Query 021878
Match_columns 306
No_of_seqs 220 out of 1345
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:21:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 3.7E-70 8.1E-75 464.0 29.6 294 1-295 12-305 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 6.5E-61 1.4E-65 430.3 30.6 265 15-285 2-269 (269)
3 COG0676 Uncharacterized enzyme 100.0 4.3E-51 9.2E-56 353.8 22.8 261 9-286 21-284 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 4.4E-49 9.5E-54 354.4 25.5 249 12-285 1-271 (271)
5 cd09024 Aldose_epim_lacX Aldos 100.0 2.4E-43 5.2E-48 319.9 25.8 244 15-286 1-288 (288)
6 cd09021 Aldose_epim_Ec_YphB al 100.0 5.3E-41 1.1E-45 302.4 22.5 227 27-285 5-273 (273)
7 PRK15172 putative aldose-1-epi 100.0 2E-38 4.3E-43 288.8 28.2 247 11-288 9-299 (300)
8 cd01081 Aldose_epim aldose 1-e 100.0 8.7E-38 1.9E-42 282.1 24.4 237 24-282 2-283 (284)
9 cd09022 Aldose_epim_Ec_YihR Al 100.0 6.3E-37 1.4E-41 277.4 25.5 236 23-284 1-284 (284)
10 PF01263 Aldose_epim: Aldose 1 100.0 9.1E-38 2E-42 284.6 19.2 260 13-285 1-300 (300)
11 cd09019 galactose_mutarotase_l 100.0 1.7E-35 3.6E-40 272.9 24.6 254 15-286 2-326 (326)
12 COG2017 GalM Galactose mutarot 100.0 1E-34 2.2E-39 264.9 26.2 253 8-288 8-307 (308)
13 PLN00194 aldose 1-epimerase; P 100.0 2.5E-32 5.5E-37 252.2 26.8 265 9-287 6-336 (337)
14 TIGR02636 galM_Leloir galactos 100.0 3.4E-32 7.4E-37 251.3 24.2 257 11-286 3-334 (335)
15 PRK11055 galM galactose-1-epim 100.0 3.4E-30 7.5E-35 237.9 26.7 260 9-287 6-340 (342)
16 PTZ00485 aldolase 1-epimerase; 100.0 2.1E-28 4.5E-33 227.0 27.4 267 6-287 7-369 (376)
17 KOG1604 Predicted mutarotase [ 99.9 4.1E-22 9E-27 176.7 24.1 262 9-288 17-351 (353)
18 cd09023 Aldose_epim_Ec_c4013 A 99.9 2.4E-20 5.2E-25 168.9 16.7 239 25-282 2-283 (284)
19 PF14486 DUF4432: Domain of un 99.4 9.3E-12 2E-16 113.3 15.7 254 10-286 2-302 (302)
20 cd09269 deoxyribose_mutarotase 99.4 1.3E-11 2.7E-16 111.8 14.6 188 76-284 61-292 (293)
21 PF14315 DUF4380: Domain of un 98.2 0.0024 5.2E-08 57.6 24.4 126 13-155 5-144 (274)
22 PF09095 DUF1926: Domain of un 95.3 1.9 4.2E-05 38.9 16.8 132 8-155 3-178 (278)
23 TIGR03593 yidC_nterm membrane 93.9 0.97 2.1E-05 42.4 12.0 117 13-152 74-203 (366)
24 PF14849 YidC_periplas: YidC p 93.6 0.81 1.8E-05 40.8 10.5 119 15-154 2-132 (270)
25 PRK01318 membrane protein inse 93.2 1.4 3E-05 43.5 11.9 121 14-153 40-170 (521)
26 PF00699 Urease_beta: Urease b 82.1 1.8 3.9E-05 32.4 3.3 32 130-163 12-43 (100)
27 cd00407 Urease_beta Urease bet 81.9 2 4.3E-05 32.3 3.5 31 130-162 13-43 (101)
28 TIGR00192 urease_beta urease, 81.7 2.2 4.7E-05 32.1 3.6 31 130-162 13-43 (101)
29 COG0832 UreB Urea amidohydrola 78.1 3 6.4E-05 31.3 3.3 32 129-162 12-43 (106)
30 PRK13202 ureB urease subunit b 77.5 3.5 7.6E-05 31.1 3.6 31 130-162 13-44 (104)
31 PRK13205 ureB urease subunit b 75.5 3.8 8.3E-05 33.0 3.5 31 130-162 13-43 (162)
32 PRK13203 ureB urease subunit b 74.6 4.4 9.4E-05 30.5 3.4 31 130-162 13-43 (102)
33 PRK13204 ureB urease subunit b 74.5 4.2 9.2E-05 32.9 3.5 42 119-162 24-66 (159)
34 PRK13201 ureB urease subunit b 67.9 7.1 0.00015 30.8 3.4 31 130-162 13-43 (136)
35 PRK13198 ureB urease subunit b 66.3 7.8 0.00017 31.4 3.4 42 119-162 29-71 (158)
36 PRK13192 bifunctional urease s 64.3 8.2 0.00018 32.8 3.4 42 119-162 110-152 (208)
37 PRK13986 urease subunit alpha; 61.5 9.3 0.0002 32.9 3.2 32 129-162 117-148 (225)
38 PF05506 DUF756: Domain of unk 60.9 28 0.0006 25.3 5.4 40 120-161 5-44 (89)
39 PF02929 Bgal_small_N: Beta ga 60.4 1.1E+02 0.0023 27.5 10.2 30 16-47 1-30 (276)
40 PF12690 BsuPI: Intracellular 49.1 24 0.00052 25.5 3.3 20 136-155 1-20 (82)
41 PF04744 Monooxygenase_B: Mono 46.6 26 0.00056 32.8 3.8 29 126-154 254-282 (381)
42 PRK05089 cytochrome C oxidase 46.1 1.3E+02 0.0028 25.5 7.6 52 103-156 62-115 (188)
43 TIGR03079 CH4_NH3mon_ox_B meth 45.5 28 0.00061 32.5 3.8 27 128-154 275-301 (399)
44 cd03171 SORL_Dfx_classI Supero 42.5 41 0.0009 24.1 3.6 39 254-292 30-71 (78)
45 PF07718 Coatamer_beta_C: Coat 34.8 1E+02 0.0022 24.8 5.1 36 256-291 85-128 (140)
46 PTZ00128 cytochrome c oxidase 29.6 3.6E+02 0.0078 23.7 8.0 53 103-157 106-160 (232)
47 PF00207 A2M: Alpha-2-macroglo 25.9 1.6E+02 0.0034 21.3 4.6 35 121-155 55-90 (92)
48 PF04442 CtaG_Cox11: Cytochrom 25.8 1.1E+02 0.0023 25.1 3.9 51 103-155 35-87 (152)
49 cd06535 CIDE_N_CAD CIDE_N doma 24.5 24 0.00053 25.2 -0.0 22 257-280 56-77 (77)
50 PLN02303 urease 23.7 81 0.0018 33.0 3.4 30 130-161 143-172 (837)
51 PF14059 DUF4251: Domain of un 23.6 3.7E+02 0.0081 21.2 8.4 74 65-154 54-134 (138)
52 PF08187 Tetradecapep: Myoacti 23.5 31 0.00068 15.8 0.2 7 299-305 8-14 (14)
53 PRK10340 ebgA cryptic beta-D-g 23.3 9.8E+02 0.021 26.0 12.7 34 14-49 725-758 (1021)
54 PF14796 AP3B1_C: Clathrin-ada 22.9 2.7E+02 0.0059 22.5 5.7 22 268-289 122-143 (145)
55 PF14310 Fn3-like: Fibronectin 22.4 1.1E+02 0.0024 21.0 3.1 22 268-289 25-46 (71)
56 KOG4342 Alpha-mannosidase [Car 22.0 5.6E+02 0.012 26.3 8.6 118 13-144 714-856 (1078)
57 cd01615 CIDE_N CIDE_N domain, 20.7 33 0.00071 24.7 -0.0 21 257-279 57-77 (78)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-70 Score=463.96 Aligned_cols=294 Identities=67% Similarity=1.182 Sum_probs=279.7
Q ss_pred CCeeeecCCCCccEEEEECCCccEEEEecCCeEEEEEEeCCCeeeEEecCCCCCCCCCcccCcccEEccccCCCCCCCCc
Q 021878 1 MPLNIVHDKDGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGLLEQH 80 (306)
Q Consensus 1 ~~~~~~~~~~~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~~~g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~~~~~~H 80 (306)
|++.++++.+|++.+.|++++|.+|+|..+||+|+||+..+|+|+||.+..+.+++.+|||||+|+|||+||....+++|
T Consensus 12 ~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qH 91 (305)
T KOG1594|consen 12 MPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQH 91 (305)
T ss_pred ccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCCccccc
Confidence 57888999999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred eEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeecccc
Q 021878 81 GFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNY 160 (306)
Q Consensus 81 Gfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpY 160 (306)
||||++.|.++....+++ ..+...|.|.|.+++++++.||++|++++++.|.++.|+++.+|+|++++++.|++++|+|
T Consensus 92 GFaRn~~W~v~~~p~~lp-~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtY 170 (305)
T KOG1594|consen 92 GFARNRFWEVENNPPPLP-SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTY 170 (305)
T ss_pred ccccceeeEeccCCCCCC-cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeee
Confidence 999999999998765444 3346889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEeccCCCccccccccccceeccCceeeecCccCeEEeCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCc
Q 021878 161 LSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPW 240 (306)
Q Consensus 161 F~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~ 240 (306)
|.++|+.+++++|++++.|+|++....++.++++.++|.+++|++|++.+.++.|.|...+|+|.+..+++|+.||||||
T Consensus 171 f~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l~k~g~pDaVVWNPW 250 (305)
T KOG1594|consen 171 FRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVLKKEGLPDAVVWNPW 250 (305)
T ss_pred EeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEEeccCCCceEEeChh
Confidence 99999999999999999999988777788888999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcceEEeceeeecCCeEeCCCCEEEEEEEEEEEecCCCCCC
Q 021878 241 DKKAKALPDMGVDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELSTVSSSYCSGQ 295 (306)
Q Consensus 241 ~~~~~~~~d~~~~~~~~~vCvEp~~~~g~~~L~pGe~~~~~~~i~~~~~~~~~~~ 295 (306)
.++++.|+||++++|++|+|||++.+...++|+|||+|++++.+.+..+++||+|
T Consensus 251 ~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv~s~~~s~q 305 (305)
T KOG1594|consen 251 DKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIVPSSYCSGQ 305 (305)
T ss_pred HhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEeecccccCC
Confidence 9999999999999999999999999999999999999999999999999999876
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=6.5e-61 Score=430.31 Aligned_cols=265 Identities=45% Similarity=0.784 Sum_probs=239.6
Q ss_pred EEEECCCccEEEEecCCeEEEEEEeCCCeeeEEecCCCCCCCCCcccCcccEEccccCCCC---CCCCceEEeccCcEEE
Q 021878 15 IILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLG---LLEQHGFARNRFWSLD 91 (306)
Q Consensus 15 ~~L~~~~~~~a~v~~~Ga~l~s~~~~~g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~~---~~~~HGfar~~~W~v~ 91 (306)
++|+|+. ++|+|.++||+|+||+.++++|+||+++.+.|+..++||||+|+|||||||+. ++++|||||++.|+|.
T Consensus 2 i~i~~~~-~~a~i~~~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~ 80 (269)
T cd09020 2 IVLDHPG-ASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELL 80 (269)
T ss_pred EEEeCCC-ceEEEECCCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEe
Confidence 6789984 99999999999999998756999999999999999999999999999999985 7899999999999999
Q ss_pred eeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeeccccccCCCcceEEE
Q 021878 92 EDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDISEVRV 171 (306)
Q Consensus 92 ~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~~~~~~ 171 (306)
+... +++..+++|.+.+++++++.|||+|+++++|+|.+++|+++++|+|+|+++|||++|+||||+++++.++++
T Consensus 81 ~~~~----~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~p~~~g~HpYf~v~d~~~~~v 156 (269)
T cd09020 81 EVSE----DEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRV 156 (269)
T ss_pred eeec----CCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcCCcEEEEEEEECCCCCCeEehhccCeeEecCCccccEE
Confidence 8742 223567888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCccccccccccceeccCceeeecCccCeEEeCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCC
Q 021878 172 EGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMG 251 (306)
Q Consensus 172 ~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~~~d~~ 251 (306)
.|+.+..|+|++..... ..+.+.+.|.+++|++|.+.++.+.|.|+..+++|.|..++.+++||||||.+++++|+||+
T Consensus 157 ~gl~~~~y~d~~~~~~~-~~~~~~~~~~~~~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~ 235 (269)
T cd09020 157 EGLEGATYLDKLTDQRE-KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMADFP 235 (269)
T ss_pred eCCCCCceEEcCCCccc-cccCCceEECCccceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccccCC
Confidence 99988889997653222 22346788999999999988888999999889999999988999999999999999999999
Q ss_pred CCCCcceEEeceeeecCCeEeCCCCEEEEEEEEE
Q 021878 252 VDGYKTMLCVDSAAIENPIVLKPFEEWRGRQELS 285 (306)
Q Consensus 252 ~~~~~~~vCvEp~~~~g~~~L~pGe~~~~~~~i~ 285 (306)
+++|++||||||+++.+.++|+|||+++.+++|+
T Consensus 236 ~~~~~~fvCvEp~~~~~~~~L~pG~~~~~~~~i~ 269 (269)
T cd09020 236 DDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269 (269)
T ss_pred ccccceEEEECeeecCCCEEECCCCCEEEEEEEC
Confidence 9999999999999988999999999999999874
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-51 Score=353.82 Aligned_cols=261 Identities=38% Similarity=0.625 Sum_probs=221.7
Q ss_pred CCCccEEEEECCCccEEEEecCCeEEEEEEeCCCeeeEEecCCCCCCCCCcccCcccEEccccCCCCC--CCCceEEecc
Q 021878 9 KDGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGL--LEQHGFARNR 86 (306)
Q Consensus 9 ~~~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~~~g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~~~--~~~HGfar~~ 86 (306)
.+.++.+.+.+.. .+|.|+.+||+|.||++++++|+||+++.+.+..+++||||+|+||||||++.. +|.|||||++
T Consensus 21 ~~~~~~~~~~h~~-~~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG~AR~~ 99 (287)
T COG0676 21 LDQLPLIVVDHPL-GSAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHGFARNR 99 (287)
T ss_pred eeccCceEeeccc-ceeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCCccchhhcC
Confidence 5567788888886 899999999999999998678999999999999999999999999999999865 7999999999
Q ss_pred CcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeeccccccCCCc
Q 021878 87 FWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDI 166 (306)
Q Consensus 87 ~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~ 166 (306)
+|++.++.. +++...++|.|..+++ |+.|.+++++++. +.|+++++..|+.+ |+.++||||+++|+
T Consensus 100 ~W~l~~~~~----~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~g-~~le~~l~~~~~~s----~~~AlHtYF~VgDi 165 (287)
T COG0676 100 PWKLLEHDE----DEDGVRVTFGLDLEDE-----PHDFTLRLTFRFG-ETLELELESYGEES----FQAALHTYFRVGDI 165 (287)
T ss_pred ceeeeehhc----ccCceEEEEEeCCCcc-----ccceEEEEEeecc-ceEEEEEEecChhH----HHHhhcceEEecch
Confidence 999999853 4445677888876432 9999999999997 57999999988766 99999999999999
Q ss_pred ceEEEeccCCCccccccccccceeccCceeeecCccCeEEeCCCCeEEEEeCCCCcEEEEEecCCCcEEEeCCccccccc
Q 021878 167 SEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKA 246 (306)
Q Consensus 167 ~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~ 246 (306)
+++.++|+.+..+ +++........+.+...|.+++|++|++......|.|+.-.|+|+|+..+...+||||||.+++.+
T Consensus 166 ~qv~V~GL~~~~~-~~~~~~~~~v~~~g~~~~~~~~DriY~~~~~~~~I~D~~~~R~I~l~~~~~~~~VvWNP~~~~s~~ 244 (287)
T COG0676 166 EQVEVSGLGGVCI-DKVLNAEEEVTQHGIVTFPGETDRIYLNPEPCSVIVDPALNRIITLEHQGHSSTVVWNPGHAKSSS 244 (287)
T ss_pred hheEeccCCceeh-hhhhhceeeccCCCceeeCCCccEEEEcCCCceEEecCcceEEEEEEecCCCCeEEECCCcccccc
Confidence 9999999987644 433322222223445889999999999988889999998899999999999999999999999999
Q ss_pred CCCCCCCCCcceEEeceeee-cCCeEeCCCCEEEEEEEEEE
Q 021878 247 LPDMGVDGYKTMLCVDSAAI-ENPIVLKPFEEWRGRQELST 286 (306)
Q Consensus 247 ~~d~~~~~~~~~vCvEp~~~-~g~~~L~pGe~~~~~~~i~~ 286 (306)
|+||++++|+.|+||||+.+ .....++|+ ..+..+.|.+
T Consensus 245 M~d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l~~~i~~ 284 (287)
T COG0676 245 MADMPDDGYQTMLCVETARVGPDLKVGEPG-PVRLALKISV 284 (287)
T ss_pred ccccccccceEEEEEeecccCcchhhcCCc-ceeeeeeeec
Confidence 99999999999999999987 466677777 6666666654
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=4.4e-49 Score=354.39 Aligned_cols=249 Identities=26% Similarity=0.482 Sum_probs=209.5
Q ss_pred ccEEEEECCC-ccEEEEe-cCCeEEEEEEeCCCeeeEEecCCCCCCCCCcccCcccEEccccCCC-----------CCCC
Q 021878 12 LPRIILTEPT-GSSAEVL-LYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNL-----------GLLE 78 (306)
Q Consensus 12 ~~~~~L~~~~-~~~a~v~-~~Ga~l~s~~~~~g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~-----------~~~~ 78 (306)
++.++|+++. +++++|. ++||+|+||+.+ |+|+||+++.+.++..+++|||+|+||||+||+ |+++
T Consensus 1 ~~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~~-g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp 79 (271)
T cd09025 1 YPTYELSDEEAGSRLRVVPERGGLITRWTVQ-GRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLK 79 (271)
T ss_pred CcEEEEEcCCCceEEEEecccCCEEEEEecC-CEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEecc
Confidence 3678899884 6899886 899999999985 799999999988988899999999999999997 3689
Q ss_pred CceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeecc
Q 021878 79 QHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALR 158 (306)
Q Consensus 79 ~HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~H 158 (306)
+|||+|++.|+|++.. +..+++|++.+++++.++|||+|+++++|+|.+++|+++++|+|+++++|||++|+|
T Consensus 80 ~HGf~r~~~W~v~~~~-------~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~H 152 (271)
T cd09025 80 QHGFARDLPWEVELLG-------DGAGLTLTLRDNEATRAVYPFDFELELTYRLAGNTLEIAQRVHNLGDQPMPFSFGFH 152 (271)
T ss_pred CcccccCCCEEEEecC-------CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeCCEEEEEEEEEECCCCcEEEEEecC
Confidence 9999999999998762 256899999887777889999999999999999999999999999999999999999
Q ss_pred ccccCCCcceEEEeccCCCccccccccccceeccCceeeecCccCeEEeCCCCeEEEEeCCCCcEEEEEecC-CCcEEEe
Q 021878 159 NYLSVSDISEVRVEGLETLDYFDYLMNKERFTEQADAITFDGEIDRVYLSTPTKIAIIDHEKKRTFELRKDG-MPDSVVW 237 (306)
Q Consensus 159 pYF~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~~~~~~~~l~v~~~~-~~~~vvw 237 (306)
|||++++.+++++.++. ..++|....... ....+...+..++|++|..++ .++|.+++.+++|.|..++ ++++|||
T Consensus 153 pYF~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~D~~y~~~~-~~~l~~~~~~~~i~l~~~~~~~~~vvw 229 (271)
T cd09025 153 PYFAVPDKAKLSLDLPP-TRCFDQKTDEEA-NTPGQFDETEEGVDLLFRPLG-PASLTDGARGLKITLDHDEPFSNLVVW 229 (271)
T ss_pred ceeeCCchhccEEEcCH-HHHhhhccCCcc-CCcccccccccccchhhccCC-ceEEEecCCCEEEEEecCCCcceEEEe
Confidence 99999988888888663 456664332211 111233445678999998776 7889998878999998774 8999999
Q ss_pred CCcccccccCCCCCCCCCcceEEeceeee--------cCCeEeCCCCEEEEEEEEE
Q 021878 238 NPWDKKAKALPDMGVDGYKTMLCVDSAAI--------ENPIVLKPFEEWRGRQELS 285 (306)
Q Consensus 238 ~p~~~~~~~~~d~~~~~~~~~vCvEp~~~--------~g~~~L~pGe~~~~~~~i~ 285 (306)
||. ++.|||||||++ .++++|+|||+++++++|.
