Query 021875
Match_columns 306
No_of_seqs 196 out of 696
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 10:36:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021875.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021875hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x41a1 a.4.1.1 (A:8-54) Trans 99.6 2.9E-16 2.1E-20 109.2 6.2 45 27-71 2-47 (47)
2 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 99.6 7.2E-16 5.3E-20 111.8 8.0 51 27-77 3-53 (65)
3 d1guua_ a.4.1.3 (A:) c-Myb, DN 99.5 3E-14 2.2E-18 99.6 6.5 47 26-72 1-48 (50)
4 d1irza_ a.4.1.11 (A:) Arr10-B 99.5 4.5E-14 3.3E-18 104.8 7.0 54 24-77 5-63 (64)
5 d1gvda_ a.4.1.3 (A:) c-Myb, DN 99.4 2.8E-14 2E-18 100.9 4.8 48 25-72 2-50 (52)
6 d2iw5b1 a.4.1.3 (B:376-440) RE 99.4 5.7E-14 4.1E-18 102.1 5.2 50 24-73 3-52 (65)
7 d2cjja1 a.4.1.3 (A:8-70) Radia 99.4 2.1E-13 1.5E-17 99.0 7.6 54 27-80 2-59 (63)
8 d1xc5a1 a.4.1.3 (A:413-480) Nu 99.4 1.5E-13 1.1E-17 100.8 5.7 54 16-69 7-60 (68)
9 d1gv2a2 a.4.1.3 (A:144-190) c- 99.4 1.7E-13 1.2E-17 95.3 5.2 46 26-71 1-46 (47)
10 d2cqra1 a.4.1.3 (A:7-66) DnaJ 99.3 1.6E-12 1.2E-16 93.3 6.4 46 24-69 10-59 (60)
11 d1w0ta_ a.4.1.4 (A:) DNA-bindi 99.2 6.6E-12 4.8E-16 88.3 6.8 45 26-70 2-49 (52)
12 d1w0ua_ a.4.1.4 (A:) Telomeric 99.2 1E-11 7.5E-16 88.1 7.1 47 26-72 2-51 (55)
13 d1igna1 a.4.1.6 (A:360-445) DN 99.1 7.7E-12 5.6E-16 96.6 3.7 48 26-73 1-54 (86)
14 d2crga1 a.4.1.3 (A:8-64) Metas 99.1 9.2E-11 6.7E-15 84.0 6.1 42 27-68 2-44 (57)
15 d2ckxa1 a.4.1.3 (A:578-660) Te 98.9 9E-10 6.6E-14 83.6 6.8 46 28-73 2-52 (83)
16 d1ug2a_ a.4.1.3 (A:) 2610100b2 98.6 3.1E-08 2.2E-12 78.2 7.3 52 25-76 32-86 (95)
17 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 98.5 8E-08 5.8E-12 69.7 6.7 43 27-70 2-48 (59)
18 d1ofcx1 a.4.1.3 (X:799-850) SA 97.6 5.9E-05 4.3E-09 53.3 5.7 47 28-74 1-48 (52)
19 d1wgxa_ a.4.1.3 (A:) Hypotheti 96.7 0.0019 1.4E-07 48.2 6.5 43 24-66 6-52 (73)
20 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 95.3 0.0088 6.4E-07 42.6 4.4 46 26-71 2-57 (59)
21 d1x58a1 a.4.1.1 (A:8-56) Hypot 94.1 0.05 3.6E-06 37.4 5.6 40 26-65 1-43 (49)
22 d1kkxa_ a.4.3.1 (A:) Transcrip 89.5 0.31 2.3E-05 36.7 5.8 33 48-80 58-90 (102)
23 d1ofcx2 a.4.1.13 (X:851-978) S 86.3 1.2 9E-05 35.4 7.8 51 28-78 51-117 (128)
24 d1ig6a_ a.4.3.1 (A:) MRF-2 DNA 86.2 0.18 1.3E-05 38.2 2.6 57 36-97 37-106 (107)
25 d1c20a_ a.4.3.1 (A:) DNA-bindi 61.6 7.2 0.00052 29.8 5.8 31 48-78 76-111 (128)
26 d1ryua_ a.4.3.1 (A:) SWI-SNF c 55.9 4 0.00029 31.1 3.3 30 48-77 74-107 (120)
27 d1g2ha_ a.4.1.12 (A:) Transcri 52.0 9 0.00065 25.9 4.3 39 29-77 18-57 (61)
28 d2cyya1 a.4.5.32 (A:5-64) Puta 47.0 21 0.0015 23.4 5.5 38 32-70 3-41 (60)
29 d1i1ga1 a.4.5.32 (A:2-61) LprA 44.6 26 0.0019 23.0 5.7 38 32-70 3-41 (60)
30 d2cg4a1 a.4.5.32 (A:4-66) Regu 44.4 21 0.0015 23.6 5.3 37 32-69 5-42 (63)
31 d1jhfa1 a.4.5.2 (A:2-72) LexA 42.3 21 0.0015 24.4 5.1 40 34-77 7-52 (71)
32 d2cfxa1 a.4.5.32 (A:1-63) Tran 39.4 32 0.0023 22.8 5.6 38 32-70 5-43 (63)
