3.5 Score=29.55 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 278 LTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
|..+...+..+..||..|+.++..|..||
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566778888899999999999888775
No 117
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=73.15 E-value=12 Score=33.71 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.||..|..++..+..++..+..+|..|+.-++.+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666667666666677777777766555443
No 118
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.97 E-value=37 Score=27.73 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 021874 243 RESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDE-------SAVNNRILKADIETLRA 304 (306)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~Le~---EN~~L~~~l~~L~qk~~~-------l~~ENr~Lraql~~Lra 304 (306)
=.+|...=..|+..+++|+.++.+++. ...-|+.++......|.. +..+...|..++..|+.
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 345555555566677777766666665 455555555555544443 34445555555555544
No 119
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=72.60 E-value=2.2 Score=32.85 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLK 276 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~ 276 (306)
.++.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766653
No 120
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=72.50 E-value=26 Score=27.92 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 240 LSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRI 294 (306)
Q Consensus 240 lsNRESArRSR~RKk~~l~eLE~qV~~Le---~EN~~L~~~l~~L~qk~~~l~~ENr~ 294 (306)
..|-.+|-..=..|+..+++|...+.+++ ..+..|..++.....-|..-...-..
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREk 65 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREK 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777778888888888887777 55666777777666666554444333
No 121
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=72.33 E-value=5.8 Score=30.12 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021874 280 DVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 280 ~L~qk~~~l~~ENr~Lraql~~ 301 (306)
.|+.+...|..+|..|+..++.
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555544
No 122
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=71.93 E-value=1.9 Score=39.30 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
.|.++.+.|+.||..|..++ .++..+..||.+||..+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLE----SEVADLKKENKDLKESL 59 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 34444555555555444433 34557778888888754
No 123
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=71.86 E-value=15 Score=28.01 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDV------NQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L------~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+..|+.|+.++..|+.+...|..++.+- -.++..+..+-..|..+|..+-
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999998888887641 1345556666666666665543
No 124
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=71.43 E-value=30 Score=26.12 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.+...+..|+.+...++..++...+.|+.|..---.|-.+|.+.|.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555566677777766777777777663
No 125
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=71.31 E-value=27 Score=25.42 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.-+.+||.++..++.-...+..+++.+.-.+..+..++..=+..++.|.+|
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~k 56 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQR 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445666666666665555554444444444444433333334445555444
No 126
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=71.15 E-value=16 Score=33.34 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESA-RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 232 e~KR~RR~lsNRESA-rRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.|-.=+-|+|||.. +.+|.||+.-.. ++..|+... --..++..|++++..++.+|-+..++|..+.+
T Consensus 91 ~yR~~LK~IR~~E~svqp~R~~R~~l~~----~I~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 91 QYRVTLKSIRNIEASVQPSRDRKEKITD----EIAHLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 345555678888866 556666644333 333344321 12356778888888888888888888776654
No 127
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.95 E-value=36 Score=32.45 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
.-|+-+++--...+..++.|+++-+.|+.+..++..++....+.|+.+...-..|-.++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 33334445555666666777777777777777777777777777777777766666554
No 128
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=70.81 E-value=7.5 Score=29.98 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
++|-.+|..|..|+..|+.++..+++-...+...++.|..++.
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666666666666666555555443
No 129
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.53 E-value=55 Score=29.17 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEH 271 (306)
Q Consensus 260 LE~qV~~Le~EN 271 (306)
|..++..++.++
T Consensus 95 L~kEie~~~~~i 106 (256)
T 3na7_A 95 LNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 130
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=69.30 E-value=6.8 Score=26.32 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 272 SSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
+.|-.++.....+...|+.+|+.|..++..
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555566777788888888777653
No 131
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.29 E-value=17 Score=32.60 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
+.+|+.++..|+.....+..++.++..++..+..+=..+++.+.
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333333333333333333
No 132
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.80 E-value=16 Score=27.38 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~ 287 (306)
..|+..|+.++..|+.+...|..++..|++++..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777766666666666666666665543
No 133
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.56 E-value=14 Score=31.71 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+..|+.++.....+...|..++..-+.+...++.++..+.++|+.|.+
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555554
No 134
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=68.40 E-value=22 Score=27.31 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
..|+..|+.+...|..+...|..++..|..++..|
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777776666666666666666665554
No 135
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=68.14 E-value=7.4 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
+.|..-+..|+.||.+|+.++++|-.+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667788889999988888876544
No 136
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=68.12 E-value=7.8 Score=24.90 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+.|..+.+.|...|-.-++.++.||.|
T Consensus 4 qalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344455556667777777777777765
No 137
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=67.74 E-value=5.7 Score=26.53 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 281 VNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 281 L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
|..+...|..+|..|..++..|+.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444444445555555555443
No 138
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.52 E-value=29 Score=27.20 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
...|..|+.+...|..+-..+.++...+..++..+..+-..|..++..
