Query 021880
Match_columns 306
No_of_seqs 252 out of 2028
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 100.0 5.5E-35 1.2E-39 270.0 20.0 222 72-303 1-224 (258)
2 PRK00448 polC DNA polymerase I 99.7 7.9E-19 1.7E-23 192.0 4.7 188 71-300 331-541 (1437)
3 PF02811 PHP: PHP domain; Int 99.7 5.9E-17 1.3E-21 138.6 15.3 78 75-158 1-80 (175)
4 smart00481 POLIIIAc DNA polyme 99.7 2.1E-17 4.5E-22 122.0 8.4 64 76-139 1-66 (67)
5 PRK05672 dnaE2 error-prone DNA 99.6 4.4E-15 9.4E-20 159.6 18.7 119 73-208 4-124 (1046)
6 PRK09248 putative hydrolase; V 99.6 1.1E-14 2.4E-19 133.4 13.7 68 73-140 3-79 (246)
7 PRK07135 dnaE DNA polymerase I 99.6 6.2E-15 1.3E-19 156.6 9.1 90 74-175 3-94 (973)
8 PRK09532 DNA polymerase III su 99.5 4.1E-14 8.9E-19 149.8 10.2 101 73-175 2-105 (874)
9 PRK05673 dnaE DNA polymerase I 99.5 4.1E-13 8.8E-18 145.6 17.9 122 74-207 2-127 (1135)
10 TIGR00594 polc DNA-directed DN 99.5 3.7E-13 8.1E-18 144.8 17.0 121 74-207 1-128 (1022)
11 PRK07279 dnaE DNA polymerase I 99.5 1.8E-13 3.8E-18 146.2 12.3 95 73-175 1-97 (1034)
12 PRK06826 dnaE DNA polymerase I 99.4 3.1E-13 6.7E-18 146.4 10.5 123 72-207 3-131 (1151)
13 COG0587 DnaE DNA polymerase II 99.4 4.7E-13 1E-17 143.8 11.3 102 73-177 3-106 (1139)
14 PRK07374 dnaE DNA polymerase I 99.4 3.7E-13 8.1E-18 145.8 10.3 101 73-175 2-107 (1170)
15 PRK05898 dnaE DNA polymerase I 99.4 4.5E-13 9.8E-18 141.9 10.7 94 73-176 1-96 (971)
16 TIGR00375 conserved hypothetic 99.4 1.3E-12 2.8E-17 126.3 12.6 74 75-159 2-88 (374)
17 PRK06920 dnaE DNA polymerase I 99.4 4.3E-12 9.4E-17 136.9 17.0 116 73-208 2-119 (1107)
18 TIGR01405 polC_Gram_pos DNA po 99.4 1.2E-12 2.5E-17 142.4 9.4 71 71-141 101-173 (1213)
19 PRK08392 hypothetical protein; 99.2 5E-11 1.1E-15 107.3 6.9 66 75-140 1-73 (215)
20 PRK00912 ribonuclease P protei 99.0 1.5E-09 3.3E-14 99.1 11.2 64 72-138 1-65 (237)
21 COG2176 PolC DNA polymerase II 99.0 6.2E-10 1.3E-14 117.9 8.1 71 72-142 334-406 (1444)
22 PRK07328 histidinol-phosphatas 98.9 1.8E-09 3.9E-14 100.3 7.2 219 73-300 2-262 (269)
23 COG1387 HIS2 Histidinol phosph 98.9 2.3E-09 5E-14 98.2 6.8 69 74-142 2-81 (237)
24 PRK06361 hypothetical protein; 98.9 5.2E-09 1.1E-13 93.6 8.3 61 79-139 1-69 (212)
25 PRK07945 hypothetical protein; 98.9 4.8E-09 1E-13 100.8 7.1 69 72-140 95-177 (335)
26 TIGR01856 hisJ_fam histidinol 98.7 1.7E-08 3.7E-13 93.1 6.3 65 75-139 1-87 (253)
27 PRK08123 histidinol-phosphatas 98.7 4.5E-08 9.8E-13 91.1 8.2 68 73-140 2-94 (270)
28 PRK08609 hypothetical protein; 98.7 6.1E-08 1.3E-12 99.2 8.7 71 70-140 331-415 (570)
29 PRK05588 histidinol-phosphatas 98.6 1.3E-07 2.8E-12 87.2 7.2 65 74-139 1-76 (255)
30 COG1379 PHP family phosphoeste 98.5 6.3E-07 1.4E-11 84.3 9.3 78 72-158 2-90 (403)
31 PRK07329 hypothetical protein; 98.2 2.3E-06 4.9E-11 78.7 5.4 61 75-139 2-78 (246)
32 COG4464 CapC Capsular polysacc 97.8 8E-05 1.7E-09 66.9 8.5 67 74-140 1-85 (254)
33 PRK06740 histidinol-phosphatas 97.4 0.00021 4.7E-09 68.6 5.9 27 85-111 58-84 (331)
34 PF12228 DUF3604: Protein of u 94.2 0.041 8.8E-07 56.5 3.5 44 72-115 6-69 (592)
35 TIGR00010 hydrolase, TatD fami 88.9 0.84 1.8E-05 40.9 5.5 63 74-138 1-63 (252)
36 COG0084 TatD Mg-dependent DNas 85.5 2.2 4.7E-05 39.8 6.2 64 72-137 1-64 (256)
37 COG1902 NemA NADH:flavin oxido 84.1 2.3 4.9E-05 41.6 5.9 25 250-274 82-108 (363)
38 PF01026 TatD_DNase: TatD rela 83.3 2.4 5.1E-05 38.9 5.4 63 75-138 1-63 (255)
39 PRK10812 putative DNAse; Provi 82.9 2.9 6.4E-05 38.8 5.9 54 73-127 2-58 (265)
40 PRK11449 putative deoxyribonuc 82.2 3.2 6.9E-05 38.4 5.8 54 73-127 4-57 (258)
41 cd02930 DCR_FMN 2,4-dienoyl-Co 80.6 4.3 9.3E-05 39.2 6.4 25 251-275 77-103 (353)
42 PRK10425 DNase TatD; Provision 79.8 4 8.8E-05 37.8 5.7 62 74-137 1-62 (258)
43 PRK13125 trpA tryptophan synth 79.1 4.9 0.00011 36.8 6.0 61 76-138 76-138 (244)
44 cd01310 TatD_DNAse TatD like p 77.7 6.1 0.00013 35.2 6.0 62 75-138 2-63 (251)
45 PRK13523 NADPH dehydrogenase N 76.5 5 0.00011 38.7 5.4 24 251-274 81-106 (337)
46 cd03309 CmuC_like CmuC_like. P 76.3 9.1 0.0002 36.7 7.1 47 251-299 198-244 (321)
47 PRK10605 N-ethylmaleimide redu 74.8 7.2 0.00016 38.0 6.1 24 251-274 79-104 (362)
48 cd04747 OYE_like_5_FMN Old yel 74.0 8.3 0.00018 37.6 6.3 24 251-274 78-103 (361)
49 cd04735 OYE_like_4_FMN Old yel 73.2 7.3 0.00016 37.7 5.7 24 251-274 78-103 (353)
50 cd02931 ER_like_FMN Enoate red 71.2 8.7 0.00019 37.6 5.8 22 251-272 83-106 (382)
51 PLN02411 12-oxophytodienoate r 70.8 10 0.00022 37.3 6.2 15 284-298 173-187 (391)
52 cd04734 OYE_like_3_FMN Old yel 70.8 10 0.00022 36.6 6.0 23 252-274 78-102 (343)
53 cd02803 OYE_like_FMN_family Ol 70.8 6.1 0.00013 37.3 4.5 24 251-274 77-102 (327)
54 TIGR01975 isoAsp_dipep isoaspa 70.2 50 0.0011 32.5 10.8 34 73-106 57-95 (389)
55 PF00724 Oxidored_FMN: NADH:fl 65.9 11 0.00024 36.3 5.1 24 251-274 80-105 (341)
56 cd04733 OYE_like_2_FMN Old yel 65.8 16 0.00034 35.1 6.2 24 251-274 82-107 (338)
57 cd02929 TMADH_HD_FMN Trimethyl 65.0 16 0.00035 35.6 6.2 23 252-274 84-108 (370)
58 cd02933 OYE_like_FMN Old yello 64.9 16 0.00035 35.2 6.0 23 252-274 78-102 (338)
59 cd02932 OYE_YqiM_FMN Old yello 64.8 15 0.00033 35.1 5.8 24 251-274 77-102 (336)
60 cd01295 AdeC Adenine deaminase 64.6 16 0.00034 36.1 6.1 60 73-134 10-74 (422)
61 TIGR01501 MthylAspMutase methy 62.6 25 0.00054 29.5 6.0 52 70-128 28-81 (134)
62 PRK07228 N-ethylammeline chlor 60.0 28 0.00061 34.3 7.0 63 73-137 57-148 (445)
63 TIGR00640 acid_CoA_mut_C methy 59.1 22 0.00047 29.6 5.1 41 86-126 38-80 (132)
64 PRK09358 adenosine deaminase; 58.7 9.2 0.0002 36.4 3.2 29 73-104 11-39 (340)
65 PTZ00170 D-ribulose-5-phosphat 57.5 47 0.001 30.1 7.4 58 72-139 65-124 (228)
66 PF08288 PIGA: PIGA (GPI ancho 56.6 11 0.00024 29.5 2.7 33 76-112 53-85 (90)
67 PTZ00124 adenosine deaminase; 53.8 12 0.00026 36.6 3.1 29 73-104 36-64 (362)
68 cd02072 Glm_B12_BD B12 binding 53.4 52 0.0011 27.4 6.4 41 88-128 37-79 (128)
69 COG5016 Pyruvate/oxaloacetate 53.0 47 0.001 33.2 7.0 48 90-137 100-148 (472)
70 PF09692 Arb1: Argonaute siRNA 51.8 6 0.00013 39.2 0.6 11 29-39 27-37 (396)
71 PRK12581 oxaloacetate decarbox 51.6 86 0.0019 31.8 8.8 43 90-132 107-150 (468)
72 COG0826 Collagenase and relate 49.9 30 0.00064 33.7 5.1 47 252-298 50-101 (347)
73 cd01292 metallo-dependent_hydr 47.2 18 0.00039 31.7 2.9 64 74-137 1-90 (275)
74 PF00962 A_deaminase: Adenosin 46.0 20 0.00043 33.8 3.2 28 73-103 3-30 (331)
75 PF01081 Aldolase: KDPG and KH 46.0 32 0.0007 30.7 4.4 61 86-158 65-129 (196)
76 cd05017 SIS_PGI_PMI_1 The memb 42.7 62 0.0014 25.7 5.2 39 87-131 56-94 (119)
77 COG2355 Zn-dependent dipeptida 42.6 47 0.001 31.9 5.1 23 254-276 205-228 (313)
78 TIGR01430 aden_deam adenosine 41.8 25 0.00054 33.2 3.2 29 74-105 3-31 (324)
79 PF00046 Homeobox: Homeobox do 40.1 61 0.0013 22.1 4.2 24 24-50 2-25 (57)
80 cd08582 GDPD_like_2 Glyceropho 39.8 59 0.0013 29.0 5.2 42 254-299 191-232 (233)
81 cd08562 GDPD_EcUgpQ_like Glyce 39.4 61 0.0013 28.6 5.1 41 254-298 189-229 (229)
82 PRK02261 methylaspartate mutas 38.3 1.2E+02 0.0025 25.3 6.3 39 88-126 41-81 (137)
83 PRK10657 isoaspartyl dipeptida 38.3 1E+02 0.0022 29.6 6.8 59 73-133 57-127 (388)
84 PF13704 Glyco_tranf_2_4: Glyc 38.3 58 0.0013 24.5 4.2 32 90-121 7-38 (97)
85 PRK08255 salicylyl-CoA 5-hydro 37.5 72 0.0016 34.2 6.1 23 252-274 476-501 (765)
86 cd01320 ADA Adenosine deaminas 37.3 32 0.00069 32.4 3.1 29 73-104 3-31 (325)
87 cd08563 GDPD_TtGDE_like Glycer 37.2 63 0.0014 28.8 4.9 41 254-298 190-230 (230)
88 TIGR01182 eda Entner-Doudoroff 36.8 54 0.0012 29.5 4.3 44 86-134 65-108 (204)
89 cd02071 MM_CoA_mut_B12_BD meth 36.8 78 0.0017 25.5 5.0 23 86-108 35-57 (122)
90 PF01120 Alpha_L_fucos: Alpha- 36.8 56 0.0012 31.5 4.8 53 83-137 86-159 (346)
91 cd08567 GDPD_SpGDE_like Glycer 36.6 77 0.0017 28.6 5.4 42 254-299 221-262 (263)
92 TIGR02967 guan_deamin guanine 36.5 1.1E+02 0.0023 29.7 6.7 40 95-136 97-138 (401)
93 COG0757 AroQ 3-dehydroquinate 36.1 84 0.0018 26.8 5.0 45 254-298 54-101 (146)
94 smart00812 Alpha_L_fucos Alpha 35.7 92 0.002 30.7 6.1 51 86-138 79-150 (384)
95 PRK06552 keto-hydroxyglutarate 34.8 61 0.0013 29.2 4.4 46 86-136 73-118 (213)
96 PRK10027 cryptic adenine deami 34.8 90 0.002 32.6 6.1 60 74-135 86-150 (588)
97 TIGR03564 F420_MSMEG_4879 F420 34.7 86 0.0019 28.7 5.5 47 92-138 3-50 (265)
98 PRK09875 putative hydrolase; P 34.4 2E+02 0.0043 27.2 7.9 75 25-129 129-205 (292)
99 cd05014 SIS_Kpsf KpsF-like pro 34.1 51 0.0011 26.1 3.5 26 87-112 60-85 (128)
100 cd08579 GDPD_memb_like Glycero 33.8 78 0.0017 27.9 4.9 41 254-298 180-220 (220)
101 PRK06015 keto-hydroxyglutarate 33.7 62 0.0013 29.0 4.2 44 86-134 61-104 (201)
102 PRK07114 keto-hydroxyglutarate 33.7 62 0.0014 29.4 4.3 44 86-134 76-119 (222)
103 PF06135 DUF965: Bacterial pro 33.5 63 0.0014 24.7 3.5 40 217-262 24-63 (79)
104 PRK02083 imidazole glycerol ph 33.0 2E+02 0.0043 26.1 7.6 28 85-112 150-177 (253)
105 COG2185 Sbm Methylmalonyl-CoA 32.8 80 0.0017 26.9 4.5 42 87-128 49-92 (143)
106 PF01208 URO-D: Uroporphyrinog 32.6 41 0.00089 31.8 3.1 46 251-298 220-265 (343)
107 cd08555 PI-PLCc_GDPD_SF Cataly 32.0 79 0.0017 27.1 4.5 39 254-295 139-177 (179)
108 PF13594 Amidohydro_5: Amidohy 31.9 40 0.00087 24.1 2.2 32 73-104 35-67 (68)
109 PTZ00246 proteasome subunit al 31.4 40 0.00087 30.8 2.7 37 74-111 4-41 (253)
110 PF00296 Bac_luciferase: Lucif 31.2 1.5E+02 0.0032 27.3 6.5 47 92-138 27-80 (307)
111 cd00717 URO-D Uroporphyrinogen 31.1 94 0.002 29.5 5.3 45 251-298 215-260 (335)
112 cd08564 GDPD_GsGDE_like Glycer 30.9 62 0.0013 29.6 3.9 46 253-299 212-258 (265)
113 PRK05473 hypothetical protein; 30.7 1.2E+02 0.0027 23.5 4.7 40 217-262 27-66 (86)
114 TIGR02336 1,3-beta-galactosyl- 30.7 1.4E+02 0.0031 31.7 6.7 42 252-293 291-332 (719)
115 PRK08203 hydroxydechloroatrazi 30.0 1.5E+02 0.0033 29.2 6.7 62 73-136 60-157 (451)
116 KOG2422 Uncharacterized conser 30.0 19 0.00041 37.4 0.3 12 98-109 239-250 (665)
117 TIGR01088 aroQ 3-dehydroquinat 29.5 1.1E+02 0.0025 25.9 4.8 45 254-298 53-100 (141)
118 PF13380 CoA_binding_2: CoA bi 29.4 1E+02 0.0022 24.8 4.4 41 90-133 68-109 (116)
119 cd08604 GDPD_SHV3_repeat_2 Gly 29.4 62 0.0013 30.5 3.6 44 254-300 240-296 (300)
120 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.1 68 0.0015 25.3 3.4 30 82-111 54-83 (126)
121 PRK09228 guanine deaminase; Pr 28.9 1.6E+02 0.0036 29.0 6.7 39 97-137 124-164 (433)
122 cd00443 ADA_AMPD Adenosine/AMP 28.8 49 0.0011 31.2 2.8 23 74-99 3-25 (305)
123 PRK11070 ssDNA exonuclease Rec 28.6 60 0.0013 33.8 3.6 30 85-115 135-164 (575)
124 COG1137 YhbG ABC-type (unclass 28.5 54 0.0012 30.0 2.8 31 88-123 176-206 (243)
125 TIGR01464 hemE uroporphyrinoge 28.4 1E+02 0.0023 29.2 5.1 45 251-298 218-263 (338)
126 TIGR00539 hemN_rel putative ox 28.4 1.1E+02 0.0023 29.5 5.2 41 253-295 70-116 (360)
127 TIGR03128 RuMP_HxlA 3-hexulose 27.8 1.8E+02 0.0039 25.2 6.2 43 89-133 63-108 (206)
128 cd02067 B12-binding B12 bindin 27.6 2.2E+02 0.0048 22.3 6.2 29 83-111 32-60 (119)
129 cd08612 GDPD_GDE4 Glycerophosp 27.6 77 0.0017 29.7 4.0 42 254-299 251-292 (300)
130 PLN02417 dihydrodipicolinate s 27.3 2.9E+02 0.0062 25.6 7.7 37 264-300 69-107 (280)
131 cd08580 GDPD_Rv2277c_like Glyc 27.2 79 0.0017 29.4 3.9 43 254-299 219-261 (263)
132 cd08556 GDPD Glycerophosphodie 27.2 1.4E+02 0.0029 25.1 5.1 38 254-295 150-187 (189)
133 PF02679 ComA: (2R)-phospho-3- 27.2 99 0.0022 28.6 4.4 46 253-301 56-109 (244)
134 cd08575 GDPD_GDE4_like Glycero 27.1 62 0.0014 29.7 3.2 42 254-299 221-262 (264)
135 cd08570 GDPD_YPL206cp_fungi Gl 27.1 93 0.002 27.8 4.3 41 254-298 194-234 (234)
136 COG1082 IolE Sugar phosphate i 27.0 2.1E+02 0.0045 25.7 6.6 47 86-132 13-63 (274)
137 cd01306 PhnM PhnM is believed 26.6 5.8E+02 0.012 24.5 15.8 45 71-115 78-123 (325)
138 PF13580 SIS_2: SIS domain; PD 26.5 67 0.0015 26.4 3.0 22 87-108 116-137 (138)
139 cd00086 homeodomain Homeodomai 26.4 1.9E+02 0.0041 19.3 4.9 24 24-50 2-25 (59)
140 TIGR01178 ade adenine deaminas 26.0 98 0.0021 32.0 4.7 61 73-135 51-116 (552)
141 PRK13936 phosphoheptose isomer 25.9 75 0.0016 27.9 3.4 23 89-111 126-148 (197)
142 TIGR00735 hisF imidazoleglycer 25.9 2.1E+02 0.0045 26.1 6.4 52 87-138 29-85 (254)
143 cd08574 GDPD_GDE_2_3_6 Glycero 25.7 92 0.002 28.4 4.0 38 254-295 213-250 (252)
144 PTZ00372 endonuclease 4-like p 25.6 1.3E+02 0.0028 30.1 5.3 52 75-129 131-191 (413)
145 PRK13111 trpA tryptophan synth 25.5 1.4E+02 0.003 27.7 5.2 51 87-138 103-153 (258)
146 cd04795 SIS SIS domain. SIS (S 25.3 80 0.0017 22.9 3.0 22 87-108 60-81 (87)