T Consensus 230 ~p~--------------~~~~vCvEp~t~~~nA~n~~~~~~~L~PGe~~~~~~~i~ 271 (271)
T cd09025 230 TDK--------------GKDFVCLEPWTGPRNALNTGERLLLLPPGETEEASVRIQ 271 (271)
T ss_pred cCC--------------CCcEEEEecCCCCccccCcCCccEEECCCCEEEEEEEEC
Confidence 984 478999999953 5889999999999998873
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.4e-43 Score=319.88 Aligned_cols=244 Identities=20% Similarity=0.354 Sum_probs=189.8
Q ss_pred EEEECCCccEEEEecCCeEEEEEEeC-CCeeeEEecCCCCCCCCCcccCcccEEccccCCC-----------CCCCCceE
Q 021878 15 IILTEPTGSSAEVLLYGGQVVSWKNE-RREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNL-----------GLLEQHGF 82 (306)
Q Consensus 15 ~~L~~~~~~~a~v~~~Ga~l~s~~~~-~g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~-----------~~~~~HGf 82 (306)
++|+|++ ++|+|.++||+|+||+.+ +|+|+||+.+.++|.. ++|+||||+||+ |++++|||
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~~~~~g~e~l~~~~~~~~~~------~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIKDKKTGREYLWQGDPAYWGR------HAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEEeCCCCCEEEeCCChHHcCC------CCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 4789997 999999999999999985 5899999998777754 789999999998 46899999
Q ss_pred EeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 83 ARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 83 ar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
+|++.|+|.+.. +.+++|++.+++++..+|||+|+++++|+|.+++|+++++|+|+++++|||++|+||||+
T Consensus 74 ~r~~~w~v~~~~--------~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 145 (288)
T cd09024 74 ARDMEFEVVEQS--------DDSVTFELTDNEETLKVYPFDFELRVTYTLEGNTLKVTYEVKNPDDKTMPFSIGGHPAFN 145 (288)
T ss_pred cccCceEEEEcc--------CCEEEEEEccCcchhhcCCeEEEEEEEEEEeCCEEEEEEEEEcCCCCceEEEEeCCceEE
Confidence 999999998773 468999998877777899999999999999999999999999999999999999999999
Q ss_pred CCCcc-----e--EEEeccCCCcc--cc-c--ccccc-ceeccCceeeecCc-c-CeE--EeCCC-CeEEEEeCCCCcEE
Q 021878 163 VSDIS-----E--VRVEGLETLDY--FD-Y--LMNKE-RFTEQADAITFDGE-I-DRV--YLSTP-TKIAIIDHEKKRTF 224 (306)
Q Consensus 163 ~~~~~-----~--~~~~~~~~~~~--~d-~--l~~~~-~~~~~~~~~~~~~~-~-D~~--y~~~~-~~~~l~~~~~~~~l 224 (306)
+++.. + +++........ .| . ++.+. ........+.+... . |++ |.++. +.++|.+++.++.|
T Consensus 146 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 225 (288)
T cd09024 146 CPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKKPLLLNEGTLPLTHDLFDDDALIFDNLKSREVTLKSKKTGHGV 225 (288)
T ss_pred CCCCCCCcccceEEEECCcccceEEecCCccccccccccccCCCCeecCCHHHhcCCEEEEcCCCccEEEEEcCCCCCEE
Confidence 98542 4 34432111111 12 1 22111 11111223344332 2 343 34443 57889888778899
Q ss_pred EEEecCCCcEEEeCCcccccccCCCCCCCCCcceEEeceeee--------------cCCeEeCCCCEEEEEEEEEE
Q 021878 225 ELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI--------------ENPIVLKPFEEWRGRQELST 286 (306)
Q Consensus 225 ~v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~--------------~g~~~L~pGe~~~~~~~i~~ 286 (306)
+|..+++++++||+|.. .++|||||||++ .|+++|+|||+++.+++|++
T Consensus 226 ~l~~~~~~~l~vwt~~~-------------~~~~iciEP~t~~~da~~~~~~~~~~~gl~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 226 TVDFDDFPYLGIWSKPN-------------GAPFVCIEPWYGLADSVGFDGDLEDKEGINKLEPGESFEASYSITI 288 (288)
T ss_pred EEEeCCCCEEEEeCCCC-------------CCCEEEEcCCCCCCCcCCCCccccccCCCEEeCCCCEEEEEEEEEC
Confidence 99987799999999841 267999999985 28999999999999999874
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=5.3e-41 Score=302.42 Aligned_cols=227 Identities=17% Similarity=0.218 Sum_probs=179.0
Q ss_pred EecCCeEEEEEEeCC-CeeeEEecCCCCCCCCCcccCcccEEccccCCC-----------CCC---------CCceEEec
Q 021878 27 VLLYGGQVVSWKNER-REELLFMSSKSFWKPPKAIRGGIPVCFPQFGNL-----------GLL---------EQHGFARN 85 (306)
Q Consensus 27 v~~~Ga~l~s~~~~~-g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~-----------~~~---------~~HGfar~ 85 (306)
|+..||.|+||+..+ |.|+||+.+++.. ++.++|+|+||||+||+ |++ ++|||||+
T Consensus 5 v~~~Ga~l~sl~~~~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar~ 81 (273)
T cd09021 5 APELGGSIAALTSRGDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGWR 81 (273)
T ss_pred CCCCCceEEEEEeCCCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchhc
Confidence 469999999999853 5899998776542 23467899999999998 233 79999999
Q ss_pred cCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeeccccccCCC
Q 021878 86 RFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSD 165 (306)
Q Consensus 86 ~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~ 165 (306)
+.|+|++.. +++++|++..++.. +||+|+++++|+|.+++|+++++++|+++++|||++|+||||++++
T Consensus 82 ~~w~v~~~~--------~~~v~l~l~~~~~~---~P~~~~~~~~y~L~~~~L~i~~~~~N~~~~~~~~~~g~H~YF~~~~ 150 (273)
T cd09021 82 RPWQVVAAS--------ADSAELQLDHEADD---PPWAYRAEQRFHLAGDGLSITLSVTNRGDRPMPAGLGFHPYFPRTP 150 (273)
T ss_pred CceEEEecc--------CCeEEEEEecCCCC---CCEeEEEEEEEEEcCCCEEEEEEEEECCCCCceeeeecCccEecCC
Confidence 999998763 45788888765432 4999999999999999999999999999999999999999999998
Q ss_pred cceEEEeccCCCccc---cccccccceeccCceeee-------cCccCeEEeCCCCeEEEEeCCCCcEEEEEecC-CCcE
Q 021878 166 ISEVRVEGLETLDYF---DYLMNKERFTEQADAITF-------DGEIDRVYLSTPTKIAIIDHEKKRTFELRKDG-MPDS 234 (306)
Q Consensus 166 ~~~~~~~~~~~~~~~---d~l~~~~~~~~~~~~~~~-------~~~~D~~y~~~~~~~~l~~~~~~~~l~v~~~~-~~~~ 234 (306)
...+++.+.. .+. |.++.+.... ...++| ..++|++|....+.+.+.++.+++.|+|.+++ +|++
T Consensus 151 ~~~l~v~~~~--~~~~d~~~lp~~~~~~--~~~~df~~~~~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~~~~~~ 226 (273)
T cd09021 151 DTRLQADADG--VWLEDEDHLPTGLRPH--PPDWDFSQPRPLPDRWIDNCFTGWDGAALIWPPERGLALTIEADAPFSHL 226 (273)
T ss_pred CCEEEEecce--EEecCCCcCCCcccCC--CcchhhcCCCcCCcccccccccCCCcceEEecCCCCcEEEEecCCCCCEE
Confidence 7777776532 121 3343322111 011222 24899999876567888888889999999987 9999
Q ss_pred EEeCCcccccccCCCCCCCCCcceEEeceeee----------cCCeEeCCCCEEEEEEEEE
Q 021878 235 VVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI----------ENPIVLKPFEEWRGRQELS 285 (306)
Q Consensus 235 vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~----------~g~~~L~pGe~~~~~~~i~ 285 (306)
|||||+ +++|||||||++ .++++|+|||+++.+++|+
T Consensus 227 vvwtp~--------------~~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~~~~i~ 273 (273)
T cd09021 227 VVYRPP--------------GEDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSLSMRIT 273 (273)
T ss_pred EEEcCC--------------CCCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEEEEEEC
Confidence 999996 368999999973 3568999999999998874
No 7
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=2e-38 Score=288.82 Aligned_cols=247 Identities=14% Similarity=0.139 Sum_probs=188.1
Q ss_pred CccEEEEECCCccEEEEecCCeEEEEEEeCCCeeeEEecCCCCCCCCCcccCcccEEccccCCC-----------CCCC-
Q 021878 11 GLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNL-----------GLLE- 78 (306)
Q Consensus 11 ~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~~~g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~-----------~~~~- 78 (306)
.-..++|+|+. ++|+|..+||.|++|+.+ |.++++..+.+.+. + ..+.++||||+||| |+++
T Consensus 9 ~~~~~~l~~~~-~~v~i~~~Ga~i~~l~~~-~~~vv~~~~~~~~~---~-~~~g~~L~P~anRI~~g~f~~~G~~y~L~~ 82 (300)
T PRK15172 9 SGQTISLAAGD-YQATIVTVGAGLAELTFQ-GRHLVIPHKPEEMP---L-AHLGKVLIPWPNRIANGCYRYQGQEYQLPI 82 (300)
T ss_pred CcCEEEEeCCC-EEEEEecCCcEEEEEEEC-CEEEEecCCccccC---c-cccccEecccCCeecCCEEEECCEEEECCC
Confidence 45678999997 999999999999999985 78888766544332 1 22447999999998 3333
Q ss_pred --------CceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeC-CeEEEEEEEEeCCCC
Q 021878 79 --------QHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIPRVRNVDNK 149 (306)
Q Consensus 79 --------~HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~~v~N~~~~ 149 (306)
+||+++++.|+|.+.. +++++|++.+.+ ..+|||+|+++++|+|++ ++|+|+++++|.+++
T Consensus 83 N~~~~~~~lHG~~~~~~W~v~~~~--------~~~v~l~~~~~~--~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~ 152 (300)
T PRK15172 83 NEHVSKAAIHGLLAWRDWQISELT--------ATSVTLTAFLPP--SYGYPFMLASQVIYSLDAATGLSVEIASQNIGDV 152 (300)
T ss_pred CCCCCCcccCCCccCceEEEEEec--------CCEEEEEEEcCC--CCCCCEEEEEEEEEEEccCCeEEEEEEEEECCCC
Confidence 9999999999998763 457888887643 368999999999999985 899999999999999
Q ss_pred ceeeeeeccccccCCC--cceEEEeccCCCccc--c--ccccccceeccCceeeec-------CccCeEEeCCCC--eEE
Q 021878 150 AFSFMFALRNYLSVSD--ISEVRVEGLETLDYF--D--YLMNKERFTEQADAITFD-------GEIDRVYLSTPT--KIA 214 (306)
Q Consensus 150 ~~p~~~g~HpYF~~~~--~~~~~~~~~~~~~~~--d--~l~~~~~~~~~~~~~~~~-------~~~D~~y~~~~~--~~~ 214 (306)
+|||++|+||||+++. +.+.++.- +...++ | .++.+. ....+..++|. .++|++|..+.+ .++
T Consensus 153 ~~P~~~g~HpYFnl~~~~~~~~~L~~-~a~~~~~~d~~~iPtg~-~~~~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~ 230 (300)
T PRK15172 153 PAPYGVGIHPYLTCNLTSVDEYLLQL-PANQVLAVDEHANPTTL-HHVDELDLDFSQAKKIAATKIDHTFKTANDLWEVR 230 (300)
T ss_pred ceeeEEecCceEecCCCChhceEEEE-eCCeEEecCCCcCCCcc-ccCCCCCcCCCCCeECCCCCccCEEEcCCCceEEE
Confidence 9999999999999973 44444432 112222 2 233321 11111222332 269999987754 789
Q ss_pred EEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCCCCCcceEEeceeeec--------CCeEeCCCCEEEEEEEEEE
Q 021878 215 IIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAIE--------NPIVLKPFEEWRGRQELST 286 (306)
Q Consensus 215 l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~~--------g~~~L~pGe~~~~~~~i~~ 286 (306)
|.++.++++|++.++ .|++|||++... .+.+||||||+.. +.++|+|||+++.+++|+.