T Consensus 38 ~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 38 AENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444454544555555555555555555555555555543
No 139
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=67.05 E-value=31 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
.||..|..++..+..++..+..+|..|+.-.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777776433
No 140
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=66.73 E-value=37 Score=26.13 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
+++..++..++.+|..|..++..|++.+..-..+-..++.++..+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777777666666666666655555555443
No 141
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=66.48 E-value=3.9 Score=25.42 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 265 GQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 265 ~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
..|+.||..|.+++..|++++..+
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 356677777777766666665544
No 142
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.96 E-value=8 Score=31.10 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 277 GLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 277 ~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++..|++++..|..||..|+.++..|..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667777777777777776654
No 143
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=64.08 E-value=9.8 Score=25.08 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+|..++..|..+|..|..++..|+.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44555666666777777777776664
No 144
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=63.30 E-value=10 Score=24.82 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+|..++..|..+|..|..++..|+.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555666677777777777777664
No 145
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.81 E-value=53 Score=31.13 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 282 NQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 282 ~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..++.+++.|-..|.++|+.+++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 146
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=62.64 E-value=39 Score=26.22 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
.-...++.++...+..|..|..++..|+++...|
T Consensus 38 ~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 38 TDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666555555554
No 147
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=61.89 E-value=21 Score=24.58 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l 278 (306)
....+||.+|..|+.||.-|++-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 456788888888888888887654
No 148
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=61.45 E-value=38 Score=23.57 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+..|+..+..+..+...+..++..+..++..+..+=...+..|..|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665566666666666666666666666666666665543
No 149
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=61.10 E-value=44 Score=27.74 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
.+|+.++..|+..|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888887777777555
No 150
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.40 E-value=16 Score=32.50 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021874 263 QAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~ 279 (306)
-|..|..||..|..++.
T Consensus 21 LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 21 LVANLVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444443333333
No 151
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=60.24 E-value=43 Score=23.80 Aligned_cols=38 Identities=5% Similarity=0.039 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr 293 (306)
.++.|..+|..|..+...|...+..|+.....+..|-.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666555554444433
No 152
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.87 E-value=34 Score=34.86 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|++++..|+.++..-...-++|+..|+.++-|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555444455555555555543
No 153
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=58.69 E-value=14 Score=23.77 Aligned_cols=27 Identities=11% Similarity=0.318 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 278 LTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+..|.++...+++||-.|.+++..|..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345556667788999999999988864
No 154
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.31 E-value=57 Score=26.34 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+.++...+..|+.+...++..+....+.|..|..=--.|..+|.+.|.
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777777777777777777777777663
No 155
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.94 E-value=63 Score=30.59 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+.++-.+++.+|..++..+..+-..++++|+.||+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 437 EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333345556666666666666666666666653
No 156
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=57.78 E-value=57 Score=24.97 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
...+.....|+..+..|..+..+|..++..+......|.++-..|..
T Consensus 31 ~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~ 77 (89)
T 3bas_A 31 AKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLEN 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555554444443
No 157
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.19 E-value=25 Score=29.61 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
++..|...+.....+...|..++..-+.+...++.++..+.++|+.|.+-
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566667777777777777777777777777777777777653
No 158
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.08 E-value=49 Score=26.82 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+.++...+..|+.+...++..+....+.|..|..=--.|..+|.+.|.
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777778888888888887778888888777778888877764
No 159
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.02 E-value=59 Score=25.20 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLL-------KGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~-------~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
+.+.+|.-+|..|+.|-.+.. .++..|++++..-..+-+.|+.++
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555555555555544433 445555555555555555555544
No 160
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.61 E-value=78 Score=25.62 Aligned_cols=10 Identities=10% Similarity=-0.014 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 021874 288 SAVNNRILKA 297 (306)
Q Consensus 288 l~~ENr~Lra 297 (306)
++.+-..+|.
T Consensus 89 lE~eL~~~r~ 98 (131)
T 3tnu_A 89 VEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 161
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.44 E-value=77 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~ 280 (306)
|+.++..|+..+..|...+.+
T Consensus 48 L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 48 LRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 333334444444444333333
No 162
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=56.09 E-value=30 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
|.+++..|+.|...|+-++..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 163
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.44 E-value=11 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l 278 (306)
.|++.|+.++..|+.....|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999998888887776654
No 164
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=53.79 E-value=20 Score=31.66 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
..+.+|..++.+|+.+|..|+.+.+...+++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666665555443
No 165
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.60 E-value=29 Score=26.27 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
..+.++...|..+|..|+++++.|
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333334445666666676666543
No 166
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=53.52 E-value=61 Score=28.13 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 021874 292 NRILKADIETL 302 (306)
Q Consensus 292 Nr~Lraql~~L 302 (306)
|..|+.+|..|
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 167
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=53.34 E-value=59 Score=23.70 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
..+||+-|-.-=. ..+++|...+..-..+....+.++.+|+..++.|..|-..||
T Consensus 22 a~knr~EaE~~y~---~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 22 AAKNLQEAEEWYK---SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445554443222 234566666666555555566666666666666666554443
No 168
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.28 E-value=47 Score=33.84 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
|.++|+.++..|+.+...-..+|..|+..+..+..+=.+|..+|.
T Consensus 111 ~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 111 VSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666666666655555555555565555555555555555543
No 169
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.25 E-value=74 Score=25.99 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 021874 243 RESARRSRRRKQAHLNELETQAGQLRAE-------HSSLLKGLTDV 281 (306)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~Le~E-------N~~L~~~l~~L 281 (306)
..-|++.-..=+.++..|+.++..-+.. |..|+.++..+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556777777766665443 55555555544
No 170
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=52.22 E-value=44 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
..|-.+|.+|+..+....+++..|+.