33 d1fs1b1 a.157.1.1 (B:86-140) C 36.0 11 0.0008 25.4 2.6 19 48-66 35-53 (55)
34 d1ntca_ a.4.1.12 (A:) DNA-bind 26.9 24 0.0018 24.7 3.3 27 33-59 52-79 (91)
35 d1nexa1 a.157.1.1 (A:116-185) 25.9 23 0.0017 24.6 2.9 19 48-66 36-54 (70)
36 d1rp3a2 a.4.13.2 (A:164-234) S 20.7 1E+02 0.0073 19.6 6.2 33 43-76 35-67 (71)
No 1
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61 E-value=2.9e-16 Score=109.23 Aligned_cols=45 Identities=31% Similarity=0.629 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHH
Q 021875 27 EKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFF 71 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF 71 (306)
..||.||+.+|+++|++||.+ |..||++||+||+.|||.||++||
T Consensus 2 ~~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f 47 (47)
T d1x41a1 2 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 47 (47)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 359999999999999999986 999999999999999999999998
No 2
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61 E-value=7.2e-16 Score=111.76 Aligned_cols=51 Identities=35% Similarity=0.728 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 021875 27 EKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
..||+||+.+|+++|.+||.+|..||.+|++||+.||++||++||.+..+.
T Consensus 3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~ 53 (65)
T d2cu7a1 3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53 (65)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999999886543
No 3
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.47 E-value=3e-14 Score=99.57 Aligned_cols=47 Identities=26% Similarity=0.544 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHH
Q 021875 26 REKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
++.||.||+++|++++++||.+ |..||.+|++||+.||+.||++|+.
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (50)
T d1guua_ 1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48 (50)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999975 9999999999999999999999974
No 4
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.46 E-value=4.5e-14 Score=104.81 Aligned_cols=54 Identities=33% Similarity=0.460 Sum_probs=47.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcch---HHHHHH--hCCCCHHHHHHHHHHHHHHHHHh
Q 021875 24 KQREKWTEEEHQRFLDALKMYGRGW---RQIEEH--VGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgW---k~IAe~--VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
+.|-.||+|||++|++||+.||.+| +.|.++ |+++|..||+||+||||.++.+.
T Consensus 5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~ 63 (64)
T d1irza_ 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999996 678776 56789999999999999998764
No 5
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.45 E-value=2.8e-14 Score=100.89 Aligned_cols=48 Identities=27% Similarity=0.578 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHH
Q 021875 25 QREKWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~ 72 (306)
.+++||.||+++|++++++||.+ |..||++|++||+.||+.||++|+.