T Consensus 231 l~~~~~g~~l~~~~~-~~~~~vyt~~~~------------~~~~~ciEp~t~p~dA~n~~~g~~~L~pge~~~~~~~i~~ 297 (300)
T PRK15172 231 ITHPQQALSVSLCSD-QPWLQIYSGEKL------------QRQGLAVEPMSCPPNAFNSGIDLLLLEPGKTHRLFFNIGG 297 (300)
T ss_pred EEeCCCCeEEEEEcC-CCEEEEECCCCC------------CCCEEEEeCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEE
Confidence 999999999999986 699999998420 2579999999974 8999999999999998887
Q ss_pred Ee
Q 021878 287 VS 288 (306)
Q Consensus 287 ~~ 288 (306)
.+
T Consensus 298 ~~ 299 (300)
T PRK15172 298 QR 299 (300)
T ss_pred Ec
Confidence 53
No 8
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=8.7e-38 Score=282.11 Aligned_cols=237 Identities=19% Similarity=0.252 Sum_probs=182.5
Q ss_pred EEEEecCCeEEEEEEeCCCeeeEEecCCCCCCCCCcccCcccEEccccCCCC------------------CCCCceEEec
Q 021878 24 SAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLG------------------LLEQHGFARN 85 (306)
Q Consensus 24 ~a~v~~~Ga~l~s~~~~~g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~~------------------~~~~HGfar~ 85 (306)
+|+|..+||.|.||+.++++|+||..+........+.+++.|+||||+||+. .+++|||+|+
T Consensus 2 ~~~i~~~Ga~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~ 81 (284)
T cd01081 2 VAVIAPRGANIISLKVKGDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRN 81 (284)
T ss_pred EEEEeCcCcEEEEEEcCCCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeec
Confidence 6889999999999998634999999876554435567889999999999971 4789999999
Q ss_pred cCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeeccccccCCC
Q 021878 86 RFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSD 165 (306)
Q Consensus 86 ~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~ 165 (306)
++|+++... .++.+|+|++..++++. +|||+|+++++|+|.+++|+|+++|+|+++++|||++|+||||++++
T Consensus 82 ~~w~v~~~~------~~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~ 154 (284)
T cd01081 82 LPWRVVATD------EEEASVTLSYDLNDGPG-GYPFPLELTVTYTLDADTLTITFTVTNLGDEPMPFGLGWHPYFGLPG 154 (284)
T ss_pred CcEEEEEec------cCCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEeCCeEEEEEEEEeCCCCCcceeeecCceEecCC
Confidence 999999873 13568888888766554 89999999999999999999999999999999999999999999986
Q ss_pred c--ceEEEeccCCCccc--cc--cccccc-----eeccCceeee-cCccCeEEeCCC-----CeEEEEeCCCCcEEEEEe
Q 021878 166 I--SEVRVEGLETLDYF--DY--LMNKER-----FTEQADAITF-DGEIDRVYLSTP-----TKIAIIDHEKKRTFELRK 228 (306)
Q Consensus 166 ~--~~~~~~~~~~~~~~--d~--l~~~~~-----~~~~~~~~~~-~~~~D~~y~~~~-----~~~~l~~~~~~~~l~v~~ 228 (306)
. .++++.... ..+. |. ++.+.. +... ....+ ...+|++|.... ..++|.++..++.|++.+
T Consensus 155 ~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 232 (284)
T cd01081 155 VAIEDLRLRVPA-SKVLPLDDLLPPTGELEVPGEEDFR-LGRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVEFET 232 (284)
T ss_pred CcccceEEEecC-CEEEecCCccCCCCccCCccccccc-CCcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEEEeC
Confidence 4 556555322 2222 21 121111 0011 11222 347899997543 278899988889999988
Q ss_pred cCCCcEEEeCCcccccccCCCCCCCCCcceEEeceeee---------cCCeEeC-CCCEEEEEE
Q 021878 229 DGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI---------ENPIVLK-PFEEWRGRQ 282 (306)
Q Consensus 229 ~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~---------~g~~~L~-pGe~~~~~~ 282 (306)
+. |+++||+|+. ..+.++|||||++ .+.++|+ |||+++.++
T Consensus 233 ~~-~~~~v~t~~~------------~~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 233 GW-PFWQVYTGDG------------GRRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred CC-CEEEEECCCC------------CcCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 75 9999999852 1368999999986 2799999 999987664
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=6.3e-37 Score=277.42 Aligned_cols=236 Identities=21% Similarity=0.234 Sum_probs=174.5
Q ss_pred cEEEEecCCeEEEEEEeCCCeeeEEecCCCCCCCCCcccCcccEEccccCCC-----------CCCC---------CceE
Q 021878 23 SSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNL-----------GLLE---------QHGF 82 (306)
Q Consensus 23 ~~a~v~~~Ga~l~s~~~~~g~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~-----------~~~~---------~HGf 82 (306)
++|+|.++||.|++|+. +|+++||..+.... .... ..++||||+||+ |+++ +||+
T Consensus 1 ~~v~i~~~Ga~l~~~~~-~g~~il~~~~~~~~--~~~~--~g~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~ 75 (284)
T cd09022 1 YRAVVTEVGAGLRSLTV-GGRDLVEPYPADEV--PPGA--AGQVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGL 75 (284)
T ss_pred CEEEEEecCcEEEEEEE-CCEEEEecCCCccC--Cccc--cccEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCC
Confidence 47899999999999998 47999997765442 1112 347999999998 3455 9999
Q ss_pred EeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 83 ARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 83 ar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
+|++.|++++.. +++|+|++.+. ..++|||+|+++++|+|.+++|+|+++|+|+++++|||++|+||||+
T Consensus 76 ~~~~~w~v~~~~--------~~~v~l~l~~~--~~~~yP~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~ 145 (284)
T cd09022 76 VRWADWQLVEHT--------DSSVTLRTRIP--PQPGYPFTLELTVTYELDDDGLTVTLTATNVGDEPAPFGVGFHPYLS 145 (284)
T ss_pred eecceEEEeecc--------CCeEEEEEEeC--CccCCCceEEEEEEEEEcCCcEEEEEEEEeCCCCCeEeeeEecceEe
Confidence 999999998763 45788888763 35789999999999999999999999999999999999999999999
Q ss_pred CCCc--ceEEEeccCCCccc--c--ccccccceeccCceeee------c-CccCeEEeCCC------CeEEEEeCCCCcE
Q 021878 163 VSDI--SEVRVEGLETLDYF--D--YLMNKERFTEQADAITF------D-GEIDRVYLSTP------TKIAIIDHEKKRT 223 (306)
Q Consensus 163 ~~~~--~~~~~~~~~~~~~~--d--~l~~~~~~~~~~~~~~~------~-~~~D~~y~~~~------~~~~l~~~~~~~~ 223 (306)
+++. .+.+|.-.. ..++ | .++.+.. ...+..++| . .++|++|..+. ..++|.++.+ +.
T Consensus 146 l~~~~~~~~~L~~~a-~~~~~~d~~~lptg~~-~~~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~~~~~l~~~~~-~~ 222 (284)
T cd09022 146 AGGAPLDECTLTLPA-DTWLPVDERLLPTGTE-PVAGTPYDFRTGRRLGGTALDTAFTDLTRDADGRARARLTGPDG-RG 222 (284)
T ss_pred cCCCCcccEEEEEEC-ceEEecCCccCCCcCc-CCCCCCccCcCCccccCccccccccccccCCCCcEEEEEECCCC-CE
Confidence 9853 455443111 1121 2 2332221 111122233 1 27899997542 2678888876 89
Q ss_pred EEEEec-CCCcEEEeCCcccccccCCCCCCCCCcceEEeceeee--------cCCeEeCCCCEEEEEEEE
Q 021878 224 FELRKD-GMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI--------ENPIVLKPFEEWRGRQEL 284 (306)
Q Consensus 224 l~v~~~-~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~--------~g~~~L~pGe~~~~~~~i 284 (306)
|+|.++ ++|+++||+|.. + +....+.+||||||+. .+.++|+|||+++.+++|
T Consensus 223 l~l~~~~~~~~~~vyt~~~-----~---~~~~~~~~iclEP~~~~~da~n~~~~~~~L~pge~~~~~~~i 284 (284)
T cd09022 223 VELWADESFPWVQVFTADT-----L---PPPGRRRGLAVEPMTCPPNAFNSGTDLIVLAPGETHTASWGI 284 (284)
T ss_pred EEEEECCCCCEEEEECCCC-----C---CCCCCCCEEEEccCCCCCCcCcCCCCcEEECCCCEEEEEEeC
Confidence 999985 589999999842 1 0112368999999986 389999999999988875
No 10
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=9.1e-38 Score=284.62 Aligned_cols=260 Identities=23% Similarity=0.341 Sum_probs=175.2
Q ss_pred cEEEEECCCccEEEEecCCeEEEEEEeCC-CeeeEEecCC--CCCCCCCcccCcccEEccccCCC---------------
Q 021878 13 PRIILTEPTGSSAEVLLYGGQVVSWKNER-REELLFMSSK--SFWKPPKAIRGGIPVCFPQFGNL--------------- 74 (306)
Q Consensus 13 ~~~~L~~~~~~~a~v~~~Ga~l~s~~~~~-g~e~L~~~~~--~~~~~~~~irgg~p~lfP~~gr~--------------- 74 (306)
..++|+|+++++|+|+++||+|.||+.++ ++|+||+.++ .++... .+.|++||++||+
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~l~p~~~Ri~~g~~~~~g~~~~l~ 76 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWSNS----FGGPILFPWPNRIRNGRFTFDGKPYCLP 76 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHHST----CTTCEECSCSSEEGGGEEEETTEEEEBS
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcccc----cceeeeecccceEECCEEEECCEEEEee
Confidence 36899998559999999999999999864 5999999886 333321 1246666666664
Q ss_pred ----CCCCCceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCe-EEEEEEEEeCCCC
Q 021878 75 ----GLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGK-LTLIPRVRNVDNK 149 (306)
Q Consensus 75 ----~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~-L~i~~~v~N~~~~ 149 (306)
+.+++|||+|++.|+|+++. + +++++|++..+.++.++|||+|+++++|+|.+++ |+|+++|+|.+ +
T Consensus 77 ~~~~~~~~~HG~~~~~~w~v~~~~------~-~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~~~~L~i~~~v~n~~-~ 148 (300)
T PF01263_consen 77 WNGPYPNPIHGFARNKPWEVEEQS------E-DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDENGKLTITYEVTNDG-K 148 (300)
T ss_dssp SSBTTTBEETBSGGGSB-EEEEEE------E-TTEEEEEEEEEETTHHHSSSEEEEEEEEEEETTEEEEEEEEEEESS-S
T ss_pred eccCCCcCCCCCcccccEEEEEec------c-cceEEEEEEecCccceeeccceeeEEEEEECCCCeEEEEEEEEecC-c
Confidence 46789999999999999984 1 2667777766344446799999999999999999 99999999999 9
Q ss_pred ceeeeeeccccccCC----CcceEEEeccCCCcccc-cccccc-------ceecc-CceeeecC-ccCeEEeCCC-CeEE
Q 021878 150 AFSFMFALRNYLSVS----DISEVRVEGLETLDYFD-YLMNKE-------RFTEQ-ADAITFDG-EIDRVYLSTP-TKIA 214 (306)
Q Consensus 150 ~~p~~~g~HpYF~~~----~~~~~~~~~~~~~~~~d-~l~~~~-------~~~~~-~~~~~~~~-~~D~~y~~~~-~~~~ 214 (306)
+|||++|+||||+++ +...+++.+.....+.+ .++.+. .+... ...+.... .+|++|...+ ....
T Consensus 149 ~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~~~D~~f~~~~~~~~~ 228 (300)
T PF01263_consen 149 PMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFRQGRPIGDDIPGLDHCFVLDPPGRPV 228 (300)
T ss_dssp EEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGSSSEEECSSCTCEEEEEEESSSSEEE
T ss_pred cEEeeccccceEEcCCcceeeeEEEeccceeeecccccCCceeeecccCCccccccCeeecccccccceEEEcCCCccEE
Confidence 999999999999999 55566776422222212 122221 11111 11122122 6899998776 5555
Q ss_pred EEeCCCCcEEEEEec-CCCcEEEeCCcccccccCCCCCCCCCcceEEeceeee-cCCeEeCCCCEEEEEEEEE
Q 021878 215 IIDHEKKRTFELRKD-GMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI-ENPIVLKPFEEWRGRQELS 285 (306)
Q Consensus 215 l~~~~~~~~l~v~~~-~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~-~g~~~L~pGe~~~~~~~i~ 285 (306)
+.....++++.|... .+|++|||+|+.+. +.+...+-.....++|+|+... .++++|+|||+++.+++|+
T Consensus 229 ~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~~~~~~ 300 (300)
T PF01263_consen 229 IRLRSPGSGISLEFSTSFPWLVVWTPGFDP-KYICIEPIAIEPDFVPDEANNPGKGLIVLAPGESYSFSTRYT 300 (300)
T ss_dssp EEEETTTEEEEEEEEESSSEEEEEEETTSS-TEETTCEEECEEESECECCCECCHEGEEEETTSEEEEEEEEE
T ss_pred EEeecccceEEEEecCCCCcEEEECCCCcc-cccCCcccccCCCeeecccccCCCCCEEECCCCEEEEEEEEC
Confidence 555566666666543 58899999996532 0111111111223344444332 3689999999999999885
No 11
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=100.00 E-value=1.7e-35 Score=272.88 Aligned_cols=254 Identities=16% Similarity=0.255 Sum_probs=180.6
Q ss_pred EEEECCCccEEEEecCCeEEEEEEeC--CC--eeeEEecC-CCCCCCCCcccCcccEEccccCCC-----------CCCC
Q 021878 15 IILTEPTGSSAEVLLYGGQVVSWKNE--RR--EELLFMSS-KSFWKPPKAIRGGIPVCFPQFGNL-----------GLLE 78 (306)
Q Consensus 15 ~~L~~~~~~~a~v~~~Ga~l~s~~~~--~g--~e~L~~~~-~~~~~~~~~irgg~p~lfP~~gr~-----------~~~~ 78 (306)
++|+|+++++|+|..+||.|.||+.+ +| +++||..+ .+.|....+.. .+++.||+||| |+++
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--g~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYF--GATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCcc--CCcccCcCCeecCCEEEECCEEEEcc
Confidence 67999856999999999999999963 23 78999874 45565433443 34678899997 3344
Q ss_pred C-----------ceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeC-CeEEEEEEEEeC
Q 021878 79 Q-----------HGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIPRVRNV 146 (306)
Q Consensus 79 ~-----------HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~~v~N~ 146 (306)
. |||+| +.|++.... +++|+|++.++ +...+|||+|+++++|+|.+ ++|+|+++++|
T Consensus 80 ~Ne~~~~LHGg~~G~~~-~~w~~~~~~--------~~~v~l~~~~~-~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~- 148 (326)
T cd09019 80 ANEGPNHLHGGPKGFDK-RVWDVEEVE--------ENSVTFSLVSP-DGEEGFPGNLTVTVTYTLTDDNELTIEYEATT- 148 (326)
T ss_pred CCCCCcccCCCCccccC-cEEeEEecc--------CCEEEEEEECC-cccCCCCeEEEEEEEEEECCCCEEEEEEEEEe-
Confidence 3 77778 499998763 66899999876 44689999999999999998 89999999997
Q ss_pred CCCceeeeeeccccccCCC-----cceEEEeccCCCccc--c--ccccccceeccCceee------------------ec
Q 021878 147 DNKAFSFMFALRNYLSVSD-----ISEVRVEGLETLDYF--D--YLMNKERFTEQADAIT------------------FD 199 (306)
Q Consensus 147 ~~~~~p~~~g~HpYF~~~~-----~~~~~~~~~~~~~~~--d--~l~~~~~~~~~~~~~~------------------~~ 199 (306)
+++|||++|+||||+++. +.+.+|.- +...++ | .++.+..........+ -.
T Consensus 149 -~~~~p~~~g~HpyFnl~~~~~~~~~~~~L~~-~a~~~~~~d~~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~ 226 (326)
T cd09019 149 -DKPTPVNLTNHSYFNLAGEGSGDILDHELQI-NADRYLPVDEELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQLKLG 226 (326)
T ss_pred -CCCeEecccceeeEecCCCCCCCccceEEEE-ecCcEEeeCCCCCcCCCceecCCCCccccCccCccccccchhhcccC
Confidence 599999999999999983 33444431 111222 2 2332211100000011 12
Q ss_pred CccCeEEe--CC----CCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCC--CCCcceEEeceeee-----
Q 021878 200 GEIDRVYL--ST----PTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGV--DGYKTMLCVDSAAI----- 266 (306)
Q Consensus 200 ~~~D~~y~--~~----~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~~~d~~~--~~~~~~vCvEp~~~----- 266 (306)
.++|++|. .+ ...++|.++.++++|+|.++ .|++|||++...... .. ..+ ...+.+||||||+.