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888887777776553
No 171
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=52.13 E-value=32 Score=26.74 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk 284 (306)
+++.+.+.+...|+..|..|..++++|..+
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 444555555666666666666665555443
No 172
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=51.43 E-value=22 Score=23.47 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+|..++..|..+|..|..++..|+.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34555666667777777777777664
No 173
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.28 E-value=43 Score=29.81 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=10.2
Q ss_pred CCChHHHHHHHHhhh
Q 021874 108 PVDSDEYRAYLKTKL 122 (306)
Q Consensus 108 ~~dp~~y~a~Lk~kL 122 (306)
.+..++|-+.|+.=|
T Consensus 60 ~~~~eey~~~l~~aL 74 (213)
T 1ik9_A 60 AMEKGKYVGELRKAL 74 (213)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 456678888876655
No 174
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=50.51 E-value=21 Score=23.55 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 279 TDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 279 ~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+|..+...|..+|..|..++..|+.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555566666677777777766654
No 175
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.20 E-value=26 Score=34.07 Aligned_cols=44 Identities=7% Similarity=0.045 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
|..++..|+.+...|..+.+.++.+...+..+-..++.++..|+
T Consensus 47 l~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 47 IYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333344444433333333334344444444444555555443
No 176
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.12 E-value=96 Score=24.72 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..+..|+.++.....+...|..++..-+.+...++.++..|.++|+.|.+-
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666667777777777777777777777777777777653
No 177
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.92 E-value=88 Score=24.23 Aligned_cols=29 Identities=7% Similarity=0.259 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 276 KGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 276 ~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+..|+.++..+..+|..|..++..|++
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666554
No 178
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=49.78 E-value=99 Score=24.81 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 266 ~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|+.-...|..++..|...-=.++..-..-.-+|..|+.|
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~r 85 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNR 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHH
Confidence 4555555555555555544444444444444555555554
No 179
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.38 E-value=1.9e+02 Score=28.71 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.|..+...|..++..++.+-..+..++..+
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555443
No 180
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.25 E-value=35 Score=41.48 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
...|..+++.|+.+|..+..|-..|+.+++..+.|
T Consensus 2037 L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2037 ITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 181
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.19 E-value=43 Score=25.39 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
..-..+..|..++.....+.+.|+.++..+|
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445555555556666666666665554
No 182
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.99 E-value=91 Score=24.15 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.++|-++|..|+.....|-.+-.+...++..-..|=..|+.+++
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34666677776666666666666666666666666666665554
No 183
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=48.97 E-value=0.33 Score=38.58 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 021874 232 DDKRARRMLSNRESARRSRRRKQ 254 (306)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk 254 (306)
-.+..||.-+||.+|+++|+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 46778999999999999999984
No 184
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=48.84 E-value=23 Score=23.33 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 280 DVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 280 ~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
+|..+...|..+|..|..++..|+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444555566666666666666653
No 185
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.66 E-value=13 Score=23.05 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 021874 286 DESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 286 ~~l~~ENr~Lraql~~Lrakv 306 (306)
..++-||..|.+.+..|.+|+
T Consensus 3 dalefendaleqkiaalkqki 23 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHH
Confidence 356677777777777777663
No 186
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=48.56 E-value=70 Score=22.74 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 021874 296 KADIETLRA 304 (306)
Q Consensus 296 raql~~Lra 304 (306)
+..++.|..
T Consensus 46 ~~~i~~Le~ 54 (66)
T 3m0a_A 46 QDKIEALSS 54 (66)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 333443333
No 187
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=48.36 E-value=73 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
..|..|..|+..|..++..+++++.
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~ 28 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLS 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 188
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=48.26 E-value=1e+02 Score=24.56 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
-++-+-||.-=..+-++|+.-+..|+.||..-.+++.+|+.++...
T Consensus 13 Le~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456655455557888888888888888888888887666554
No 189
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=48.01 E-value=36 Score=30.71 Aligned_cols=18 Identities=11% Similarity=0.050 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021874 269 AEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~ 286 (306)
.+|..+..++..+..++.
T Consensus 96 ~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 96 RENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445444444444443
No 190
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=47.98 E-value=38 Score=30.74 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=42.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
...|+-+..|-.+-+ +.+..|+.++++.+.|++.+..++.+.+++...+...-..+-
T Consensus 163 e~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666666655433 356889999999999999999999988888777766555443
No 191
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.76 E-value=89 Score=25.08 Aligned_cols=53 Identities=11% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
+..+.++...-..|..+...++..+.+++.+|......-..+..++..||.-|
T Consensus 26 R~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 26 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
No 192
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=47.55 E-value=59 Score=25.22 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
-.|+..|..++..+..+.. +...++..|+.|.-.+++|.
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHH
Confidence 4787777766665554443 44567888888888888775
No 193
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=47.24 E-value=1.3e+02 Score=25.56 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
-|-|+=.+-+..+++||.++..-+..+..+...+...-..+..+...|-.|.-.|..|.
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 45555556666667777766666666666666666666666666666766666666553
No 194
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=46.85 E-value=69 Score=28.71 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=42.8
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 229 d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.+++..-.--++-|-|-|+--|- +-+.+|+.+.-....+..+|+..+..+.+||..|+..+..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 7 KPEEHEDILNKLLDPELAQSERT----------EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHhcCHhhhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 33444444445555555554331 2244556666666677777888888899999999999998864
No 195
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=46.68 E-value=92 Score=23.51 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
...+..|+.+++.-+.+-..++.++..+.+.+...-.|=..|+..+..|
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3456667777777666677777777777777777777777777777765
No 196
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=45.62 E-value=20 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 278 LTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
+.+-..-...|..+|..||.+|..|.