147 cd08601 GDPD_SaGlpQ_like Glyce 25.3 1.3E+02 0.0027 27.3 4.8 42 254-299 208-249 (256)
148 PRK05628 coproporphyrinogen II 25.2 1.2E+02 0.0026 29.4 4.9 55 237-295 64-124 (375)
149 PRK09454 ugpQ cytoplasmic glyc 25.1 90 0.0019 28.3 3.8 42 254-299 199-240 (249)
150 PRK09057 coproporphyrinogen II 25.0 1.4E+02 0.003 29.0 5.3 55 237-295 60-120 (380)
151 TIGR03572 WbuZ glycosyl amidat 24.9 2.4E+02 0.0052 25.1 6.6 52 88-139 30-86 (232)
152 cd01309 Met_dep_hydrolase_C Me 24.9 1.9E+02 0.0041 27.7 6.2 53 72-133 192-244 (359)
153 TIGR00683 nanA N-acetylneurami 24.8 3.5E+02 0.0075 25.3 7.8 37 264-300 69-107 (290)
154 COG1737 RpiR Transcriptional r 24.8 62 0.0013 30.2 2.7 25 87-111 190-214 (281)
155 PRK08599 coproporphyrinogen II 24.7 1.4E+02 0.0031 28.8 5.3 42 252-295 69-116 (377)
156 cd08602 GDPD_ScGlpQ1_like Glyc 24.6 73 0.0016 30.2 3.2 44 254-298 256-309 (309)
157 PF13344 Hydrolase_6: Haloacid 24.5 2.3E+02 0.005 22.0 5.6 41 250-291 16-57 (101)
158 PF01726 LexA_DNA_bind: LexA D 24.5 1.4E+02 0.003 21.7 4.0 42 187-228 16-57 (65)
159 cd08583 PI-PLCc_GDPD_SF_unchar 24.5 1.1E+02 0.0024 27.4 4.3 41 254-298 195-235 (237)
160 PRK07583 cytosine deaminase-li 24.2 1.8E+02 0.004 28.7 6.1 59 73-131 226-290 (438)
161 PRK09997 hydroxypyruvate isome 24.0 2.3E+02 0.0049 25.6 6.3 46 85-131 12-57 (258)
162 cd05005 SIS_PHI Hexulose-6-pho 23.8 91 0.002 26.6 3.4 24 89-112 90-113 (179)
163 PRK06380 metal-dependent hydro 23.8 2.5E+02 0.0054 27.3 6.9 60 73-136 55-142 (418)
164 PRK06294 coproporphyrinogen II 23.7 1.4E+02 0.003 29.0 5.0 55 237-295 63-119 (370)
165 TIGR03234 OH-pyruv-isom hydrox 23.7 2.3E+02 0.005 25.3 6.2 44 87-131 13-56 (254)
166 PF13653 GDPD_2: Glycerophosph 23.7 66 0.0014 19.9 1.8 20 279-298 10-29 (30)
167 cd08561 GDPD_cytoplasmic_ScUgp 23.5 1.3E+02 0.0028 27.1 4.6 42 254-299 202-243 (249)
168 TIGR03559 F420_Rv3520c probabl 23.4 1.8E+02 0.0038 27.7 5.6 46 92-137 17-63 (325)
169 cd05710 SIS_1 A subgroup of th 23.2 1E+02 0.0023 24.5 3.4 27 86-112 59-85 (120)
170 cd01298 ATZ_TRZ_like TRZ/ATZ f 22.9 1.8E+02 0.0038 27.8 5.6 61 73-136 57-146 (411)
171 COG2141 Coenzyme F420-dependen 22.8 2E+02 0.0043 27.0 5.8 98 91-192 19-132 (336)
172 cd03174 DRE_TIM_metallolyase D 22.7 3.3E+02 0.0071 24.3 7.1 49 91-139 77-140 (265)
173 COG2100 Predicted Fe-S oxidore 22.7 1.6E+02 0.0035 28.8 5.0 50 247-296 171-221 (414)
174 TIGR03127 RuMP_HxlB 6-phospho 22.6 98 0.0021 26.3 3.4 24 89-112 87-110 (179)
175 PRK06582 coproporphyrinogen II 22.6 1.5E+02 0.0032 29.1 5.0 55 237-295 67-127 (390)
176 PRK05742 nicotinate-nucleotide 22.6 3.8E+02 0.0082 25.2 7.5 61 242-305 209-270 (277)
177 TIGR03560 F420_Rv1855c probabl 22.6 2E+02 0.0044 25.8 5.5 23 90-112 15-37 (227)
178 PF01380 SIS: SIS domain SIS d 22.6 80 0.0017 24.8 2.7 30 83-112 62-91 (131)
179 PRK09856 fructoselysine 3-epim 22.6 2E+02 0.0042 26.1 5.6 45 87-131 12-64 (275)
180 cd03749 proteasome_alpha_type_ 22.6 75 0.0016 28.2 2.7 35 76-111 2-37 (211)
181 KOG0483 Transcription factor H 22.5 1.2E+02 0.0026 27.2 3.9 41 22-103 50-90 (198)
182 PF07722 Peptidase_C26: Peptid 22.5 1.6E+02 0.0035 26.3 4.9 37 254-294 27-63 (217)
183 cd03753 proteasome_alpha_type_ 22.4 80 0.0017 27.9 2.9 37 75-112 1-38 (213)
184 PRK13015 3-dehydroquinate dehy 22.3 1.5E+02 0.0032 25.4 4.3 45 254-298 55-102 (146)
185 cd05006 SIS_GmhA Phosphoheptos 22.3 86 0.0019 26.7 3.0 22 89-110 116-137 (177)
186 TIGR03841 F420_Rv3093c probabl 22.2 1.8E+02 0.0039 27.2 5.3 49 91-139 13-62 (301)
187 COG0329 DapA Dihydrodipicolina 22.1 1.5E+02 0.0033 28.0 4.8 41 261-301 68-111 (299)
188 TIGR01463 mtaA_cmuA methyltran 22.1 1.2E+02 0.0027 28.6 4.3 44 251-297 220-263 (340)
189 cd08565 GDPD_pAtGDE_like Glyce 22.1 1.6E+02 0.0034 26.6 4.7 41 254-299 192-232 (235)
190 TIGR03103 trio_acet_GNAT GNAT- 22.0 1.8E+02 0.0039 30.0 5.7 10 41-50 443-452 (547)
191 cd08606 GDPD_YPL110cp_fungi Gl 22.0 1.1E+02 0.0024 28.3 3.8 43 254-299 235-278 (286)
192 cd08572 GDPD_GDE5_like Glycero 22.0 1.4E+02 0.003 28.0 4.5 41 254-297 251-292 (293)
193 PRK15108 biotin synthase; Prov 21.9 1.7E+02 0.0038 28.1 5.3 40 253-295 113-152 (345)
194 PRK04147 N-acetylneuraminate l 21.7 1.7E+02 0.0036 27.3 5.0 19 281-299 91-109 (293)
195 PRK05904 coproporphyrinogen II 21.7 1.5E+02 0.0033 28.6 4.9 55 237-295 61-119 (353)
196 cd00951 KDGDH 5-dehydro-4-deox 21.5 4.1E+02 0.009 24.7 7.6 37 264-301 68-106 (289)
197 cd01310 TatD_DNAse TatD like p 21.5 3.4E+02 0.0074 23.7 6.8 48 73-129 122-169 (251)
198 cd00952 CHBPH_aldolase Trans-o 21.3 1.6E+02 0.0034 27.9 4.8 33 266-298 78-112 (309)
199 cd03752 proteasome_alpha_type_ 21.3 84 0.0018 27.8 2.8 36 75-111 3-39 (213)
200 cd03751 proteasome_alpha_type_ 21.2 99 0.0021 27.5 3.2 36 75-111 4-40 (212)
201 cd08600 GDPD_EcGlpQ_like Glyce 21.1 1.1E+02 0.0023 29.3 3.5 43 253-298 265-317 (318)
202 cd01303 GDEase Guanine deamina 21.0 3.5E+02 0.0076 26.6 7.3 39 96-136 119-159 (429)
203 TIGR03558 oxido_grp_1 lucifera 20.8 1.9E+02 0.0042 27.2 5.3 50 91-140 23-79 (323)
204 PRK00115 hemE uroporphyrinogen 20.7 1.3E+02 0.0028 28.8 4.1 45 251-298 224-269 (346)
205 PLN02591 tryptophan synthase 20.7 1.8E+02 0.0039 26.9 4.9 46 88-134 93-138 (250)
206 CHL00200 trpA tryptophan synth 20.4 2.3E+02 0.0051 26.3 5.6 51 87-138 105-155 (263)
207 PF09339 HTH_IclR: IclR helix- 20.2 1.1E+02 0.0024 20.6 2.6 46 181-227 3-48 (52)
208 PF13865 FoP_duplication: C-te 20.1 75 0.0016 23.7 1.8 20 22-41 33-53 (74)
209 PRK06687 chlorohydrolase; Vali 20.1 2.3E+02 0.005 27.6 5.8 62 73-136 59-151 (419)
210 TIGR00510 lipA lipoate synthas 20.1 5.9E+02 0.013 24.2 8.3 23 90-112 96-120 (302)
211 cd00466 DHQase_II Dehydroquina 20.1 1.7E+02 0.0037 24.8 4.1 45 254-298 53-100 (140)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=270.00 Aligned_cols=222 Identities=37% Similarity=0.508 Sum_probs=201.2
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHH-HHHHhCCCeEEEEeEEEEEeccCCCCCCCC
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~-~~~~~~~i~~i~GiEis~~~~~~~~~~~~~ 150 (306)
|+++||||||++|||.++|.++++.|.+.|++++||||||++.|+.++. ......++.+|||+|+++.+ .+..
T Consensus 1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~------~~~~ 74 (258)
T COG0613 1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTW------GGHI 74 (258)
T ss_pred CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeeccc------CCeE
Confidence 5889999999999999999999999999999999999999999999987 44556789999999999998 7889
Q ss_pred EEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChhHHHHHHHHcCccccH
Q 021880 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (306)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~~~~~~~~hia~aLv~~g~~~~~ 230 (306)
+|+++++.+.. ...+.+.+.+.+..|.++.+++.+++....++..|+.+...++.+ .+.+.|++..+++.++..+.
T Consensus 75 ih~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~ 150 (258)
T COG0613 75 IHILGLGIDIT---DEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTR 150 (258)
T ss_pred EEEEeeccccc---chhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccch
Confidence 99999997632 345788888888899999999999998889999999888777654 46799999999999999999
Q ss_pred HHHHHHhhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCh-HHHHHHHHHcCCCEEEEecCCCCCC
Q 021880 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDGKLH 303 (306)
Q Consensus 231 ~~~~~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGiaVLAHP~~~~~~-~~li~~l~~~GldGiEv~~~~~~~~ 303 (306)
...|++|+..++++|+++.+.+.++.|..|+.+||++|+|||.+|..+ ..++..+++.|.||||+++...+..
T Consensus 151 ~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~ 224 (258)
T COG0613 151 QGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPN 224 (258)
T ss_pred HHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcc
Confidence 999999999999999999999999999999999999999999998765 6799999999999999999987654
No 2
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=99.74 E-value=7.9e-19 Score=192.03 Aligned_cols=188 Identities=26% Similarity=0.390 Sum_probs=128.3
Q ss_pred CceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCC
Q 021880 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESE 148 (306)
Q Consensus 71 ~~~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~ 148 (306)
...++|||+||.+| ||.++|++++++|++.|+++||||||+++.|++++.+++++.||++|+|+|+++.+ .
T Consensus 331 ~~KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~~~~~------~- 403 (1437)
T PRK00448 331 EEKRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEANLVD------D- 403 (1437)
T ss_pred ccceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeEEEec------c-
Confidence 34689999999999 99999999999999999999999999999999999999999999999999999976 2
Q ss_pred CCEEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChhHHHHHHHHcCccc
Q 021880 149 EPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (306)
Q Consensus 149 ~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~~~~~~~~hia~aLv~~g~~~ 228 (306)
.+|+ +|+.+. ..|.+ ...++--++.-|++..++++..++. ++++.|.+.
T Consensus 404 -~~~i-v~~~~~-----~~L~~------------~~~VVfDLETTGL~~~~deIIEIgA------------V~V~~G~ii 452 (1437)
T PRK00448 404 -GVPI-VYNEVD-----RDLKD------------ATYVVFDVETTGLSAVYDEIIEIGA------------VKIKNGEII 452 (1437)
T ss_pred -ceeE-EecCCc-----hhhcc------------CcEEEEEhhhcCCCCchhhhheeee------------EEEeCCeEe
Confidence 2455 577431 11111 1123334455567666666655431 111222211
Q ss_pred cHHHHHHHhhhCCCC-------------ccccCCCCCHHHHHHHHHH-cCCEEEEeCCCCCCCh--HHH-----HHHHHH
Q 021880 229 NLKQAFARYLYDGGP-------------AYSTGSEPLAEVAVQLIHR-TGGLAVLAHPWALKNP--AAI-----IRKLKD 287 (306)
Q Consensus 229 ~~~~~~~~yl~~~~~-------------~yv~~~~~~~eevI~~I~~-aGGiaVLAHP~~~~~~--~~l-----i~~l~~ 287 (306)
+.|+.|+..+.+ .++. ..+++++|++.+++ +||.+++|||+.+... ... ++.+..
T Consensus 453 ---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~EaL~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~ 528 (1437)
T PRK00448 453 ---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEVLPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKN 528 (1437)
T ss_pred ---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccc
Confidence 223333333321 2222 45789999999999 7999999999976542 111 122344
Q ss_pred cCCCEEEEecCCC
Q 021880 288 VGLHGLEVYRSDG 300 (306)
Q Consensus 288 ~GldGiEv~~~~~ 300 (306)
.++|++|+++..+
T Consensus 529 ~~IDTLelar~l~ 541 (1437)
T PRK00448 529 PVIDTLELSRFLY 541 (1437)
T ss_pred cceeHHHHHHHHc
Confidence 5678888876543
No 3
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=99.74 E-value=5.9e-17 Score=138.63 Aligned_cols=78 Identities=36% Similarity=0.674 Sum_probs=68.3
Q ss_pred EceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCCEE
Q 021880 75 FELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVH 152 (306)
Q Consensus 75 ~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~vH 152 (306)
||||+||.|| ||..+|++++++|++.|++.+|||||+++.++.++.+.+++.+|.+++|+|+.... ....+|
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~~~~~------~~~~~~ 74 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEIESFE------RNDPFD 74 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEESHHH------HTTTEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEeecccc------ccchhH
Confidence 6999999999 99999999999999999999999999999999999999999999999999995433 355678
Q ss_pred EEEEec
Q 021880 153 ILAYYS 158 (306)
Q Consensus 153 iL~y~~ 158 (306)
++.+..
T Consensus 75 ~~i~~~ 80 (175)
T PF02811_consen 75 YIIGSV 80 (175)
T ss_dssp EEEEEG
T ss_pred HHHHHh
Confidence 777754
No 4
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=99.72 E-value=2.1e-17 Score=122.02 Aligned_cols=64 Identities=44% Similarity=0.704 Sum_probs=61.9
Q ss_pred ceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEE
Q 021880 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 139 (306)
Q Consensus 76 dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~ 139 (306)
|||+||.|| ||..+|++++++|+++|++.++||||+++.|+.++++++++.|+++|+|+|+++.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~~~~ 66 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANIV 66 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEEEec
Confidence 799999999 9999999999999999999999999999999999999999999999999999863
No 5
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=99.65 E-value=4.4e-15 Score=159.63 Aligned_cols=119 Identities=33% Similarity=0.441 Sum_probs=98.9
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~ 150 (306)
.++||||||.|| ||.++|++++++|++.|++++|||||+++.|+.++.++|++.||++|+|+|+++.+.. .+..