T Consensus 227 ~~~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~~-~~-~~~~~~~~~~~iclEpq~~pdA~n 303 (326)
T cd09019 227 GGYDHNFVLDKGGGKLRPAARLTSPESGRKLEVYTT-QPGVQFYTGNFLDGT-PG-GGGKVYGKRSGFCLETQHFPDAPN 303 (326)
T ss_pred CCcceEEEECCCCCccceeEEEEcCCCCcEEEEecC-CCEEEEEeCCCCCcc-cC-CCCcEeCCCCEEEEeccCCCCccc
Confidence 47999996 32 23688999999999999886 899999998532110 00 011 13467999999975
Q ss_pred ---cCCeEeCCCCEEEEEEEEEE
Q 021878 267 ---ENPIVLKPFEEWRGRQELST 286 (306)
Q Consensus 267 ---~g~~~L~pGe~~~~~~~i~~ 286 (306)
.+.++|+|||+++..++|+|
T Consensus 304 ~~~~g~~~L~pge~~~~~~~y~f 326 (326)
T cd09019 304 HPNFPSIILRPGETYRHTTVYRF 326 (326)
T ss_pred ccCCCCeEECCCCEEEEEEEEEC
Confidence 37899999999999998874
No 12
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-34 Score=264.91 Aligned_cols=253 Identities=19% Similarity=0.252 Sum_probs=181.7
Q ss_pred CCCCccEEEEECCCccEEEEecCCeEEEEEEeCCCeeeEEecCC--CCCCCCCcccC-cccEEccccCCC----------
Q 021878 8 DKDGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSK--SFWKPPKAIRG-GIPVCFPQFGNL---------- 74 (306)
Q Consensus 8 ~~~~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~~~g~e~L~~~~~--~~~~~~~~irg-g~p~lfP~~gr~---------- 74 (306)
.......+++.|+.+..++|..+||.|++|+.+ ++++++..+. .+.. .++ +.++|+||+|||
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~~-~~~v~l~~~~~~~~~~----~~~~~ga~l~p~anRI~~g~f~~~G~ 82 (308)
T COG2017 8 DGQPVRLLTLGNGGGMVVTVPDWGATLTSLRVN-GRNLLLGFDDAESYPA----TRGYGGAILGPYANRISNGRFTLDGK 82 (308)
T ss_pred CCCceEEEEEeCCCeEEEEEccCCcEEEEEEEC-CceEEeecCCHHHhcc----ccccccceecCccCcccCCEEEECCE
Confidence 455567888989877888889999999999994 7888765542 2221 222 678999999998
Q ss_pred -CCCC-------CceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeC
Q 021878 75 -GLLE-------QHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNV 146 (306)
Q Consensus 75 -~~~~-------~HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~ 146 (306)
|+++ +||+++...|++..... .+...++|.+.+. ..+|||+|+++++|+|.+++|+|+|+++|.
T Consensus 83 ~y~L~~N~~~~~lHG~~~~~~~~v~~~~~-----~~~~~~~l~~~~~---~~gyP~~l~~~vtY~L~~~~L~v~~~~~n~ 154 (308)
T COG2017 83 TYQLPPNEGGNALHGGARDFDWQVWEAEE-----DDNAEFSLVLRDG---EDGYPGNLEATVTYTLNEDGLTVTYEVTND 154 (308)
T ss_pred EEEeCCCCCCccccCCccCCCeeEEEEEe-----ccCCEEEEEeccc---CCCCCceEEEEEEEEEcCCCEEEEEEEEeC
Confidence 3454 99999999999998852 1122566666543 346999999999999999889999999999
Q ss_pred CCCceeeeeeccccccCCCcce---EEEeccCCCccc---c--cccccc----ceeccCceeeecCccCeEEeCC-----
Q 021878 147 DNKAFSFMFALRNYLSVSDISE---VRVEGLETLDYF---D--YLMNKE----RFTEQADAITFDGEIDRVYLST----- 209 (306)
Q Consensus 147 ~~~~~p~~~g~HpYF~~~~~~~---~~~~~~~~~~~~---d--~l~~~~----~~~~~~~~~~~~~~~D~~y~~~----- 209 (306)
++++|||++|+||||+++...+ ..... ...++ + .++.+. .... ...+.....+|+.|...
T Consensus 155 ~~~~~p~~~g~HpYFnl~~~~~~~~~~~~~--~~~~l~~~~~~~ip~~~~~~~~~~~-~~~~~~~~~~d~~f~~~~~~~~ 231 (308)
T COG2017 155 GDEPTPFNLGNHPYFNLPGDGRLEHILAIA--SDYYLPVDDEEPIPTGDIKREPKPL-EDDFAADDPYDHAFLLNGARGL 231 (308)
T ss_pred CCCcceecccccceEecCCCCCcccEEEec--CCceEEcccCCCCCccccccccccc-ccccccccccccceeeccccCC
Confidence 9999999999999999996532 22211 11122 1 111111 1100 01111112358877533
Q ss_pred CCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCCCCCcceEEeceeee---------cCCeEeCCCCEEEE
Q 021878 210 PTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI---------ENPIVLKPFEEWRG 280 (306)
Q Consensus 210 ~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~---------~g~~~L~pGe~~~~ 280 (306)
...+.|.++.++++|+|.++ .|.++||+.... ..+.++|||||+. .+..+|+|||+++.
T Consensus 232 ~~~a~l~~~~~~~~l~v~t~-~p~~~~yt~~~~-----------~~~~~~clEp~~~~pdA~n~~~~~~~~L~pGe~~~~ 299 (308)
T COG2017 232 KPAARLYDPDSGLSLEVETD-EPFVQLYTGNFL-----------AGRDGLCLEPQSGLPDAFNHPGFGLIVLEPGETYSA 299 (308)
T ss_pred cceEEEEcCCCCeEEEEEeC-CCeEEEEeCCCC-----------CcCCeEEeeeccCCCCcCCCCCcccceeCCCCEEEE
Confidence 34889999999999999987 788888875321 0368999999993 36777999999999
Q ss_pred EEEEEEEe
Q 021878 281 RQELSTVS 288 (306)
Q Consensus 281 ~~~i~~~~ 288 (306)
.++|++..
T Consensus 300 ~~~~~~~~ 307 (308)
T COG2017 300 ETRFRFES 307 (308)
T ss_pred EEEEEEec
Confidence 99999864
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=100.00 E-value=2.5e-32 Score=252.19 Aligned_cols=265 Identities=14% Similarity=0.202 Sum_probs=181.9
Q ss_pred CCCccEEEEECCCccEEEEecCCeEEEEEEeC--CC--eeeEEecCCC-CCCCCCcccCcccEEccccCCC---------
Q 021878 9 KDGLPRIILTEPTGSSAEVLLYGGQVVSWKNE--RR--EELLFMSSKS-FWKPPKAIRGGIPVCFPQFGNL--------- 74 (306)
Q Consensus 9 ~~~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~~--~g--~e~L~~~~~~-~~~~~~~irgg~p~lfP~~gr~--------- 74 (306)
.+.+..++|+|+. ++|+|..+||.|+||+.+ +| ++++-..+.. .+....+.. | +++.||+|||
T Consensus 6 ~~~~~~~~L~n~~-l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~~-G-a~lgp~anRI~~g~~~~~G 82 (337)
T PLN00194 6 EEKPGIYELKNGN-ISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPYF-G-AIVGRVANRIKGAKFTLNG 82 (337)
T ss_pred CCeeEEEEEEeCC-EEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCcc-C-CeeCCCCCceeCCEEEECC
Confidence 4557789999986 999999999999999862 34 5676443322 122112333 3 4599999998
Q ss_pred --CCCC-------CceEEe---ccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeC-CeEEEEE
Q 021878 75 --GLLE-------QHGFAR---NRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIP 141 (306)
Q Consensus 75 --~~~~-------~HGfar---~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~ 141 (306)
|+++ +||+.+ .+.|+|+... ++.+.+|+|.+.+. +...+|||+|+++++|+|.+ ++|+|++
T Consensus 83 ~~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~-----~~~~~~v~~~l~~~-~~~~gyP~~~~~~v~Y~L~~~~~L~i~~ 156 (337)
T PLN00194 83 VTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYK-----KGEKPSITFKYHSF-DGEEGFPGDLSVTVTYTLLSSNTLRLDM 156 (337)
T ss_pred EEEEeccCCCCcccCCCCcccCceEEeEEEec-----cCCCcEEEEEEECC-CcCCCCCEEEEEEEEEEECCCCeEEEEE
Confidence 2333 697543 4899998764 12346899999875 34679999999999999985 8999999
Q ss_pred EEEeCCCCceeeeeeccccccCCC-----cceEEEeccCCCccc--c--ccccccceeccCceeee-------------c
Q 021878 142 RVRNVDNKAFSFMFALRNYLSVSD-----ISEVRVEGLETLDYF--D--YLMNKERFTEQADAITF-------------D 199 (306)
Q Consensus 142 ~v~N~~~~~~p~~~g~HpYF~~~~-----~~~~~~~~~~~~~~~--d--~l~~~~~~~~~~~~~~~-------------~ 199 (306)
+++|. +++|||++|+||||+++. +.+.+++- ....++ | .++.+......+..++| .
T Consensus 157 ~~~n~-~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~i-~a~~~~~~d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~~ 234 (337)
T PLN00194 157 EAKPL-NKATPVNLAQHTYWNLAGHNSGDILSHKIQI-FGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINELP 234 (337)
T ss_pred EEEEC-CCCeEEEccccceEEcCCCCCCCcCCeEEEE-ecCCEEEeCCCcCcCCceeeCCCCCcccCCCcCcchhhcccc
Confidence 99999 999999999999999974 33333331 111222 1 23332111111111111 1
Q ss_pred CccCeEEeCC-------CCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCC--CCCcceEEeceeee----
Q 021878 200 GEIDRVYLST-------PTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGV--DGYKTMLCVDSAAI---- 266 (306)
Q Consensus 200 ~~~D~~y~~~-------~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~~~d~~~--~~~~~~vCvEp~~~---- 266 (306)
.++|++|... ...++|.++.++++|+|.++ .|.+|||++..-.. . ....+ ...+.+||||||..
T Consensus 235 ~g~Dh~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~v~vyT~n~~~~-~-~~~~~~~~~~~~~i~lEpq~~pda~ 311 (337)
T PLN00194 235 KGYDHNYVLDGEEKEGLKKAAKVKDPKSGRVLELWTN-APGMQFYTSNYVNG-V-KGKGGAVYGKHAGLCLETQGFPDAV 311 (337)
T ss_pred CCcceEEEECCCCcccceeeEEEEcCCCCCEEEEEeC-CCEEEEECCCCCCC-c-cCCCCCEeCCCCEEEEeccCCCCcc
Confidence 3799999621 22688999888999999987 69999999752110 0 00111 12357999999975
Q ss_pred ----cCCeEeCCCCEEEEEEEEEEE
Q 021878 267 ----ENPIVLKPFEEWRGRQELSTV 287 (306)
Q Consensus 267 ----~g~~~L~pGe~~~~~~~i~~~ 287 (306)
.+.++|+|||.+...+.++|.
T Consensus 312 n~~~~~~~~L~pge~~~~~t~y~f~ 336 (337)
T PLN00194 312 NQPNFPSVVVNPGEKYKHTMLFEFS 336 (337)
T ss_pred cCCCCCCeEECCCCEEEEEEEEEEe
Confidence 268899999999999999884
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=100.00 E-value=3.4e-32 Score=251.28 Aligned_cols=257 Identities=15% Similarity=0.193 Sum_probs=177.4
Q ss_pred CccEEEEECCCccEEEEecCCeEEEEEEeC---CCeeeEEecC-CCCCCCCCcccCcccEEccccCCC-----------C
Q 021878 11 GLPRIILTEPTGSSAEVLLYGGQVVSWKNE---RREELLFMSS-KSFWKPPKAIRGGIPVCFPQFGNL-----------G 75 (306)
Q Consensus 11 ~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~~---~g~e~L~~~~-~~~~~~~~~irgg~p~lfP~~gr~-----------~ 75 (306)
.+..++|+|.+|++|+|..+||.|+||+.+ ..++++...+ ...+....+.. | .++.||+||| |
T Consensus 3 ~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~~~~~~~-G-a~igp~anRI~~g~f~~~G~~y 80 (335)
T TIGR02636 3 PAQLITLTNNNGMTISFMDIGATWLSCQVPLAGELREVLLGFASMEEYYKQDAYL-G-ATVGRYANRIANGSFEIDGETY 80 (335)
T ss_pred eeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCCCccceEECCCCHHHHhhCCCcc-C-CCcCCCCceecCCEEEECCEEE
Confidence 356789999888999999999999999952 2356664333 22222222222 2 3588999998 2
Q ss_pred C-------CCCceEE---eccCcEEEe-eCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEe-CCeEEEEEEE
Q 021878 76 L-------LEQHGFA---RNRFWSLDE-DASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISIS-PGKLTLIPRV 143 (306)
Q Consensus 76 ~-------~~~HGfa---r~~~W~v~~-~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~-~~~L~i~~~v 143 (306)
+ ..+||+. +.+.|++.. . +..+|+|++.+.+ ...+||++++++++|+|+ +++|+|++++
T Consensus 81 ~L~~N~~~n~lHGg~~G~~~~~W~v~~~~--------~~~~v~l~~~~~~-~~~gyPg~l~~~vtY~L~~~~~L~i~~~a 151 (335)
T TIGR02636 81 QLSINQGGNCLHGGPEGFDKRRWNIEELQ--------EEVQVKFSLESPD-GDQGFPGNLTVSVTYTLTDDNELTIEYEA 151 (335)
T ss_pred EeccCCCCcccCCCCccccccEEeEeeec--------CCCEEEEEEECCC-cCCCCCeEEEEEEEEEECCCCEEEEEEEE
Confidence 2 3499998 779999976 4 2568999998744 468999999999999995 5899999999
Q ss_pred EeCCCCceeeeeeccccccCCCc------ce--EEEeccCCCccc--c--ccccccceeccCceeee-------------
Q 021878 144 RNVDNKAFSFMFALRNYLSVSDI------SE--VRVEGLETLDYF--D--YLMNKERFTEQADAITF------------- 198 (306)
Q Consensus 144 ~N~~~~~~p~~~g~HpYF~~~~~------~~--~~~~~~~~~~~~--d--~l~~~~~~~~~~~~~~~------------- 198 (306)
+ ++++|||++|+||||+++.. .+ +++.. ..++ | .++.+......+..++|
T Consensus 152 ~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~i~a---~~~~~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~ 226 (335)
T TIGR02636 152 T--TDKATPFNLTNHVYFNLDGADAGSDVLSHELQLNA---DRYLPLDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLAN 226 (335)
T ss_pred E--ECCceEEeccccceEEcCCCCCCCChhceEEEEEC---CcEEEeCCCcCcCCceecCCCCccccCCCcCcCcccccc
Confidence 7 89999999999999999752 23 34432 1221 1 22222111111111111
Q ss_pred -----cCccCeEEeCC------CCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCC--CCCcceEEeceee
Q 021878 199 -----DGEIDRVYLST------PTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGV--DGYKTMLCVDSAA 265 (306)
Q Consensus 199 -----~~~~D~~y~~~------~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~~~d~~~--~~~~~~vCvEp~~ 265 (306)
..++|++|... ...++|.++.+++.|+|.++ .|.+|||++..-.. .. ...+ ...+.+||||||+
T Consensus 227 ~~~~~~~g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~-~~-~~~g~~~~~~~gialE~q~ 303 (335)
T TIGR02636 227 DQQQLAKGYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFTT-QPALQIYTGNFLAG-TP-NRGGKKYVDHAGLALETQF 303 (335)
T ss_pred cccccCCCcceEEEECCCCCCCceeEEEEcCCCCcEEEEecC-CCEEEEecCCCcCC-cc-CCCCcEeCCCcEEEEeccc
Confidence 12799999621 22578999999999999986 89999999842110 00 0111 1246799999998
Q ss_pred e--------cCCe--EeCCCCEEEEEEEEEE
Q 021878 266 I--------ENPI--VLKPFEEWRGRQELST 286 (306)
Q Consensus 266 ~--------~g~~--~L~pGe~~~~~~~i~~ 286 (306)
. .+.+ +|+|||+++.++.|+|
T Consensus 304 ~pd~~n~~~~~~~~~~L~pge~~~~~t~y~f 334 (335)
T TIGR02636 304 LPDSPNHPEWGDISCILSPGQEYQHQTRYQF 334 (335)
T ss_pred CCCcccccCCCCCceEECCCCEEEEEEEEEE
Confidence 6 2433 5999999999999987
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.98 E-value=3.4e-30 Score=237.89 Aligned_cols=260 Identities=15% Similarity=0.194 Sum_probs=178.1
Q ss_pred CCCccEEEEECCCccEEEEecCCeEEEEEEe--CCC--eeeEEec-CCCCCCCCCcccCcccEEccccCCC---------
Q 021878 9 KDGLPRIILTEPTGSSAEVLLYGGQVVSWKN--ERR--EELLFMS-SKSFWKPPKAIRGGIPVCFPQFGNL--------- 74 (306)
Q Consensus 9 ~~~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~--~~g--~e~L~~~-~~~~~~~~~~irgg~p~lfP~~gr~--------- 74 (306)
.+.+..++|+|.++++|+|..+||.|+||+. ++| ++++-.. +...+....+..| .++.||+|||
T Consensus 6 g~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~G--a~iGr~anRI~~g~f~~~G 83 (342)
T PRK11055 6 GQPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLG--ASVGRYANRIANSRFTLDG 83 (342)
T ss_pred CCeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccC--ceeCCcCCcccCCEEEECC
Confidence 3457789999987899999999999999986 245 5766332 2222322222322 3688999998
Q ss_pred --C-------CCCCceEE---eccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeC-CeEEEEE
Q 021878 75 --G-------LLEQHGFA---RNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GKLTLIP 141 (306)
Q Consensus 75 --~-------~~~~HGfa---r~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~ 141 (306)
| ...+||.. +.+.|+++... .++|+|++.+. +...+||++++++++|+|++ ++|+|++
T Consensus 84 ~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~--------~~~v~l~~~~~-~g~~GyPg~l~~~vtY~L~~~~~l~i~~ 154 (342)
T PRK11055 84 ETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN--------DRQVTFSLSSP-DGDQGFPGNLGATVTYRLTDDNRVSITY 154 (342)
T ss_pred EEEEcccCCCCcccCCCCcccCCcEEEEEEcc--------CCEEEEEEECC-CcCCCCCeEEEEEEEEEEcCCCeEEEEE
Confidence 2 23589874 46899998763 46899999874 44679999999999999987 5899988
Q ss_pred EEEeCCCCceeeeeeccccccCCC------cce--EEEeccCCCccc--c--ccccccceeccCceee------------
Q 021878 142 RVRNVDNKAFSFMFALRNYLSVSD------ISE--VRVEGLETLDYF--D--YLMNKERFTEQADAIT------------ 197 (306)
Q Consensus 142 ~v~N~~~~~~p~~~g~HpYF~~~~------~~~--~~~~~~~~~~~~--d--~l~~~~~~~~~~~~~~------------ 197 (306)
+++ +++++||++|+||||+++. +.+ +++.. ..++ | .++.++.....+..++
T Consensus 155 ~a~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~a---~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~ 229 (342)
T PRK11055 155 RAT--VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQINA---DEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFL 229 (342)
T ss_pred EEE--cCCCeEEeccccceEECCCCCCCCCccceEEEEec---CCEEEECcccCccCcEeccCCCcccccCCcCcCcccc
Confidence 875 7999999999999999974 222 34432 1221 2 2332211110011111
Q ss_pred ------ecCccCeEEeCC------CCeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCC--CCCcceEEece
Q 021878 198 ------FDGEIDRVYLST------PTKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGV--DGYKTMLCVDS 263 (306)
Q Consensus 198 ------~~~~~D~~y~~~------~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~~~d~~~--~~~~~~vCvEp 263 (306)
...++|++|... ...+.|.++.++++|+|.++ .|.+|||++..-.. . ....+ ...+..|||||
T Consensus 230 ~~~~~~~~~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~lqvYT~n~~~~-~-~~~~g~~~~~~~gialE~ 306 (342)
T PRK11055 230 ADDDQQKVKGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYTT-APALQFYSGNFLAG-T-PSRGGGPYADYAGLALES 306 (342)
T ss_pred cchhcccCCCcceEEEECCCCcccceeEEEEcCCCCeEEEEEcC-CCEEEEecCCccCC-c-cCCCCcEeCCCceEEEEc
Confidence 114799999531 12578889899999999986 89999999752110 0 01111 22357999999
Q ss_pred eee--------c--CCeEeCCCCEEEEEEEEEEE
Q 021878 264 AAI--------E--NPIVLKPFEEWRGRQELSTV 287 (306)
Q Consensus 264 ~~~--------~--g~~~L~pGe~~~~~~~i~~~ 287 (306)
|.. . +.++|+|||.++..+.++|.