T Consensus 38 L~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 38 LRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHH
Confidence 33333344456666666666666654
No 197
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.94 E-value=15 Score=27.52 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQ 266 (306)
Q Consensus 254 k~~l~eLE~qV~~ 266 (306)
...+..|..-|-.
T Consensus 28 n~~f~~Lr~lvP~ 40 (80)
T 1hlo_A 28 KDSFHSLRDSVPS 40 (80)
T ss_dssp HHHHHHHHHHSGG
T ss_pred HHHHHHHHHHCcC
Confidence 4555666654443
No 198
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=44.19 E-value=22 Score=23.69 Aligned_cols=6 Identities=67% Similarity=0.617 Sum_probs=2.2
Q ss_pred HHHHHH
Q 021874 266 QLRAEH 271 (306)
Q Consensus 266 ~Le~EN 271 (306)
+|+.+.
T Consensus 5 QLE~kV 10 (36)
T 1kd8_A 5 QLEAEV 10 (36)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 199
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.12 E-value=64 Score=31.47 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 021874 294 ILKADIETLRA 304 (306)
Q Consensus 294 ~Lraql~~Lra 304 (306)
.|+.+|..|..
T Consensus 123 ~l~~~i~~l~~ 133 (409)
T 1m1j_C 123 QLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 200
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=44.11 E-value=32 Score=32.05 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~~~l~~EN 292 (306)
+.+++.|+.+|+.|..+++.|+++...+...|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44566666666666666666655555544443
No 201
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.86 E-value=1.1e+02 Score=23.79 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
..+..+...+..|+.+...++..+....+.|..|..---.|..+|.+.|.
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777788888777778888877663
No 202
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=43.70 E-value=1e+02 Score=23.20 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
.|..+.-+-+... ....|-...+.++...+..|+.+...++..++...+.|+.|..=--.|-.+|.+.|.
T Consensus 6 l~~~~~sLE~~l~--e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 6 LKGTNESLERQMR--EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444444333 333344556788888899999999999999998889999999888888888888774
No 203
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.18 E-value=21 Score=22.19 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 021874 270 EHSSLLKG 277 (306)
Q Consensus 270 EN~~L~~~ 277 (306)
.|..|+++
T Consensus 8 knarlkqe 15 (28)
T 3ra3_B 8 KNARLKQE 15 (28)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33333333
No 204
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.18 E-value=1.5e+02 Score=36.17 Aligned_cols=73 Identities=11% Similarity=0.193 Sum_probs=42.6
Q ss_pred HHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 021874 232 DDKRAR--RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK--------------YDESAVNNRIL 295 (306)
Q Consensus 232 e~KR~R--R~lsNRESArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk--------------~~~l~~ENr~L 295 (306)
++||.+ ...++-..|+..-..+++.|.+|+.+++.|+.+.+.+..+-+.|+.+ ...|..|+.+-
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 444443 45555566666666777888888888877776665544444333332 33455566665
Q ss_pred HHHHHHHHH
Q 021874 296 KADIETLRA 304 (306)
Q Consensus 296 raql~~Lra 304 (306)
..++..|..
T Consensus 2090 ~~~~~~l~~ 2098 (3245)
T 3vkg_A 2090 EQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 205
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.05 E-value=1.3e+02 Score=24.41 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
+.+.-|+.|+.-++..-..=+.--+.+..+...|..+++.|+.++..|
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 367777788877776555555555566677777777777777776544
No 206
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=42.78 E-value=1e+02 Score=23.02 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
.|+..|+.++..|+.++..|..++.
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666655555544
No 207
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=42.64 E-value=2.2 Score=34.74 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
+...|..++..|.++...|..||..|+.++..|+.|
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666667778888888777766654
No 208
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=42.48 E-value=77 Score=23.94 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
+|...|..|..|+..|..++..+.+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666655555555554443
No 209
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.34 E-value=37 Score=22.23 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 281 VNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 281 L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
|..+...+..+|..|..++..|+
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444455555555555555554
No 210
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=41.95 E-value=14 Score=30.20 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 278 LTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 278 l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
+++|..++..|..||+.||.+|.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666677788888887765
No 211
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.55 E-value=57 Score=28.23 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhhhHHHH
Q 021874 121 KLDLACAAV 129 (306)
Q Consensus 121 kL~~~~AAv 129 (306)
||-++.+|+
T Consensus 30 k~~la~~al 38 (175)
T 3lay_A 30 KSAIALIAL 38 (175)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444444444
No 212
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=41.42 E-value=67 Score=27.62 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 250 RRRKQAHLNELETQAGQLR 268 (306)
Q Consensus 250 R~RKk~~l~eLE~qV~~Le 268 (306)
-++|++||.+|..|...++
T Consensus 21 I~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3688999999998877654
No 213
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=40.75 E-value=1e+02 Score=27.31 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~ 279 (306)
+..|..++..|+.++..|..+++
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 214
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=40.73 E-value=16 Score=33.21 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
...+..+.+.+..++..+..||+.|+++|+.|++++
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777788888888888887654
No 215
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.66 E-value=55 Score=31.97 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|.+++..|++++..-...=++|+..|+.++-|
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~k 149 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVD 149 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455555555555544444445555555555443
No 216
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=40.43 E-value=69 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
+..|..+|..|...|-.-++.++.|+.++
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566677777777776666666666554
No 217
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.27 E-value=97 Score=21.95 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKG 277 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~ 277 (306)
..|-.+|.+|..+...|+..
