BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021875
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 13 LPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFS 72
L K RKPYTITKQRE+WTE+EH+RFL+AL++YGR W++IEEH+GTKTAVQIRSHAQKFF+
Sbjct: 11 LAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFT 70
Query: 73 KVVRES--NGSSESSIMPIEIPPPRPKRKPVHPYPRK 107
K+ +E+ G + IEIPPPRPKRKP PYPRK
Sbjct: 71 KLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRK 107
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 76/107 (71%), Gaps = 8/107 (7%)
Query: 2 SNSLYSFENDSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAV 61
SN SF D KVRKPYTITK RE WTE+EH +FL+AL ++ R W++I+ VG+KT +
Sbjct: 37 SNRTMSFFEDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVI 96
Query: 62 QIRSHAQKFFSKVVRESNGSSESSIMPIEIPPPRPKRKPVHPYPRKS 108
QIRSHAQK+F KV + NG+ E +PPPRPKRK HPYP+K+
Sbjct: 97 QIRSHAQKYFLKV--QKNGTKE------HLPPPRPKRKANHPYPQKA 135
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 100/135 (74%), Gaps = 8/135 (5%)
Query: 11 DSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKF 70
D + K RKPYTITKQRE+WTEEEH RF++AL++YGR W++IEEHV TKTAVQIRSHAQKF
Sbjct: 9 DLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKF 68
Query: 71 FSKVVRESN--GSSESSIMPIEIPPPRPKRKPVHPYPRKSVDS---LKATSVSNQQENFT 125
FSKV +E+ G + + I IPPPRPKRKP +PYPRK+ + T V++ +E+
Sbjct: 69 FSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGSGTILMSKTGVNDGKESLG 128
Query: 126 S---SNALVSDKDRQ 137
S S+ ++++DRQ
Sbjct: 129 SEKVSHPEMANEDRQ 143
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 69/93 (74%), Gaps = 8/93 (8%)
Query: 15 KVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKV 74
K RKPYTI+KQRE WT+EEHQ+FL+AL ++ R W++IE VG+KT +QIRSHAQK+F KV
Sbjct: 30 KSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKV 89
Query: 75 VRESNGSSESSIMPIEIPPPRPKRKPVHPYPRK 107
+ + G IPPPRPKRK + PYP+K
Sbjct: 90 QKNNTGE--------RIPPPRPKRKSIQPYPQK 114
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 23 TKQREKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFSKVVRES 78
T ++ WT+EEH RFL+ ++++G+G W++I + VGT+T QI+SHAQK++ + +E+
Sbjct: 373 TSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYLRQKQET 429
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNG 80
R WT+EE + F++A K+Y + ++I+EHV TKT +Q+RSHAQKF K+ E NG
Sbjct: 150 RSSWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKL--EKNG 202
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 29 WTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSESSIM 87
W+ EEH+ FL A++ YGRG W+ I + ++ +QI++HA+ +F K+ +++ S+ +I+
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKISQQNGPPSKKTII 291
Query: 88 PIE 90
+E
Sbjct: 292 EVE 294
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 24 KQREKWTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSS 82
KQ WT EEH RF++AL YG + + I ++V T+ Q+R+HAQK+F ++ RE
Sbjct: 170 KQSRYWTPEEHSRFIEALSKYGHKDVKSISQYVSTRNPTQVRTHAQKYFLRIDRERGRKL 229
Query: 83 ES 84
ES
Sbjct: 230 ES 231
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 29 WTEEEHQRFLDALKMYGRG-WRQIEEH-VGTKTAVQIRSHAQKFFSKVVRESNGSSESSI 86
WTEEEH+ FL LK YG+G WR I + V T+T Q+ SHAQK+F + + +SI
Sbjct: 134 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASI 193
Query: 87 MPI--------EIPPPRPKRKPVHP 103
I + P P K+ P P
Sbjct: 194 HDITTVNLSDNQTPSPDNKKPPSSP 218
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 15 KVRKPYTITKQRE-KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFF-- 71
KV+KP + + +W EEE + F L +GR W +I + +GT+T +Q++S+A+++F
Sbjct: 87 KVKKPLVKSSAAQTRWAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSYAKQYFKN 146
Query: 72 ------SKVVRESNGSSESSIMP 88
+ V +N +S SSI P
Sbjct: 147 KPKAEPAAEVTSANVTSVSSIQP 169
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 24 KQREKWTEEEHQRFLDALKMYGRG-WRQIEEH-VGTKTAVQIRSHAQKFF 71
K+ WTEEEH+ FL L+ G+G WR I + V T+T Q+ SHAQK+F
Sbjct: 92 KRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 141
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 9 ENDSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQ 68
E + +VR P + KWT+EE F L +GR W I +G+++ +Q++++A+
Sbjct: 92 EKQCIKRVRSPAKASSSPVKWTKEEKNLFEQGLATFGRRWTSIARLIGSRSVLQVKNYAR 151