T Consensus 4 ~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~----~~~~ 79 (1046)
T PRK05672 4 PYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGPDP----DPGG 79 (1046)
T ss_pred ceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEEEEEecCC----CCCC
Confidence 378999999999 9999999999999999999999999999999999999999999999999999986421 2345
Q ss_pred EEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCC
Q 021880 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGK 208 (306)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~ 208 (306)
+|+++|+.+ +.+|.+|+++.+..+..+. ..+..++++.+.+...+
T Consensus 80 ~hllllAkn--~~Gy~nL~kL~S~a~~~~~-----------~~~p~i~~e~L~~~~~g 124 (1046)
T PRK05672 80 PHLLVLARD--REGYGRLSRLITRARLRAG-----------KGEYRLDLDDLAEPAGG 124 (1046)
T ss_pred ceEEEEEcC--hHHHHHHHHHHHHHHHhCC-----------CCCccccHHHHHhhcCC
Confidence 899999976 4578888888776543221 34567889998876543
No 6
>PRK09248 putative hydrolase; Validated
Probab=99.60 E-value=1.1e-14 Score=133.41 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=53.9
Q ss_pred eEEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC-CCCh------HHHHHHH-HhCCCeEEEEeEEEEEe
Q 021880 73 VVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT-MSGI------PEAIETA-RRFGMKIIPGVEISTIF 140 (306)
Q Consensus 73 ~~~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~t-~~g~------~~~~~~~-~~~~i~~i~GiEis~~~ 140 (306)
+++|+|+||.|| ||..++++++++|++.|++.+|||||.. ..+. ..+.++. +..++.++.|+|+....
T Consensus 3 ~~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~i~il~GiE~~~~~ 79 (246)
T PRK09248 3 YPVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAITDHGPDMPGAPHYWHFGNLRVLPRKVDGVGILRGIEANIKN 79 (246)
T ss_pred cceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCcCCCCCHHHHHHHHHHHHhhcCCeEEEEEEecccc
Confidence 678999999999 8999999999999999999999999985 3331 1121211 23689999999998753
No 7
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=99.56 E-value=6.2e-15 Score=156.65 Aligned_cols=90 Identities=26% Similarity=0.399 Sum_probs=80.8
Q ss_pred EEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCCE
Q 021880 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPV 151 (306)
Q Consensus 74 ~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~v 151 (306)
+++|||||.|| ||+++|+++++.|++.|++.+|||||+++.|+.++.+.|++.||++|+|+|+++.. ..+
T Consensus 3 fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~Ei~~~~--------~~l 74 (973)
T PRK07135 3 LINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVEN--------FRF 74 (973)
T ss_pred ccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEEEEecC--------cEE
Confidence 68999999999 99999999999999999999999999999999999999999999999999998743 356
Q ss_pred EEEEEeccCCCCcchHHHHHHHHH
Q 021880 152 HILAYYSSCGPSKYEELENFLANI 175 (306)
Q Consensus 152 HiL~y~~d~~~~~~~~L~~~l~~~ 175 (306)
|+||.. ..+|.+|+++.+..
T Consensus 75 ~LLAkn----~~GY~nL~kL~S~~ 94 (973)
T PRK07135 75 ILLAKN----YSGYKLLNELSSKK 94 (973)
T ss_pred EEEECC----HHHHHHHHHHHHHH
Confidence 777765 45799999987754
No 8
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=99.51 E-value=4.1e-14 Score=149.84 Aligned_cols=101 Identities=30% Similarity=0.373 Sum_probs=85.1
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCC-CCCC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-ESEE 149 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~-~~~~ 149 (306)
.++|||+||.|| ||..+|++++++|++.|++.+|||||+++.|..++.+.|++.||++|+|+|+++..+.... ....
T Consensus 2 ~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~ 81 (874)
T PRK09532 2 SFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRR 81 (874)
T ss_pred CccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccc
Confidence 478999999999 9999999999999999999999999999999999999999999999999999986422100 1123
Q ss_pred CEEEEEEeccCCCCcchHHHHHHHHH
Q 021880 150 PVHILAYYSSCGPSKYEELENFLANI 175 (306)
Q Consensus 150 ~vHiL~y~~d~~~~~~~~L~~~l~~~ 175 (306)
..|++.+..+ ..+|.+|+++.+..
T Consensus 82 ~~~lvLLAkN--~~GY~NL~kL~S~a 105 (874)
T PRK09532 82 KYHQVVLAKN--TQGYKNLVKLTTIS 105 (874)
T ss_pred cceeEEEecC--HHHHHHHHHHHhHH
Confidence 4688888865 46799998887653
No 9
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.51 E-value=4.1e-13 Score=145.56 Aligned_cols=122 Identities=25% Similarity=0.277 Sum_probs=95.2
Q ss_pred EEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccC-C-CCCCC
Q 021880 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G-SESEE 149 (306)
Q Consensus 74 ~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~-~-~~~~~ 149 (306)
+++||+||.|| ||.++|++++++|++.|++.+|||||+++.|+.++.+.|++.||++|+|+|+++.+... + ...+.
T Consensus 2 fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~ 81 (1135)
T PRK05673 2 FVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGGA 81 (1135)
T ss_pred cccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHcCCeEEEEEEEEecCCcccccccccC
Confidence 57999999999 99999999999999999999999999999999999999999999999999999976321 0 01123
Q ss_pred CEEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 021880 150 PVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (306)
Q Consensus 150 ~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~ 207 (306)
..|++.+..+ ..+|.+|+++.+...... .......++++.+.++..
T Consensus 82 ~~~l~llAkn--~~Gy~nL~kL~S~~~~~~----------~~~~~p~i~~~~L~~~~~ 127 (1135)
T PRK05673 82 YTHLTLLAKN--ETGYRNLFKLSSRAYLEG----------QYGYKPRIDREWLAEHSE 127 (1135)
T ss_pred CCceEEEecC--HHHHHHHHHHHHHHHhcC----------CCCCCcccCHHHHHccCC
Confidence 4688888865 567999988876543210 000123477888876643
No 10
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=3.7e-13 Score=144.80 Aligned_cols=121 Identities=28% Similarity=0.350 Sum_probs=94.6
Q ss_pred EEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccC-C----CC
Q 021880 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G----SE 146 (306)
Q Consensus 74 ~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~-~----~~ 146 (306)
+++||+||.|| ||..+|++++++|++.|++.+|||||+++.|+.++.+.|++.||++|+|+|+++..... + ..
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~ 80 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISK 80 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccc
Confidence 47999999999 99999999999999999999999999999999999999999999999999999975321 0 00
Q ss_pred CCCCEEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 021880 147 SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (306)
Q Consensus 147 ~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~ 207 (306)
.+...|++.+..+ ..+|.+|+++.+....... .....++++++.++..
T Consensus 81 ~~~~~~l~llAkn--~~Gy~nL~kL~S~a~~~~~-----------~~~p~i~~~~l~~~~~ 128 (1022)
T TIGR00594 81 GKEAYHLILLAKN--NTGYRNLMKLSSLAYLEGF-----------YYKPRIDKELLEEHSE 128 (1022)
T ss_pred cCCCccEEEEeCC--HHHHHHHHHHHHHHHhhCC-----------CCCcccCHHHHHhcCC
Confidence 1223588888865 5679999988876542100 0123467788776543
No 11
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.48 E-value=1.8e-13 Score=146.24 Aligned_cols=95 Identities=24% Similarity=0.377 Sum_probs=84.8
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~ 150 (306)
+++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|++.|++.||++|.|+|+.... .+..
T Consensus 1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~------~~~~ 74 (1034)
T PRK07279 1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFV------EEQE 74 (1034)
T ss_pred CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHcCCcEEEEEEEEEec------CCCc
Confidence 478999999999 99999999999999999999999999999999999999999999999999999865 2234
Q ss_pred EEEEEEeccCCCCcchHHHHHHHHH
Q 021880 151 VHILAYYSSCGPSKYEELENFLANI 175 (306)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~ 175 (306)
.|++.+..+ ..+|.+|+++.+..
T Consensus 75 ~~lvlLAkN--~~GY~nL~kL~s~~ 97 (1034)
T PRK07279 75 VTLRLIAKN--TQGYKNLLKISTAK 97 (1034)
T ss_pred ceEEEEECC--HHHHHHHHHHHHHh
Confidence 699999875 46799998887643
No 12
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.44 E-value=3.1e-13 Score=146.37 Aligned_cols=123 Identities=25% Similarity=0.383 Sum_probs=94.9
Q ss_pred ceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccC-CCC--
Q 021880 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-GSE-- 146 (306)
Q Consensus 72 ~~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~-~~~-- 146 (306)
+.++|||+||.|| ||.++|++++++|++.|++.+|||||+++.|+.++.+.|++.||++|+|+|+++..... +..
T Consensus 3 m~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~ 82 (1151)
T PRK06826 3 MSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKEPD 82 (1151)
T ss_pred CcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhCCCEEEEEEEEEecCCcccccccc
Confidence 4588999999999 99999999999999999999999999999999999999999999999999999864221 000
Q ss_pred -CCCCEEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 021880 147 -SEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (306)
Q Consensus 147 -~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~ 207 (306)
.....|++.+..+ ..+|.+|+++.+....... -....++++.+.++..
T Consensus 83 ~~~~~~~l~lLAkn--~~Gy~nL~kL~S~a~~~~~-----------~~~pri~~~~L~~~~~ 131 (1151)
T PRK06826 83 IDNETYHLVLLAKN--ETGYKNLMKIVSKAFTEGF-----------YYKPRVDHELLKEHSE 131 (1151)
T ss_pred ccCCCceEEEEEcC--cHHHHHHHHHHHHHhccCC-----------cCCccCCHHHHHhhCC
Confidence 1223589888875 5679999888765432100 0122467777766654
No 13
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=99.43 E-value=4.7e-13 Score=143.77 Aligned_cols=102 Identities=29% Similarity=0.356 Sum_probs=88.7
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~ 150 (306)
.++.|||||.|| ||..++++|+++|++.|+.++|||||+++.|..+|+..|++.||++|.|+|+.....++. .....
T Consensus 3 ~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~-~~~~~ 81 (1139)
T COG0587 3 SFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF-RGRER 81 (1139)
T ss_pred ceeecccccccchhccccCHHHHHHHHHHcCCCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEEEeccccc-cccCC
Confidence 689999999999 999999999999999999999999999999999999999999999999999988764321 12345
Q ss_pred EEEEEEeccCCCCcchHHHHHHHHHHh
Q 021880 151 VHILAYYSSCGPSKYEELENFLANIRD 177 (306)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~~ 177 (306)
.|++.|..+ +.+|.+|+.+.+....
T Consensus 82 ~~l~llAkn--~~GY~nL~~LsS~a~~ 106 (1139)
T COG0587 82 PHLLLLAKN--NEGYKNLVKLSSIAYL 106 (1139)
T ss_pred ccEEEEeCC--HHHHHHHHHHHHHHHh
Confidence 899999876 5689999988876543
No 14
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.43 E-value=3.7e-13 Score=145.80 Aligned_cols=101 Identities=31% Similarity=0.427 Sum_probs=84.9
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCC---CC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS---ES 147 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~---~~ 147 (306)
.+++||+||.|| ||..+|++++++|++.|++.+|||||+++.|+.++.+.|++.||++|+|+|+.+..+.... ..
T Consensus 2 ~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~ 81 (1170)
T PRK07374 2 AFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKK 81 (1170)
T ss_pred CcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999986421100 01
Q ss_pred CCCEEEEEEeccCCCCcchHHHHHHHHH
Q 021880 148 EEPVHILAYYSSCGPSKYEELENFLANI 175 (306)
Q Consensus 148 ~~~vHiL~y~~d~~~~~~~~L~~~l~~~ 175 (306)
+...|++.+..+ ..+|.+|+++.+..
T Consensus 82 ~~~~~l~LLAkN--~~Gy~nL~kL~S~a 107 (1170)
T PRK07374 82 EKRYHLVVLAKN--ATGYKNLVKLTTIS 107 (1170)
T ss_pred cccceEEEEEeC--cHHHHHHHHHHHHH
Confidence 123588888865 56899999887654
No 15
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=99.43 E-value=4.5e-13 Score=141.94 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=84.5
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~ 150 (306)
+++.|||||.|| ||..+|++++++|++.|++++|||||+++.|..+|++.|++.||++|.|+|+.+.. ..
T Consensus 1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~gIkPIiG~e~~v~~--------~~ 72 (971)
T PRK05898 1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPIIGLEIEYQS--------TN 72 (971)
T ss_pred CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHcCCCEEEEEEEEEcC--------CC
Confidence 468999999999 99999999999999999999999999999999999999999999999999999743 24
Q ss_pred EEEEEEeccCCCCcchHHHHHHHHHH
Q 021880 151 VHILAYYSSCGPSKYEELENFLANIR 176 (306)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~ 176 (306)
.|++.+..+ ..+|.+|+++.+...
T Consensus 73 ~~lvLLAkn--~~GY~nL~kLsS~~~ 96 (971)
T PRK05898 73 ATLVLYAKN--YNGYLNLIKISSFIM 96 (971)
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHHH
Confidence 688888865 568999999887654
No 16
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=99.42 E-value=1.3e-12 Score=126.30 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=58.1
Q ss_pred EceeeeCCCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHH----HhCCCe------EEEEeEEEEEec
Q 021880 75 FELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA----RRFGMK------IIPGVEISTIFC 141 (306)
Q Consensus 75 ~dlH~HT~~S---DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~----~~~~i~------~i~GiEis~~~~ 141 (306)
+|||+||.+| +..++|+.|+++|...||+.||+|||++.. ..+.... .+.|+. +++|+|+..
T Consensus 2 aDLHIHs~~S~a~~~~m~~~~i~~~a~~KGldvIg~~D~~~p~--~~~~~~~~~~~~~~Gl~~~~ei~~~~~~ei~~--- 76 (374)
T TIGR00375 2 ADLHIHIGRTRGAKTLTLDRILVEQSRLKGLELLGIIDCHSPL--EEGISSGKRELDGGGIRYRSELSIYDEACVDE--- 76 (374)
T ss_pred CccceecCcCCCCCccCCHHHHHHHHHhcCCEEEEEecCCCch--HHHHhhcccccCCCCeeeccceeecccccccc---
Confidence 6999999998 778999999999999999999999999884 2222221 345665 777777753
Q ss_pred cCCCCCCCCEEEEEEecc
Q 021880 142 QRGSESEEPVHILAYYSS 159 (306)
Q Consensus 142 ~~~~~~~~~vHiL~y~~d 159 (306)
.+++|+|+|+.+
T Consensus 77 ------~~~VH~L~~fp~ 88 (374)
T TIGR00375 77 ------SGPIHVLLFMPT 88 (374)
T ss_pred ------CCCceEEEECCC
Confidence 457999999854
No 17
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.41 E-value=4.3e-12 Score=136.88 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=93.5
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~ 150 (306)
.++.||+||.|| ||..+|++|+++|++.|++++|||||+++.|..+|++.|++.||++|.|+|+...... ....
T Consensus 2 ~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~----~~~~ 77 (1107)
T PRK06920 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEE----EEKS 77 (1107)
T ss_pred CceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCC----CCCc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999985411 1123
Q ss_pred EEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCC
Q 021880 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGK 208 (306)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~ 208 (306)
.|++.+..+ ..+|.+|+++.+..... ....++++.+.++..+
T Consensus 78 ~~l~LLAkn--~~Gy~nL~kL~S~~~~~--------------~~p~i~~~~L~~~~~g 119 (1107)
T PRK06920 78 YPLVLLAEN--EIGYQNLLKISSSIMTK--------------SKEGIPKKWLAHYAKG 119 (1107)
T ss_pred ccEEEEeCC--HHHHHHHHHHHHHHHhc--------------CCCCCCHHHHHhhCCC
Confidence 588888865 56799888887654311 1234677777666543
No 18
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=99.37 E-value=1.2e-12 Score=142.40 Aligned_cols=71 Identities=35% Similarity=0.482 Sum_probs=67.3
Q ss_pred CceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEec
Q 021880 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFC 141 (306)
Q Consensus 71 ~~~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~ 141 (306)
..+++|||+||.+| ||.++|++++++|++.|++.||||||+++.|++++.+++++.++++|+|+|+++.++
T Consensus 101 ~~krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~ikvI~GvE~~~~~d 173 (1213)
T TIGR01405 101 KEKRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGIKIIYGMEANLVDD 173 (1213)
T ss_pred ccceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcCCEEEEEEEEEeecc
Confidence 35789999999999 999999999999999999999999999999999999999999999999999998654
No 19
>PRK08392 hypothetical protein; Provisional
Probab=99.16 E-value=5e-11 Score=107.31 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=54.1
Q ss_pred EceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---ChH----HHHHHHHhCCCeEEEEeEEEEEe
Q 021880 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GIP----EAIETARRFGMKIIPGVEISTIF 140 (306)
Q Consensus 75 ~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~---g~~----~~~~~~~~~~i~~i~GiEis~~~ 140 (306)
+|+|+||.+|||..+|++++++|.+.|++.+|||||..+. .+. ++.++.++.++.+++|+|++...
T Consensus 1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~ 73 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP 73 (215)
T ss_pred CccccCCCCcCCcCCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC
Confidence 5999999999999999999999999999999999998653 222 22333344689999999998754
No 20
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=99.05 E-value=1.5e-09 Score=99.06 Aligned_cols=64 Identities=28% Similarity=0.462 Sum_probs=50.5
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC-hHHHHHHHHhCCCeEEEEeEEEE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG-IPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g-~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
|+++|+|+|| ++||..+++++++.|.+.|++.||||||..... ........ .+|.++.|+|+..
T Consensus 1 ~m~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~--~~i~Il~GiEi~~ 65 (237)
T PRK00912 1 MKFYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL--LGFEIFRGVEIVA 65 (237)
T ss_pred CCceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh--cCCcEEeeEEEec
Confidence 3578999999 489999999999999999999999999986532 22222111 3899999999963
No 21
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=99.01 E-value=6.2e-10 Score=117.91 Aligned_cols=71 Identities=35% Similarity=0.515 Sum_probs=67.9
Q ss_pred ceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEecc
Q 021880 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQ 142 (306)
Q Consensus 72 ~~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~ 142 (306)
..++.||.||.+| ||..++++++++|++.|.++||||||+.+..+++++.++++.|+++|.|+|.+...+.