T Consensus 2 ~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~ 50 (52)
T d1gvda_ 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999965 9999999999999999999999864
No 6
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.42 E-value=5.7e-14 Score=102.12 Aligned_cols=50 Identities=28% Similarity=0.601 Sum_probs=46.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHHHH
Q 021875 24 KQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~k 73 (306)
+.+..||+||+.+|+++|..||++|..||.+||+||+.||+.||.+|..+
T Consensus 3 k~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~ 52 (65)
T d2iw5b1 3 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52 (65)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 45688999999999999999999999999999999999999999887544
No 7
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=99.41 E-value=2.1e-13 Score=99.00 Aligned_cols=54 Identities=20% Similarity=0.526 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHhCcc----hHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhCC
Q 021875 27 EKWTEEEHQRFLDALKMYGRG----WRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNG 80 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGrg----Wk~IAe~VgTRT~~QVRSHaQKYF~kl~r~~~g 80 (306)
..||.||+.+|++||+.||.+ |.+||.+|++||+.||+.||++....+++...|
T Consensus 2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~iesg 59 (63)
T d2cjja1 2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 59 (63)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccccC
Confidence 479999999999999999985 999999999999999999998777667766555
No 8
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.39 E-value=1.5e-13 Score=100.77 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHH
Q 021875 16 VRKPYTITKQREKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQK 69 (306)
Q Consensus 16 ~RKPytitk~r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQK 69 (306)
+.+.+...+....||.||+.+|++|+.+||++|..||++|++||..||+.||..
T Consensus 7 p~~~~~~~~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~ 60 (68)
T d1xc5a1 7 PMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 60 (68)
T ss_dssp CCTTTTSTTTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHH
T ss_pred hHHHHccccCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 333344445668899999999999999999999999999999999999998653
No 9
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.38 E-value=1.7e-13 Score=95.26 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHHhCCCCHHHHHHHHHHHH
Q 021875 26 REKWTEEEHQRFLDALKMYGRGWRQIEEHVGTKTAVQIRSHAQKFF 71 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrgWk~IAe~VgTRT~~QVRSHaQKYF 71 (306)
+..||.||+++|++++++||..|..||.+|++||..|||+||..++
T Consensus 1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~l 46 (47)
T d1gv2a2 1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46 (47)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999999999998764
No 10
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.30 E-value=1.6e-12 Score=93.27 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=42.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc----hHHHHHHhCCCCHHHHHHHHHH
Q 021875 24 KQREKWTEEEHQRFLDALKMYGRG----WRQIEEHVGTKTAVQIRSHAQK 69 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGrg----Wk~IAe~VgTRT~~QVRSHaQK 69 (306)
..+..||.||+.+|++||..||.+ |..||++||+||+.||+.||+.
T Consensus 10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~ 59 (60)
T d2cqra1 10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 59 (60)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence 355789999999999999999974 9999999999999999999973
No 11
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.24 E-value=6.6e-12 Score=88.35 Aligned_cols=45 Identities=27% Similarity=0.622 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHHHh--CCCCHHHHHHHHHHH
Q 021875 26 REKWTEEEHQRFLDALKMYGRG-WRQIEEHV--GTKTAVQIRSHAQKF 70 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~V--gTRT~~QVRSHaQKY 70 (306)
+..||.||+++|+++|++||.+ |..|++.+ ++||..||+.+|.++
T Consensus 2 r~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl 49 (52)
T d1w0ta_ 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 5789999999999999999986 99999874 489999999999875
No 12
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.22 E-value=1e-11 Score=88.14 Aligned_cols=47 Identities=30% Similarity=0.584 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHHH--hCCCCHHHHHHHHHHHHH
Q 021875 26 REKWTEEEHQRFLDALKMYGRG-WRQIEEH--VGTKTAVQIRSHAQKFFS 72 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg-Wk~IAe~--VgTRT~~QVRSHaQKYF~ 72 (306)
+..||.||+++|+++|++||.+ |..||+. +++||+.||+.+|+++..