T Consensus 307 q~~Pda~n~~~f~~~~~~L~pg~~y~~~t~y~f~ 340 (342)
T PRK11055 307 QFLPDSPNHPEWPQPDCILKPGEEYRSLTEYQFI 340 (342)
T ss_pred ccCCCcccccCCCCCCeEECCCCEEEEEEEEEEE
Confidence 975 2 38899999999999999884
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.97 E-value=2.1e-28 Score=227.04 Aligned_cols=267 Identities=12% Similarity=0.033 Sum_probs=180.5
Q ss_pred ecCCCCccEEEEECCCccEEEEecCCeEEEEEEe--CC-C--eeeEEecC--CCCCCCCCcccCcccEEccccCCC----
Q 021878 6 VHDKDGLPRIILTEPTGSSAEVLLYGGQVVSWKN--ER-R--EELLFMSS--KSFWKPPKAIRGGIPVCFPQFGNL---- 74 (306)
Q Consensus 6 ~~~~~~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~--~~-g--~e~L~~~~--~~~~~~~~~irgg~p~lfP~~gr~---- 74 (306)
++-+.-...++|+|++ ++++|..+||.|+|++. ++ | ++++-..+ .+.+....+.. | .++.||+|||
T Consensus 7 ~~~~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y~-G-a~iGr~AnRI~~G~ 83 (376)
T PTZ00485 7 VEPYGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDYM-G-ATVGRCAGRVAGGV 83 (376)
T ss_pred EEecCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCcc-C-cEeCCCCCeEECCE
Confidence 3445667789999997 99999999999999986 22 5 56764332 23333222332 3 3578999998
Q ss_pred -------CC-----------CCCceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEe---
Q 021878 75 -------GL-----------LEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISIS--- 133 (306)
Q Consensus 75 -------~~-----------~~~HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~--- 133 (306)
|+ .+.+||.+ +.|++.... +.+..+|+|.+.+ ++..++||++++++++|+|.
T Consensus 84 f~ldG~~YqL~~Neg~n~LHGG~~gf~~-~~W~v~~~~-----~~~~~~V~f~~~~-~dg~~GfPG~l~v~vtYtL~~~~ 156 (376)
T PTZ00485 84 FTLDGVKYYTQKNRGENTCHCGDDAYHK-KHWGMKLIE-----TANVIGVRFNYTS-PHMENGFPGELVSKVTYSIERSK 156 (376)
T ss_pred EEECCEEEEccCCCCCcccCCCCCccce-eeeeEEEec-----cCCCcEEEEEEEC-CCcCCCCCEEEEEEEEEEEecCC
Confidence 11 23458876 999986432 1234589999987 55678999999999999996
Q ss_pred CCeEEEE---EEEEeCCCCceeeeeeccccccCCC-----------------cc--eEEEeccCCCccc--c--cccccc
Q 021878 134 PGKLTLI---PRVRNVDNKAFSFMFALRNYLSVSD-----------------IS--EVRVEGLETLDYF--D--YLMNKE 187 (306)
Q Consensus 134 ~~~L~i~---~~v~N~~~~~~p~~~g~HpYF~~~~-----------------~~--~~~~~~~~~~~~~--d--~l~~~~ 187 (306)
+++|+|+ ++++|++++++|+++++|+||+++. +. .+++.. ..++ | .++.+.
T Consensus 157 ~~~L~i~y~a~~~~n~~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~a---~~~l~~de~~IPTG~ 233 (376)
T PTZ00485 157 PNVLKTIYDSYIPETSPADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVPA---SRVAEADRMAIPTGE 233 (376)
T ss_pred CCEEEEEEEEEeccccCCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEec---CcEEEeCcccCccCc
Confidence 5889999 7778999999999999999999963 11 234432 1221 1 222221
Q ss_pred -------ceecc-----Ccee----ee---cCccCeEEeC-C------CCeEEEEeCCCCcEEEEEecCCCcEEEeCCcc
Q 021878 188 -------RFTEQ-----ADAI----TF---DGEIDRVYLS-T------PTKIAIIDHEKKRTFELRKDGMPDSVVWNPWD 241 (306)
Q Consensus 188 -------~~~~~-----~~~~----~~---~~~~D~~y~~-~------~~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~ 241 (306)
.+... ++.+ .+ ..++|++|.- . ...+.|.++.+|++|+|.++ .|.+|||++..
T Consensus 234 i~~v~~t~fDfr~~~~ig~~~~~~~~~~~~~~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T~-~P~~qiYT~n~ 312 (376)
T PTZ00485 234 FLSVEGTGLDFRQGRVIGDCIDDVALLDRDPCGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYST-FPCMWVYTANN 312 (376)
T ss_pred eeccCCCCccCcCCcccchhhhhhhhhcccCCCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEEC-CCEEEEECCCC
Confidence 11000 0111 11 1479999953 2 11478999999999999997 99999999753
Q ss_pred cccccCCCCCC--CCCcceEEeceeee---------cCCeEeCCCCE-EEEEEEEEEE
Q 021878 242 KKAKALPDMGV--DGYKTMLCVDSAAI---------ENPIVLKPFEE-WRGRQELSTV 287 (306)
Q Consensus 242 ~~~~~~~d~~~--~~~~~~vCvEp~~~---------~g~~~L~pGe~-~~~~~~i~~~ 287 (306)
-... .....+ ...+..||+|||.. .+.++|+|||. ++..+.++|.
T Consensus 313 l~~~-~~~~~g~~~~~~~giclE~Q~~PDa~n~~~~fp~~vl~pge~~~~~~t~y~f~ 369 (376)
T PTZ00485 313 KPLP-ASGGPGQRYARWTGMGLEPQYFPDVANHYPKYPSCIVRRGERRFTETILNEFT 369 (376)
T ss_pred CCcc-ccCCCCcCcCCCCEEEEeccCCCCcccccCCCCCeEECCCCeEEEEEEEEEEE
Confidence 2110 001111 23457899999975 36789999999 8888888873
No 17
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=4.1e-22 Score=176.66 Aligned_cols=262 Identities=15% Similarity=0.229 Sum_probs=175.1
Q ss_pred CCCccEEEEECCCccEEEEecCCeEEEEEEeC--CC--eee-EEecCCCCCCC-CCcccCcccEEccccCCC--------
Q 021878 9 KDGLPRIILTEPTGSSAEVLLYGGQVVSWKNE--RR--EEL-LFMSSKSFWKP-PKAIRGGIPVCFPQFGNL-------- 74 (306)
Q Consensus 9 ~~~~~~~~L~~~~~~~a~v~~~Ga~l~s~~~~--~g--~e~-L~~~~~~~~~~-~~~irgg~p~lfP~~gr~-------- 74 (306)
.+.+..++|.|+++++|+|..+||.|+|++.. .| .|+ |-..+-+.+.. .++.-|. .+--++|||
T Consensus 17 ~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGa--tvGRvANRI~~G~F~ld 94 (353)
T KOG1604|consen 17 KQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGA--TVGRVANRIAKGKFSLD 94 (353)
T ss_pred cCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecc--eehhhhhhcccceEEEC
Confidence 45577899999989999999999999999963 23 345 43333222322 2222221 133444554
Q ss_pred ---C-------CCCCc----eEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeC-CeEEE
Q 021878 75 ---G-------LLEQH----GFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP-GKLTL 139 (306)
Q Consensus 75 ---~-------~~~~H----Gfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i 139 (306)
| +..+| ||.+ ..|++..... +..++|...+ +++.++||++.++.++|+|.+ +.|.+
T Consensus 95 gk~y~lt~N~g~n~lHgg~~gf~~-~~w~v~~~~~-------~~~i~f~~~s-~dg~eg~PG~l~V~vtYtLn~~n~l~i 165 (353)
T KOG1604|consen 95 GKPYKLTVNNGKNTLHGGIKGFDK-VIWEVVKHQP-------DGVIVFSHLS-PDGDEGFPGDLKVTVTYTLNVANRLLI 165 (353)
T ss_pred CceEEecccCCCccccCCcccccc-eEEEEEEecC-------CCEEEEEEEC-CCCCCCCCccEEEEEEEEEccCCeeee
Confidence 1 12344 6776 8999998851 2336888877 677889999999999999988 89999
Q ss_pred EEEEEeCCCCceeeeeeccccccCCC-----c--ceEEEeccCCCccccc-cccccceecc-------------Cceeee
Q 021878 140 IPRVRNVDNKAFSFMFALRNYLSVSD-----I--SEVRVEGLETLDYFDY-LMNKERFTEQ-------------ADAITF 198 (306)
Q Consensus 140 ~~~v~N~~~~~~p~~~g~HpYF~~~~-----~--~~~~~~~~~~~~~~d~-l~~~~~~~~~-------------~~~~~~ 198 (306)
.++.+-. ++++|+++++|+|||+.. + ..+++.+..-.+.-|. ++.++..... ...-.|
T Consensus 166 ~~~A~~~-~~~TPiNLtnHsYfNL~g~~s~~I~~heI~i~a~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~lgd~~~~~ 244 (353)
T KOG1604|consen 166 MMEATAL-DKATPINLTNHSYFNLAGHNSGGIEGHEIQIEASKITEVDDTLIPTGEITPVKGTTFDFRKPTVLGDRIKQF 244 (353)
T ss_pred eehhhcc-CCCcceeeccceeEeccCCCCCCccceEEEEeecccEecCCccccccceEeccCccccccCCeecccccccc
Confidence 9887543 899999999999999973 2 2345543221111111 2222111100 111123
Q ss_pred c--CccCeEEeCC---C-----CeEEEEeCCCCcEEEEEecCCCcEEEeCCcccccccCCCCCC-----CCCcceEEece
Q 021878 199 D--GEIDRVYLST---P-----TKIAIIDHEKKRTFELRKDGMPDSVVWNPWDKKAKALPDMGV-----DGYKTMLCVDS 263 (306)
Q Consensus 199 ~--~~~D~~y~~~---~-----~~~~l~~~~~~~~l~v~~~~~~~~vvw~p~~~~~~~~~d~~~-----~~~~~~vCvEp 263 (306)
. .++|..|.-. + ..+.+.++.++|.|+|.+. .|.+++|+..- |.|..+ .....++|+|+
T Consensus 245 ~~i~g~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~Tn-qPgvqfYTgn~-----~~~~~gk~g~~y~k~g~~clet 318 (353)
T KOG1604|consen 245 ECIVGYDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVSTN-QPGVQFYTGNF-----LPDIKGKKGAVYPKHGGLCLET 318 (353)
T ss_pred ccccCCCcceEEccCCCCcccEEEEEEEcCccCcEEEEEeC-CCcEEEEeccc-----cccccCCCceEeeccceEEeec
Confidence 3 4677777421 1 2577889999999999986 89999999631 223222 23457999999
Q ss_pred eee--------cCCeEeCCCCEEEEEEEEEEEe
Q 021878 264 AAI--------ENPIVLKPFEEWRGRQELSTVS 288 (306)
Q Consensus 264 ~~~--------~g~~~L~pGe~~~~~~~i~~~~ 288 (306)
+.. ...++|+|||+|..++.++|..
T Consensus 319 q~~pda~n~~~fp~v~l~pGE~Y~h~~~y~Fsv 351 (353)
T KOG1604|consen 319 QYFPDAVNHPNFPSVILRPGETYTHETVYKFSV 351 (353)
T ss_pred ccCccccccCCCCceEecCCCeeeeEEEEEEec
Confidence 975 5899999999999999999854
No 18
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.85 E-value=2.4e-20 Score=168.88 Aligned_cols=239 Identities=15% Similarity=0.112 Sum_probs=149.1
Q ss_pred EEE-ecCCeEEEEEEeCCCeeeEEecCCCCC-----C--CCCcc---cCcccEE--ccccCCC-----CCCCCceEEecc
Q 021878 25 AEV-LLYGGQVVSWKNERREELLFMSSKSFW-----K--PPKAI---RGGIPVC--FPQFGNL-----GLLEQHGFARNR 86 (306)
Q Consensus 25 a~v-~~~Ga~l~s~~~~~g~e~L~~~~~~~~-----~--~~~~i---rgg~p~l--fP~~gr~-----~~~~~HGfar~~ 86 (306)
++| ...|.-|.++..+ |+++.|.+....- . .+..+ -||.-.- ++++|.- ..+++||+.++.
T Consensus 2 ~~vlp~rg~dI~~~~~~-g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG~~~~~ 80 (284)
T cd09023 2 FEVLPDRGMDIGRASYK-GIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHGRISNT 80 (284)
T ss_pred ceEcccCCcceeeeEEC-CEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcccccCC
Confidence 455 4889999999885 8999987643221 1 00011 1122222 3444431 357999999999
Q ss_pred CcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeeccccccCCCc
Q 021878 87 FWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSVSDI 166 (306)
Q Consensus 87 ~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~ 166 (306)
+|+++..... +++...|++..........+|||.++.+++|+|.+++|+++.+|+|.|+++||+.+++||||..+..