T Consensus 334 eKRVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~EanlvdD~ 406 (1444)
T COG2176 334 EKRVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVDDG 406 (1444)
T ss_pred cceEEEEeccchhhhcccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhcCceEEEeeeeeeccCC
Confidence 5799999999999 9999999999999999999999999999999999999999999999999999997643
No 22
>PRK07328 histidinol-phosphatase; Provisional
Probab=98.93 E-value=1.8e-09 Score=100.34 Aligned_cols=219 Identities=16% Similarity=0.102 Sum_probs=113.1
Q ss_pred eEEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------C-------hHHHH---HHH-Hh-CCCeE
Q 021880 73 VVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------G-------IPEAI---ETA-RR-FGMKI 130 (306)
Q Consensus 73 ~~~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~t~~---------g-------~~~~~---~~~-~~-~~i~~ 130 (306)
+.+|+|+||.|| ||..++++++++|.++|++.+|||||.... . +.... +.+ ++ .+|.+
T Consensus 2 m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~I 81 (269)
T PRK07328 2 MLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYV 81 (269)
T ss_pred CceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeE
Confidence 568999999999 999999999999999999999999997651 0 12221 112 22 37999
Q ss_pred EEEeEEEEEeccCCC------CCCCCEEEEEEeccCC-CCcchHHHHHHHH--HHhhhHHHHHHHHHHHHhCCCCC--CH
Q 021880 131 IPGVEISTIFCQRGS------ESEEPVHILAYYSSCG-PSKYEELENFLAN--IRDGRFLRAKDMILKLNKLKLPL--KW 199 (306)
Q Consensus 131 i~GiEis~~~~~~~~------~~~~~vHiL~y~~d~~-~~~~~~L~~~l~~--~~~~R~~r~~~~i~~l~~~g~~i--~~ 199 (306)
+.|+|+....+..+. ..+-+.-|.....-.+ +-.+......... ..+.-......+++.++...+++ ..
T Consensus 82 l~GiE~~~~~~~~~~~~~~l~~~~~D~vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 82 RLGIEADYHPGTEEFLERLLEAYPFDYVIGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred EEEEEecccCCcHHHHHHHHHhCCCCeEEEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 999999975321110 0112232333321100 0001111111100 00111112223444444333321 01
Q ss_pred HHHHHHhCCCCC-CCh---hHHHHHHHHcCccccHHHHHHHhhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEe---C-
Q 021880 200 EHVAKIAGKGVA-PGR---LHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLA---H- 271 (306)
Q Consensus 200 e~v~~~~~~~~~-~~~---~hia~aLv~~g~~~~~~~~~~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGiaVLA---H- 271 (306)
++....+.... ... ..+++++.+.|..-.++..- + ..+ ....+|+ .+.+++..+.|+..++. |
T Consensus 162 -d~i~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~--~-r~~----~~~~yp~-~~il~~~~~~g~~itigSDAH~ 232 (269)
T PRK07328 162 -DLIKKFGHRPREDLTELYEEALDVIAAAGLALEVNTAG--L-RKP----VGEIYPS-PALLRACRERGIPVVLGSDAHR 232 (269)
T ss_pred -cHHHHcCCCCchhHHHHHHHHHHHHHHcCCEEEEEchh--h-cCC----CCCCCCC-HHHHHHHHHcCCCEEEeCCCCC
Confidence 11111111000 000 24566666666443222210 0 111 0112344 57999999999876664 4
Q ss_pred CCCCC-ChHHHHHHHHHcCCCEEEEecCCC
Q 021880 272 PWALK-NPAAIIRKLKDVGLHGLEVYRSDG 300 (306)
Q Consensus 272 P~~~~-~~~~li~~l~~~GldGiEv~~~~~ 300 (306)
|.... +-+..++.+.++|+.-+-+|....
T Consensus 233 ~~~vg~~~~~a~~~l~~~G~~~~~~f~~~~ 262 (269)
T PRK07328 233 PEEVGFGFAEALALLKEVGYTETVVFRARK 262 (269)
T ss_pred HHHHhccHHHHHHHHHHcCCcEEEEEcCCc
Confidence 22232 235678888999999998887553
No 23
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=98.91 E-value=2.3e-09 Score=98.20 Aligned_cols=69 Identities=32% Similarity=0.494 Sum_probs=56.5
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---ChH--------HHHHHHHhCCCeEEEEeEEEEEecc
Q 021880 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GIP--------EAIETARRFGMKIIPGVEISTIFCQ 142 (306)
Q Consensus 74 ~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~---g~~--------~~~~~~~~~~i~~i~GiEis~~~~~ 142 (306)
++|+|+||.||||..+|++++++|.+.|++.+|||||-... ... ++..+.+.+.+.++.|+|++.....
T Consensus 2 ~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~~ 81 (237)
T COG1387 2 KIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPDG 81 (237)
T ss_pred CcccccCcccccCCCCHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecCCC
Confidence 57999999999999999999999999999999999998762 111 1233344577999999999987644
No 24
>PRK06361 hypothetical protein; Provisional
Probab=98.89 E-value=5.2e-09 Score=93.61 Aligned_cols=61 Identities=41% Similarity=0.709 Sum_probs=50.4
Q ss_pred eeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHH--------HHHHhCCCeEEEEeEEEEE
Q 021880 79 SHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI--------ETARRFGMKIIPGVEISTI 139 (306)
Q Consensus 79 ~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~--------~~~~~~~i~~i~GiEis~~ 139 (306)
+||.||||..+|++++++|.+.|++.||||||+...++..+. ++.+..++.+++|+|++..
T Consensus 1 ~Ht~~sdg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~ 69 (212)
T PRK06361 1 THTIFSDGELIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHV 69 (212)
T ss_pred CCccccCCCCCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEccc
Confidence 699999999999999999999999999999999876543221 1122358999999999954
No 25
>PRK07945 hypothetical protein; Provisional
Probab=98.85 E-value=4.8e-09 Score=100.75 Aligned_cols=69 Identities=28% Similarity=0.384 Sum_probs=54.8
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--hHHH-------HHHHHh-CCCeEEEEeEEE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPEA-------IETARR-FGMKIIPGVEIS 137 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~----g--~~~~-------~~~~~~-~~i~~i~GiEis 137 (306)
++.+|+|+||.||||..++++++++|.+.|++.+|||||.... + ...+ .++.++ .+|.++.|+|+.
T Consensus 95 ~~~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d 174 (335)
T PRK07945 95 ALRGDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVD 174 (335)
T ss_pred HHhhhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEec
Confidence 4889999999999999999999999999999999999997542 1 1111 111222 369999999999
Q ss_pred EEe
Q 021880 138 TIF 140 (306)
Q Consensus 138 ~~~ 140 (306)
...
T Consensus 175 ~~~ 177 (335)
T PRK07945 175 ILD 177 (335)
T ss_pred ccC
Confidence 864
No 26
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=98.73 E-value=1.7e-08 Score=93.08 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=51.1
Q ss_pred EceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----C----------hHH----HHHHHHh--CCCeEEE
Q 021880 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS-----G----------IPE----AIETARR--FGMKIIP 132 (306)
Q Consensus 75 ~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~t~~-----g----------~~~----~~~~~~~--~~i~~i~ 132 (306)
.|+|+||.|| ||..++++++++|+++|++.+|||||..+. . ++. +.++.++ .+|.++.
T Consensus 1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~ 80 (253)
T TIGR01856 1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILI 80 (253)
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3899999999 999999999999999999999999997631 0 111 1122223 2799999
Q ss_pred EeEEEEE
Q 021880 133 GVEISTI 139 (306)
Q Consensus 133 GiEis~~ 139 (306)
|+|+...
T Consensus 81 GiE~~~~ 87 (253)
T TIGR01856 81 GLEVDYI 87 (253)
T ss_pred EEEeccc
Confidence 9999865
No 27
>PRK08123 histidinol-phosphatase; Reviewed
Probab=98.70 E-value=4.5e-08 Score=91.11 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=51.8
Q ss_pred eEEceeeeCCCC-CCC-CCHHHHHHHHHHcCCcEEEEecCCCCCC-----------------hHH----HHHHHHh--CC
Q 021880 73 VVFELHSHSNFS-DGY-LSPSKLVERAHCNGVKVLALTDHDTMSG-----------------IPE----AIETARR--FG 127 (306)
Q Consensus 73 ~~~dlH~HT~~S-DG~-~sp~eli~~A~~~Gl~~iaITDH~t~~g-----------------~~~----~~~~~~~--~~ 127 (306)
+++|+|+||.+| ||. -++++++++|.+.|++.+|||||..... +.. +.++.++ .+
T Consensus 2 m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ky~~~ 81 (270)
T PRK08123 2 MKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAIEQLERYLKELNELKKKYAGQ 81 (270)
T ss_pred CccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCCccccCCcccCcccccCHHHHHHHHHHHHHHHHHccCC
Confidence 467999999999 775 6899999999999999999999976421 111 1122223 26
Q ss_pred CeEEEEeEEEEEe
Q 021880 128 MKIIPGVEISTIF 140 (306)
Q Consensus 128 i~~i~GiEis~~~ 140 (306)
|.++.|+|+....
T Consensus 82 i~i~~GiE~~~~~ 94 (270)
T PRK08123 82 IDIRIGLEVDYIE 94 (270)
T ss_pred CeEEEEEEeeccC
Confidence 9999999998643
No 28
>PRK08609 hypothetical protein; Provisional
Probab=98.66 E-value=6.1e-08 Score=99.24 Aligned_cols=71 Identities=25% Similarity=0.418 Sum_probs=55.4
Q ss_pred CCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--hHHH-------HHHHHh-CCCeEEEEeE
Q 021880 70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPEA-------IETARR-FGMKIIPGVE 135 (306)
Q Consensus 70 ~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~----g--~~~~-------~~~~~~-~~i~~i~GiE 135 (306)
...+++|+||||.+|||..+++++++.|.+.|++.++||||.... + ...+ .++.++ .++.++.|+|
T Consensus 331 ~~d~~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiE 410 (570)
T PRK08609 331 LSDIQGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIE 410 (570)
T ss_pred hHhhcCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 344789999999999999999999999999999999999997431 1 1121 121122 3799999999
Q ss_pred EEEEe
Q 021880 136 ISTIF 140 (306)
Q Consensus 136 is~~~ 140 (306)
+....
T Consensus 411 v~i~~ 415 (570)
T PRK08609 411 MDILP 415 (570)
T ss_pred EeecC
Confidence 99864
No 29
>PRK05588 histidinol-phosphatase; Provisional
Probab=98.57 E-value=1.3e-07 Score=87.19 Aligned_cols=65 Identities=20% Similarity=0.481 Sum_probs=50.8
Q ss_pred EEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------ChHHHHHHHHhC-CCeEEEEeEEEEE
Q 021880 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------GIPEAIETARRF-GMKIIPGVEISTI 139 (306)
Q Consensus 74 ~~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~t~~---------g~~~~~~~~~~~-~i~~i~GiEis~~ 139 (306)
++|+|+||.+| ||..++++++++|.++|++.+ ||||..+. ..+...+..+++ ++.++.|+|+...
T Consensus 1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~~ 76 (255)
T PRK05588 1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGME 76 (255)
T ss_pred CeeecccCCCCCCcccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEeccc
Confidence 37999999999 999999999999999999988 99996432 122333333333 5899999999754
No 30
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=98.48 E-value=6.3e-07 Score=84.31 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=57.1
Q ss_pred ceEEceeeeCCCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHh--CC------CeEEEEeEEEEEe
Q 021880 72 NVVFELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR--FG------MKIIPGVEISTIF 140 (306)
Q Consensus 72 ~~~~dlH~HT~~S---DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~--~~------i~~i~GiEis~~~ 140 (306)
.+.+|||+||.|| -..+..+.+++.|+..|++.|+.-|-..-....+..++..+ .| +.+|+-.|+.
T Consensus 2 ~~~aDLHiHs~ys~a~S~~m~~~~Ia~~A~~KGl~lvGtgD~~hP~w~e~ik~~~e~~e~g~~e~~~~~fi~t~evE--- 78 (403)
T COG1379 2 QVNADLHIHSHYSGATSKLMVLPNIAEYAKLKGLDLVGTGDCLHPEWLEEIKKSIESDEDGTFEVKGVRFILTAEVE--- 78 (403)
T ss_pred ccccceeeeeccccccccccchHHHHhhhhhcccceecccccCChHHHHHHHHHhhhccccccccceeEEEEEEeec---
Confidence 3568999999999 56799999999999999999999998765555555554433 12 2344444443
Q ss_pred ccCCCCCCCCEEEEEEec
Q 021880 141 CQRGSESEEPVHILAYYS 158 (306)
Q Consensus 141 ~~~~~~~~~~vHiL~y~~ 158 (306)
....||.|.+..
T Consensus 79 ------d~~rVHhLlilP 90 (403)
T COG1379 79 ------DSRRVHHLLILP 90 (403)
T ss_pred ------cCCceeEEEEcC
Confidence 456799999974
No 31
>PRK07329 hypothetical protein; Provisional
Probab=98.17 E-value=2.3e-06 Score=78.70 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=46.7
Q ss_pred EceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCC-----------CChHHHH----HHHHhCCCeEEEEeEEEE
Q 021880 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTM-----------SGIPEAI----ETARRFGMKIIPGVEIST 138 (306)
Q Consensus 75 ~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~t~-----------~g~~~~~----~~~~~~~i~~i~GiEis~ 138 (306)
.|+|+||.|| ||..++++++++|. +.|+||||..+ ..+.+.. ++.++++..++.|+|+..
T Consensus 2 ~D~H~Ht~~s~d~~~~~ee~~~~A~----~~i~~TdH~~~~~~~~~~~~~~~~~~~Y~~ei~~lk~ky~~~I~~GlE~~~ 77 (246)
T PRK07329 2 RDQHLHTHFSFDSDAKFEDYLTHFD----GEIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIGY 77 (246)
T ss_pred cccccCCCCCCCCcchHHHHHHHhc----cCeEEecccCCCCCcccccccccCHHHHHHHHHHHHHHhhhhceEEEEeCc
Confidence 5999999999 99999999999995 79999999643 1123222 222345678999999986
Q ss_pred E
Q 021880 139 I 139 (306)
Q Consensus 139 ~ 139 (306)
.
T Consensus 78 ~ 78 (246)
T PRK07329 78 F 78 (246)
T ss_pred c
Confidence 4
No 32
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=8e-05 Score=66.90 Aligned_cols=67 Identities=27% Similarity=0.361 Sum_probs=50.3
Q ss_pred EEceeeeCCCC--CCCCCHHH---HHHHHHHcCCcEEEEecCCCCCCh---HH--------HHHHHHh--CCCeEEEEeE
Q 021880 74 VFELHSHSNFS--DGYLSPSK---LVERAHCNGVKVLALTDHDTMSGI---PE--------AIETARR--FGMKIIPGVE 135 (306)
Q Consensus 74 ~~dlH~HT~~S--DG~~sp~e---li~~A~~~Gl~~iaITDH~t~~g~---~~--------~~~~~~~--~~i~~i~GiE 135 (306)
++|.|||-... ||.-+.++ |+++|.+.|+..|..|-|+.-.-+ .+ ..+..++ .++.++||-|
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQE 80 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQE 80 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCce
Confidence 47999999886 99999887 788899999999999999753322 11 1222222 5789999999
Q ss_pred EEEEe
Q 021880 136 ISTIF 140 (306)
Q Consensus 136 is~~~ 140 (306)
|....
T Consensus 81 IrIt~ 85 (254)
T COG4464 81 IRITG 85 (254)
T ss_pred EEEch
Confidence 98754
No 33
>PRK06740 histidinol-phosphatase; Validated
Probab=97.44 E-value=0.00021 Score=68.62 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
||..++++++++|.++|++.++||||-
T Consensus 58 ~~~~~~e~yv~~Ai~~G~~~ig~SdH~ 84 (331)
T PRK06740 58 YTTKWIDLYLEEALRKGIKEVGIVDHL 84 (331)
T ss_pred CccchHHHHHHHHHHCCCcEEEECCCC
Confidence 788899999999999999999999996
No 34
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=94.20 E-value=0.041 Score=56.48 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=35.5
Q ss_pred ceEEceeeeCCCC-CC-----CCCHHHHHHHHHH--------------cCCcEEEEecCCCCCC
Q 021880 72 NVVFELHSHSNFS-DG-----YLSPSKLVERAHC--------------NGVKVLALTDHDTMSG 115 (306)
Q Consensus 72 ~~~~dlH~HT~~S-DG-----~~sp~eli~~A~~--------------~Gl~~iaITDH~t~~g 115 (306)
-++.|+|+||.|| |. ..+|++-.+.|+- +=|++++||||--.-|
T Consensus 6 ~yfGDlHlHT~~S~DA~~~G~~~~P~dAYRfAkGe~v~~~~G~~vqL~rPLDF~aVTDHaE~lG 69 (592)
T PF12228_consen 6 PYFGDLHLHTSYSFDAYAFGNRLTPDDAYRFAKGEPVTHPSGQPVQLDRPLDFLAVTDHAEFLG 69 (592)
T ss_pred ccccccccccccccchhhccCCCCHHHHHHHhcCCcccCCCCCEeeeCCCcceeEEcccHhhhh
Confidence 3889999999999 53 6899999988863 3478999999965443
No 35
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=88.95 E-value=0.84 Score=40.89 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=43.8
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 74 ~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
.+|.|||...+....+++++++.+.+.|++.+.+.--+ ..++..+.+.+++.+ .+++++=+..
T Consensus 1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~~-~i~~~~GihP 63 (252)
T TIGR00010 1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTD-LEDFLRALELAEKYP-NVYAAVGVHP 63 (252)
T ss_pred CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHHCC-CEEEEEEeCc
Confidence 36999997544322379999999999999988754322 234555666677777 7777666654
No 36
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=85.50 E-value=2.2 Score=39.77 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=46.3
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis 137 (306)
++.+|-|||-.+..=..+.++++++|.+.|+..+.++=- +......+.++++++. .+++.+=+-
T Consensus 1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~-~~~~~~~~~~la~~y~-~v~~~~G~H 64 (256)
T COG0084 1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGT-DLEDFKRALELAEKYP-NVYAAVGVH 64 (256)
T ss_pred CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEeec-CHHHHHHHHHHHHhCC-CeEEEEeeC
Confidence 467899999998766778999999999999888876532 2334456677777765 445544443
No 37
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=84.11 E-value=2.3 Score=41.62 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 250 EPLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 250 ~~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+.+..+.++||+.||.++ |+|+++
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~Gr 108 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAGR 108 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCcc
Confidence 3567899999999999877 899994
No 38
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=83.31 E-value=2.4 Score=38.90 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=43.6
Q ss_pred EceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 75 ~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
+|.|||....+-..+..++++.|.+.|+..++++-.+. ..+....+.+++.+..+++++=|-.
