BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021878
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 141/297 (47%), Gaps = 23/297 (7%)
Query: 14 RIILTEPT--GSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQF 71
++LT P +S +L YG V SWK + EE L++S+ + K +RGGIP+ FP F
Sbjct: 9 EVVLTHPADETTSVHILKYGATVYSWK-LKSEEQLWLSTAAKLDGSKPVRGGIPLVFPVF 67
Query: 72 G------NLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILK---STEEDIKAWPR 122
G +L L QHG ARN W PP TV LK + E K WP
Sbjct: 68 GKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPP-----TVQFGLKPEIANPELTKLWPM 122
Query: 123 GFELRLRISISPGKLTLIPRVRNVDN-KAFSFMFALRNYLSVSDISEVRVEGLETLDYFD 181
+ L L + + L V N + K F + Y + DI V L + +D
Sbjct: 123 DYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYD 182
Query: 182 YLMNKERFTEQADAITFDGEIDRVY--LSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNP 239
L+ KE + ++ +TF+ E D +Y +S I I+D + + L++ +PD+VVWNP
Sbjct: 183 QLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNP 240
Query: 240 WDKKAKALPDMG-VDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQ 295
W +K++ + D GY+ M+C++ + + I L P ++W Q L Y + Q
Sbjct: 241 WIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLLCKEELKYQAIQ 297
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 141/297 (47%), Gaps = 23/297 (7%)
Query: 14 RIILTEPT--GSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQF 71
++LT P +S +L YG V SWK + EE L++S+ + K +RGGIP+ FP F
Sbjct: 9 EVVLTHPADETTSVHILKYGATVYSWK-LKSEEQLWLSTAAKLDGSKPVRGGIPLVFPVF 67
Query: 72 G------NLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILK---STEEDIKAWPR 122
G +L L QHG ARN W PP TV LK + E K WP
Sbjct: 68 GKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPP-----TVQFGLKPEIANPELTKLWPM 122
Query: 123 GFELRLRISISPGKLTLIPRVRNVDN-KAFSFMFALRNYLSVSDISEVRVEGLETLDYFD 181
+ L L + + L V N + K F + Y + DI V L + +D
Sbjct: 123 DYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYD 182
Query: 182 YLMNKERFTEQADAITFDGEIDRVY--LSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNP 239
L+ KE + ++ +TF+ E D +Y +S I I+D + + L++ +PD+VVWNP
Sbjct: 183 QLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNP 240
Query: 240 WDKKAKALPDMG-VDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQ 295
W +K++ + D GY+ M+C++ + + I L P ++W Q L Y + Q
Sbjct: 241 WIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLLXKEELKYQAIQ 297
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 129/266 (48%), Gaps = 21/266 (7%)
Query: 10 DGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFP 69
D L I++ P A L G ++SWK EE+L++S+ + +K A+RGG+P+C+P
Sbjct: 39 DDLDLIVVDHPQ-VKASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWP 97
Query: 70 QFGNLGL--LEQHGFARNRFWSL---DEDASPLPPANNQSTVDLILKSTEEDIKAWPRGF 124
FG L HGFARN W+L +ED +N + L+S+E K WP F
Sbjct: 98 WFGPAAQQGLPSHGFARNLPWALKAHNED-------DNGVMLTFELQSSEATRKYWPHDF 150
Query: 125 ELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLM 184
L R + GK I + + F+ AL +Y +V DI+ V+V GL D F +
Sbjct: 151 TLLARFKV--GKTCEIELEAHGE---FATTSALHSYFNVGDIANVKVSGLG--DRFIDKV 203
Query: 185 NKERFTEQADAI-TFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKK 243
N + D I TF DRVYL+ I D RT ++ + V WNP
Sbjct: 204 NDAKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVVHHHHLNVVGWNPGPAL 263
Query: 244 AKALPDMGVDGYKTMLCVDSAAIENP 269
+ ++ DM DGYKT +CV++ P
Sbjct: 264 SVSMGDMPDDGYKTFVCVETVYATAP 289
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 127/276 (46%), Gaps = 44/276 (15%)
Query: 3 LNIVHDKDGLPRIILTEPTGSSAEVLLYGGQVVSWK-NERREELLFMSSKSFWKPPKAIR 61
L++V D +P + L G+ A++ L G Q++SWK ++++L++S +K AIR
Sbjct: 13 LHLVQHND-IPVLHLKHAVGT-AKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIR 70
Query: 62 GGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWP 121
GG+P+C+P FG + HG AR R W L + +
Sbjct: 71 GGVPICYPWFGGVK-QPAHGTARIRLWQLSHYYISVHKVRLE------------------ 111