T Consensus 14 ~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 218
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=40.17 E-value=62 Score=26.54 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
.+|..+|..|..++..|.+++..|+.++....
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777776655543
No 219
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=39.39 E-value=16 Score=25.95 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSL 274 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L 274 (306)
..|+..||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888666544
No 220
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=39.28 E-value=2.2e+02 Score=28.20 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=5.5
Q ss_pred HHHHHHHHHhHHH
Q 021874 233 DKRARRMLSNRES 245 (306)
Q Consensus 233 ~KR~RR~lsNRES 245 (306)
.|..-..|+|+.+
T Consensus 105 Le~~l~~lsn~Ts 117 (464)
T 1m1j_B 105 LKDRVAKFSDTST 117 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh
Confidence 3333344444444
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=38.36 E-value=3.3e+02 Score=27.52 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021874 289 AVNNRILKADIETLRAK 305 (306)
Q Consensus 289 ~~ENr~Lraql~~Lrak 305 (306)
..+.+.|+.+|..|+.+
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45667777778777753
No 222
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=38.06 E-value=71 Score=28.10 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
+++..|=..+..|+.+|..|.++++.|+.+....
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888887777776665543
No 223
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=37.76 E-value=62 Score=24.19 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~ 301 (306)
.+.+++..++..|+.|..-...+|.++.--++....++..|..+|..
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45677777888888888877778888777777777666666666554
No 224
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.72 E-value=1.4e+02 Score=23.16 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=4.6
Q ss_pred HhHHHHHHHH
Q 021874 241 SNRESARRSR 250 (306)
Q Consensus 241 sNRESArRSR 250 (306)
.-||+|+.-+
T Consensus 23 gKrEaA~Ee~ 32 (84)
T 1gmj_A 23 GKREQAEEER 32 (84)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHhHHH
Confidence 3345555443
No 225
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=37.64 E-value=1e+02 Score=26.06 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAE 270 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~E 270 (306)
.++++++..++..+..+
T Consensus 88 ~kdlee~r~~l~P~~~e 104 (185)
T 3r2p_A 88 SKDLEEVKAKVQPYLDD 104 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 34444444444444433
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.64 E-value=61 Score=31.44 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
+..|+.++..|+.|+..|+.++..+++++..+..|...|+
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666666666666677777777777766666666654
No 227
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.44 E-value=1.4e+02 Score=29.06 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 274 LLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
|..+...|..++..++.+-..|..++..+
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555554443
No 228
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.04 E-value=1.3e+02 Score=22.52 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
+-|...+..+..||.++.+++.+......+...|-.-...|..|-...+.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888888887777777777666677776655543
No 229
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=36.90 E-value=66 Score=26.26 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
+.+.+|+.+|+.++..|..|+.-.....+++..+.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888777776666665543
No 230
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.90 E-value=1.1e+02 Score=27.77 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
.|+....+.+.++....+-++++.+++++|..+.-|
T Consensus 186 ~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 186 DLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 445555566666666666667777777777665443
No 231
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=36.16 E-value=1.4e+02 Score=22.60 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 021874 288 SAVNNRILKADIETLR 303 (306)
Q Consensus 288 l~~ENr~Lraql~~Lr 303 (306)
|+.+++.++.-+..|.
T Consensus 43 Le~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 43 LEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHH
Confidence 3444444444444444
No 232
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.64 E-value=1.5e+02 Score=26.27 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
|..+++....|+..|+.++..++++.
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444444444444333
No 233
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=35.47 E-value=74 Score=23.73 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 251 ~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
..|...+.+||..+..-..++..|+.++..++
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888877766443
No 234
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=35.06 E-value=87 Score=20.02 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 274 LLKGLTDVNQKYDESAVNNRILK 296 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lr 296 (306)
|++++..|+++...+.-|-..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334433343
No 235
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.68 E-value=1.3e+02 Score=21.80 Aligned_cols=20 Identities=5% Similarity=0.200 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 285 YDESAVNNRILKADIETLRA 304 (306)
Q Consensus 285 ~~~l~~ENr~Lraql~~Lra 304 (306)
+.....|...|+-+|+.|+.
T Consensus 51 l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554443
No 236
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.68 E-value=3.5e+02 Score=26.81 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 274 LLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 274 L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
|..+...|..++..++.+-..|..++..+
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555554443
No 237
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=34.17 E-value=1.5e+02 Score=22.49 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 021874 293 RILKADIETL 302 (306)
Q Consensus 293 r~Lraql~~L 302 (306)
..|..+++.|
T Consensus 66 ~dLE~kvesL 75 (86)
T 3swk_A 66 LDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 238
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=33.96 E-value=2e+02 Score=24.40 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 263 QAGQLRAEHSSLLKGLT-------DVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 263 qV~~Le~EN~~L~~~l~-------~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|+.|..-.-.|+++|+ +.---|..|..||..++.++.-.|+.
T Consensus 113 MVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 113 MVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 34445544444555544 33455777889999999999877753
No 239
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=33.50 E-value=1.5e+02 Score=24.79 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021874 283 QKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 283 qk~~~l~~ENr~Lraql~~Lrak 305 (306)
..|+....+-+.+..+|..|+.+
T Consensus 46 aeY~aak~~q~~~e~rI~~L~~~ 68 (158)
T 2p4v_A 46 ADYQYNKKRLREIDRRVRYLTKC 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666543
No 240
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.39 E-value=1.9e+02 Score=23.27 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lra 297 (306)
.+.+..+..|......|...+..+..++......|..|..