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~GiHP 63 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDP-EDWERVLELASQYPDRVYPALGIHP 63 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSH-HHHHHHHHHHHHTTTEEEEEE---G
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCH-HHhHHHHHHHhcCCCeEEEEecCCc
Confidence 68999998743345688888999999999997665443 3455566667777777777776655
No 39
>PRK10812 putative DNAse; Provisional
Probab=82.87 E-value=2.9 Score=38.85 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=37.3
Q ss_pred eEEceeeeCC---CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCC
Q 021880 73 VVFELHSHSN---FSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (306)
Q Consensus 73 ~~~dlH~HT~---~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~ 127 (306)
..+|-|||-. +++-...+++++++|.+.|+..+.++=-+ ...+.++.++++++.
T Consensus 2 ~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~~-~~~~~~~~~l~~~~~ 58 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATT-LPGYRHMRDLVGERD 58 (265)
T ss_pred ceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHhhCC
Confidence 4689999976 33323478999999999999877654222 334556667776653
No 40
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=82.16 E-value=3.2 Score=38.44 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=38.0
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCC
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~ 127 (306)
..+|.|||-.++.-..+.++++++|++.|+..+.++=- +...+.++.+.++++.
T Consensus 4 ~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~ 57 (258)
T PRK11449 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAERYQ 57 (258)
T ss_pred eEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeC-CHHHHHHHHHHHHhCC
Confidence 47899999876533347889999999999988866422 2344556666666653
No 41
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=80.56 E-value=4.3 Score=39.21 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWAL 275 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~~ 275 (306)
+.+.+++++||+.|+.++ |.|+++.
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~~ 103 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGRY 103 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCCC
Confidence 457889999999999876 8898763
No 42
>PRK10425 DNase TatD; Provisional
Probab=79.76 E-value=4 Score=37.80 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=40.9
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEE
Q 021880 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (306)
Q Consensus 74 ~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis 137 (306)
.+|-|||-.+..-.-..++++++|++.|+..+.++--+ ...+.++.+.++++.. +++++=|-
T Consensus 1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~~-v~~~~GiH 62 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYPS-CWSTAGVH 62 (258)
T ss_pred CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCCC-EEEEEEeC
Confidence 36999997654334578999999999998777655333 3445667777766542 44444443
No 43
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.12 E-value=4.9 Score=36.77 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=46.4
Q ss_pred ceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEec--CCCCCChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTD--HDTMSGIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 76 dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITD--H~t~~g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
-+|+++.+++-...|+++++.+.+.|.+.+.|=| ..+..-..++.+.+++.|+.+ |++++.
T Consensus 76 Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~--~~~v~p 138 (244)
T PRK13125 76 PIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKP--VFFTSP 138 (244)
T ss_pred CEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCE--EEEECC
Confidence 4588999998778999999999999999999944 122234456777888899875 556655
No 44
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=77.65 E-value=6.1 Score=35.18 Aligned_cols=62 Identities=19% Similarity=0.350 Sum_probs=40.7
Q ss_pred EceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 75 ~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
+|.|||.....+..+++++++.+.+.|+..+.+.--. ......+.+.+++. ..+++++-+..
T Consensus 2 ~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~-~~~~~~~~~la~~~-~~i~~~~G~hP 63 (251)
T cd01310 2 IDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTD-LKSSKRALELAKKY-DNVYAAVGLHP 63 (251)
T ss_pred EEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHhC-CCeEEEEeeCc
Confidence 6999998654444688999999999999888776322 11234445555555 45666655543
No 45
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=76.49 E-value=5 Score=38.71 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.++.++++||+.|+.++ |.|+++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCC
Confidence 457889999999999876 789876
No 46
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=76.33 E-value=9.1 Score=36.68 Aligned_cols=47 Identities=11% Similarity=0.311 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
|..+++++.|++.||.+++-|+.. +...+++.++++|+|++-+....
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG--~~~~~l~~~~e~g~dvl~~d~~~ 244 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCG--AAASLVPSMAEMGVDSWNVVMTA 244 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCC--CcHHHHHHHHHcCCCEEEecCCC
Confidence 456889999999988888889864 33468999999999999886654
No 47
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=74.76 E-value=7.2 Score=37.99 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.++.++++||+.|+.++ |.|+++
T Consensus 79 ~~~~~lad~vH~~Ga~i~~QL~H~Gr 104 (362)
T PRK10605 79 AAWKKITAGVHAEGGHIAVQLWHTGR 104 (362)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCC
Confidence 346778888888888766 677654
No 48
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.02 E-value=8.3 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.+..+++++|+.|+.++ |.|+++
T Consensus 78 ~~~~~l~d~vh~~Ga~i~~QL~H~Gr 103 (361)
T cd04747 78 AGWKKVVDEVHAAGGKIAPQLWHVGA 103 (361)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCC
Confidence 456788999999999876 788775
No 49
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.22 E-value=7.3 Score=37.67 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.++.++++||+.|+.++ |.|+++
T Consensus 78 ~~~~~l~~~vh~~G~~i~~QL~h~G~ 103 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAILQIFHAGR 103 (353)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 567899999999999876 888775
No 50
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=71.23 E-value=8.7 Score=37.64 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHP 272 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP 272 (306)
+.++.++++||+.|+.++ |.|.
T Consensus 83 ~~~k~l~davh~~G~~i~~QL~H~ 106 (382)
T cd02931 83 RTAKEMTERVHAYGTKIFLQLTAG 106 (382)
T ss_pred HHHHHHHHHHHHcCCEEEEEccCc
Confidence 346788899999999876 6784
No 51
>PLN02411 12-oxophytodienoate reductase
Probab=70.85 E-value=10 Score=37.33 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=11.7
Q ss_pred HHHHcCCCEEEEecC
Q 021880 284 KLKDVGLHGLEVYRS 298 (306)
Q Consensus 284 ~l~~~GldGiEv~~~ 298 (306)
.++++|+||||+.-.
T Consensus 173 rA~~AGFDGVEIH~A 187 (391)
T PLN02411 173 NAIRAGFDGIEIHGA 187 (391)
T ss_pred HHHHcCCCEEEEccc
Confidence 456899999999643
No 52
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=70.80 E-value=10 Score=36.61 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+..+++++|+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 78 GFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHhcCCeEEEeccCCCc
Confidence 46778999999998766 788775
No 53
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.77 E-value=6.1 Score=37.32 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.+++++++||+.|+.++ |.|+++
T Consensus 77 ~~~~~~~~~vh~~g~~~~~Ql~h~G~ 102 (327)
T cd02803 77 PGLRKLTEAVHAHGAKIFAQLAHAGR 102 (327)
T ss_pred HHHHHHHHHHHhCCCHhhHHhhCCCc
Confidence 346778888888888765 677664
No 54
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=70.15 E-value=50 Score=32.46 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.3
Q ss_pred eEEceeeeCCCC---CCC--CCHHHHHHHHHHcCCcEEE
Q 021880 73 VVFELHSHSNFS---DGY--LSPSKLVERAHCNGVKVLA 106 (306)
Q Consensus 73 ~~~dlH~HT~~S---DG~--~sp~eli~~A~~~Gl~~ia 106 (306)
-++|.|+|.... ++. .+|+--+..+.+.|+..+.
T Consensus 57 GlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~ 95 (389)
T TIGR01975 57 GFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVV 95 (389)
T ss_pred CEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEe
Confidence 488999998753 444 6788777888999998876
No 55
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=65.87 E-value=11 Score=36.28 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.+..++++||+.|+.++ |.|+++
T Consensus 80 ~~~k~l~~~vh~~Ga~i~~QL~H~G~ 105 (341)
T PF00724_consen 80 PGLKKLADAVHAHGAKIIAQLWHAGR 105 (341)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEE--GG
T ss_pred HHHHHHHHHHHhcCccceeecccccc
Confidence 357889999999999988 688763
No 56
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.79 E-value=16 Score=35.06 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.++.++++||+.|+.++ |.|.++
T Consensus 82 ~~~~~l~~~vh~~G~~~~~Ql~h~G~ 107 (338)
T cd04733 82 EAFREWAAAAKANGALIWAQLNHPGR 107 (338)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCc
Confidence 456788889999988866 577553
No 57
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=65.03 E-value=16 Score=35.62 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+..++++||+.|+.++ |.|+++
T Consensus 84 ~~~~l~~~vh~~G~~i~~QL~H~G~ 108 (370)
T cd02929 84 NLAAMTDAVHKHGALAGIELWHGGA 108 (370)
T ss_pred HHHHHHHHHHHCCCeEEEecccCCC
Confidence 46678888888888765 677764
No 58
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=64.87 E-value=16 Score=35.22 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+..++++||+.|+.++ |.|+++
T Consensus 78 ~lr~la~~vh~~ga~~~~QL~H~G~ 102 (338)
T cd02933 78 GWKKVTDAVHAKGGKIFLQLWHVGR 102 (338)
T ss_pred HHHHHHHHHHhcCCeEEEEcccCcc
Confidence 46778888888888655 777653
No 59
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=64.77 E-value=15 Score=35.12 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.++.++++||+.|+.++ |.|+++
T Consensus 77 ~~~~~l~~~vh~~G~~~~~QL~H~G~ 102 (336)
T cd02932 77 EALKRIVDFIHSQGAKIGIQLAHAGR 102 (336)
T ss_pred HHHHHHHHHHHhcCCcEEEEccCCCc
Confidence 346778888888888766 677664
No 60
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=64.63 E-value=16 Score=36.08 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=42.5
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CCC---hHHHHHHHHhCCCeEEEEe
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MSG---IPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t--~~g---~~~~~~~~~~~~i~~i~Gi 134 (306)
-++|.|+|...|- .+|+++.+.|...|+..+..--|.. +.+ +..+.+.+++..+.++..+
T Consensus 10 G~ID~H~Hi~~~~--~~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 10 GFIDAHLHIESSM--LTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CEEEccCCcCCCC--CChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 4789999987652 5889999999999999986644542 233 4445565666666666666
No 61
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=62.60 E-value=25 Score=29.50 Aligned_cols=52 Identities=8% Similarity=0.020 Sum_probs=38.1
Q ss_pred CCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC--hHHHHHHHHhCCC
Q 021880 70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGM 128 (306)
Q Consensus 70 ~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g--~~~~~~~~~~~~i 128 (306)
.++..+||-.. .+|+++++.|++.+.+.++++-..+..- ..+..+.+++.++
T Consensus 28 ~GfeVi~LG~~-------v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 28 AGFNVVNLGVL-------SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCCEEEECCCC-------CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 34455555444 5999999999999999999998876543 4556666666664
No 62
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=60.01 E-value=28 Score=34.27 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=42.2
Q ss_pred eEEceeeeCCCCC--C--------------------CCCHHHHHHHHH-------HcCCcEEEEecCCCCCChHHHHHHH
Q 021880 73 VVFELHSHSNFSD--G--------------------YLSPSKLVERAH-------CNGVKVLALTDHDTMSGIPEAIETA 123 (306)
Q Consensus 73 ~~~dlH~HT~~SD--G--------------------~~sp~eli~~A~-------~~Gl~~iaITDH~t~~g~~~~~~~~ 123 (306)
-++|.|+|...+. | .++|+++...|. ..|+..+ -||.+........+.+
T Consensus 57 GlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv--~d~~~~~~~~~~~~a~ 134 (445)
T PRK07228 57 GLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTI--VDMESVHHTDSAFEAA 134 (445)
T ss_pred CEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEE--EccccccChHHHHHHH
Confidence 4899999987641 1 145566655555 7888555 4887665555666667
Q ss_pred HhCCCeEEEEeEEE
Q 021880 124 RRFGMKIIPGVEIS 137 (306)
Q Consensus 124 ~~~~i~~i~GiEis 137 (306)
.+.|+..+.|.++.
T Consensus 135 ~~~g~r~~~~~~~~ 148 (445)
T PRK07228 135 GESGIRAVLGKVMM 148 (445)
T ss_pred HHcCCeEEEeccee
Confidence 77888887776654
No 63
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=59.11 E-value=22 Score=29.59 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCC--ChHHHHHHHHhC
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF 126 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~ 126 (306)
+..+|+++++.|.+.+.+.++|+-.++.. ..++..+.+++.
T Consensus 38 ~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 38 LFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 34699999999999999999998776432 334445555554
No 64
>PRK09358 adenosine deaminase; Provisional
Probab=58.70 E-value=9.2 Score=36.42 Aligned_cols=29 Identities=41% Similarity=0.603 Sum_probs=26.1
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcE
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~ 104 (306)
.+++||+|- ||+++|+.+.+.|+++|++.
T Consensus 11 pK~eLH~Hl---~Gs~~~~~l~~l~~~~~~~~ 39 (340)
T PRK09358 11 PKAELHLHL---DGSLRPETILELARRNGIAL 39 (340)
T ss_pred CceeEEecc---cCCCCHHHHHHHHHHcCCCC
Confidence 489999997 89999999999999998764
No 65
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=57.50 E-value=47 Score=30.07 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=42.5
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC--hHHHHHHHHhCCCeEEEEeEEEEE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPGVEISTI 139 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g--~~~~~~~~~~~~i~~i~GiEis~~ 139 (306)
...+|+|.|+ .+|+..++.+.+.|.+.+.| |-.... ..++.+.+++.|. ..|+.+.+.
T Consensus 65 ~~~lDvHLm~------~~p~~~i~~~~~~Gad~itv--H~ea~~~~~~~~l~~ik~~G~--~~gval~p~ 124 (228)
T PTZ00170 65 NTFLDCHLMV------SNPEKWVDDFAKAGASQFTF--HIEATEDDPKAVARKIREAGM--KVGVAIKPK 124 (228)
T ss_pred CCCEEEEECC------CCHHHHHHHHHHcCCCEEEE--eccCCchHHHHHHHHHHHCCC--eEEEEECCC
Confidence 4668999995 68999999999999998877 544322 4566677777775 457666643
No 66
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=56.57 E-value=11 Score=29.50 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=25.7
Q ss_pred ceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 76 dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
-.|.|+.+|- -.-|.+-.|+..|++.+ +|||.-
T Consensus 53 IVHgH~a~S~---l~hE~i~hA~~mGlktV-fTDHSL 85 (90)
T PF08288_consen 53 IVHGHQAFST---LCHEAILHARTMGLKTV-FTDHSL 85 (90)
T ss_pred EEEeehhhhH---HHHHHHHHHHhCCCcEE-eecccc
Confidence 4699998872 23467888999999987 999963
No 67
>PTZ00124 adenosine deaminase; Provisional
Probab=53.84 E-value=12 Score=36.59 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=25.8
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcE
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~ 104 (306)
.+++||+|- ||+++|+.+.+.|++.|++.
T Consensus 36 PKvELH~HL---dGsi~~~tl~~La~~~~~~~ 64 (362)
T PTZ00124 36 PKCELHCHL---DLCFSVDFFLSCIRKYNLQP 64 (362)
T ss_pred CceeEeecc---cCCCCHHHHHHHHHHcCCCC
Confidence 378999997 89999999999999999754
No 68
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=53.42 E-value=52 Score=27.40 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC--ChHHHHHHHHhCCC
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGM 128 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~~i 128 (306)
.+|+++++.|.+.+.+.|+++-..+.. ...+..+.+++.++
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCC
Confidence 589999999999999999999877544 34555566666544
No 69
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=53.02 E-value=47 Score=33.17 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCcEEEEecC-CCCCChHHHHHHHHhCCCeEEEEeEEE
Q 021880 90 PSKLVERAHCNGVKVLALTDH-DTMSGIPEAIETARRFGMKIIPGVEIS 137 (306)
Q Consensus 90 p~eli~~A~~~Gl~~iaITDH-~t~~g~~~~~~~~~~~~i~~i~GiEis 137 (306)
++..++.|.++|++.+=|-|- |...+...+.+.+++.|..+.--+-.+
T Consensus 100 Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT 148 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYT 148 (472)
T ss_pred HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEec
Confidence 677899999999999999875 334556667777788877554433333
No 70
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=51.83 E-value=6 Score=39.18 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=5.6
Q ss_pred CCHHHHhHHHh
Q 021880 29 MTAEQSLAFNS 39 (306)
Q Consensus 29 ~~~~~~~~~~~ 39 (306)
||++|.+.=++
T Consensus 27 mTp~E~~EEk~ 37 (396)
T PF09692_consen 27 MTPAEAEEEKN 37 (396)
T ss_pred CCHHHHHHHHh
Confidence 55666554333
No 71
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=51.57 E-value=86 Score=31.85 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC-CCChHHHHHHHHhCCCeEEE
Q 021880 90 PSKLVERAHCNGVKVLALTDHDT-MSGIPEAIETARRFGMKIIP 132 (306)
Q Consensus 90 p~eli~~A~~~Gl~~iaITDH~t-~~g~~~~~~~~~~~~i~~i~ 132 (306)
.+..++.|.++|++.+=|.||-+ +.....+.+++++.|..+..
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~ 150 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQL 150 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34579999999999999999965 34455667778888877553
No 72
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.85 E-value=30 Score=33.69 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHcCCEEE-----EeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 252 LAEVAVQLIHRTGGLAV-----LAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV-----LAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.++++|+..|++|-... +.|+.....-...++.|.+.|+|+|++.-|
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dp 101 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADP 101 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCH
Confidence 47899999999998333 445554333357899999999999999755
No 73
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=47.16 E-value=18 Score=31.74 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=37.9
Q ss_pred EEceeeeCCCC--CC------------------CCCHHHHHHHHHHcCCcEEEEecCCCCC-----ChHHHHHHHHhC-C
Q 021880 74 VFELHSHSNFS--DG------------------YLSPSKLVERAHCNGVKVLALTDHDTMS-----GIPEAIETARRF-G 127 (306)
Q Consensus 74 ~~dlH~HT~~S--DG------------------~~sp~eli~~A~~~Gl~~iaITDH~t~~-----g~~~~~~~~~~~-~ 127 (306)
++|.|+|...+ .+ ..+....++.+.+.|+..+...-+.... ....+.+.+++. +
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 36999998765 22 2235677888999998877653332221 234455666665 5
Q ss_pred CeEEEEeEEE
Q 021880 128 MKIIPGVEIS 137 (306)
Q Consensus 128 i~~i~GiEis 137 (306)
+.++.+..+.