T Consensus 2 r~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k 51 (55)
T d1w0ua_ 2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51 (55)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence 5689999999999999999975 9999987 459999999999987643
No 13
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.15 E-value=7.7e-12 Score=96.61 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc------hHHHHHHhCCCCHHHHHHHHHHHHHH
Q 021875 26 REKWTEEEHQRFLDALKMYGRG------WRQIEEHVGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrg------Wk~IAe~VgTRT~~QVRSHaQKYF~k 73 (306)
++.||.||+++|++++.+||.. |..||.+|++||..|||.||.+|+.+
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p 54 (86)
T d1igna1 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 54 (86)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999974 99999999999999999999999876
No 14
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.07 E-value=9.2e-11 Score=83.99 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHH-HhCCCCHHHHHHHHH
Q 021875 27 EKWTEEEHQRFLDALKMYGRGWRQIEE-HVGTKTAVQIRSHAQ 68 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGrgWk~IAe-~VgTRT~~QVRSHaQ 68 (306)
..||+||+.+|++||.+||++|..|++ +|++||..||..||-
T Consensus 2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY 44 (57)
T d2crga1 2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 44 (57)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHH
Confidence 579999999999999999999999997 589999999999863
No 15
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=98.92 E-value=9e-10 Score=83.57 Aligned_cols=46 Identities=17% Similarity=0.475 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCcc-hHHHHHH----hCCCCHHHHHHHHHHHHHH
Q 021875 28 KWTEEEHQRFLDALKMYGRG-WRQIEEH----VGTKTAVQIRSHAQKFFSK 73 (306)
Q Consensus 28 ~WT~EEh~lFLEaLe~yGrg-Wk~IAe~----VgTRT~~QVRSHaQKYF~k 73 (306)
+||.||+++|+++|++||.+ |..|++. +.+||+.||+.+|.+|+..
T Consensus 2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~ 52 (83)
T d2ckxa1 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhh
Confidence 69999999999999999986 9999975 5689999999999998754
No 16
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.63 E-value=3.1e-08 Score=78.21 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc---hHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 021875 25 QREKWTEEEHQRFLDALKMYGRG---WRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 25 ~r~~WT~EEh~lFLEaLe~yGrg---Wk~IAe~VgTRT~~QVRSHaQKYF~kl~r 76 (306)
....||.|||+.+|+.++++|.. |..||..+++||..|||.||+..+.-..+
T Consensus 32 ~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~ 86 (95)
T d1ug2a_ 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999965 99999999999999999999855444433
No 17
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.53 E-value=8e-08 Score=69.69 Aligned_cols=43 Identities=19% Similarity=0.594 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcc----hHHHHHHhCCCCHHHHHHHHHHH
Q 021875 27 EKWTEEEHQRFLDALKMYGRG----WRQIEEHVGTKTAVQIRSHAQKF 70 (306)
Q Consensus 27 ~~WT~EEh~lFLEaLe~yGrg----Wk~IAe~VgTRT~~QVRSHaQKY 70 (306)
..||.||..+|.+||.+|..+ |.+||++| +||..||..||+..
T Consensus 2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l 48 (59)
T d2cqqa1 2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 48 (59)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 579999999999999999765 99999999 69999999988654
No 18
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=97.56 E-value=5.9e-05 Score=53.32 Aligned_cols=47 Identities=26% Similarity=0.518 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 021875 28 KWTEEEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKFFSKV 74 (306)
Q Consensus 28 ~WT~EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKYF~kl 74 (306)
.|+..|=..|+.|+++||++ -..||..|.+||..+|+.++.-|+.+.