Query: 69 KFF-SKVVRESNGSSESSIMPIEIP 92
+F +K E E+ I ++IP
Sbjct: 152 HYFKNKCKLEGFVKEEAKIGSLQIP 176
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 16 VRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75
VR P KWT EE + F L YGR W +I + +G++T +Q++S+A+++F
Sbjct: 109 VRSPTKPGSYSLKWTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKSYARQYFKNKA 168
Query: 76 RESNGSSE 83
+ E
Sbjct: 169 KNDGSERE 176
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
KWT EE + F L +GR W +I + +G++T +Q++S+A+++F V+
Sbjct: 120 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 168
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
KWT EE + F L +GR W +I + ++T +Q++S+A+++F V+
Sbjct: 117 KWTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKSYARQYFKNKVK 165
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 27 EKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSH 66
+ WT++E L+A+++Y W QI +HVG+K+ Q H
Sbjct: 401 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILH 440
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 29 WTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSH 66
W +E L+ ++MYG G W ++ EHVGTKT Q H
Sbjct: 111 WNADEEILLLEGIEMYGLGNWAEVAEHVGTKTKAQCIDH 149
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIRSHAQKFF 71
WT EEH +FL+A++ +G + + I + V T+ Q+R+H +
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAKFVQTRNHHQVRTHVNTYL 700
>sp|Q8CFE3|RCOR1_MOUSE REST corepressor 1 OS=Mus musculus GN=Rcor1 PE=1 SV=2
Length = 477
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 17 RKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
R P I K +WT EE + A++ YGR ++ I + +G K+ VQ+++ FF R
Sbjct: 365 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 420
Query: 77 ESN 79
N
Sbjct: 421 RFN 423
>sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1
Length = 482
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 17 RKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
R P I K +WT EE + A++ YGR ++ I + +G K+ VQ+++ FF R
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 426
Query: 77 ESN 79
N
Sbjct: 427 RFN 429
>sp|Q55GK3|MYBM_DICDI Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1
Length = 669
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 22 ITKQREKWTEEEHQRFLDALKMYG-RGWRQIE-EHVGTKTAVQIRSHAQKFFSKVVRES 78
I + KWTEEE Q+ + +YG + W++I E G KT Q H ++ S +R+
Sbjct: 63 IRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKG 121
>sp|Q54K19|MYBD_DICDI Myb-like protein D OS=Dictyostelium discoideum GN=mybD PE=3 SV=1
Length = 595
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 29 WTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQ 68
WT+EE ++ YG+ W+ I H KT Q++SH Q
Sbjct: 443 WTQEEDEKMAQLYNKYGKSWKAIHSHFDDKTREQVQSHGQ 482
>sp|Q54YB7|MYBF_DICDI Myb-like protein F OS=Dictyostelium discoideum GN=mybF PE=3 SV=1
Length = 564
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQ 68
R WT EE + + + YG+ W++I+ H K+ Q+ SH Q
Sbjct: 414 RTVWTLEEEELYKEVFNHYGKNWKKIKTHFPDKSKSQVTSHGQ 456
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 29 WTEEEHQRFLDALKMY------GRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
WT EE ++ L Y R W++I + +G +TA Q+ S QK+F K+ +
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTK 708
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 38.1 bits (87), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 29 WTEEEHQRFLDALKMY------GRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76
WT EE ++ L Y R W++I + +G +TA Q+ S QK+F K+ +
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTK 715
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 29 WTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFF 71
W+ ++ L+ L++YG G W ++ EHVGTK+ Q H + +
Sbjct: 105 WSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIY 148
>sp|Q90WN5|RCOR1_XENLA REST corepressor 1 OS=Xenopus laevis GN=rcor1 PE=2 SV=1
Length = 431
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESN 79
+WT EE + A++MYGR ++ I + +G K+ VQ+++ FF R N
Sbjct: 331 RWTTEEQLLAVQAIRMYGRDFQAISDVIGNKSVVQVKN----FFVNYRRRFN 378
>sp|Q8BXN7|PPM1K_MOUSE Protein phosphatase 1K, mitochondrial OS=Mus musculus GN=Ppm1k PE=1
SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 20/127 (15%)