T Consensus 81 ~~~~~~~~~~ 90 (275)
T cd01292 81 IRVVLGLGIP 90 (275)
T ss_pred eeeEEeccCC
Confidence 5555544433
No 74
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=46.00 E-value=20 Score=33.84 Aligned_cols=28 Identities=43% Similarity=0.526 Sum_probs=24.2
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCc
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~ 103 (306)
.++|||+|- +|+++++.+++.|++.++.
T Consensus 3 pK~eLH~HL---~Gsi~~~~l~ela~~~~~~ 30 (331)
T PF00962_consen 3 PKAELHIHL---DGSISPETLLELAKKNNIC 30 (331)
T ss_dssp -EEEEEEEG---GGSS-HHHHHHHHHHCTCC
T ss_pred CEEEeeeCC---ccCCCHHHHHHHHHhCCCC
Confidence 579999997 8999999999999999976
No 75
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=45.98 E-value=32 Score=30.68 Aligned_cols=61 Identities=31% Similarity=0.506 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe----EEEEEeccCCCCCCCCEEEEEEec
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV----EISTIFCQRGSESEEPVHILAYYS 158 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi----Eis~~~~~~~~~~~~~vHiL~y~~ 158 (306)
|+..=.+-+++|.+.|.+++ +|-+- .++..++|++.++.++||+ |+...+ .....++-+|.
T Consensus 65 GTV~~~e~a~~a~~aGA~Fi-vSP~~----~~~v~~~~~~~~i~~iPG~~TptEi~~A~-------~~G~~~vK~FP 129 (196)
T PF01081_consen 65 GTVLTAEQAEAAIAAGAQFI-VSPGF----DPEVIEYAREYGIPYIPGVMTPTEIMQAL-------EAGADIVKLFP 129 (196)
T ss_dssp ES--SHHHHHHHHHHT-SEE-EESS------HHHHHHHHHHTSEEEEEESSHHHHHHHH-------HTT-SEEEETT
T ss_pred EeccCHHHHHHHHHcCCCEE-ECCCC----CHHHHHHHHHcCCcccCCcCCHHHHHHHH-------HCCCCEEEEec
Confidence 45555667899999999988 55543 3778899999999999998 333222 22346777773
No 76
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=42.74 E-value=62 Score=25.72 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i 131 (306)
+...-+.++.|+++|.+.++||+-. ++.+++.+.++.++
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~------~l~~~~~~~~~~~~ 94 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG------KLLEMAREHGVPVI 94 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc------hHHHHHHHcCCcEE
Confidence 3456678999999999999999632 24455655554443
No 77
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=42.62 E-value=47 Score=31.90 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCE-EEEeCCCCCC
Q 021880 254 EVAVQLIHRTGGL-AVLAHPWALK 276 (306)
Q Consensus 254 eevI~~I~~aGGi-aVLAHP~~~~ 276 (306)
.+.+++|.++||+ .|-++|...+
T Consensus 205 D~qlkaI~~~gGvIgv~~~~~fl~ 228 (313)
T COG2355 205 DEQLKAIAETGGVIGVNFIPAFLR 228 (313)
T ss_pred HHHHHHHHhcCCEEEEEeehhhcc
Confidence 6789999999996 6789987554
No 78
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=41.80 E-value=25 Score=33.20 Aligned_cols=29 Identities=38% Similarity=0.572 Sum_probs=25.8
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEE
Q 021880 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVL 105 (306)
Q Consensus 74 ~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~i 105 (306)
+++||+|- ||+++++.+.+.+.+.|++..
T Consensus 3 K~eLH~Hl---~Gsi~~~~l~~l~~~~~~~~~ 31 (324)
T TIGR01430 3 KAELHLHL---EGSIRPETLLELAQKNGIPLP 31 (324)
T ss_pred ceeeEecc---cCCCCHHHHHHHHHHcCCCCC
Confidence 68999997 789999999999999998753
No 79
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=40.06 E-value=61 Score=22.05 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=19.2
Q ss_pred CCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 24 GGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++..+|.+|...|..++.- +.+|
T Consensus 2 r~r~~~t~~q~~~L~~~f~~---~~~p 25 (57)
T PF00046_consen 2 RKRTRFTKEQLKVLEEYFQE---NPYP 25 (57)
T ss_dssp SSSSSSSHHHHHHHHHHHHH---SSSC
T ss_pred cCCCCCCHHHHHHHHHHHHH---hccc
Confidence 46788999999999999974 4555
No 80
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=39.83 E-value=59 Score=29.01 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|+.| +.|.++- .. ..+.+..+.++|+|||..-+|.
T Consensus 191 ~~~v~~~~~~G-~~v~~wT--vn-~~~~~~~l~~~GVdgi~TD~p~ 232 (233)
T cd08582 191 PAFIKALRDAG-LKLNVWT--VD-DAEDAKRLIELGVDSITTNRPG 232 (233)
T ss_pred HHHHHHHHHCC-CEEEEEe--CC-CHHHHHHHHHCCCCEEEcCCCC
Confidence 47889999995 7777753 33 3467889999999999988875
No 81
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=39.37 E-value=61 Score=28.61 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.+|++| +.|.+. ...+ .+.+..+.++|+|||..-+|
T Consensus 189 ~~~v~~~~~~g-~~v~~w--Tvn~-~~~~~~~~~~gVdgiiTD~p 229 (229)
T cd08562 189 EEQVKALKDAG-YKLLVY--TVND-PARAAELLEWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHHCC-CEEEEE--eCCC-HHHHHHHHHCCCCEEEcCCC
Confidence 57899999985 777765 3343 46789999999999987665
No 82
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=38.30 E-value=1.2e+02 Score=25.33 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC--ChHHHHHHHHhC
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF 126 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~ 126 (306)
.+++++++.|.+.+.+.++++=-.+.. ...++.+.+++.
T Consensus 41 vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 589999999999999999998765522 223344444443
No 83
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=38.29 E-value=1e+02 Score=29.63 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=38.7
Q ss_pred eEEceeeeCCC--C-C--CCCCHHHHHHHHHHcCCcEEEEecCCCCCCh-------HHHHHHHHhCCCeEEEE
Q 021880 73 VVFELHSHSNF--S-D--GYLSPSKLVERAHCNGVKVLALTDHDTMSGI-------PEAIETARRFGMKIIPG 133 (306)
Q Consensus 73 ~~~dlH~HT~~--S-D--G~~sp~eli~~A~~~Gl~~iaITDH~t~~g~-------~~~~~~~~~~~i~~i~G 133 (306)
-.+|.|+|... . + ...+|+..+..|...|...+. |.-...++ .+..+.+.+.|+..+.+
T Consensus 57 G~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvv--d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~ 127 (388)
T PRK10657 57 GFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVV--GLLGTDGITRSMESLLAKARALEEEGISAYMY 127 (388)
T ss_pred cceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEE--CCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEE
Confidence 48899999863 1 2 346888899999999998876 55422222 22233344678887744
No 84
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=38.27 E-value=58 Score=24.54 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCChHHHHH
Q 021880 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIE 121 (306)
Q Consensus 90 p~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~ 121 (306)
+.+.+......|++.+-|-|+++..+..++.+
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~ 38 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILR 38 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHH
Confidence 56778888999999999999999999877654
No 85
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=37.53 E-value=72 Score=34.21 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHcC-CEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTG-GLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aG-GiaV--LAHP~~ 274 (306)
.++.++++||+.| +.++ |.|+++
T Consensus 476 ~~~~~~~~vh~~gg~~i~~QL~h~Gr 501 (765)
T PRK08255 476 AWKRIVDFVHANSDAKIGIQLGHSGR 501 (765)
T ss_pred HHHHHHHHHHhcCCceEEEEccCCcc
Confidence 4678899999994 6654 788765
No 86
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=37.31 E-value=32 Score=32.37 Aligned_cols=29 Identities=41% Similarity=0.602 Sum_probs=25.5
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcE
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~ 104 (306)
.+++||+|- +|+++++-+.+.+.+.|++.
T Consensus 3 pK~elH~Hl---~Gs~~~~~l~~~~~~~~~~~ 31 (325)
T cd01320 3 PKAELHLHL---DGSLRPETILELAKKNGITL 31 (325)
T ss_pred CceEEeecc---cCCCCHHHHHHHHHHhCCCC
Confidence 478999997 78999999999999998764
No 87
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=37.17 E-value=63 Score=28.77 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
++.|+.+|++ |+.|.++ ... ..+.+..+.+.|+|||..-+|
T Consensus 190 ~~~i~~~~~~-g~~v~~W--tvn-~~~~~~~~~~~GVdgi~TD~P 230 (230)
T cd08563 190 EEVVEELKKR-GIPVRLW--TVN-EEEDMKRLKDLGVDGIITNYP 230 (230)
T ss_pred HHHHHHHHHC-CCEEEEE--ecC-CHHHHHHHHHCCCCEEeCCCC
Confidence 5789999998 5777764 333 457889999999999987665
No 88
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=36.84 E-value=54 Score=29.47 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
|+..-.+-++.|.+.|-+++ +|-+- ..+..++|+++++..+||+
T Consensus 65 GTVl~~~~a~~a~~aGA~Fi-vsP~~----~~~v~~~~~~~~i~~iPG~ 108 (204)
T TIGR01182 65 GTVLNPEQLRQAVDAGAQFI-VSPGL----TPELAKHAQDHGIPIIPGV 108 (204)
T ss_pred EeCCCHHHHHHHHHcCCCEE-ECCCC----CHHHHHHHHHcCCcEECCC
Confidence 44444455889999999999 77654 3677888999999999997
No 89
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.83 E-value=78 Score=25.48 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEe
Q 021880 86 GYLSPSKLVERAHCNGVKVLALT 108 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaIT 108 (306)
...+++++++.|.+.+-+.++|+
T Consensus 35 ~~vp~e~~~~~a~~~~~d~V~iS 57 (122)
T cd02071 35 LRQTPEEIVEAAIQEDVDVIGLS 57 (122)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEc
Confidence 45789999999999999999996
No 90
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=36.80 E-value=56 Score=31.48 Aligned_cols=53 Identities=25% Similarity=0.435 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEe-cCCC--------------CC------ChHHHHHHHHhCCCeEEEEeEEE
Q 021880 83 FSDGYLSPSKLVERAHCNGVKVLALT-DHDT--------------MS------GIPEAIETARRFGMKIIPGVEIS 137 (306)
Q Consensus 83 ~SDG~~sp~eli~~A~~~Gl~~iaIT-DH~t--------------~~------g~~~~~~~~~~~~i~~i~GiEis 137 (306)
|.-..+.|++.++.|++.|.+.+.+| -|+. +. =+.++.++|++.||++ |+=.|
T Consensus 86 F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~--G~Y~S 159 (346)
T PF01120_consen 86 FNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKF--GLYYS 159 (346)
T ss_dssp ---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EE--EEEEE
T ss_pred CCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeE--EEEec
Confidence 34467999999999999999999886 3431 11 1457788899998764 55444
No 91
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.57 E-value=77 Score=28.60 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|++| +.|.++- ..+ .+.+..+.+.|+|||.+-+|.
T Consensus 221 ~~~i~~~~~~G-~~v~vwt--vn~-~~~~~~~~~~Gvdgi~TD~P~ 262 (263)
T cd08567 221 KELVDEAHALG-LKVVPWT--VND-PEDMARLIDLGVDGIITDYPD 262 (263)
T ss_pred HHHHHHHHHCC-CEEEEec--CCC-HHHHHHHHHcCCCEEEcCCCC
Confidence 57889999997 7777753 333 467888999999999988874
No 92
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=36.49 E-value=1.1e+02 Score=29.66 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=27.0
Q ss_pred HHHHHcCCcEEEEecCCCCCC--hHHHHHHHHhCCCeEEEEeEE
Q 021880 95 ERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 95 ~~A~~~Gl~~iaITDH~t~~g--~~~~~~~~~~~~i~~i~GiEi 136 (306)
..+.+.|+..+. ||.+... ...+.+.+.+.|++++.|...
T Consensus 97 ~e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 138 (401)
T TIGR02967 97 DELLRNGTTTAL--VFATVHPESVDALFEAALKRGMRMIAGKVL 138 (401)
T ss_pred HHHHhCCCcEEE--eccccCHHHHHHHHHHHHHCCCeEEEeeee
Confidence 467888998765 7765432 244566677889988877654
No 93
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=36.06 E-value=84 Score=26.75 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCE-E-EEeCCCCCCCh-HHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGL-A-VLAHPWALKNP-AAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGi-a-VLAHP~~~~~~-~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.||+|+|- . |+--|+.|... ..+-+.++...+.=|||.=|
T Consensus 54 g~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlS 101 (146)
T COG0757 54 GELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLS 101 (146)
T ss_pred HHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEec
Confidence 4789999999884 2 77889988753 67888899999999999755
No 94
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=35.68 E-value=92 Score=30.68 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEec-CC-C-------------CC------ChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTD-HD-T-------------MS------GIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITD-H~-t-------------~~------g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
-.+.|++.++.|++.|++.+.+|= |+ - +. =+.++.++|++.||+ .|+-.|.
T Consensus 79 ~~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk--~G~Y~S~ 150 (384)
T smart00812 79 EKFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLK--FGLYHSL 150 (384)
T ss_pred hhCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCe--EEEEcCH
Confidence 358999999999999999998874 22 1 11 145677888888876 4555554
No 95
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.84 E-value=61 Score=29.20 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEE
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEi 136 (306)
|+..-.+-++.|.+.|-+++- |-+ -.++..++|++.++.++||+.-
T Consensus 73 GTV~~~~~~~~a~~aGA~Fiv-sP~----~~~~v~~~~~~~~i~~iPG~~T 118 (213)
T PRK06552 73 GTVLDAVTARLAILAGAQFIV-SPS----FNRETAKICNLYQIPYLPGCMT 118 (213)
T ss_pred eeCCCHHHHHHHHHcCCCEEE-CCC----CCHHHHHHHHHcCCCEECCcCC
Confidence 444444556999999999984 433 3477888999999999999863
No 96
>PRK10027 cryptic adenine deaminase; Provisional
Probab=34.76 E-value=90 Score=32.60 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=40.0
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---ChHHHHHHHHhCCCeEEEEeE
Q 021880 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGVE 135 (306)
Q Consensus 74 ~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t--~~---g~~~~~~~~~~~~i~~i~GiE 135 (306)
++|.|+|...| + ++|+++...|...|+..+..--|.. +. ++..+.+.++..++.+.+.+-
T Consensus 86 lIDaHvHiess-~-~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~p 150 (588)
T PRK10027 86 FIDAHLHIESS-M-MTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVS 150 (588)
T ss_pred eEeccccCCcc-c-CCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeec
Confidence 78999997644 3 4899999999999999987644431 22 334444555555555544443
No 97
>TIGR03564 F420_MSMEG_4879 F420-dependent oxidoreductase, MSMEG_4879 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_4879 from Mycobacterium smegmatis.
Probab=34.74 E-value=86 Score=28.72 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCChHHHHHHHH-hCCCeEEEEeEEEE
Q 021880 92 KLVERAHCNGVKVLALTDHDTMSGIPEAIETAR-RFGMKIIPGVEIST 138 (306)
Q Consensus 92 eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~-~~~i~~i~GiEis~ 138 (306)
++++.|.+.|++.+.+.||.....+.-+-..+. ...|++-+|+=+..
T Consensus 3 ~~a~~aE~~Gfd~~w~~eh~~~~~~~~la~~A~~T~ri~lgt~v~~~~ 50 (265)
T TIGR03564 3 ADARRAAAAGLDSAWLGQVYGYDALTALALVGRAVPGIELGTAVVPTY 50 (265)
T ss_pred HHHHHHHHCCCCEEEecCcCCCCHHHHHHHHHhhCCCceeeeeeccCC
Confidence 678999999999999999987655544333333 35677777776543
No 98
>PRK09875 putative hydrolase; Provisional
Probab=34.41 E-value=2e+02 Score=27.24 Aligned_cols=75 Identities=12% Similarity=0.187 Sum_probs=46.2
Q ss_pred CCCCCCHHHHhHHHhhhhhhccCCCCCCCCCCCccccccccccCCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcCC--
Q 021880 25 GKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGV-- 102 (306)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl-- 102 (306)
.+.++|+.+...|+.+.+-.....|| +++||.. |+..+ ++++.+.+.|+
T Consensus 129 ~~~~it~~E~kvl~Aaa~a~~~TG~p--------------------------i~~Ht~~--~~~g~-e~l~il~e~Gvd~ 179 (292)
T PRK09875 129 SEGKITPLEEKVFIAAALAHNQTGRP--------------------------ISTHTSF--STMGL-EQLALLQAHGVDL 179 (292)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCc--------------------------EEEcCCC--ccchH-HHHHHHHHcCcCc
Confidence 44457777777777776666566666 5677765 44444 45888999999
Q ss_pred cEEEEecCCCCCChHHHHHHHHhCCCe
Q 021880 103 KVLALTDHDTMSGIPEAIETARRFGMK 129 (306)
Q Consensus 103 ~~iaITDH~t~~g~~~~~~~~~~~~i~ 129 (306)
+.+.|+=-|.........+.+ +.|..
T Consensus 180 ~rvvi~H~d~~~d~~~~~~l~-~~G~~ 205 (292)
T PRK09875 180 SRVTVGHCDLKDNLDNILKMI-DLGAY 205 (292)
T ss_pred ceEEEeCCCCCCCHHHHHHHH-HcCCE
Confidence 777666444443333333333 45544
No 99
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.08 E-value=51 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
+-...+.++.|+++|.+.|+||+...