T Consensus 1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~ry 48 (52)
T d1ofcx1 1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 48 (52)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 49999999999999999997 999999999999999999998887764
No 19
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.68 E-value=0.0019 Score=48.17 Aligned_cols=43 Identities=21% Similarity=0.540 Sum_probs=38.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc---c-hHHHHHHhCCCCHHHHHHH
Q 021875 24 KQREKWTEEEHQRFLDALKMYGR---G-WRQIEEHVGTKTAVQIRSH 66 (306)
Q Consensus 24 k~r~~WT~EEh~lFLEaLe~yGr---g-Wk~IAe~VgTRT~~QVRSH 66 (306)
...+.|+++|-.+|-.||.-..+ + |.++|..|||||+..|.--
T Consensus 6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~k 52 (73)
T d1wgxa_ 6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRK 52 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHH
Confidence 46689999999999999998865 3 9999999999999999863
No 20
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.34 E-value=0.0088 Score=42.56 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------Ccc-hHHHHH-HhCCCCHHHHHHHHHHHH
Q 021875 26 REKWTEEEHQRFLDALKMY--------GRG-WRQIEE-HVGTKTAVQIRSHAQKFF 71 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~y--------Grg-Wk~IAe-~VgTRT~~QVRSHaQKYF 71 (306)
|..+|+||++.+++.|..| |.. |+.+++ .++.+|..--|.||.|.+
T Consensus 2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L 57 (59)
T d1fexa_ 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998 334 999995 678999999999987764
No 21
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.13 E-value=0.05 Score=37.40 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHH---HhCCCCHHHHHH
Q 021875 26 REKWTEEEHQRFLDALKMYGRGWRQIEE---HVGTKTAVQIRS 65 (306)
Q Consensus 26 r~~WT~EEh~lFLEaLe~yGrgWk~IAe---~VgTRT~~QVRS 65 (306)
|..||+||-.-|+.|++.||..|..|-= +-++|+.+..+.
T Consensus 1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~ 43 (49)
T d1x58a1 1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAH 43 (49)
T ss_dssp SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHH
Confidence 4579999999999999999999999973 456899887765
No 22
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.49 E-value=0.31 Score=36.72 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=29.7
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhCC
Q 021875 48 WRQIEEHVGTKTAVQIRSHAQKFFSKVVRESNG 80 (306)
Q Consensus 48 Wk~IAe~VgTRT~~QVRSHaQKYF~kl~r~~~g 80 (306)
|..|++.+|.-...++|.+|.+|+...++.-.+
T Consensus 58 W~~va~~lg~~~~~~lr~~Y~~~L~~yE~~~~~ 90 (102)
T d1kkxa_ 58 WSMVAQRLQISDYQQLESIYFRILLPYERHMIS 90 (102)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998876433
No 23
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=86.29 E-value=1.2 Score=35.37 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHhCcc----hHHHHH------------HhCCCCHHHHHHHHHHHHHHHHHhh
Q 021875 28 KWTEEEHQRFLDALKMYGRG----WRQIEE------------HVGTKTAVQIRSHAQKFFSKVVRES 78 (306)
Q Consensus 28 ~WT~EEh~lFLEaLe~yGrg----Wk~IAe------------~VgTRT~~QVRSHaQKYF~kl~r~~ 78 (306)
.+|+|||..+|-.+-+||-+ |..|-. ++.+||+..+.-|..-...-+.++.
T Consensus 51 ~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE~ 117 (128)
T d1ofcx2 51 NYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIEREN 117 (128)
T ss_dssp SCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999999987 888732 4669999999999988777777763
No 24
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.20 E-value=0.18 Score=38.22 Aligned_cols=57 Identities=25% Similarity=0.514 Sum_probs=35.0
Q ss_pred HHHHHHHHhC-------cc-hHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHhhCCCCCCCcccccCCCCCCC
Q 021875 36 RFLDALKMYG-------RG-WRQIEEHVGT-----KTAVQIRSHAQKFFSKVVRESNGSSESSIMPIEIPPPRPK 97 (306)
Q Consensus 36 lFLEaLe~yG-------rg-Wk~IAe~VgT-----RT~~QVRSHaQKYF~kl~r~~~g~~~~~~~~i~iPpprpK 97 (306)
.|..+|...| .+ |..||+.+|- -...++|.+|.+|+...++-..+.. .-.+|+++|+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~ia~~lg~~~~~~~~~~~Lk~~Y~~~L~~yE~~~~~~~-----~~~~p~~~~r 106 (107)
T d1ig6a_ 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEE-----DKPLPPIKPR 106 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHT-----SSSSCTTCSC
T ss_pred HHHHHHHHhCChhhccccccHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCCCCCC
Confidence 4445555666 23 9999998873 2256999999999755544332211 2245666554
No 25
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=61.62 E-value=7.2 Score=29.80 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=24.5
Q ss_pred hHHHHHHhCC----CC-HHHHHHHHHHHHHHHHHhh
Q 021875 48 WRQIEEHVGT----KT-AVQIRSHAQKFFSKVVRES 78 (306)
Q Consensus 48 Wk~IAe~VgT----RT-~~QVRSHaQKYF~kl~r~~ 78 (306)
|..|++.+|- .+ +.++|.+|.+|+.......
