Query 021877
Match_columns 306
No_of_seqs 174 out of 957
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 9.3E-54 3.2E-58 376.1 14.5 161 21-186 11-172 (174)
2 1ut7_A No apical meristem prot 100.0 1.2E-53 4.2E-58 374.5 12.3 156 22-187 14-170 (171)
3 1ldd_A APC2WHB, anaphase promo 33.5 15 0.00052 27.3 1.3 28 25-53 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 24.5 98 0.0033 23.9 4.4 36 32-71 50-85 (104)
5 3i9v_7 NADH-quinone oxidoreduc 21.3 1.6E+02 0.0054 23.8 5.3 69 37-108 15-96 (129)
6 4dox_A Coat protein; all helix 13.2 1.1E+02 0.0037 27.3 2.8 20 28-47 158-177 (226)
7 3nr5_A MAF1, repressor of RNA 11.8 61 0.0021 27.6 0.6 14 56-69 118-131 (164)
8 3vej_A Ubiquitin-like protein 9.3 1.4E+02 0.0049 19.7 1.6 14 284-297 6-19 (41)
9 3cpr_A Dihydrodipicolinate syn 8.2 1.3E+02 0.0043 27.4 1.3 27 25-53 118-144 (304)
10 2jv2_A Putative uncharacterize 7.7 1.9E+02 0.0064 21.5 1.9 28 35-64 26-54 (83)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=9.3e-54 Score=376.05 Aligned_cols=161 Identities=48% Similarity=0.982 Sum_probs=132.6
Q ss_pred CCCCCCCCceecCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCC-CCCCCCceEEEEeeecccccCCCCCccc
Q 021877 21 HEEVMLPGFRFHPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLP-MSTVGDKEWYFFCIRGRKYRNSIRPNRV 99 (306)
Q Consensus 21 ~~~~lpPGfRF~PTDeELV~~YL~~Ki~g~plp~~~I~evDVY~~~PwdLp-~~~~~e~ewYFFt~r~~k~~~g~R~~R~ 99 (306)
....|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+|| .+..++.+|||||++.+|+++|.|++|+
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEE
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceee
Confidence 345699999999999999999999999999999999999999999999999 3446788999999999999999999999
Q ss_pred ccCceeeccCCCccEecCCCCceeEEEEEEEeeeeCCCCCCCccCceeeeeecCCCCCCCCCCCCccccccCCcEEEEEE
Q 021877 100 TGSGFWKATGIDKPIHSAKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKITNFSNTKDIAQEAEVWTLCRI 179 (306)
Q Consensus 100 tggG~Wk~~G~~k~I~~~~~~g~~IG~Kk~L~Fy~g~~~~g~kT~W~MhEY~L~~~~~~~~~~~~~~~~~e~~d~VLCRI 179 (306)
|++|+||++|++++|... |.+||+||+|+||.++++++.+|+|+||||+|......... + .......++||||||
T Consensus 91 t~~G~WkatG~dk~I~~~---g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~-~-~~~~~~~~~wVlCrv 165 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR---GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAG-A-KKGSLRLDDWVLCRL 165 (174)
T ss_dssp ETTEEEEECSCCEEECCS---SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-------------CCSSEEEEEE
T ss_pred cCCceEccCCCCcEEeeC---CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccc-c-ccCCCCCCCEEEEEE
Confidence 999999999999999864 78999999999999999999999999999999987533210 0 111134679999999
Q ss_pred EecCCCC
Q 021877 180 FKRTPSY 186 (306)
Q Consensus 180 fkk~~s~ 186 (306)
|+|++..