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 44566889999999999999999654
No 100
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=33.76 E-value=78 Score=27.93 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.+|++ |+.|.++- ..+ ...+..+.+.|+|||..-+|
T Consensus 180 ~~~v~~~~~~-G~~v~~wt--vn~-~~~~~~~~~~Gvd~i~TD~P 220 (220)
T cd08579 180 KEFIRQAHQN-GKKVYVWT--VND-PDDMQRYLAMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHHHC-CCEEEEEc--CCC-HHHHHHHHHcCCCEEeCCCC
Confidence 5789999997 58887763 333 46778999999999987654
No 101
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.69 E-value=62 Score=29.01 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
|+..=.+-++.|.+.|-+++ +|-+- .++..++|++.++..+||+
T Consensus 61 GTVl~~e~a~~ai~aGA~Fi-vSP~~----~~~vi~~a~~~~i~~iPG~ 104 (201)
T PRK06015 61 GTILNAKQFEDAAKAGSRFI-VSPGT----TQELLAAANDSDVPLLPGA 104 (201)
T ss_pred EeCcCHHHHHHHHHcCCCEE-ECCCC----CHHHHHHHHHcCCCEeCCC
Confidence 44444456699999999988 55543 3778888999999999998
No 102
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.66 E-value=62 Score=29.44 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
|+..=.+-++.|.+.|.+++ +|-+- .++..++|++.++.++||+
T Consensus 76 GTVl~~e~a~~a~~aGA~Fi-VsP~~----~~~v~~~~~~~~i~~iPG~ 119 (222)
T PRK07114 76 GSIVDAATAALYIQLGANFI-VTPLF----NPDIAKVCNRRKVPYSPGC 119 (222)
T ss_pred EeCcCHHHHHHHHHcCCCEE-ECCCC----CHHHHHHHHHcCCCEeCCC
Confidence 44444455689999999988 55443 3677888999999999998
No 103
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=33.45 E-value=63 Score=24.71 Aligned_cols=40 Identities=35% Similarity=0.458 Sum_probs=25.8
Q ss_pred HHHHHHHcCccccHHHHHHHhhhCCCCccccCCCCCHHHHHHHHHH
Q 021880 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262 (306)
Q Consensus 217 ia~aLv~~g~~~~~~~~~~~yl~~~~~~yv~~~~~~~eevI~~I~~ 262 (306)
+..+|.++||-+- .-+--|+..|.|+|++. -.+|..+|.+
T Consensus 24 Vy~AL~EKGYnPi--nQivGYllSGDPaYIts----h~nAR~lIr~ 63 (79)
T PF06135_consen 24 VYAALEEKGYNPI--NQIVGYLLSGDPAYITS----HNNARNLIRK 63 (79)
T ss_pred HHHHHHHcCCChH--HHHHhheecCCCccccC----cccHHHHHHH
Confidence 5567778887543 22335888899999974 3455566654
No 104
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.05 E-value=2e+02 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
....++.++++.+.+.|++.+.+||++.
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~ii~~~i~~ 177 (253)
T PRK02083 150 PTGLDAVEWAKEVEELGAGEILLTSMDR 177 (253)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCcC
Confidence 4467889999999999999999999874
No 105
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.85 E-value=80 Score=26.89 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--ChHHHHHHHHhCCC
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGM 128 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~~i 128 (306)
..||+|++++|.+...+.|+++-.+--+ -++.+.+.+++.|.
T Consensus 49 ~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 49 FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCC
Confidence 3599999999999999999998544211 13455677777664
No 106
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=32.57 E-value=41 Score=31.82 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
|...++++.||+.|+-.++-|... +...+++.+++.|+|++.+-+.
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG--~~~~~~~~l~~~g~d~~~~~~~ 265 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICG--NTTPILDDLADLGADVLSVDEK 265 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETT--HG-GGHHHHHTSS-SEEEE-TT
T ss_pred HHHHHHHHHHHHhCCCceEEEECC--chHHHHHHHHhcCCCEEEEcCC
Confidence 446789999999998467778653 3345899999999999987544
No 107
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=31.99 E-value=79 Score=27.08 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
++.|+.+|++ |+.|.++.. ....+.+..+.++|+|||-.
T Consensus 139 ~~~v~~~~~~-g~~v~~wtv--n~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 139 TELIASANKL-GLLSRIWTV--NDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred HHHHHHHHHC-CCEEEEEee--CChHHHHHHHHHcCCCEEeC
Confidence 5788999996 577877654 33157888999999999854
No 108
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=31.94 E-value=40 Score=24.07 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=18.4
Q ss_pred eEEceeeeCCCC-CCCCCHHHHHHHHHHcCCcE
Q 021880 73 VVFELHSHSNFS-DGYLSPSKLVERAHCNGVKV 104 (306)
Q Consensus 73 ~~~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~ 104 (306)
-++|+|+|-.+. .....+......+.+.|+..
T Consensus 35 G~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvTT 67 (68)
T PF13594_consen 35 GFIDMHTHLGEPGWQSLDPETEAAAALAGGVTT 67 (68)
T ss_dssp -EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEEE
T ss_pred CeEeeeeccccccccccchhhHHHHHHCcceee
Confidence 489999997643 23344455555555777654
No 109
>PTZ00246 proteasome subunit alpha; Provisional
Probab=31.40 E-value=40 Score=30.85 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=31.6
Q ss_pred EEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 74 ~~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
.+|+++.+ || ||.+-=-|.+..|..+|-..|||.--|
T Consensus 4 ~yd~~~~~-fsp~Grl~QvEYA~~av~~g~t~Igik~~d 41 (253)
T PTZ00246 4 RYDSRTTT-FSPEGRLYQVEYALEAINNASLTVGILCKE 41 (253)
T ss_pred ccCCCCce-ECCCCEEhHHHHHHHHHHhCCCEEEEEECC
Confidence 46888844 76 999999999999999999999997654
No 110
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=31.19 E-value=1.5e+02 Score=27.28 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCC-----hHHHH-HHH-HhCCCeEEEEeEEEE
Q 021880 92 KLVERAHCNGVKVLALTDHDTMSG-----IPEAI-ETA-RRFGMKIIPGVEIST 138 (306)
Q Consensus 92 eli~~A~~~Gl~~iaITDH~t~~g-----~~~~~-~~~-~~~~i~~i~GiEis~ 138 (306)
++++.|.+.|++.+.+.||+.... -.-+. .++ ....|.+-+|+=...
T Consensus 27 ~~a~~ae~~Gfd~~w~~eh~~~~~~~~~~p~~~~a~~a~~T~~i~lg~~v~~~~ 80 (307)
T PF00296_consen 27 ELAQLAEELGFDSVWVSEHHFTDYGSSPDPFVLLAALAARTKRIRLGTAVTPLP 80 (307)
T ss_dssp HHHHHHHHTT-SEEEEE-SSSSTTTSTS-HHHHHHHHHHT-SSSEEEEEEEECS
T ss_pred HHHHHHHHcCCCEEEecccCCCccccchhHHHHHHHHhhccCccceeeeeeccc
Confidence 467788899999999999998632 11122 222 346788887776654
No 111
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=31.14 E-value=94 Score=29.45 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHcC-CEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 251 ~~~eevI~~I~~aG-GiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
|...++++.|++.| |+.++=|.+. ...+++.+++.|++++-+-+.
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 260 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWR 260 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCC
Confidence 55688999999997 7778777762 347899999999999877654
No 112
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.87 E-value=62 Score=29.64 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCEEEEeC-CCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 253 AEVAVQLIHRTGGLAVLAH-PWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 253 ~eevI~~I~~aGGiaVLAH-P~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.++.|+.+|++| +.|.+. |....+..+.+..+.+.|+|||..-+|.
T Consensus 212 ~~~~v~~~~~~G-l~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~p~ 258 (265)
T cd08564 212 TEEFVKKAHENG-LKVMTYFDEPVNDNEEDYKVYLELGVDCICPNDPV 258 (265)
T ss_pred hHHHHHHHHHcC-CEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCCHH
Confidence 457899999995 666554 2222345678899999999999988875
No 113
>PRK05473 hypothetical protein; Provisional
Probab=30.65 E-value=1.2e+02 Score=23.54 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=25.2
Q ss_pred HHHHHHHcCccccHHHHHHHhhhCCCCccccCCCCCHHHHHHHHHH
Q 021880 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262 (306)
Q Consensus 217 ia~aLv~~g~~~~~~~~~~~yl~~~~~~yv~~~~~~~eevI~~I~~ 262 (306)
+-.||.++||-+- .-+--|+..|.|+|++.. .+|..+|.+
T Consensus 27 Vy~AL~EKGYNPi--nQiVGYllSGDPaYItsh----~nAR~lIrk 66 (86)
T PRK05473 27 VYDALEEKGYNPI--NQIVGYLLSGDPAYIPRH----NDARNLIRK 66 (86)
T ss_pred HHHHHHHcCCChH--HHHHhhhccCCCCccCCc----ccHHHHHHH
Confidence 5567778887533 223357888899999743 345555544
No 114
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=30.65 E-value=1.4e+02 Score=31.74 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEE
Q 021880 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 293 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGi 293 (306)
.+++.|+++|++|=-|..-==..--..+..-+.+...|||||
T Consensus 291 ~ak~lvd~~H~~GkeAmmFlgD~WIGtEPy~~~F~~iGlDav 332 (719)
T TIGR02336 291 NAKELVDMSHAAGKEAMMFLGDQWIGTEPYKDGFDEIGLDAV 332 (719)
T ss_pred HHHHHHHHHHhcCceEEEeccCceeccccchhhhhhcCcceE
Confidence 378999999999987764321100112456778889999987
No 115
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=29.98 E-value=1.5e+02 Score=29.24 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=37.8
Q ss_pred eEEceeeeCCCC--CCC---------------------CCHHHH-------HHHHHHcCCcEEEEecCCCC------CCh
Q 021880 73 VVFELHSHSNFS--DGY---------------------LSPSKL-------VERAHCNGVKVLALTDHDTM------SGI 116 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~---------------------~sp~el-------i~~A~~~Gl~~iaITDH~t~------~g~ 116 (306)
-++|.|+|..++ -|. ++++++ +..+.+.|+..+. ||... ..+
T Consensus 60 GlVn~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~--d~~~~~~~~~~~~~ 137 (451)
T PRK08203 60 GLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSS--DHHYLFPNGLRDAL 137 (451)
T ss_pred ceEeccccccchhcccccccCCCcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEE--cceeeccccccchH
Confidence 489999999765 222 234443 2334567887765 65422 124
Q ss_pred HHHHHHHHhCCCeEEEEeEE
Q 021880 117 PEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 117 ~~~~~~~~~~~i~~i~GiEi 136 (306)
..+.+.+.+.|++.+.+...
T Consensus 138 ~~~~~a~~~~G~R~~~~~~~ 157 (451)
T PRK08203 138 DDQIEAAREIGMRFHATRGS 157 (451)
T ss_pred HHHHHHHHHcCCeEEEecce
Confidence 55667777889988876433
No 116
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.95 E-value=19 Score=37.36 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=8.7
Q ss_pred HHcCCcEEEEec
Q 021880 98 HCNGVKVLALTD 109 (306)
Q Consensus 98 ~~~Gl~~iaITD 109 (306)
.+.|+.++.+|-
T Consensus 239 sq~~isfF~~~h 250 (665)
T KOG2422|consen 239 SQKGISFFKFEH 250 (665)
T ss_pred ccCceeEEEeec
Confidence 667777777774
No 117
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=29.46 E-value=1.1e+02 Score=25.92 Aligned_cols=45 Identities=29% Similarity=0.331 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCC--EEEEeCCCCCC-ChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGG--LAVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGG--iaVLAHP~~~~-~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.||++.+ -.|+--|+.|. .+..+.+.++..++.-|||.=|
T Consensus 53 GelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiS 100 (141)
T TIGR01088 53 GQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLS 100 (141)
T ss_pred HHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcC
Confidence 578999999955 36888999886 4578889999999999999765
No 118
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.42 E-value=1e+02 Score=24.78 Aligned_cols=41 Identities=34% Similarity=0.507 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEE-EE
Q 021880 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII-PG 133 (306)
Q Consensus 90 p~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i-~G 133 (306)
..++++.+.+.|.+.+-+.-. .--+++.+.+++.|+.++ |+
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred HHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence 346899999999999998765 334677888899999987 54
No 119
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=29.36 E-value=62 Score=30.55 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCCh-------------HHHHHHHHHcCCCEEEEecCCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNP-------------AAIIRKLKDVGLHGLEVYRSDG 300 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~-------------~~li~~l~~~GldGiEv~~~~~ 300 (306)
.+.|+.+|++| +.|.+ |..+++ .+....+.+.|+|||-.-+|.-
T Consensus 240 ~~~v~~a~~~G-l~v~v--wTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~~ 296 (300)
T cd08604 240 TNVVEKLQSAN-LTVYV--EVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPAT 296 (300)
T ss_pred hHHHHHHHHCC-CEEEE--EEecCCccccchhccCCHHHHHHHHHHHcCCCEEEecCchh
Confidence 37899999996 55544 443332 2456677799999999988863
No 120
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.14 E-value=68 Score=25.31 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=23.4
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 82 NFSDGYLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 82 ~~SDG~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
.+|--+-..-+.++.|+++|.+.|+||+..
T Consensus 54 S~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 54 SQSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred eCCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 344444456788999999999999999964
No 121
>PRK09228 guanine deaminase; Provisional
Probab=28.86 E-value=1.6e+02 Score=29.01 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=25.8
Q ss_pred HHHcCCcEEEEecCCCCC--ChHHHHHHHHhCCCeEEEEeEEE
Q 021880 97 AHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEIS 137 (306)
Q Consensus 97 A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~~i~~i~GiEis 137 (306)
+.+.|...++ ||.+.. ....+.+.+++.|++.+.|-++.
T Consensus 124 ~l~~G~Ttv~--d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 164 (433)
T PRK09228 124 LLRNGTTTAL--VFGTVHPQSVDALFEAAEARNMRMIAGKVLM 164 (433)
T ss_pred HHhCCceEEE--eccccCHHHHHHHHHHHHHcCCeEEeeeeee
Confidence 4677886664 776543 23445566777899988877654
No 122
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=28.83 E-value=49 Score=31.18 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHH
Q 021880 74 VFELHSHSNFSDGYLSPSKLVERAHC 99 (306)
Q Consensus 74 ~~dlH~HT~~SDG~~sp~eli~~A~~ 99 (306)
+++||+|- ||+++|+.+.+.|++
T Consensus 3 K~eLH~Hl---~Gsi~~~~l~~l~~~ 25 (305)
T cd00443 3 KVELHAHL---SGSISPETLLELIKK 25 (305)
T ss_pred ceeEEecC---cCCCCHHHHHHHHHH
Confidence 68999997 789999999999988
No 123
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=28.59 E-value=60 Score=33.79 Aligned_cols=30 Identities=37% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSG 115 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g 115 (306)
|--.+--+.++.|++.|++.| |||||....
T Consensus 135 D~Gi~~~e~i~~a~~~gidvI-VtDHH~~~~ 164 (575)
T PRK11070 135 DNGISSHAGVAHAHALGIPVL-VTDHHLPGE 164 (575)
T ss_pred cCCcCCHHHHHHHHHCCCCEE-EECCCCCCC
No 124
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=28.48 E-value=54 Score=30.04 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHH
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA 123 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~ 123 (306)
..+..++...+..|+..+ ||||| +.+....+
T Consensus 176 ~dIq~iI~~L~~rgiGvL-ITDHN----VREtL~i~ 206 (243)
T COG1137 176 IDIQRIIKHLKDRGIGVL-ITDHN----VRETLDIC 206 (243)
T ss_pred HHHHHHHHHHHhCCceEE-Ecccc----HHHHHhhh
Confidence 345678999999999765 99999 34444444
No 125
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=28.40 E-value=1e+02 Score=29.22 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHc-CCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 251 PLAEVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 251 ~~~eevI~~I~~a-GGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
|...++++.|++. |+++|+=|.+. ...+++.+++.|+|++-+-+.
T Consensus 218 p~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 263 (338)
T TIGR01464 218 PYLKKIIEEVKARLPNVPVILFAKG---AGHLLEELAETGADVVGLDWT 263 (338)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCC---cHHHHHHHHhcCCCEEEeCCC
Confidence 5568899999987 78878766652 346899999999999876553
No 126
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=28.37 E-value=1.1e+02 Score=29.51 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcC------CEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 253 AEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 253 ~eevI~~I~~aG------GiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
++++++.|++.- -+.+-++|.... .+.++.|+++|++-|.+
T Consensus 70 l~~ll~~i~~~~~~~~~~eitie~np~~lt--~e~l~~l~~~Gv~risi 116 (360)
T TIGR00539 70 FERLFESIYQHASLSDDCEITTEANPELIT--AEWCKGLKGAGINRLSL 116 (360)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEE
Confidence 444555555321 256667776432 45677777777765543
No 127
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.84 E-value=1.8e+02 Score=25.24 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=29.9
Q ss_pred CHHHH-HHHHHHcCCcEEEEecCCCCCC--hHHHHHHHHhCCCeEEEE
Q 021880 89 SPSKL-VERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPG 133 (306)
Q Consensus 89 sp~el-i~~A~~~Gl~~iaITDH~t~~g--~~~~~~~~~~~~i~~i~G 133 (306)
+|... ++++.+.|.+.+.+ |-.... ..++.+++++.|++++++
T Consensus 63 d~~~~~~~~~~~~Gad~i~v--h~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTV--LGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred cchHHHHHHHHHcCCCEEEE--eccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 44444 89999999998874 322221 356778888899887764
No 128
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.57 E-value=2.2e+02 Score=22.30 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=24.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 83 FSDGYLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 83 ~SDG~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
+.....+++++++.+.+.+-+.++||=-+
T Consensus 32 ~lg~~~~~~~l~~~~~~~~pdvV~iS~~~ 60 (119)
T cd02067 32 DLGVDVPPEEIVEAAKEEDADAIGLSGLL 60 (119)
T ss_pred ECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 33466899999999999999999998553
No 129
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=27.56 E-value=77 Score=29.73 Aligned_cols=42 Identities=14% Similarity=0.377 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|++| +.|.+ |...+ .+.+..+.+.|+|||-.-+|.