Query: 122 RGFELRLRISISPGKLTLIPRVRNVDNKAFSFMF--------ALRNYLSVSDISEVRVEG 173
FEL ++I K++++ D +F AL Y ++ DI++V V+G
Sbjct: 112 --FELFSDLNIIEAKVSMVF----TDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQG 165
Query: 174 L-ETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMP 232
L ET F+ L ++ I+ + +D +Y + + I+D RT L
Sbjct: 166 LPETC--FNSLNQQQENVPSPRHISEN--VDCIYSAENMQNQILDKSFNRTIALHHHNAS 221
Query: 233 DSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIEN 268
V+WNPW KK + + GY+ MLC+++A I +
Sbjct: 222 QFVLWNPWHKKTSGMSE---TGYQKMLCLETARIHH 254
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 26/184 (14%)
Query: 31 GGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGL-----------LEQ 79
GG V W + + +L+ + F P ++RGGIP+ FP GNL L+Q
Sbjct: 32 GGLVTEWTVQG-QPILYFDRERFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYRLKQ 90
Query: 80 HGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTL 139
HGFAR+ W + + + + +DL L + ++A+P FEL + L +
Sbjct: 91 HGFARDLPWEVIGQQT-----QDNARLDLRLSHNDATLEAFPFAFELVFSYQLQGHSLRI 145
Query: 140 IPRVRNVDNKAFSFMFALRNYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFD 199
R+ N+ ++ F Y + + + + DY D + D +D
Sbjct: 146 EQRIANLGDQRXPFSLGFHPYFFCREKLGITL-AIPANDYLD--------QKTGDCHGYD 196
Query: 200 GEID 203
G+++
Sbjct: 197 GQLN 200
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 26/111 (23%)
Query: 30 YGGQVVSWKNERREELLFMSSKSFWKPPKAIRG-GIPVCFPQFGNLG-----------LL 77
+G ++ S K+ +E W+ I G PV FP G L L
Sbjct: 17 HGAEIQSVKSAHTDEEFX------WQANPEIWGRHAPVLFPIVGRLKNDEYTYKGKTYHL 70
Query: 78 EQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRL 128
QHGFARN + ++ + + ++ +LK EE K +P FE R+
Sbjct: 71 GQHGFARNADFEVEN--------HTKESITFLLKDNEETRKVYPFKFEFRV 113
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With
Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 48 MSSKSFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPL 97
M+ K+ K PK++ + P G+L L +HG N F+ L + P+
Sbjct: 1 MAKKTGAKYPKSL-----LSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPI 45
>pdb|2BV9|A Chain A, How Family 26 Glycoside Hydrolases Orchestrate Catalysis
On Different Polysaccharides. Structure And Activity Of
A Clostridium Thermocellum Lichenase, Ctlic26a
Length = 290
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 235 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 280
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
>pdb|2BVD|A Chain A, How Family 26 Glycoside Hydrolases Orchestrate Catalysis
On Different Polysaccharides. Structure And Activity Of
A Clostridium Thermocellum Lichenase, Ctlic26a
Length = 283
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 235 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 280
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
>pdb|2V3G|A Chain A, Structure Of A Family 26 Lichenase In Complex With
Noeuromycin
Length = 283
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 235 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 280
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
>pdb|2CIP|A Chain A, Structure Of The Michaelis Complex Of A Family 26
Lichenase
Length = 282
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 235 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 280
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
>pdb|2VI0|A Chain A, Lichenase Ctlic26 In Complex With A Thio-Oligosaccharide
Length = 282
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 235 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRG 280
+ W PW+ + + D Y T + D A I L+P E G
Sbjct: 67 ITWEPWEYNTVDIKNGKADAYITRMAQDMKAYGKEIWLRPLHEANG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,556,537
Number of Sequences: 62578
Number of extensions: 393764
Number of successful extensions: 912
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 16
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)