T Consensus 81 p~~~~~~~~~---~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~~~l~i~~~VtN~g~~~~P~~~~~H~n~~~p~l 157 (284)
T cd09023 81 PAELVGVEED---EEGDYEIEVSGEVREAALFGENLRLERTIETDLGSNEIRLEDRVTNEGFRPTPHMLLYHVNFGYPLL 157 (284)
T ss_pred CcceEEEEec---cCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCCceEEEEEEEEeCCCCCCcceEEeeEEcCCccc
Confidence 9999887420 0124446665544333346799999999999999999999999999999999999999999988632
Q ss_pred c-eEEEeccCCCccc--c-ccccccc-eeccCceeeecCccCeEEe-------CCCCeEEEEeCCCCcEEEEEec--CCC
Q 021878 167 S-EVRVEGLETLDYF--D-YLMNKER-FTEQADAITFDGEIDRVYL-------STPTKIAIIDHEKKRTFELRKD--GMP 232 (306)
Q Consensus 167 ~-~~~~~~~~~~~~~--d-~l~~~~~-~~~~~~~~~~~~~~D~~y~-------~~~~~~~l~~~~~~~~l~v~~~--~~~ 232 (306)
. +.+|.... .... | ....+.. +....... ....+.+|. +....+.|.++..+..+.|..+ .+|
T Consensus 158 ~~~~~l~~p~-~~~~p~~~~~~~~~~~~~~~~~p~--~~~~e~v~~~~~~~d~~g~~~~~l~~~~~g~~~~l~~~~~~~p 234 (284)
T cd09023 158 DEGARLEIPS-KEVTPRDAHAAEGLASWNTYLAPT--PGFAEQVYFHEPAADEDGRAPAALVNPRLGLGVEVRFDTDTLP 234 (284)
T ss_pred CCCCEEEecc-cccccCChhhcccccccccccCCC--CCCccEEEEEeccccCCCceeEEEEcCCCCcEEEEEEehhhCC
Confidence 2 33333111 1111 1 1000000 00000000 011122332 1124688888877766766654 599
Q ss_pred cEEEeCCcccccccCCCCCCCCCcceEEeceeee-----------cCCeEeCCCCEEEEEE
Q 021878 233 DSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI-----------ENPIVLKPFEEWRGRQ 282 (306)
Q Consensus 233 ~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~-----------~g~~~L~pGe~~~~~~ 282 (306)
++++|+.... ....+||||+++ .+++.|+|||+++.++
T Consensus 235 ~~~~W~~~~~------------~~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 235 YLTQWKNTGA------------GAYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred HHHHHhccCC------------CccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 9999996421 245778999986 4799999999988764
No 19
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.40 E-value=9.3e-12 Score=113.33 Aligned_cols=254 Identities=15% Similarity=0.149 Sum_probs=133.9
Q ss_pred CCccEEEEECCCccEEEEe-cCCeEEEEEEeCCCeeeEEecCCC-----CCC---CCCcccC---cccEEc-cccCCC--
Q 021878 10 DGLPRIILTEPTGSSAEVL-LYGGQVVSWKNERREELLFMSSKS-----FWK---PPKAIRG---GIPVCF-PQFGNL-- 74 (306)
Q Consensus 10 ~~~~~~~L~~~~~~~a~v~-~~Ga~l~s~~~~~g~e~L~~~~~~-----~~~---~~~~irg---g~p~lf-P~~gr~-- 74 (306)
.|+..++|+|+.|++++|. ..|.-|.+...+ |.++-|.+... +++ .....|+ -..-|- ..+|.-
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~~-G~~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G~P~~ 80 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEFD-GVNLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNGAPSE 80 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEET-TEEE----S-----GGG--HHHHTGGGGT---SEEEEEES--SS-EE
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEEC-CEEecccCCCcCCCCccccccCCcchhhcccchheeeccccCCCCCC
Confidence 6889999999778999996 899999999986 89998876542 111 0001111 001111 122211
Q ss_pred ---CCCCCceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEe--CCeEEEEEEEEeCCCC
Q 021878 75 ---GLLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISIS--PGKLTLIPRVRNVDNK 149 (306)
Q Consensus 75 ---~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~--~~~L~i~~~v~N~~~~ 149 (306)
..+|+||-..+.+|+....+. .+++...+.++-.-.. ...|-.+++++-++++. .+.++|+.+|+|.+..
T Consensus 81 ~~g~~~~LHG~i~~~Pa~~v~~~~---~~~~~~~i~v~G~v~~--~~~fg~~l~l~r~i~~~~g~~~i~i~d~VtN~~~~ 155 (302)
T PF14486_consen 81 DDGETYPLHGRISNTPAEHVWLEI---WDGDGYEIEVSGEVRE--AAGFGENLRLERTIRLRAGSNTIRIEDRVTNLGFQ 155 (302)
T ss_dssp ETTEEE-TTBSGGGS--SEEEEEE---ESSTT--EEEEEEEEE--EETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-SSS
T ss_pred cCCccccccccccCCCcceEEEEE---ecCCCcEEEEEEEEEE--EEeccCcEEEEEEEEEECCCcEEEEEEEEEECCCC
Confidence 137899999999998665531 0112334444322111 23566677777777774 4899999999999999
Q ss_pred ceeeeeeccccccCC---CcceEEEeccCCCcccccccc----ccceeccCceeeecCccCeEEe-----CCCC--eEEE
Q 021878 150 AFSFMFALRNYLSVS---DISEVRVEGLETLDYFDYLMN----KERFTEQADAITFDGEIDRVYL-----STPT--KIAI 215 (306)
Q Consensus 150 ~~p~~~g~HpYF~~~---~~~~~~~~~~~~~~~~d~l~~----~~~~~~~~~~~~~~~~~D~~y~-----~~~~--~~~l 215 (306)
++|+.+.+|.=|..+ +..++......-..+.+.... ...+... . ...-+.||. +..+ .+.|
T Consensus 156 p~p~m~lyH~N~G~pll~eg~ri~~p~~~~~~~~~~a~~~~~~~~~~~~P-~----~~~~E~Vy~~~~~~d~~G~~~~~l 230 (302)
T PF14486_consen 156 PMPLMYLYHMNFGYPLLDEGARIVAPTKEVTPRDDRAAEGIADWDRMPAP-Q----PGFPEQVYFHDLLADEDGWAHAAL 230 (302)
T ss_dssp -EEEEEEEEEEE-TTT-STT-EEE--EEEEEESSGGGGGGSTTTTB---S------TT---EEEEEEE---TTSEEEEEE
T ss_pred CchhHHhhhhccCccccCCCcEEEcCcccccCCchhhhcCCccceecCCC-C----CCCCcEEEEecccccCCCcEEEEE
Confidence 999999999999888 333443321100011111110 0011000 0 011233442 1123 4778
Q ss_pred EeCCCCcEEEEEe--cCCCcEEEeCCcccccccCCCCCCCCCcceEEeceeee-----------cCCeEeCCCCEEEEEE
Q 021878 216 IDHEKKRTFELRK--DGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCVDSAAI-----------ENPIVLKPFEEWRGRQ 282 (306)
Q Consensus 216 ~~~~~~~~l~v~~--~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~-----------~g~~~L~pGe~~~~~~ 282 (306)
..++.+..+.|.. +.+|++.+|-.... ....++|||.++ ..+..|+|||+.+.++
T Consensus 231 ~n~~~g~g~~v~f~~~~lP~~~~Wk~~~~------------~~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pge~~~~~l 298 (302)
T PF14486_consen 231 VNPDGGLGFEVRFDTSQLPYLTQWKNYGG------------GEYVLGLEPATCRPEGRAAAREAGTLPMLAPGESREFSL 298 (302)
T ss_dssp E-SSSS-EEEEEEETTTS-EEEEEEEES-------------T-EEEEEEEESS-SS-HHHHHHTT--EEE-TT-EEEEEE
T ss_pred ECCCCCcEEEEEEchHHCChhHhheeCCC------------CEeEEEEecccCCCCCHHHHHhCCCcceECCCCeEEEEE
Confidence 8888777777764 56999999975321 245789999986 3688999999999988
Q ss_pred EEEE
Q 021878 283 ELST 286 (306)
Q Consensus 283 ~i~~ 286 (306)
+++|
T Consensus 299 ~~~v 302 (302)
T PF14486_consen 299 EFGV 302 (302)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8765
No 20
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.37 E-value=1.3e-11 Score=111.83 Aligned_cols=188 Identities=10% Similarity=0.092 Sum_probs=110.1
Q ss_pred CCCCceE----EeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeC--CeEEEEEEEEeCCCC
Q 021878 76 LLEQHGF----ARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP--GKLTLIPRVRNVDNK 149 (306)
Q Consensus 76 ~~~~HGf----ar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~--~~L~i~~~v~N~~~~ 149 (306)
.+++||- .++..|.++..+ ++...+++.-.. ....+||++|+++.+|+|.. +.|+|+++|+|.++.
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~~d------~~~~~l~l~g~~--~~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~ 132 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVGED------ASGDYLALTGEY--EYVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLSAQ 132 (293)
T ss_pred ccCCcCCcCCCCccceEEEEEec------CCCCEEEEEEEE--EeeeccCccEEEEEEEEEeCCCCEEEEEEEEEECCCC
Confidence 4789999 455555555331 123445554432 22358999999999999997 999999999999999
Q ss_pred ceeeeeeccccccCCCcceEEEeccCC-Cccccccc-------cccce----eccCceee---ecCc--cCeEEeCC---
Q 021878 150 AFSFMFALRNYLSVSDISEVRVEGLET-LDYFDYLM-------NKERF----TEQADAIT---FDGE--IDRVYLST--- 209 (306)
Q Consensus 150 ~~p~~~g~HpYF~~~~~~~~~~~~~~~-~~~~d~l~-------~~~~~----~~~~~~~~---~~~~--~D~~y~~~--- 209 (306)
|||+.+++|+||......++...-+.. ......++ ....+ ..+...+. -... -..||...
T Consensus 133 p~p~~~~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~~~~~~~~~~~~~~~~P~~~~~E~V~~~~~~~ 212 (293)
T cd09269 133 PMPLMYMCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYNEALVADPARGDVLDKPDLYDPEIVFFADDLG 212 (293)
T ss_pred CChhhEecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccchHHHhhCchhhhhccCCCCCCccEEEEeeccc
Confidence 999999999999985443333211000 00000000 00000 00000000 0011 12333211
Q ss_pred ----CCeEEEEeCCCCcEEEEE--ecCCCcEEEeCCcccccccCCCCCCCCCcceEEe-ceeee-----------cCCeE
Q 021878 210 ----PTKIAIIDHEKKRTFELR--KDGMPDSVVWNPWDKKAKALPDMGVDGYKTMLCV-DSAAI-----------ENPIV 271 (306)
Q Consensus 210 ----~~~~~l~~~~~~~~l~v~--~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCv-Ep~~~-----------~g~~~ 271 (306)
...+.|.+++++ .+.+. ++.+|++..|--... ...-..+ ||.++ ..++.
T Consensus 213 ~~~~~~~~~l~n~~g~-~~~~~f~~~~lP~~~~W~~~~~------------~~~v~~~~~PaT~~p~g~~~ar~~G~l~~ 279 (293)
T cd09269 213 KYTGWAHFMMVHPDGD-AFYTRFSTAEFPYATRWILYNG------------DQQVAAFALPATCRPEGYLAAKEAGTLRT 279 (293)
T ss_pred ccCCcEEEEEECCCCC-EEEEEEchhhCChhheehhcCC------------CcceEEEEccCCCCcCChHHHHHCCCcce
Confidence 136777877655 55555 557999999963210 1223445 59986 36889
Q ss_pred eCCCCEEEEEEEE
Q 021878 272 LKPFEEWRGRQEL 284 (306)
Q Consensus 272 L~pGe~~~~~~~i 284 (306)
|+|||+.+.++++
T Consensus 280 L~pGe~~~f~l~~ 292 (293)
T cd09269 280 LAPGETRRFSVTT 292 (293)
T ss_pred eCCCCeEEEEEec
Confidence 9999999877653
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=98.15 E-value=0.0024 Score=57.59 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=77.2
Q ss_pred cEEEEECCCccEEEEe-cCCeEEEEEEeCCCeeeEEecCC---CCCC---CCCcccCcccEEc--cc-cCCC--CCCCCc
Q 021878 13 PRIILTEPTGSSAEVL-LYGGQVVSWKNERREELLFMSSK---SFWK---PPKAIRGGIPVCF--PQ-FGNL--GLLEQH 80 (306)
Q Consensus 13 ~~~~L~~~~~~~a~v~-~~Ga~l~s~~~~~g~e~L~~~~~---~~~~---~~~~irgg~p~lf--P~-~gr~--~~~~~H 80 (306)
.+++|+|+. ++++|. +.|++|+++...+|.++|+.... .... ....+.||. -++ |. .-|. ...+--
T Consensus 5 ~~~~l~N~~-i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~Pd 82 (274)
T PF14315_consen 5 NCLRLSNGD-IELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWPPD 82 (274)
T ss_pred eEEEEECCC-EEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCCCc
Confidence 678999997 999996 99999999988657777743321 1111 112223332 344 22 0010 001111
Q ss_pred eEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCe--EEEEEEEEeCCCCceeeee
Q 021878 81 GFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGK--LTLIPRVRNVDNKAFSFMF 155 (306)
Q Consensus 81 Gfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~--L~i~~~v~N~~~~~~p~~~ 155 (306)
-+.-+.+|++... +..|+|+-..++. ..++++.+|+|.+++ ++|+.+++|.++.+.++++
T Consensus 83 ~~ld~~p~~~~~~---------~~~v~L~s~~~~~------tgiq~~~~i~l~~~~~~i~v~~~i~N~~~~~~~~a~ 144 (274)
T PF14315_consen 83 PVLDNGPYEVEID---------DDGVRLTSPPSPK------TGIQKERTITLDADRPSIEVTHRITNIGDWPVEWAP 144 (274)
T ss_pred ccccCCceeEEEc---------CCEEEEecCCCCc------cCcEEEEEEEECCCCCEEEEEEEEEeCCCCcceeee
Confidence 1223466666652 5567666543322 246899999998855 9999999999999776543
No 22
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=95.27 E-value=1.9 Score=38.88 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCCCccEEEEECCCccEEEEe-cCCeEEEEEEeC-CCeee---EEecCCCCCCCC-----CcccCcccE-----------
Q 021878 8 DKDGLPRIILTEPTGSSAEVL-LYGGQVVSWKNE-RREEL---LFMSSKSFWKPP-----KAIRGGIPV----------- 66 (306)
Q Consensus 8 ~~~~~~~~~L~~~~~~~a~v~-~~Ga~l~s~~~~-~g~e~---L~~~~~~~~~~~-----~~irgg~p~----------- 66 (306)
+..|.+.+.++++. +.+.|. .+||.|.+|... ...++ |-...++|-... ..--.|+..
T Consensus 3 d~Dg~~E~~~~~~~-~~~~~~~~~gg~~~E~d~~~~~~N~~~tl~r~~E~Yh~~~~~~~~~~~~~gi~siH~~~~~~~~~ 81 (278)
T PF09095_consen 3 DFDGREEVLLQNES-LNAYFKPAYGGSLFELDVKRSAHNLLDTLTRRPEAYHEKIAAQQEESEGEGIASIHDRVKFKDEE 81 (278)
T ss_dssp SSSSS-EEEEE-SS-EEEEEETTTTTEEEEEEETTTTEETT--------GGG--------------------------HH
T ss_pred CCCCcceEEEECCc-EEEEEeeCCCcEEEEEcccCccccccccccCCCccccchhccccccCCCCCccchhhcccccCcc
Confidence 46889999999997 999997 559999999863 23443 433334443321 000001110
Q ss_pred ----Ecc-ccCCC----------------CCC--CCceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCc
Q 021878 67 ----CFP-QFGNL----------------GLL--EQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRG 123 (306)
Q Consensus 67 ----lfP-~~gr~----------------~~~--~~HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~ 123 (306)
|.+ |--|. ... .-=|---+++|++.... ..|+|.-... ..+.+
T Consensus 82 ~~~~l~yD~~~R~sf~Dhf~~~~~tle~~~~~~~~e~gDF~~~~y~~~~~~---------~~v~f~r~G~-----~~~~~ 147 (278)
T PF09095_consen 82 LKEDLVYDWYPRRSFIDHFLPPDTTLEDFIQGSFRELGDFANQPYELEVNR---------DEVTFERDGG-----VEGHP 147 (278)
T ss_dssp HHTT----SS---EEEEEEE-TT--HHHHHTTTS---BS-SSS--EEEEES---------SEEEEEEEEE-----ESEEE
T ss_pred ccccccCCCccCceeEEEecCCCCCHHHHhcCchhhhhhccCCceEEEecC---------CceEEEEecc-----cccCc
Confidence 000 11110 001 11133335889887763 2266654321 25778
Q ss_pred eEEEEEEEEeCCeEEEEEEEEeCCCCceeeee
Q 021878 124 FELRLRISISPGKLTLIPRVRNVDNKAFSFMF 155 (306)
Q Consensus 124 f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~ 155 (306)
..++-+|+|.+++|.++|+++ .++.+..+-+
T Consensus 148 ~~l~K~y~l~~~~l~V~Y~l~-~~~~~~~~~f 178 (278)
T PF09095_consen 148 ITLEKRYRLTKNGLQVDYRLT-ESPEPISLLF 178 (278)
T ss_dssp EEEEEEEEEETTEEEEEEEEE--ESS---EEE
T ss_pred eEEEEEEEEcCCEEEEEEEEE-ECCCCcceEE
Confidence 899999999999999999999 5555544433
No 23
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=93.91 E-value=0.97 Score=42.41 Aligned_cols=117 Identities=16% Similarity=0.227 Sum_probs=66.8
Q ss_pred cEEEEECCCccEEEEecCCeEEEEEEeCCC--------eeeEEecCCCCCCCCCcccCcccEEccc-cCCCCC-CCCce-
Q 021878 13 PRIILTEPTGSSAEVLLYGGQVVSWKNERR--------EELLFMSSKSFWKPPKAIRGGIPVCFPQ-FGNLGL-LEQHG- 81 (306)
Q Consensus 13 ~~~~L~~~~~~~a~v~~~Ga~l~s~~~~~g--------~e~L~~~~~~~~~~~~~irgg~p~lfP~-~gr~~~-~~~HG- 81 (306)
..++|+++. ++++|+..||.|.++..++- ..+....+.. ...|+. .|.+.. .+.-.