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~ 104 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555544444444444433
No 241
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.16 E-value=97 Score=19.86 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQ 283 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~q 283 (306)
.||+.+..|..-.++|.+++..|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666665544
No 242
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.13 E-value=1.5e+02 Score=29.39 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 021874 293 RILKADIET 301 (306)
Q Consensus 293 r~Lraql~~ 301 (306)
+.|+.++..
T Consensus 126 ~~l~~~i~~ 134 (501)
T 1wle_A 126 REIRKQLTL 134 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 243
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.44 E-value=41 Score=24.99 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 284 KYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 284 k~~~l~~ENr~Lraql~~Lra 304 (306)
-+..|..++..|+.+++.|+.
T Consensus 58 YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 58 YIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555554
No 244
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.42 E-value=2e+02 Score=27.62 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.|..+...|..++..++.+-..+..++..+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555443
No 245
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=32.38 E-value=1.4e+02 Score=21.56 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
-.|..+|..|+.||..|.+.+++=++.-..|+
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE 44 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888777665444333333
No 246
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=32.35 E-value=3e+02 Score=25.94 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021874 245 SARRSRRRKQAHLNELETQAGQLRA------EH--SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKM 306 (306)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~Le~------EN--~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrakv 306 (306)
-+++.=..|...++.|+..+..-+. +. -.-+.-+.++.+++..+.+.-+.|.++.+.|.+||
T Consensus 320 ~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~ 389 (406)
T 4dyl_A 320 VATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKL 389 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455555667777777766654422 10 11223356777888889999999999999998875
No 247
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.20 E-value=68 Score=22.62 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
..||.-|..|+..|..|.+.+..|.+.+..|+.
T Consensus 20 aklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 456777788888888887777776666555543
No 248
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.74 E-value=1.9e+02 Score=22.82 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~ 287 (306)
+.|+.++..|+.....++.++..+.+.+..
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 249
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=31.46 E-value=1.9e+02 Score=25.29 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l 278 (306)
|-|+-.+.++.++.||.++...+.++..+..++
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554443
No 250
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=31.24 E-value=77 Score=20.85 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~ 279 (306)
....+++|+.+|..|..++.
T Consensus 12 ~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHH
Confidence 34445556666665555543
No 251
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.91 E-value=3.5e+02 Score=26.26 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLT 279 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~ 279 (306)
.+++.|+.+.+.+.+++.
T Consensus 45 ~~~~~l~~~~n~~sk~i~ 62 (455)
T 2dq0_A 45 KEINRLRHERNKIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 252
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.81 E-value=1.8e+02 Score=26.63 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 230 SVDDKRARRMLSNRESARRSRR-RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~-RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
....|+++.-+-++.-==--|+ ==...+.++..+++.|..--..+..+|..|.+.=..|+.+...++.+++-++
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666654333322111111 1135778889999999999999999999999888888888888888887665
No 253
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.75 E-value=72 Score=20.99 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 281 VNQKYDESAVNNRILKADIETLR 303 (306)
Q Consensus 281 L~qk~~~l~~ENr~Lraql~~Lr 303 (306)
|.-+...+..+|..|..++..|+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444445555555554444
No 254
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=30.69 E-value=1.5e+02 Score=29.69 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~Lrak 305 (306)
.|..++..|++++..-...-++||..|+.++-|
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444445555555555443
No 255
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.51 E-value=1.5e+02 Score=27.98 Aligned_cols=10 Identities=10% Similarity=-0.091 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 021874 273 SLLKGLTDVN 282 (306)
Q Consensus 273 ~L~~~l~~L~ 282 (306)
.+..+|..|+
T Consensus 37 ~~~~~i~~l~ 46 (323)
T 1lwu_C 37 VNQQFVTRLQ 46 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 256
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.03 E-value=1.5e+02 Score=28.08 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
..|+.++..++.....|..++..|.
T Consensus 29 ~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 29 QELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333433333333
No 257
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.92 E-value=1.3e+02 Score=29.88 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=0.0
Q ss_pred CChHHHHH
Q 021874 109 VDSDEYRA 116 (306)
Q Consensus 109 ~dp~~y~a 116 (306)
+...-|++
T Consensus 40 ~~~~~~~~ 47 (464)
T 1m1j_B 40 ISGTGYQP 47 (464)
T ss_dssp --------
T ss_pred cCCCCcCC
Confidence 33445554
No 258
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.91 E-value=1.9e+02 Score=22.37 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
..|..+|..|+.|+..|+.++..|+
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666555544
No 259
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=29.47 E-value=2.3e+02 Score=23.50 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021874 284 KYDESAVNNRILKADIETLRAK 305 (306)
Q Consensus 284 k~~~l~~ENr~Lraql~~Lrak 305 (306)
.|+....+-+.+..++..|+.+
T Consensus 47 eY~aak~~q~~~e~ri~~Le~~ 68 (158)
T 1grj_A 47 EYHAAREQQGFCEGRIKDIEAK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566555543
No 260
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.15 E-value=1.2e+02 Score=23.16 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 261 ETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 261 E~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
+..+..|+.+...+..++..++.++
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 261
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=29.14 E-value=3.5e+02 Score=27.49 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=5.3
Q ss_pred ccCCchHHHHH
Q 021874 226 EGLDSVDDKRA 236 (306)
Q Consensus 226 ~~~d~~e~KR~ 236 (306)
..++..+.|++
T Consensus 289 ~ilt~~elkqr 299 (551)
T 2b5u_A 289 DVLSPDQVKQR 299 (551)
T ss_dssp ECCCHHHHHHH
T ss_pred ecCCHHHHHHH
Confidence 34555555443
No 262
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.72 E-value=1.5e+02 Score=29.03 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql 299 (306)
+|.++||.++..|+.....-...|..|+.-+..+..+=.+|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665554443333344444444444444444444333
No 263
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.46 E-value=82 Score=19.34 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGL 278 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l 278 (306)
|..+|..|+.|...|+.++
T Consensus 5 lkdevgelkgevralkdev 23 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHH
Confidence 3444444444444444443
No 264
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.41 E-value=2.3e+02 Score=25.73 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=3.5
Q ss_pred HHHHHHhh
Q 021874 126 CAAVALRT 133 (306)
Q Consensus 126 ~AAva~~r 133 (306)
+....-|.