Query: 88 PIEIPPPRPKRKPVHPYPRKSVDSLKATS-VSNQQENFTSSNALVSDKDRQSPTSVVSAF 146
PI +PP KP+ P+ S++++ S + ++EN +DR +
Sbjct: 74 PILLPPSIKYGKPI---PKISLENVGCASLIGKRKEN----------EDRFG----FAQL 116
Query: 147 NSDTLGCAASDQQNGCSSPTSCTTEMHS--VNLLPIEKENEYVTSISFPKEEKISTLPAH 204
+ L A D G ++ C T M ++LLP EK+ E V +++F + +K AH
Sbjct: 117 TEEVLYFAVYDGHGGPAAADFCHTHMEKCVMDLLPREKDLETVLTLAFLEIDKAFASYAH 176
Query: 205 LSASSNV 211
LSA +++
Sbjct: 177 LSADASL 183
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 21 TITKQREKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIR-SHAQKFFSKVV 75
++ + + WT E R LDA++ YG G W I +H+ TK+A + + KF + +
Sbjct: 66 SVFRGKGAWTAREEIRLLDAIEQYGFGNWEDISKHIETKSAEDAKEEYVNKFVNGTI 122
>sp|B0G0Y5|MYBAA_DICDI Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1
Length = 971
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 25 QREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSH 66
+R+ WT EE + LDA YG W +I + + +T I++H
Sbjct: 808 KRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNH 849
>sp|B6MUN4|MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1
PE=3 SV=1
Length = 809
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 37 FLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFF-SKVVR------------ESNGSSE 83
F ++YGR W I + V T+T +Q++++A+ FF +KVV+ E S E
Sbjct: 40 FDHGQEIYGRSWTSISQFVQTRTPLQVKNYARHFFKTKVVQKVEEGEDEDVDIEGEESGE 99
Query: 84 SSIMPIEIPPPRPKRKPVHPYPRKSVDSLKATSVSNQQENFT----SSNALVSDKDRQSP 139
++M + P P S D+ +V + E T S + LV D DR+ P
Sbjct: 100 EAVMELR---STCGLNPAQPAVVTSDDTSTGENVMEETEAVTEDHPSLDNLVQD-DREMP 155
>sp|Q8IZ40|RCOR2_HUMAN REST corepressor 2 OS=Homo sapiens GN=RCOR2 PE=1 SV=2
Length = 523
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 16 VRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75
+R P TK +WT +E + A++ YG+ + I E +G KT Q+++ FF
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSYR 374
Query: 76 RESN 79
R N
Sbjct: 375 RRFN 378
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1
SV=2
Length = 802
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSESSIM 87
+W+ EE ++ L K+ WR I +G +TA Q H + K + N E++
Sbjct: 62 EWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKTAQRDN-EEETTDD 119
Query: 88 PIEIPP----PRPKRKPVHPYP 105
P ++ P P P+ KP P P
Sbjct: 120 PRKLKPGEIDPNPETKPARPDP 141
>sp|O08837|CDC5L_RAT Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l
PE=1 SV=2
Length = 802
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSESSIM 87
+W+ EE ++ L K+ WR I +G +TA Q H + K + N E++
Sbjct: 62 EWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKTAQRDN-EEETTDD 119
Query: 88 PIEIPP----PRPKRKPVHPYP 105
P ++ P P P+ KP P P
Sbjct: 120 PRKLKPGEIDPNPETKPARPDP 141
>sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 16 VRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75
+R P TK +WT +E + A++ YG+ + I E +G KT Q+++ FF
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSYR 374
Query: 76 RESN 79
R N
Sbjct: 375 RRFN 378
>sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rcor2 PE=2 SV=1
Length = 503
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 1 MSNSLYSFENDSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTA 60
M++SL + ++R P K +WT +E + A++ YG+ ++ I E +G KT
Sbjct: 304 MNSSLKESLEGGISEMRPPELNIKLNARWTTDEQLLAVQAVRKYGKDFQAISEVLGNKTP 363
Query: 61 VQIR----SHAQKF-FSKVVRESNGSSESSIMPIEIPPP 94
Q++ S+ ++F +V++E E S PPP
Sbjct: 364 SQVKTFFISYRRRFNLEEVLQEWEAEQEPS------PPP 396
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 29 WTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSH 66
W+ +E L+A++ YG W QI HVG++T Q H
Sbjct: 250 WSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIH 287
>sp|Q2KJC1|CDC5L_BOVIN Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1
Length = 802
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSESSIM 87
+W+ EE ++ L K+ WR I +G +TA Q H + K + N E++
Sbjct: 62 EWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDN-EEETTDD 119
Query: 88 PIEIPP----PRPKRKPVHPYP 105
P ++ P P P+ KP P P
Sbjct: 120 PRKLKPGEIDPNPETKPARPDP 141
>sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 16 VRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVV 75