T Consensus 76 W~~va~~lg~~~~~~~~~~~L~~~Y~k~L~~fE~~~ 111 (128)
T d1c20a_ 76 WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp HHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999998874 22 5689999999988776543
No 26
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.89 E-value=4 Score=31.10 Aligned_cols=30 Identities=10% Similarity=0.337 Sum_probs=22.2
Q ss_pred hHHHHHHhCC--CC--HHHHHHHHHHHHHHHHHh
Q 021875 48 WRQIEEHVGT--KT--AVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 48 Wk~IAe~VgT--RT--~~QVRSHaQKYF~kl~r~ 77 (306)
|..|++.+|- -+ ..++|.+|++|+....+.
T Consensus 74 W~~Va~~l~~~~~~~~~~~Lk~~Y~r~L~~yE~~ 107 (120)
T d1ryua_ 74 WRELATNLNVGTSSSAASSLKKQYIQCLYAFECK 107 (120)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998763 22 247899999997776543
No 27
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=52.00 E-value=9 Score=25.88 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHhCcchHHHHHHhC-CCCHHHHHHHHHHHHHHHHHh
Q 021875 29 WTEEEHQRFLDALKMYGRGWRQIEEHVG-TKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 29 WT~EEh~lFLEaLe~yGrgWk~IAe~Vg-TRT~~QVRSHaQKYF~kl~r~ 77 (306)
=..=|.+.+.++|+.|| +..+.|+.+| +|+ ..+.|+++.
T Consensus 18 ~~~~Er~~I~~aL~~~g-n~~~aA~~Lgisr~---------tL~rKlkk~ 57 (61)
T d1g2ha_ 18 IGFYEAQVLKLFYAEYP-STRKLAQRLGVSHT---------AIANKLKQY 57 (61)
T ss_dssp CSHHHHHHHHHHHHHSC-SHHHHHHHTTSCTH---------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHCCCHH---------HHHHHHHHh
Confidence 34669999999999997 5788999998 576 456666654
No 28
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=47.02 E-value=21 Score=23.41 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHH
Q 021875 32 EEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKF 70 (306)
Q Consensus 32 EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKY 70 (306)
+=+.++|+.|+.-++- +..||+.+|- +...|..|-++.
T Consensus 3 ~~D~~Il~~L~~n~r~s~~eiA~~l~l-s~~~v~~Ri~~L 41 (60)
T d2cyya1 3 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHERIRKL 41 (60)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 4578899999999887 9999999986 777888774443
No 29
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=44.64 E-value=26 Score=23.04 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHH
Q 021875 32 EEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKF 70 (306)
Q Consensus 32 EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKY 70 (306)
+-+.++|..|+.-|+- ...||+.+|. +...|..|-++.
T Consensus 3 ~~D~kIl~~L~~n~r~s~~~lA~~~gl-s~~~v~~Ri~~L 41 (60)
T d1i1ga1 3 ERDKIILEILEKDARTPFTEIAKKLGI-SETAVRKRVKAL 41 (60)
T ss_dssp SHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 3478899999999997 9999999987 778888875544
No 30
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=44.36 E-value=21 Score=23.63 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHH
Q 021875 32 EEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQK 69 (306)
Q Consensus 32 EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQK 69 (306)
+=+.++|..|+.-|+- +..||+.+|- +...|+.|-++
T Consensus 5 ~~D~~IL~~L~~~~r~s~~eiA~~l~l-s~~~v~~Ri~r 42 (63)
T d2cg4a1 5 NLDRGILEALMGNARTAYAELAKQFGV-SPETIHVRVEK 42 (63)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 4478899999999998 9999999976 77788877443
No 31
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=42.30 E-value=21 Score=24.44 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=29.4
Q ss_pred HHHHHHHHHHh----Ccc--hHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 021875 34 HQRFLDALKMY----GRG--WRQIEEHVGTKTAVQIRSHAQKFFSKVVRE 77 (306)
Q Consensus 34 h~lFLEaLe~y----Grg--Wk~IAe~VgTRT~~QVRSHaQKYF~kl~r~ 77 (306)
+..+|+.|..| |.- ++.|++++|-+++..|..| +..|.+.