T Consensus 166 f~K~~~~ 172 (174)
T 3ulx_A 166 YNKKNEW 172 (174)
T ss_dssp EESCC--
T ss_pred EEcCCCc
Confidence 9987654
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.2e-53 Score=374.50 Aligned_cols=156 Identities=51% Similarity=0.955 Sum_probs=128.9
Q ss_pred CCCCCCCceecCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCC-CCCCCCceEEEEeeecccccCCCCCcccc
Q 021877 22 EEVMLPGFRFHPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLP-MSTVGDKEWYFFCIRGRKYRNSIRPNRVT 100 (306)
Q Consensus 22 ~~~lpPGfRF~PTDeELV~~YL~~Ki~g~plp~~~I~evDVY~~~PwdLp-~~~~~e~ewYFFt~r~~k~~~g~R~~R~t 100 (306)
...|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+|| .+..++++|||||++.+++++|.|++|+|
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t 93 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA 93 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence 45799999999999999999999999999999999999999999999999 44467889999999999999999999999
Q ss_pred cCceeeccCCCccEecCCCCceeEEEEEEEeeeeCCCCCCCccCceeeeeecCCCCCCCCCCCCccccccCCcEEEEEEE
Q 021877 101 GSGFWKATGIDKPIHSAKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKITNFSNTKDIAQEAEVWTLCRIF 180 (306)
Q Consensus 101 ggG~Wk~~G~~k~I~~~~~~g~~IG~Kk~L~Fy~g~~~~g~kT~W~MhEY~L~~~~~~~~~~~~~~~~~e~~d~VLCRIf 180 (306)
++|+||++|++++|... +.+||+||+|+||+++++++.+|+|+||||+|...... ......++|||||||
T Consensus 94 ~~G~Wk~tG~~k~I~~~---~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~-------~~~~~~~~~VlCrv~ 163 (171)
T 1ut7_A 94 GSGYWKATGTDKIISTE---GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR-------NGSTKLDDWVLCRIY 163 (171)
T ss_dssp TTEEEEEEEEEEEEEET---TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC---------------CCEEEEEEE
T ss_pred CCCEEeccCCCceEEec---CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc-------cCcccCCCEEEEEEE
Confidence 99999999999999975 69999999999999999999999999999999987521 112346799999999
Q ss_pred ecCCCCC
Q 021877 181 KRTPSYK 187 (306)
Q Consensus 181 kk~~s~r 187 (306)
+|+.+.+
T Consensus 164 ~k~~~~~ 170 (171)
T 1ut7_A 164 KKQSSAQ 170 (171)
T ss_dssp ECC----
T ss_pred EcCCCCC
Confidence 9887654
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=33.48 E-value=15 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCCCceecC-ChHHHHHHHHHHHHhCCCCC
Q 021877 25 MLPGFRFHP-TDEELVGFYLRRKVEKKPIS 53 (306)
Q Consensus 25 lpPGfRF~P-TDeELV~~YL~~Ki~g~plp 53 (306)
.+.|+.|.. |++||-. ||.+|+...-|.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 466999998 9999877 699999877654
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=24.51 E-value=98 Score=23.94 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCC
Q 021877 32 HPTDEELVGFYLRRKVEKKPISIEIIKQADIYKYDPWDLP 71 (306)
Q Consensus 32 ~PTDeELV~~YL~~Ki~g~plp~~~I~evDVY~~~PwdLp 71 (306)
|-|..||++.-...-..|+|||. +.|+-+..|.++|
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP 85 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIP 85 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSC
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccch
Confidence 56888999988888899999995 5688888899998
No 5
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=21.30 E-value=1.6e+02 Score=23.80 Aligned_cols=69 Identities=28% Similarity=0.390 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCCCcCceeecc----CCCC-CCCCCCC-----CC-CCCceEEEEeeecccccCCCCCc-cccc-Cc
Q 021877 37 ELVGFYLRRKVEKKPISIEIIKQAD----IYKY-DPWDLPM-----ST-VGDKEWYFFCIRGRKYRNSIRPN-RVTG-SG 103 (306)
Q Consensus 37 ELV~~YL~~Ki~g~plp~~~I~evD----VY~~-~PwdLp~-----~~-~~e~ewYFFt~r~~k~~~g~R~~-R~tg-gG 103 (306)
||+. +|+.....+.+. |=+++| ||.. -|++||. +. .+.++-||+.-.......-++.. |+-| .-
T Consensus 15 ell~-Wl~eyA~~~g~~--FekeaDFPDyIYRMeRPydLPTtvMsvsLS~~~geP~l~a~vSprha~lK~islr~~g~h~ 91 (129)
T 3i9v_7 15 ELLS-WMREYAQAKGVR--FEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHI 91 (129)
T ss_dssp HHHH-HHHHHHHHTTCC--EEEEEECHHHHSCCSSCCCCSCSEEEEEEECSSSCEEEEEEECCSSSSSCCEEEEETTTTE
T ss_pred HHHH-HHHHHHHhcCCc--eeecccccHHHHhhcCcccCCceeEEEEeccCCCCeeEEEecCcchhhhcceEEecCCCcc
Confidence 3444 466655555443 445666 8875 5999992 22 34477888887764433222222 3333 45
Q ss_pred eeecc
Q 021877 104 FWKAT 108 (306)
Q Consensus 104 ~Wk~~ 108 (306)
.||..