T Consensus 132 l~~L~p~~ 139 (357)
T 3rrk_A 132 AEKLAALA 139 (357)
T ss_dssp HHHHHHHT
T ss_pred HHHHhhhh
Confidence 44444444
No 265
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.24 E-value=1.8e+02 Score=21.52 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.|.-.-..-...+.+.+.+...++.+...|.+++..|...+..+...=......++
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555555666666666666666666666665555544444443333
No 266
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=27.83 E-value=1.6e+02 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
-...|-.+|.+|+..+..+.+++..|+
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 334556666666666666665555443
No 267
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.63 E-value=1.2e+02 Score=24.46 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSLLKGLTDV 281 (306)
Q Consensus 262 ~qV~~Le~EN~~L~~~l~~L 281 (306)
.++..|..+...|+..+..|
T Consensus 18 ~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 268
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.59 E-value=3.4e+02 Score=24.65 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 021874 256 HLNELETQAGQL 267 (306)
Q Consensus 256 ~l~eLE~qV~~L 267 (306)
+|++|..++.-+
T Consensus 45 ~le~lr~~L~Py 56 (273)
T 3s84_A 45 NLRELQQRLEPY 56 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 269
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.19 E-value=69 Score=31.05 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
++++++.++..+......|..+...|+.+...+..
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 60 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKD 60 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444444444444444444333333
No 270
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.86 E-value=2e+02 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 244 ESARRSRRRKQAHLNELETQAGQ 266 (306)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~ 266 (306)
..|...|.|=..++++|..++..
T Consensus 165 ~~a~~L~~~l~~~~eeLr~~L~p 187 (273)
T 3s84_A 165 KNAEELKARISASAEELRQRLAP 187 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556655666666655543
No 271
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=26.83 E-value=1e+02 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 284 KYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 284 k~~~l~~ENr~Lraql~~Lra 304 (306)
+...|..+|..|..+|+.|..
T Consensus 92 ~~~~l~~~n~~L~~riqeLE~ 112 (118)
T 4ati_A 92 RQKKLEHANRHLLLRVQELEM 112 (118)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888877753
No 272
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.80 E-value=77 Score=21.29 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSL 274 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L 274 (306)
..+..|+.++..|+.|...|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444444
No 273
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.50 E-value=2.5e+02 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l 288 (306)
+.++..+-..++.||..+++++...+.+|...
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~ 67 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAK 67 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666665555443
No 274
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=25.40 E-value=1.4e+02 Score=22.99 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
+.+.+|...|..|+.|..-...+|.++.--|+....++..+..+|.
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~ 53 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGII 53 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4678888888888888888888887777666665555544555443
No 275
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.15 E-value=1.9e+02 Score=22.82 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 021874 262 TQAGQLRAEHSSL 274 (306)
Q Consensus 262 ~qV~~Le~EN~~L 274 (306)
.+..+|+.+-..|
T Consensus 8 ~~~q~l~~~~~~l 20 (133)
T 1fxk_C 8 AQLNIYQSQVELI 20 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 276
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.13 E-value=1.9e+02 Score=23.50 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~ 286 (306)
+++..|+.++..|+.....|...+....+...
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444333
No 277
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.13 E-value=2.6e+02 Score=22.33 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (306)
Q Consensus 256 ~l~eLE~qV~~Le~EN~~L~~~l~~L~ 282 (306)
+++.|..++..|+..-......+.++.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555544444333333333
No 278
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=24.72 E-value=1.5e+02 Score=19.27 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 273 SLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.|+..+..|.+++.-+.-.-..|+..+..|
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555556666665554
No 279
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.46 E-value=1.4e+02 Score=18.84 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021874 258 NELETQAGQLRAEHSSLLKGLTD 280 (306)
Q Consensus 258 ~eLE~qV~~Le~EN~~L~~~l~~ 280 (306)
+.||.+...|+...+.|.++++.
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444444443
No 280
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=24.40 E-value=1.2e+02 Score=23.37 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLKGLTD---VNQKYDESAVNNRILKADIETLRA 304 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~~l~~---L~qk~~~l~~ENr~Lraql~~Lra 304 (306)
|+..+..|+.....|..+|.. +++.|..| -+.|..+++.+|.