T Consensus 7 Q~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~----l~~Le~k 52 (71)
T d1jhfa1 7 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH----LKALARK 52 (71)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCCHHHHHHH----HHHHHHC
Confidence 34566666655 665 9999999999998887765 6666654
No 32
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=39.44 E-value=32 Score=22.78 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCcc-hHHHHHHhCCCCHHHHHHHHHHH
Q 021875 32 EEHQRFLDALKMYGRG-WRQIEEHVGTKTAVQIRSHAQKF 70 (306)
Q Consensus 32 EEh~lFLEaLe~yGrg-Wk~IAe~VgTRT~~QVRSHaQKY 70 (306)
+=+.++|.+|+.-|+- +..||+.+| -+...|..|.++.
T Consensus 5 ~~D~~IL~~L~~n~r~s~~~iA~~lg-is~~tv~~Ri~~L 43 (63)
T d2cfxa1 5 QIDLNIIEELKKDSRLSMRELGRKIK-LSPPSVTERVRQL 43 (63)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHH
Confidence 3478899999999998 999999996 5677888775544
No 33
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.03 E-value=11 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.8
Q ss_pred hHHHHHHhCCCCHHHHHHH
Q 021875 48 WRQIEEHVGTKTAVQIRSH 66 (306)
Q Consensus 48 Wk~IAe~VgTRT~~QVRSH 66 (306)
=+.||..+.+||+.|+|..
T Consensus 35 c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 35 CKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 5789999999999999963
No 34
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=26.91 E-value=24 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCcchHHHHHHhC-CCC
Q 021875 33 EHQRFLDALKMYGRGWRQIEEHVG-TKT 59 (306)
Q Consensus 33 Eh~lFLEaLe~yGrgWk~IAe~Vg-TRT 59 (306)
|..++.++|+.+|-+..+-|+.+| +|+
T Consensus 52 E~~lI~~aL~~~~Gn~~~AA~~LGI~R~ 79 (91)
T d1ntca_ 52 ERTLLTTALRHTQGHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHCCCHH
Confidence 667888899999998999999999 576
No 35
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.89 E-value=23 Score=24.62 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=16.7
Q ss_pred hHHHHHHhCCCCHHHHHHH
Q 021875 48 WRQIEEHVGTKTAVQIRSH 66 (306)
Q Consensus 48 Wk~IAe~VgTRT~~QVRSH 66 (306)
=+.||.++.+||+.|+|..
T Consensus 36 c~~vA~~ikgkt~eeiR~~ 54 (70)
T d1nexa1 36 CKVVAEMIRGRSPEEIRRT 54 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHH
Confidence 5789999999999999963
No 36
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=20.74 E-value=1e+02 Score=19.64 Aligned_cols=33 Identities=3% Similarity=0.055 Sum_probs=21.9
Q ss_pred HhCcchHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 021875 43 MYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVR 76 (306)
Q Consensus 43 ~yGrgWk~IAe~VgTRT~~QVRSHaQKYF~kl~r 76 (306)
..|...+.||+.+| -|...|+.|..+-..++.+
T Consensus 35 ~~~~s~~eIA~~lg-is~~tv~~~~~ra~~~Lr~ 67 (71)
T d1rp3a2 35 YEELPAKEVAKILE-TSVSRVSQLKAKALERLRE 67 (71)
T ss_dssp TSCCCHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred hHhCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 44666999999986 4556676666655555543
Done!