T Consensus 74 ~~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~~------------~~~y~~~~gl~~~~~~~~~~ 140 (366)
T TIGR03593 74 KRITVKTDV-LRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDGA------------ERLYVAQSGLIGANGADLAL 140 (366)
T ss_pred CeEEEECCe-EEEEEeCCCceeeeeccccCccccCCCCCcEEeecCCC------------CceeEEEeccccCCCCcccC
Confidence 468999997 99999999999999986311 1121111111 111221 121111 11000
Q ss_pred EEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCC--eEEEEEEEEeCCCCcee
Q 021878 82 FARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPG--KLTLIPRVRNVDNKAFS 152 (306)
Q Consensus 82 far~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~--~L~i~~~v~N~~~~~~p 152 (306)
...+..|++....-.+ .++...|+|++... -...++.+|++.++ .+.++++|+|.++.+..
T Consensus 141 ~~~~~~~~~~~~~~~l--~~~~~~v~l~~~~~--------~G~~v~k~ytf~~~sY~i~v~~~v~N~~~~~~~ 203 (366)
T TIGR03593 141 PGHRTVWQAEGGEYTL--TPGQLPVTLTWDNS--------NGVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVS 203 (366)
T ss_pred CCCCceEEeCCCceee--CCCCEEEEEEEECC--------CCeEEEEEEEEeCCeEEEEeEEEEEeCCCCCee
Confidence 1234677776431000 11224577766532 13689999999876 68888999999987654
No 24
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=93.62 E-value=0.81 Score=40.80 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=56.9
Q ss_pred EEEECCCccEEEEecCCeEEEEEEeC--------CCeee--EEecCCCCCCCCCcccCcccEEccccCCCCCCCCceEEe
Q 021878 15 IILTEPTGSSAEVLLYGGQVVSWKNE--------RREEL--LFMSSKSFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFAR 84 (306)
Q Consensus 15 ~~L~~~~~~~a~v~~~Ga~l~s~~~~--------~g~e~--L~~~~~~~~~~~~~irgg~p~lfP~~gr~~~~~~HGfar 84 (306)
++|+|+. ++++++..||.|.++..+ ++.++ +-..+.. .-+.-|.+.-....-...- .
T Consensus 2 v~ven~~-~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~~----------~~~~~~~l~~~~~~~~~~~--~ 68 (270)
T PF14849_consen 2 VTVENDL-FKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSDEE----------NYPLAFGLVFNTGGAQLPT--N 68 (270)
T ss_dssp EEEE-SS--EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEETTE----------EEEEEEEEESTT--TTSGG--S
T ss_pred EEEECCC-EEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCCCc----------ceEEEEcccccCccccCCC--c
Confidence 6899997 999999999999999852 01122 1111110 0112222221110000111 4
Q ss_pred ccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeC--CeEEEEEEEEeCCCCceeee
Q 021878 85 NRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISP--GKLTLIPRVRNVDNKAFSFM 154 (306)
Q Consensus 85 ~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~--~~L~i~~~v~N~~~~~~p~~ 154 (306)
+..|++......+.+..+..+|+|+....+ .+.++.+|+|.+ -.+.++++++|.++.+....
T Consensus 69 ~~~f~~~~~~~~l~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~~~~~~~~~ 132 (270)
T PF14849_consen 69 DLYFSVSQKSYTLKEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNLSDQPVSLS 132 (270)
T ss_dssp --B-B-S-SEEE--TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE--SSS-EEEE
T ss_pred cceEEEcCCceeeccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECCCCCccccc
Confidence 567777653100000124567777776421 268999999996 45777788889887766653
No 25
>PRK01318 membrane protein insertase; Provisional
Probab=93.17 E-value=1.4 Score=43.48 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=63.8
Q ss_pred EEEEECCCccEEEEecCCeEEEEEEeCC-----C--eeeEEecCCCCCCCCCcccCcccEEccccCCCCCCCCceEEe-c
Q 021878 14 RIILTEPTGSSAEVLLYGGQVVSWKNER-----R--EELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFAR-N 85 (306)
Q Consensus 14 ~~~L~~~~~~~a~v~~~Ga~l~s~~~~~-----g--~e~L~~~~~~~~~~~~~irgg~p~lfP~~gr~~~~~~HGfar-~ 85 (306)
.++++|+. ++++|++.||.|.++..++ + .++.-.++... . .-+.-+=+.|. ..+.+--.. +
T Consensus 40 ~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~~--~------~y~~~~g~~~~--~~~~~~~~~~~ 108 (521)
T PRK01318 40 RITVETDV-LRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPSTE--H------PYFAQSGLTGA--DGPDNVPNPDR 108 (521)
T ss_pred EEEEEcCc-EEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCCC--c------ceeeeeccccC--CCcccccCCCC
Confidence 78999997 9999999999999998631 1 11211111100 0 00000111110 001110000 3
Q ss_pred cCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCe--EEEEEEEEeCCCCceee
Q 021878 86 RFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGK--LTLIPRVRNVDNKAFSF 153 (306)
Q Consensus 86 ~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~--L~i~~~v~N~~~~~~p~ 153 (306)
..|+.........+.++...|+|++... -..+++.+|++.+++ ++++++++|.++.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~g~~~~k~yt~~~~~Y~~~~~~~v~n~~~~~~~~ 170 (521)
T PRK01318 109 TLYTADGDSLVLADGQNELPVTLTWTNG--------NGLTFTKTYTLDRGDYMFTVEYSVNNNSGAPVNL 170 (521)
T ss_pred cceeecccceeeccCCCceEEEEEEECC--------CCeEEEEEEEEcCCceEEEEEEEEEcCCCCceee
Confidence 5666552111001112345577776431 236889999997754 88889999987765444
No 26
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=82.06 E-value=1.8 Score=32.43 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=21.9
Q ss_pred EEEeCCeEEEEEEEEeCCCCceeeeeeccccccC
Q 021878 130 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLSV 163 (306)
Q Consensus 130 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~ 163 (306)
++|..+.=+++++|+|+||+ |+..|-|-.|.=
T Consensus 12 I~lN~gr~~~~l~V~N~GDR--PIQVGSH~HF~E 43 (100)
T PF00699_consen 12 IELNAGRERITLEVTNTGDR--PIQVGSHYHFFE 43 (100)
T ss_dssp EETTTTSEEEEEEEEE-SSS---EEEETTS-GGG
T ss_pred EEecCCCcEEEEEEEeCCCc--ceEEccccCHHH
Confidence 45556677899999999999 556677777743
No 27
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=81.91 E-value=2 Score=32.30 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=23.4
Q ss_pred EEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 130 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 130 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
++|..+.=+++++|+|++|+ |+..|-|-.|.
T Consensus 13 I~lN~gr~~~~l~V~NtGDR--pIQVGSH~HF~ 43 (101)
T cd00407 13 IELNAGREAVTLKVKNTGDR--PIQVGSHYHFF 43 (101)
T ss_pred eEeCCCCCEEEEEEEeCCCc--ceEEccccchh
Confidence 45666667899999999999 55557777664
No 28
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=81.71 E-value=2.2 Score=32.10 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=23.5
Q ss_pred EEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 130 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 130 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
+.|..+.=+++++|+|++|+ |+..|-|-.|.
T Consensus 13 I~ln~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 43 (101)
T TIGR00192 13 ITINEGRKTVSVKVKNTGDR--PIQVGSHFHFF 43 (101)
T ss_pred EEeCCCCcEEEEEEEeCCCc--ceEEccccchh
Confidence 45666667899999999999 55557777664
No 29
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=78.13 E-value=3 Score=31.26 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=23.7
Q ss_pred EEEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 129 RISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 129 ~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
.++|.....+++++|.|+||+|. ..|-|-.|.
T Consensus 12 ~IelN~gr~~~~i~V~NtGDRPI--QVGSHfHF~ 43 (106)
T COG0832 12 DIELNAGRPTVTIEVANTGDRPI--QVGSHFHFF 43 (106)
T ss_pred cEEEeCCCcceEEEEeecCCCce--Eeecceeeh
Confidence 45666677888999999999955 456666663
No 30
>PRK13202 ureB urease subunit beta; Reviewed
Probab=77.53 E-value=3.5 Score=31.10 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=22.4
Q ss_pred EEEeCCe-EEEEEEEEeCCCCceeeeeecccccc
Q 021878 130 ISISPGK-LTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 130 y~L~~~~-L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
+.|..+. =+++++|+|+||+ |+..|-|-.|.
T Consensus 13 I~ln~grr~~~~l~V~NtGDR--PIQVGSHyHF~ 44 (104)
T PRK13202 13 IEMNAAALSRLQMRIINAGDR--PVQVGSHVHLP 44 (104)
T ss_pred EEeCCCCCceEEEEEEeCCCC--ceEEccccchh
Confidence 4555553 5789999999999 45557777664
No 31
>PRK13205 ureB urease subunit beta; Reviewed
Probab=75.46 E-value=3.8 Score=33.05 Aligned_cols=31 Identities=6% Similarity=0.087 Sum_probs=23.4
Q ss_pred EEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 130 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 130 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
+.|..+.=+++++|+|++|+ |+..|-|-.|.
T Consensus 13 IelN~GR~~i~L~V~NtGDR--PIQVGSHyHF~ 43 (162)
T PRK13205 13 LTGNVGREAKTIEIINTGDR--PVQIGSHFHFA 43 (162)
T ss_pred eEeCCCCcEEEEEEEeCCCC--ceEeccccchh
Confidence 45666667899999999999 55557777664
No 32
>PRK13203 ureB urease subunit beta; Reviewed
Probab=74.64 E-value=4.4 Score=30.54 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=23.1
Q ss_pred EEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 130 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 130 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
+.|..+.=+++++|+|++|+| +..|-|-.|.
T Consensus 13 I~ln~gr~~~~l~V~NtGDRP--IQVGSH~HF~ 43 (102)
T PRK13203 13 IELNAGRETVTLTVANTGDRP--IQVGSHYHFF 43 (102)
T ss_pred EEeCCCCCEEEEEEEeCCCCc--eEEccccchh
Confidence 456666678999999999995 5557776663
No 33
>PRK13204 ureB urease subunit beta; Reviewed
Probab=74.47 E-value=4.2 Score=32.89 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=28.1
Q ss_pred cCCCceEEE-EEEEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 119 AWPRGFELR-LRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 119 ~~P~~f~l~-~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
.-|..+.+. -.+.|..+.=+++++|+|+||+| +..|-|-.|.
T Consensus 24 ~~pGei~~~~~~I~lN~gr~~~~l~V~NtGDRP--IQVGSHyHF~ 66 (159)
T PRK13204 24 RPVGGYVLAKDPIEINQGRPRTTLTVRNTGDRP--IQIGSHFHFF 66 (159)
T ss_pred CCCCeEEeCCCCeEeCCCCcEEEEEEEeCCCCc--eEeccccchh
Confidence 345543322 23667777778999999999994 5557776663
No 34
>PRK13201 ureB urease subunit beta; Reviewed
Probab=67.94 E-value=7.1 Score=30.85 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=23.1
Q ss_pred EEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 130 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 130 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
+.|..+.=+++++|+|+||+| +..|-|-.|.
T Consensus 13 I~lN~gr~~~~l~V~NtGDRP--IQVGSHyHF~ 43 (136)
T PRK13201 13 VEINNHHPETVIEVENTGDRP--IQVGSHFHFY 43 (136)
T ss_pred eEeCCCCCEEEEEEEeCCCcc--eEeccccchh
Confidence 456666678999999999995 5557776664
No 35
>PRK13198 ureB urease subunit beta; Reviewed
Probab=66.26 E-value=7.8 Score=31.36 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=28.3
Q ss_pred cCCCceEE-EEEEEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 119 AWPRGFEL-RLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 119 ~~P~~f~l-~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
.-|+.+.+ .-.+.|..+.=+++++|+|+||+| +..|-|-.|.
T Consensus 29 ~~pGei~~~~g~I~lN~gr~~~~l~V~NtGDRP--IQVGSHyHF~ 71 (158)
T PRK13198 29 TPLGGLVLAETPITFNENKPVTKVKVRNTGDRP--IQVGSHFHFF 71 (158)
T ss_pred CCCceEEeCCCCeEeCCCCcEEEEEEEeCCCCc--eEeccccchh
Confidence 34554432 224667777788999999999995 5557776663
No 36
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=64.32 E-value=8.2 Score=32.83 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=28.8
Q ss_pred cCCCceEEE-EEEEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 119 AWPRGFELR-LRISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 119 ~~P~~f~l~-~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
.+|+.+.+. =.+.|..+.=+++++|+|+||+ |+..|-|-.|.
T Consensus 110 l~PGei~~~~~~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 152 (208)
T PRK13192 110 LYPGEILPGDGEIELNAGRPAVTLDVTNTGDR--PIQVGSHFHFF 152 (208)
T ss_pred cCCCEEEcCCCCeeeCCCCCEEEEEEEeCCCC--ceeeccccchh
Confidence 356654332 2366766777899999999999 55557777664
No 37
>PRK13986 urease subunit alpha; Provisional
Probab=61.47 E-value=9.3 Score=32.92 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=24.3
Q ss_pred EEEEeCCeEEEEEEEEeCCCCceeeeeecccccc
Q 021878 129 RISISPGKLTLIPRVRNVDNKAFSFMFALRNYLS 162 (306)
Q Consensus 129 ~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 162 (306)
.+.|..+.=+++++|+|+||+ |+..|-|-.|.
T Consensus 117 ~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~ 148 (225)
T PRK13986 117 DITINAGKKAVSVKVKNVGDR--PVQVGSHFHFF 148 (225)
T ss_pred CeecCCCCcEEEEEEEeCCCC--ceeeccccchh
Confidence 356666777899999999999 45557777663
No 38
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=60.85 E-value=28 Score=25.35 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCceEEEEEEEEeCCeEEEEEEEEeCCCCceeeeeeccccc
Q 021878 120 WPRGFELRLRISISPGKLTLIPRVRNVDNKAFSFMFALRNYL 161 (306)
Q Consensus 120 ~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF 161 (306)
-|+.+++...|.-... .+.+++.|.|.++..|.+--+.|-
T Consensus 5 l~~~~~v~~~~~~~~g--~l~l~l~N~g~~~~~~~v~~~~y~ 44 (89)
T PF05506_consen 5 LPYAPEVTARYDPATG--NLRLTLSNPGSAAVTFTVYDNAYG 44 (89)
T ss_pred CCCCCEEEEEEECCCC--EEEEEEEeCCCCcEEEEEEeCCcC
Confidence 3666667776654444 666667899999999998887773
No 39
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=60.37 E-value=1.1e+02 Score=27.49 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=23.1
Q ss_pred EEECCCccEEEEecCCeEEEEEEeCCCeeeEE
Q 021878 16 ILTEPTGSSAEVLLYGGQVVSWKNERREELLF 47 (306)
Q Consensus 16 ~L~~~~~~~a~v~~~Ga~l~s~~~~~g~e~L~ 47 (306)
+|+.++ .++++.-.-|.|.||+.. |+++|.