T Consensus 92 hwh~h 96 (129)
T 3i9v_7 92 HLHAH 96 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 88876
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=13.24 E-value=1.1e+02 Score=27.33 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=15.0
Q ss_pred CceecCChHHHHHHHHHHHH
Q 021877 28 GFRFHPTDEELVGFYLRRKV 47 (306)
Q Consensus 28 GfRF~PTDeELV~~YL~~Ki 47 (306)
|..+.||++|+|.+=..+++
T Consensus 158 GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 89999999999998444433
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=11.83 E-value=61 Score=27.58 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=11.3
Q ss_pred ceeeccCCCCCCCC
Q 021877 56 IIKQADIYKYDPWD 69 (306)
Q Consensus 56 ~I~evDVY~~~Pwd 69 (306)
-+.++|||.+.|..
T Consensus 118 ~l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 118 CLAECDIYSYNPDL 131 (164)
T ss_dssp CGGGCEEEEECCCG
T ss_pred CccCCeEEEEcCCC
Confidence 35678999999983
No 8
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=9.32 E-value=1.4e+02 Score=19.68 Aligned_cols=14 Identities=14% Similarity=0.556 Sum_probs=11.3
Q ss_pred CChHHHHhHhhhhc
Q 021877 284 GNWDELRSVVELAV 297 (306)
Q Consensus 284 ~~~d~~~~~~~~~~ 297 (306)
--||||..+++-.+
T Consensus 6 VPWd~Ie~lL~~~~ 19 (41)
T 3vej_A 6 VPWDDIEALLKNNF 19 (41)
T ss_dssp SCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHh
Confidence 35999999988765
No 9
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=8.15 E-value=1.3e+02 Score=27.38 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=17.4
Q ss_pred CCCCceecCChHHHHHHHHHHHHhCCCCC
Q 021877 25 MLPGFRFHPTDEELVGFYLRRKVEKKPIS 53 (306)
Q Consensus 25 lpPGfRF~PTDeELV~~YL~~Ki~g~plp 53 (306)
++| |.|.||+++|+.||- .-...-++|
T Consensus 118 ~~P-~y~~~~~~~l~~~f~-~ia~a~~lP 144 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG-AIAAATEVP 144 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH-HHHHHCCSC
T ss_pred CCC-CCCCCCHHHHHHHHH-HHHHhcCCC
Confidence 345 668899999999863 333333444
No 10
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=7.66 E-value=1.9e+02 Score=21.55 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhCCCCCcC-ceeeccCCC
Q 021877 35 DEELVGFYLRRKVEKKPISIE-IIKQADIYK 64 (306)
Q Consensus 35 DeELV~~YL~~Ki~g~plp~~-~I~evDVY~ 64 (306)
+..+ ..||++++.|+|+... .|. +++++
T Consensus 26 ~~~~-~~~lk~~L~grPV~~GD~I~-i~~~G 54 (83)
T 2jv2_A 26 PPDF-VDVIRIKLQGKTVRTGDVIG-ISILG 54 (83)
T ss_dssp CHHH-HHHHHHHHTTSEECTTCEEE-EEETT
T ss_pred CccH-HHHHHHHHCCCCccCCCEEE-EeeCC
Confidence 3444 4689999999998653 444 56543
Done!