+R P TK +WT +E + A++ YG+ + I E +G KT Q+++ FF
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSYR 374
Query: 76 RESN 79
R N
Sbjct: 375 RRFN 378
>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1
SV=2
Length = 802
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNGSSESSIM 87
+W+ EE ++ L K+ WR I +G +TA Q H + K + N E++
Sbjct: 62 EWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDN-EEETTDD 119
Query: 88 PIEIPP----PRPKRKPVHPYP 105
P ++ P P P+ KP P P
Sbjct: 120 PRKLKPGEIDPNPETKPARPDP 141
>sp|Q2PC20|PPM1K_BOVIN Protein phosphatase 1K, mitochondrial OS=Bos taurus GN=PPM1K PE=2
SV=1
Length = 372
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 88 PIEIPPPRPKRKPVHPYPRKSVDSLKATSVSNQQENFTSSNALVSDKDRQSPTSVVSAFN 147
PI +PP KP+ ++V S A+ + ++EN +DR +
Sbjct: 74 PILLPPSIKYGKPIPKVSLQNVGS--ASQIGKRKEN----------EDRFG----FAQLT 117
Query: 148 SDTLGCAASDQQNGCSSPTSCTTEMHS--VNLLPIEKENEYVTSISFPKEEKISTLPAHL 205
++ L A D G ++ C T M ++LLP E+ E V +++F + +K AHL
Sbjct: 118 NEVLYFAVYDGHGGPAAADFCHTHMEKCILDLLPKEENLETVLTLAFLEIDKTFARHAHL 177
Query: 206 SASSNV 211
SA + +
Sbjct: 178 SADATL 183
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1
PE=1 SV=2
Length = 743
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 23 TKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESN 79
T+Q WT +E + F AL+ G+ + +I V +K Q+R ++ ++VR N
Sbjct: 52 TRQWAAWTHQEEESFFTALRQVGKNFEKITSRVQSKNKDQVR----HYYYRLVRRMN 104
>sp|P22035|BAS1_YEAST Myb-like DNA-binding protein BAS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BAS1 PE=1 SV=1
Length = 811
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 15 KVRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKV 74
+V P + + RE WT EE + +K YG WR+I + + ++ R+ +K + V
Sbjct: 159 EVLGPGSKGRLRE-WTLEEDLNLISKVKAYGTKWRKISSEMEFRPSLTCRNRWRKIITMV 217
Query: 75 VR 76
VR
Sbjct: 218 VR 219
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1
SV=1
Length = 548
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 29 WTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSH 66
W +E L+A+ YG G W+++ +HVG+KT + H
Sbjct: 111 WNADEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKH 149
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 25 QREKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIR 64
++ +W+ EE Q ++A+ YG+G W I+ HV +T VQ R
Sbjct: 651 KKGRWSPEEDQCLINAVNAYGKGNWILIKNHVKGRTDVQCR 691
>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1
Length = 2453
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRS 65
+WTEEE + L +GR W I + VGTK+ Q ++
Sbjct: 626 RWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKN 663
>sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2
Length = 2440
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRS 65
+WTEEE + L +GR W I + VGTK+ Q ++
Sbjct: 627 RWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKN 664
>sp|P34127|MYBA_DICDI Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2
Length = 1230
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 29 WTEEEHQRFLDALKMYG-RGWRQIEEHVGTKTAVQIRSHAQKFF 71
WT EE Q + A+ ++ + W++I EH +T VQ QK
Sbjct: 152 WTSEEDQILIKAVNLHNQKNWKKIAEHFPDRTDVQCHHRYQKVL 195
>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
Length = 2525
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRS 65
+WTEEE + L +GR W I VG+KT Q ++
Sbjct: 614 RWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKN 651
>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3
Length = 2472
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 28 KWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRS 65
+WTEEE + L +GR W I VG+KT Q ++
Sbjct: 610 RWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKN 647
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 2 SNSLYSFENDSLPKVRKPYTITKQREKWTEEEHQRFLDALKMYG 45
N + + E K RKP R WTEE HQ+FL+A+++ G
Sbjct: 199 GNGIQNMEKKQGKKPRKP------RMTWTEELHQKFLEAIEIIG 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,820,225
Number of Sequences: 539616
Number of extensions: 4293780
Number of successful extensions: 13013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 12594
Number of HSP's gapped (non-prelim): 489
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)