T Consensus 1 tV~g~~-f~~~Fdk~~G~l~s~~~~-g~~ll~ 30 (276)
T PF02929_consen 1 TVSGKD-FSYVFDKKTGTLTSYKYN-GKELLK 30 (276)
T ss_dssp -EEETT-EEEEEETTTTCEEEEEET-TEEEEC
T ss_pred CCccCC-EEEEEECCCCeEEEEEEC-CEEeec
Confidence 466665 899998667799999984 888874
No 40
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=49.08 E-value=24 Score=25.51 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=13.9
Q ss_pred eEEEEEEEEeCCCCceeeee
Q 021878 136 KLTLIPRVRNVDNKAFSFMF 155 (306)
Q Consensus 136 ~L~i~~~v~N~~~~~~p~~~ 155 (306)
++.+.++|+|.++++..+.+
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f 20 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQF 20 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEE
T ss_pred CEEEEEEEEeCCCCeEEEEe
Confidence 47889999999999777653
No 41
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=46.59 E-value=26 Score=32.75 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=23.3
Q ss_pred EEEEEEEeCCeEEEEEEEEeCCCCceeee
Q 021878 126 LRLRISISPGKLTLIPRVRNVDNKAFSFM 154 (306)
Q Consensus 126 l~~~y~L~~~~L~i~~~v~N~~~~~~p~~ 154 (306)
...+|++-+..|+++++|+|+|+++..++
T Consensus 254 ~~A~Y~vpgR~l~~~l~VtN~g~~pv~Lg 282 (381)
T PF04744_consen 254 TDATYRVPGRTLTMTLTVTNNGDSPVRLG 282 (381)
T ss_dssp EEEEEESSSSEEEEEEEEEEESSS-BEEE
T ss_pred eccEEecCCcEEEEEEEEEcCCCCceEee
Confidence 34578888899999999999999976543
No 42
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=46.10 E-value=1.3e+02 Score=25.54 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=35.3
Q ss_pred ccEEEEEecCChhhhccCCCceEEEEE-EEEeC-CeEEEEEEEEeCCCCceeeeee
Q 021878 103 QSTVDLILKSTEEDIKAWPRGFELRLR-ISISP-GKLTLIPRVRNVDNKAFSFMFA 156 (306)
Q Consensus 103 ~~~v~l~l~~~~~~~~~~P~~f~l~~~-y~L~~-~~L~i~~~v~N~~~~~~p~~~g 156 (306)
+-.|++++..+- ..+-||.|+-+.+ .++.. ..-.+.|.++|.+++++.-...
T Consensus 62 ~R~I~V~F~a~~--~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A~ 115 (188)
T PRK05089 62 SRTITVEFDANV--NGGLPWEFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQAI 115 (188)
T ss_pred CcEEEEEEeccC--CCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEe
Confidence 456777776543 3567888875443 34444 5567789999999998875544
No 43
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=45.46 E-value=28 Score=32.51 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=22.6
Q ss_pred EEEEEeCCeEEEEEEEEeCCCCceeee
Q 021878 128 LRISISPGKLTLIPRVRNVDNKAFSFM 154 (306)
Q Consensus 128 ~~y~L~~~~L~i~~~v~N~~~~~~p~~ 154 (306)
-+|.+-+..|+++++|+|.++++.-++
T Consensus 275 a~Y~VPGR~l~~~~~VTN~g~~~vrlg 301 (399)
T TIGR03079 275 ANYDVPGRALRVTMEITNNGDQVISIG 301 (399)
T ss_pred cEEecCCcEEEEEEEEEcCCCCceEEE
Confidence 468888889999999999999976543
No 44
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=42.53 E-value=41 Score=24.10 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCcceEEeceeeecCCeEeCCCCEEEEEEEEE---EEecCCC
Q 021878 254 GYKTMLCVDSAAIENPIVLKPFEEWRGRQELS---TVSSSYC 292 (306)
Q Consensus 254 ~~~~~vCvEp~~~~g~~~L~pGe~~~~~~~i~---~~~~~~~ 292 (306)
.+-.+|++..........|.|++.-.+++.+. +..-.+|
T Consensus 30 H~I~wI~l~~~~~~~~~~l~P~~~p~a~F~~~~~~~~a~~yC 71 (78)
T cd03171 30 HYIEWIELLADGKVYRKHLKPGDAPEAEFSVDADVVTARAYC 71 (78)
T ss_pred eEEEEEEEEeCCcEEEEEeCCCCccEEEEEEeCCCEEEEEEe
Confidence 34567888866555678999998877777765 4566788
No 45
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=34.76 E-value=1e+02 Score=24.78 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=29.2
Q ss_pred cceEEeceeee--------cCCeEeCCCCEEEEEEEEEEEecCC
Q 021878 256 KTMLCVDSAAI--------ENPIVLKPFEEWRGRQELSTVSSSY 291 (306)
Q Consensus 256 ~~~vCvEp~~~--------~g~~~L~pGe~~~~~~~i~~~~~~~ 291 (306)
-.-+|||-.+. +....|+|++..+.+..|++.+..+
T Consensus 85 LqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStet 128 (140)
T PF07718_consen 85 LQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTET 128 (140)
T ss_pred hhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccC
Confidence 45688888875 4688999999999999999977643
No 46
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=29.63 E-value=3.6e+02 Score=23.70 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=34.9
Q ss_pred ccEEEEEecCChhhhccCCCceEEEEE-EEEeC-CeEEEEEEEEeCCCCceeeeeec
Q 021878 103 QSTVDLILKSTEEDIKAWPRGFELRLR-ISISP-GKLTLIPRVRNVDNKAFSFMFAL 157 (306)
Q Consensus 103 ~~~v~l~l~~~~~~~~~~P~~f~l~~~-y~L~~-~~L~i~~~v~N~~~~~~p~~~g~ 157 (306)
+-.|++++..+- ..+-||.|+-+++ .++.. ..-.+.|+++|.+++++.-....
T Consensus 106 ~R~I~V~F~a~v--~~~lpW~F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~y 160 (232)
T PTZ00128 106 KRLIKIRFLADT--GSTMPWEFEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVATY 160 (232)
T ss_pred ceEEEEEEeccC--CCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEec
Confidence 456777776432 3467888875443 33333 55677899999999998765543
No 47
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=25.93 E-value=1.6e+02 Score=21.33 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCceEEEEEEEEeC-CeEEEEEEEEeCCCCceeeee
Q 021878 121 PRGFELRLRISISP-GKLTLIPRVRNVDNKAFSFMF 155 (306)
Q Consensus 121 P~~f~l~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~ 155 (306)
|+-.++.+=+.|.. +.+.+.++|.|..++++.+..
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEE
Confidence 55566666666665 889999999999888877654
No 48
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=25.77 E-value=1.1e+02 Score=25.09 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=26.4
Q ss_pred ccEEEEEecCChhhhccCCCceEEEE-EEEEeC-CeEEEEEEEEeCCCCceeeee
Q 021878 103 QSTVDLILKSTEEDIKAWPRGFELRL-RISISP-GKLTLIPRVRNVDNKAFSFMF 155 (306)
Q Consensus 103 ~~~v~l~l~~~~~~~~~~P~~f~l~~-~y~L~~-~~L~i~~~v~N~~~~~~p~~~ 155 (306)
+..|++++.++- .++-||.|+-+. ..++.. ..-.+.|+++|.+++++.-..
T Consensus 35 ~R~i~V~F~a~~--~~~lpW~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A 87 (152)
T PF04442_consen 35 SRTITVRFDANV--NPGLPWEFKPEQRSVKVHPGETALVFYEATNPSDKPITGQA 87 (152)
T ss_dssp S-EEEEEEEEEE---TTS-EEEE-S-SEEEEETT--EEEEEEEEE-SSS-EE---
T ss_pred CcEEEEEEEeec--CCCCceEEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEEE
Confidence 445666665432 356788887543 333444 556778999999999876543
No 49
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=24.50 E-value=24 Score=25.24 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=16.2
Q ss_pred ceEEeceeeecCCeEeCCCCEEEE
Q 021878 257 TMLCVDSAAIENPIVLKPFEEWRG 280 (306)
Q Consensus 257 ~~vCvEp~~~~g~~~L~pGe~~~~ 280 (306)
.|-|+++.+. .+.|.|||+|++
T Consensus 56 yF~tLp~nT~--lmvL~~gq~W~g 77 (77)
T cd06535 56 YFPTLPDNTE--LVLLTPGQSWQG 77 (77)
T ss_pred HHhcCCCCcE--EEEEcCCCccCC
Confidence 3667776664 789999999863
No 50
>PLN02303 urease
Probab=23.66 E-value=81 Score=33.01 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=22.3
Q ss_pred EEEeCCeEEEEEEEEeCCCCceeeeeeccccc
Q 021878 130 ISISPGKLTLIPRVRNVDNKAFSFMFALRNYL 161 (306)
Q Consensus 130 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF 161 (306)
+.|..+.=+++++|+|+||+|.. .|-|-.|
T Consensus 143 i~~n~gr~~~~l~v~n~gdrpiq--vgSH~hf 172 (837)
T PLN02303 143 IIINAGRKAVKLKVTNTGDRPIQ--VGSHYHF 172 (837)
T ss_pred eeeCCCCCeEEEEEeeCCCCceE--eccccch
Confidence 56666667899999999999555 4666555
No 51
>PF14059 DUF4251: Domain of unknown function (DUF4251); PDB: 3FYF_B.
Probab=23.56 E-value=3.7e+02 Score=21.24 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=31.5
Q ss_pred cEEccccCCCCCCCCce----E---EeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCCceEEEEEEEEeCCeE
Q 021878 65 PVCFPQFGNLGLLEQHG----F---ARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPRGFELRLRISISPGKL 137 (306)
Q Consensus 65 p~lfP~~gr~~~~~~HG----f---ar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L 137 (306)
-+-.|++|+.|..|..| + +-....++... ..+...++|......+ ..++..+|-.++
T Consensus 54 ~~~LpYfg~~y~~p~~~g~ggi~f~~~~~~y~~~~~------kKg~~~i~f~~~~~~~---------~~~~~i~i~~ng- 117 (138)
T PF14059_consen 54 DSYLPYFGRAYSGPYGGGNGGITFDGPIKDYKMTTD------KKGNWRISFSVRGKED---------SYTFTITIFPNG- 117 (138)
T ss_dssp EEEESSCCC------------EEEEEEEEEEEEEE-------TT--EEEEEEEE-SS----------EEEEEEEE-TTS-
T ss_pred EEEecCCCceecCCcccCCCcEEEeccccceEEeec------cCCCEEEEEEECCCce---------EEEEEEEEecCC-
Confidence 34569999987666543 2 11222333322 1123345555543221 356777777877
Q ss_pred EEEEEEEeCCCCceeee
Q 021878 138 TLIPRVRNVDNKAFSFM 154 (306)
Q Consensus 138 ~i~~~v~N~~~~~~p~~ 154 (306)
...+.|......++-|.
T Consensus 118 ~a~l~V~~~~r~~Isy~ 134 (138)
T PF14059_consen 118 SASLSVNSNNRQPISYS 134 (138)
T ss_dssp EEEEEEEETS---EEEE
T ss_pred EEEEEEecCCCCEEEEE
Confidence 88888877655555543
No 52
>PF08187 Tetradecapep: Myoactive tetradecapeptides family; InterPro: IPR012619 This entry consists of myoactive tetradecapeptides that are isolated from the gut of Earthworms, Eisenia foetida (Common brandling worm) and Pheretima vittata (Earthworm). These peptides were termed ETP and PTP respectively. Both peptides showed a potent excitatory action on spontaneous contractions of the anterior gut. These peptides show similarity to Molluscan tetradecapeptides and Arthropodan tridecapeptides [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=23.50 E-value=31 Score=15.83 Aligned_cols=7 Identities=57% Similarity=1.189 Sum_probs=4.0
Q ss_pred ccccCCC
Q 021878 299 RRVLHGF 305 (306)
Q Consensus 299 ~~~~~~~ 305 (306)
.|+-|||
T Consensus 8 drishgf 14 (14)
T PF08187_consen 8 DRISHGF 14 (14)
T ss_pred hhhhcCC
Confidence 3566665
No 53
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=23.30 E-value=9.8e+02 Score=25.99 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=24.8
Q ss_pred EEEEECCCccEEEEecCCeEEEEEEeCCCeeeEEec
Q 021878 14 RIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMS 49 (306)
Q Consensus 14 ~~~L~~~~~~~a~v~~~Ga~l~s~~~~~g~e~L~~~ 49 (306)
.+.|+.++ .++++.-.=|.|+||+.. |+++|...
T Consensus 725 ~~~i~~~~-~~~~fdk~tG~l~s~~~~-g~~ll~~~ 758 (1021)
T PRK10340 725 SCTVRGYN-FAITFSKVSGKLTSWQVN-GESLLTRE 758 (1021)
T ss_pred EEEEEeCC-EEEEEECCcceEEEEEeC-CeeeecCC
Confidence 35566664 888888666799999984 88887543
No 54
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=22.87 E-value=2.7e+02 Score=22.54 Aligned_cols=22 Identities=14% Similarity=-0.068 Sum_probs=18.1
Q ss_pred CCeEeCCCCEEEEEEEEEEEec
Q 021878 268 NPIVLKPFEEWRGRQELSTVSS 289 (306)
Q Consensus 268 g~~~L~pGe~~~~~~~i~~~~~ 289 (306)
..-.|+||++.+..+.|-|..+
T Consensus 122 ~I~~L~pg~s~t~~lgIDF~DS 143 (145)
T PF14796_consen 122 EIESLEPGASVTVSLGIDFNDS 143 (145)
T ss_pred cccccCCCCeEEEEEEEecccC
Confidence 5668999999999988888654
No 55
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=22.42 E-value=1.1e+02 Score=20.99 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=15.5
Q ss_pred CCeEeCCCCEEEEEEEEEEEec
Q 021878 268 NPIVLKPFEEWRGRQELSTVSS 289 (306)
Q Consensus 268 g~~~L~pGe~~~~~~~i~~~~~ 289 (306)
..+.|+|||+.+.++.|..+..
T Consensus 25 ~rv~l~pGes~~v~~~l~~~~l 46 (71)
T PF14310_consen 25 ERVSLAPGESKTVSFTLPPEDL 46 (71)
T ss_dssp EEEEE-TT-EEEEEEEEEHHHH
T ss_pred EEEEECCCCEEEEEEEECHHHE
Confidence 4678999999998888876444
No 56
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=22.03 E-value=5.6e+02 Score=26.28 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=61.9
Q ss_pred cEEEEECCCccEEEEecCCeEEEEEEe-CCCeeeEEecCCC-CCCCCCcccCcccEEc--------------------cc
Q 021878 13 PRIILTEPTGSSAEVLLYGGQVVSWKN-ERREELLFMSSKS-FWKPPKAIRGGIPVCF--------------------PQ 70 (306)
Q Consensus 13 ~~~~L~~~~~~~a~v~~~Ga~l~s~~~-~~g~e~L~~~~~~-~~~~~~~irgg~p~lf--------------------P~ 70 (306)
.-++|.|+. +++.|..- |.|+|+.. ..|+|+|-..... .... .-.++| |+
T Consensus 714 d~~~L~Ng~-lrV~i~p~-G~itSl~d~~~grE~ld~~~Grn~~Ga------NQfVlfdD~PL~WqAWDte~ysle~y~v 785 (1078)
T KOG4342|consen 714 DSVTLDNGI-LRVKIDPT-GRITSLVDVASGREALDTAEGRNAVGA------NQFVLFDDVPLYWQAWDTEDYSLERYPV 785 (1078)
T ss_pred CeEEEECCE-EEEEECCC-CceeeeeehhcccchhcccccccccCc------ccEEEecCCccchhhhhhhhhceeccee
Confidence 357899997 99999866 79999986 4578887432210 0000 112333 22
Q ss_pred cCCCC--CCCCceEEeccCcEEEeeCCCCCCCCCccEEEEEecCChhhhccCCC-ceEEEEEEEEeCCeEEEEEEEE
Q 021878 71 FGNLG--LLEQHGFARNRFWSLDEDASPLPPANNQSTVDLILKSTEEDIKAWPR-GFELRLRISISPGKLTLIPRVR 144 (306)
Q Consensus 71 ~gr~~--~~~~HGfar~~~W~v~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~-~f~l~~~y~L~~~~L~i~~~v~ 144 (306)
.+.-. ...-.|-.|-..|-+...+ ....-+.+++|+... +..-+|+ .|+.++.+.=...=|++++-|.
T Consensus 786 l~k~k~v~v~~~g~lr~sv~v~~qIS-----e~s~~k~~isL~~~~-~~ak~~~V~f~teV~Whe~~KFLKVEFPv~ 856 (1078)
T KOG4342|consen 786 LGKAKTVAVGTEGGLRGSVWVLLQIS-----ENSRLKQEISLDVGC-TDAKLPYVRFHTEVHWHEAHKFLKVEFPVR 856 (1078)
T ss_pred cCCCceEEeecCCCcceEEEEEEEcC-----cccccceEEEEeccc-ccccCCceeeEEEEeehhcCceEEeecccc
Confidence 22211 1234455565667666553 112223333343222 2334565 5667776655556678877554
No 57
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.71 E-value=33 Score=24.69 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=16.6
Q ss_pred ceEEeceeeecCCeEeCCCCEEE
Q 021878 257 TMLCVDSAAIENPIVLKPFEEWR 279 (306)
Q Consensus 257 ~~vCvEp~~~~g~~~L~pGe~~~ 279 (306)
.|-|+++.+. .++|.|||.|+
T Consensus 57 YF~tLp~nT~--l~~l~~gq~W~ 77 (78)
T cd01615 57 YFQTLPDNTV--LMLLEPGQKWT 77 (78)
T ss_pred HHhcCCCCcE--EEEECCCCCcC
Confidence 4678888775 78999999985
Done!