T Consensus 10 Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkL---SQsLQvqLE~IRq 54 (79)
T 1tu3_F 10 VEQLMFEEKNKAQRLQTELDVSEQVQRDFVKL---SQTLQVQLERIRQ 54 (79)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 333444444444444444433 33333333 3467777777764
No 281
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.27 E-value=2.2e+02 Score=22.09 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 021874 264 AGQLRAEHSSLLKGLTDVNQKYDESAVN------NRILKADIETLRA 304 (306)
Q Consensus 264 V~~Le~EN~~L~~~l~~L~qk~~~l~~E------Nr~Lraql~~Lra 304 (306)
...|+.+...|..+...|..++..+..+ +..++..|..|..
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~ 49 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT 49 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
No 282
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.21 E-value=1.6e+02 Score=20.18 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 259 eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
+|-+++...-.|...-..++..|+.+...|+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666665555554
No 283
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=23.92 E-value=1.6e+02 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhC
Q 021874 294 ILKADIETLRAKM 306 (306)
Q Consensus 294 ~Lraql~~Lrakv 306 (306)
.++.+++.||.||
T Consensus 147 ~~~~~~eeLr~kL 159 (165)
T 1gs9_A 147 RLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHh
Confidence 4556666666653
No 284
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=23.69 E-value=1.2e+02 Score=26.13 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLR 268 (306)
Q Consensus 255 ~~l~eLE~qV~~Le 268 (306)
+.|++|..++..+.
T Consensus 106 kdlEelr~kL~P~~ 119 (191)
T 1nfn_A 106 ADMEDVCGRLVQYR 119 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHH
Confidence 34444444444433
No 285
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=23.35 E-value=49 Score=26.66 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLR 268 (306)
Q Consensus 255 ~~l~eLE~qV~~Le 268 (306)
.||..|+.++..|+
T Consensus 74 eYIk~Lq~~~~~l~ 87 (118)
T 4ati_A 74 DYIRKLQREQQRAK 87 (118)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555444
No 286
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.32 E-value=1.8e+02 Score=23.47 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~ 285 (306)
+.+.+|...+..|+.|..-...+|.++.--|
T Consensus 25 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLc 55 (106)
T 4e61_A 25 EEIEQYKGTVSTLEIEREFYFNKLRDIEILV 55 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665555555444333
No 287
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.05 E-value=2.4e+02 Score=21.44 Aligned_cols=39 Identities=5% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (306)
Q Consensus 253 Kk~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~E 291 (306)
+...+...+.++..++.+...|..++..+..++..+..+
T Consensus 62 ~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 62 REELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 288
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.95 E-value=61 Score=25.68 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021874 260 LETQAGQLRAEHSSLLK 276 (306)
Q Consensus 260 LE~qV~~Le~EN~~L~~ 276 (306)
|+.+...|+.+...|+.
T Consensus 12 l~~~~~~l~~~i~~lke 28 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLEN 28 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 289
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.89 E-value=2e+02 Score=22.71 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ 290 (306)
+..|..++..|+.+-+.|-..+..+++++..+..
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666776666777777777777666664
No 290
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=22.47 E-value=2.5e+02 Score=21.22 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
..+.++..+++.|..--+.+..+++.+.+.=..|+.+=..+..+++.+
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888877776666666655555555444
No 291
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.34 E-value=2.6e+02 Score=28.06 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (306)
Q Consensus 254 k~~l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~ 300 (306)
.+|.++||.++.-|+.....-...|..|+.-+..+..+=.+|...|.
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777766655444336666666666666666555555543
No 292
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.37 E-value=2.1e+02 Score=19.84 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 021874 272 SSLLKGLTDVN 282 (306)
Q Consensus 272 ~~L~~~l~~L~ 282 (306)
+.|.+-+..|+
T Consensus 27 qnlekiianlr 37 (52)
T 3he5_B 27 QNLEKIIANLR 37 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33333333333
No 293
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.02 E-value=2.2e+02 Score=19.98 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
.||..|..-+.. |+++|..|..+|..|
T Consensus 17 kenaklenivar-------lendnanlekdianl 43 (56)
T 3he4_A 17 KENAKLENIVAR-------LENDNANLEKDIANL 43 (56)
T ss_dssp CHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHH-------HhcccchHHHHHHHH
Confidence 355555444443 444444444444433
No 294
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.99 E-value=2.4e+02 Score=21.42 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~ 289 (306)
++.||..+..+..|...+...+..++.+.+.|+
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 455666666666666666666666665555554
No 295
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.94 E-value=2.1e+02 Score=19.59 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.2
Q ss_pred HHHHHH
Q 021874 295 LKADIE 300 (306)
Q Consensus 295 Lraql~ 300 (306)
|+..++
T Consensus 39 lksklq 44 (48)
T 1g6u_A 39 LKSKLQ 44 (48)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 296
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.43 E-value=3.2e+02 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021874 255 AHLNELETQAGQLRAEHSSLL 275 (306)
Q Consensus 255 ~~l~eLE~qV~~Le~EN~~L~ 275 (306)
+|++.|+.++++|..+...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776666664
No 297
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.31 E-value=1.7e+02 Score=28.22 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 275 LKGLTDVNQKYDESAVNNRILKADIETL 302 (306)
Q Consensus 275 ~~~l~~L~qk~~~l~~ENr~Lraql~~L 302 (306)
..+...|..++..++.+-..+..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555554443
No 298
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.24 E-value=82 Score=31.67 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021874 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (306)
Q Consensus 257 l~eLE~qV~~Le~EN~~L~~~l~~L~qk~~~l~~ENr~Lraq 298 (306)
..+|+.++.+++.+.......|....+....|..+.++...+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e 378 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAA 378 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466777777777777666666655554444444444444333
Done!