T Consensus 251 ~~~v~~~~~~G-~~v~v--WTVNd-~~~~~~l~~~GVdgIiTD~P~ 292 (300)
T cd08612 251 PSLFRHLQKRG-IQVYG--WVLND-EEEFERAFELGADGVMTDYPT 292 (300)
T ss_pred HHHHHHHHHCC-CEEEE--eecCC-HHHHHHHHhcCCCEEEeCCHH
Confidence 57889999986 55554 44444 478889999999999988875
No 130
>PLN02417 dihydrodipicolinate synthase
Probab=27.30 E-value=2.9e+02 Score=25.64 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=25.1
Q ss_pred CCEEEEeCCCCCCC--hHHHHHHHHHcCCCEEEEecCCC
Q 021880 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG 300 (306)
Q Consensus 264 GGiaVLAHP~~~~~--~~~li~~l~~~GldGiEv~~~~~ 300 (306)
|.++|+|+-+.... .-++.+.+.+.|.||+-+..|+.
T Consensus 69 ~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 69 GKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred CCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 45788888765332 24566677788888888887754
No 131
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=27.25 E-value=79 Score=29.36 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|+.-|+.|.+ |...+ ...++.|.++|+|||=.-+|+
T Consensus 219 ~~~V~~~h~~~gl~V~~--WTVN~-~~~~~~l~~~GVDgIiTD~P~ 261 (263)
T cd08580 219 PAAVDCFRRNSKVKIVL--FGINT-ADDYRLAKCLGADAVMVDSPA 261 (263)
T ss_pred HHHHHHHHhcCCcEEEE--EEeCC-HHHHHHHHHcCCCEEEeCCcc
Confidence 57899999983466655 55544 467889999999999887775
No 132
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=27.22 E-value=1.4e+02 Score=25.08 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
.+.++.+++. |+.|.++.. . ..+.+..+...|+|||..
T Consensus 150 ~~~i~~~~~~-g~~v~~wtv--n-~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 150 PELVRAAHAA-GLKVYVWTV--N-DPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHHc-CCEEEEEcC--C-CHHHHHHHHHCCCCEEec
Confidence 5789999995 799988653 3 357888899999999975
No 133
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=27.18 E-value=99 Score=28.65 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCEEEEeCCCC--------CCChHHHHHHHHHcCCCEEEEecCCCC
Q 021880 253 AEVAVQLIHRTGGLAVLAHPWA--------LKNPAAIIRKLKDVGLHGLEVYRSDGK 301 (306)
Q Consensus 253 ~eevI~~I~~aGGiaVLAHP~~--------~~~~~~li~~l~~~GldGiEv~~~~~~ 301 (306)
+++.|++.|++| |.| -|+- -...++.++++.++|++.||+....-+
T Consensus 56 l~eki~l~~~~g-V~v--~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~ 109 (244)
T PF02679_consen 56 LKEKIDLAHSHG-VYV--YPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTID 109 (244)
T ss_dssp HHHHHHHHHCTT--EE--EE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS-
T ss_pred HHHHHHHHHHcC-CeE--eCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCcee
Confidence 889999999998 333 3331 123378999999999999999765543
No 134
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=27.15 E-value=62 Score=29.73 Aligned_cols=42 Identities=17% Similarity=0.352 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|+.| +.|.+ |...+ ...+..+.+.|+|||-.-+|.
T Consensus 221 ~~~v~~~~~~G-~~v~v--WTVNd-~~~~~~l~~~GVdgIiTD~P~ 262 (264)
T cd08575 221 PNLFDHLRKRG-IQVYL--WVLND-EEDFEEAFDLGADGVMTDSPT 262 (264)
T ss_pred HHHHHHHHhcC-CcEEE--EEECC-HHHHHHHHhcCCCEEEeCCcc
Confidence 57889999975 66655 34343 567889999999999988775
No 135
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=27.07 E-value=93 Score=27.82 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.++..|+.| +.|.+ |.... ...+..+.++|+|||-.-+|
T Consensus 194 ~~~v~~~~~~g-l~v~~--wTvn~-~~~~~~l~~~gvdgiiTD~P 234 (234)
T cd08570 194 QAFLPELKKNG-KKVFV--WTVNT-EEDMRYAIRLGVDGVITDDP 234 (234)
T ss_pred HHHHHHHHHCC-CEEEE--EecCC-HHHHHHHHHCCCCEEEeCCC
Confidence 57889999885 66665 45554 46788999999999987665
No 136
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=27.01 E-value=2.1e+02 Score=25.65 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCC----hHHHHHHHHhCCCeEEE
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETARRFGMKIIP 132 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t~~g----~~~~~~~~~~~~i~~i~ 132 (306)
+..+++++++.+.+.|++.+.|..+....- ..++.+.+++.|+.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEe
Confidence 678999999999999999999997444332 46667777778876554
No 137
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=26.65 E-value=5.8e+02 Score=24.47 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=32.4
Q ss_pred CceEEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC
Q 021880 71 NNVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMSG 115 (306)
Q Consensus 71 ~~~~~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g 115 (306)
....+|.++|-.|- .-.-..+.+.+....-.++.+++.||-.-.+
T Consensus 78 ~~~~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~ 123 (325)
T cd01306 78 GVLRADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQR 123 (325)
T ss_pred CcchhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccc
Confidence 35677888888775 3344566777777777899999999976553
No 138
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=26.49 E-value=67 Score=26.42 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 021880 87 YLSPSKLVERAHCNGVKVLALT 108 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaIT 108 (306)
+-.+-+.++.|+++|+..|+||
T Consensus 116 s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEe
Confidence 3456678999999999999998
No 139
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=26.36 E-value=1.9e+02 Score=19.30 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 24 GGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+.+..+|.++...|..++.- +.+|
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~---~~~P 25 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEK---NPYP 25 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHh---CCCC
Confidence 45567889999999888866 4455
No 140
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=25.96 E-value=98 Score=31.99 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=39.4
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC--CCCCh---HHHHHHHHhCCCeEEEEeE
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD--TMSGI---PEAIETARRFGMKIIPGVE 135 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~--t~~g~---~~~~~~~~~~~i~~i~GiE 135 (306)
-++|.|+|...| + .+|+++.+.+...|...+..--|. ++.+. ..+.+.+++..+.++.++-
T Consensus 51 G~ID~H~Hi~~~-~-~~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~ 116 (552)
T TIGR01178 51 GFIDAHIHIESS-M-LTPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLP 116 (552)
T ss_pred CeEecccccCCC-C-CChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECC
Confidence 488999998544 2 368889899999999888654444 23343 3444545555566555444
No 141
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.95 E-value=75 Score=27.94 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHcCCcEEEEecCC
Q 021880 89 SPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 89 sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
.+-++++.|+++|.+.|+||+.+
T Consensus 126 ~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 126 NVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred HHHHHHHHHHHCCCeEEEEECCC
Confidence 35566777777777777777754
No 142
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=25.88 E-value=2.1e+02 Score=26.08 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC-Ch----HHHHHHHHhCCCeEEEEeEEEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMS-GI----PEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~-g~----~~~~~~~~~~~i~~i~GiEis~ 138 (306)
..+|.++++++.+.|.+.+-++|-+... +- .-+.+.++..+++++.|==|+.
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s 85 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKS 85 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCC
Confidence 3589999999999999999999998653 21 1223444556677777665554
No 143
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=25.67 E-value=92 Score=28.41 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
.+.|+.+|++| +.|.+ |.... ...+..|.++|+|||..
T Consensus 213 ~~~v~~~~~~g-~~v~~--WTVn~-~~~~~~l~~~GVdgIiT 250 (252)
T cd08574 213 AQEIREYSKAN-ISVNL--YVVNE-PWLYSLLWCSGVQSVTT 250 (252)
T ss_pred HHHHHHHHHCC-CEEEE--EccCC-HHHHHHHHHcCCCEEec
Confidence 57899999985 77766 44444 46788899999999963
No 144
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=25.59 E-value=1.3e+02 Score=30.06 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=36.6
Q ss_pred EceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC---------hHHHHHHHHhCCCe
Q 021880 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG---------IPEAIETARRFGMK 129 (306)
Q Consensus 75 ~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g---------~~~~~~~~~~~~i~ 129 (306)
+-+-+|...+.| +...++.|.+.|.+.+.|==++.-.+ ..++.+.+++.++.
T Consensus 131 ~~iGaHvSiaGG---~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~ 191 (413)
T PTZ00372 131 VYIGAHVSASGG---VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYD 191 (413)
T ss_pred ceEEEEEecccc---HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 356667666654 55688999999999999987775432 33466777777764
No 145
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.51 E-value=1.4e+02 Score=27.73 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
...++++++.|++.|++.+-|-|= ...-..++.+.++++|+.+|+-|--++
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 457899999999999999999873 223334566777889998887665544
No 146
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.35 E-value=80 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 021880 87 YLSPSKLVERAHCNGVKVLALT 108 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaIT 108 (306)
+-...+++++|+++|.+.++||
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3446678999999999999999
No 147
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.30 E-value=1.3e+02 Score=27.31 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|++| +.|.++ ...+ .+.+..+.+.|+|||-.-+|.
T Consensus 208 ~~~v~~~~~~g-~~v~~w--Tvn~-~~~~~~l~~~Gvd~IiTD~p~ 249 (256)
T cd08601 208 PWMVHLIHKKG-LLVHPY--TVNE-KADMIRLINWGVDGMFTNYPD 249 (256)
T ss_pred HHHHHHHHHCC-CEEEEE--ecCC-HHHHHHHHhcCCCEEEeCCHH
Confidence 57899999996 777665 3333 567888999999999988875
No 148
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=25.21 E-value=1.2e+02 Score=29.38 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=31.2
Q ss_pred hhhCCCCccccCCCCCHHHHHHHHHHcCC------EEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTGG------LAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aGG------iaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
||++|-|...+. ..++++++.|++.-+ +.+-++|... ..+.++.|.++|++-|.+
T Consensus 64 ~~GGGTPs~l~~--~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i--~~e~l~~l~~~G~~rvsl 124 (375)
T PRK05628 64 FVGGGTPSLLGA--EGLARVLDAVRDTFGLAPGAEVTTEANPEST--SPEFFAALRAAGFTRVSL 124 (375)
T ss_pred EeCCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcCCCEEEE
Confidence 444444443322 235666666666433 3556777643 356777777888776554
No 149
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=25.08 E-value=90 Score=28.33 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|++| +.|.++ ...+ .+.+..+.++|+|||-.-+|+
T Consensus 199 ~~~v~~~~~~g-~~v~~W--Tvn~-~~~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 199 EARVAALKAAG-LRILVY--TVND-PARARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHHHCC-CEEEEE--eCCC-HHHHHHHHHcCCCEEEeCChH
Confidence 57899999996 556554 4444 467889999999999998885
No 150
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=24.96 E-value=1.4e+02 Score=29.05 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=37.6
Q ss_pred hhhCCCCccccCCCCCHHHHHHHHHHc----C--CEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a----G--GiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
||+.|.|.+.+.+ .+++.+++|++. . -+.+=|+|.... .+.++.|.++|++=|++
T Consensus 60 y~GGGTPs~l~~~--~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~--~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 60 FFGGGTPSLMQPE--TVAALLDAIARLWPVADDIEITLEANPTSVE--AGRFRGYRAAGVNRVSL 120 (380)
T ss_pred EeCCCccccCCHH--HHHHHHHHHHHhCCCCCCccEEEEECcCcCC--HHHHHHHHHcCCCEEEE
Confidence 6666666555432 356777888762 2 478899997643 47899999999985543
No 151
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=24.92 E-value=2.4e+02 Score=25.06 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC-----ChHHHHHHHHhCCCeEEEEeEEEEE
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDTMS-----GIPEAIETARRFGMKIIPGVEISTI 139 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t~~-----g~~~~~~~~~~~~i~~i~GiEis~~ 139 (306)
.+|.++++...+.|++.+-+||-+... ...-+.+.++..+++++.|=.+...
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~ 86 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSL 86 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCH
Confidence 389999999999999999999998753 1223345556678888888777764
No 152
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.87 E-value=1.9e+02 Score=27.73 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=34.3
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~G 133 (306)
.+.+.+|+|+. ..++.+++.+++.|++. +-.|.+.. ....+.+++.++.++.+
T Consensus 192 ~~~v~vHa~~~-----~~i~~~l~~~~e~g~~~--~i~H~~~~--~~~~~~la~~gv~v~~~ 244 (359)
T cd01309 192 EIPVRIHAHRA-----DDILTAIRIAKEFGIKI--TIEHGAEG--YKLADELAKHGIPVIYG 244 (359)
T ss_pred CeeEEEEeCCH-----HHHHHHHHHHHHcCCCE--EEECchhH--HHHHHHHHHcCCCEEEC
Confidence 36677887752 24888899999999983 23565533 33445556678766644
No 153
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.80 E-value=3.5e+02 Score=25.26 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=23.5
Q ss_pred CCEEEEeCCCCCC--ChHHHHHHHHHcCCCEEEEecCCC
Q 021880 264 GGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG 300 (306)
Q Consensus 264 GGiaVLAHP~~~~--~~~~li~~l~~~GldGiEv~~~~~ 300 (306)
|-++|+++-+... ..-++.+.+.+.|.|||=+..|+.
T Consensus 69 ~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y 107 (290)
T TIGR00683 69 DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 107 (290)
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 3477777766432 224566677777888887777754
No 154
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=24.76 E-value=62 Score=30.16 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
+-..-+.++.|+++|.+.|+|||.-
T Consensus 190 t~e~i~~a~~ak~~ga~vIaiT~~~ 214 (281)
T COG1737 190 TREIVEAAELAKERGAKVIAITDSA 214 (281)
T ss_pred cHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3455678999999999999999973
No 155
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=24.65 E-value=1.4e+02 Score=28.77 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHc----C--CEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 252 LAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 252 ~~eevI~~I~~a----G--GiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
.+++.++.|++. + -+.+-++|... ..+.++.|+++|++.|.+
T Consensus 69 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~G~~rvsi 116 (377)
T PRK08599 69 QLERLLTAIHRNLPLSGLEEFTFEANPGDL--TKEKLQVLKDSGVNRISL 116 (377)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcCCCEEEE
Confidence 345666666664 2 25666777643 246777777777765544
No 156
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=24.55 E-value=73 Score=30.24 Aligned_cols=44 Identities=27% Similarity=0.279 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCEEEEeCCCCC----------CChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWAL----------KNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~----------~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.++.+|++| +.|.+.-..- .++.+.+..|.+.|+|||..-+|
T Consensus 256 ~~~v~~a~~~g-l~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~GVdgiiTD~P 309 (309)
T cd08602 256 TDLVEDAHAAG-LQVHPYTFRNENTFLPPDFFGDPYAEYRAFLDAGVDGLFTDFP 309 (309)
T ss_pred cHHHHHHHHcC-CEEEEEEecCCCcccCcccCCCHHHHHHHHHHhCCCEEeCCCC
Confidence 47889999886 6665542221 12347888899999999987654
No 157
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.55 E-value=2.3e+02 Score=22.00 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHcCCEEE-EeCCCCCCChHHHHHHHHHcCCC
Q 021880 250 EPLAEVAVQLIHRTGGLAV-LAHPWALKNPAAIIRKLKDVGLH 291 (306)
Q Consensus 250 ~~~~eevI~~I~~aGGiaV-LAHP~~~~~~~~li~~l~~~Gld 291 (306)
.|.+.|+++.+++.|--.+ +.-= ..+.+.++.+.|..+||+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNn-s~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNN-SSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES--SSS-HHHHHHHHHHTTTT
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCC-CCCCHHHHHHHHHhcCcC
Confidence 4678899999999975433 3321 123347888899999987
No 158
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.52 E-value=1.4e+02 Score=21.67 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=25.5
Q ss_pred HHHHHhCCCCCCHHHHHHHhCCCCCCChhHHHHHHHHcCccc
Q 021880 187 ILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (306)
Q Consensus 187 i~~l~~~g~~i~~e~v~~~~~~~~~~~~~hia~aLv~~g~~~ 228 (306)
.+.+.+.|++.+..+++...+-.-..+-.+.+++|.++||+.
T Consensus 16 ~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 16 REYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 344556799999999988876431123445677888888764
No 159
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=24.48 E-value=1.1e+02 Score=27.36 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
++.|+.+|.+| +.|.+. .... ...+..+.+.|+|||..-+.
T Consensus 195 ~~~v~~~~~~G-l~v~vw--TVn~-~~~~~~l~~~GVdgiiTD~~ 235 (237)
T cd08583 195 DKLIEKLNKAG-IYVYVY--TIND-LKDAQEYKKLGVYGIYTDFL 235 (237)
T ss_pred HHHHHHHHHCC-CEEEEE--eCCC-HHHHHHHHHcCCCEEEeCCC
Confidence 57899999985 777664 3333 46789999999999987765
No 160
>PRK07583 cytosine deaminase-like protein; Validated
Probab=24.19 E-value=1.8e+02 Score=28.67 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=39.9
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCh------HHHHHHHHhCCCeEE
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGI------PEAIETARRFGMKII 131 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~------~~~~~~~~~~~i~~i 131 (306)
..+++|+|-.-..+...++.+.+.+.+.|+..-.+.+|.+.-+. .+..+.+++.|+.++
T Consensus 226 ~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv 290 (438)
T PRK07583 226 LDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIV 290 (438)
T ss_pred CCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEE
Confidence 34566665433345556888899999999877788899865432 244566677788776
No 161
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.98 E-value=2.3e+02 Score=25.56 Aligned_cols=46 Identities=13% Similarity=-0.057 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEE
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i 131 (306)
-..++.++.++.+++.|++.|-|.... .....++.+++++.|+.+.
T Consensus 12 ~~~~~l~~~l~~~a~~Gf~~VEl~~~~-~~~~~~~~~~l~~~gl~~~ 57 (258)
T PRK09997 12 FGEYDFLARFEKAAQCGFRGVEFMFPY-DYDIEELKQVLASNKLEHT 57 (258)
T ss_pred ccCCCHHHHHHHHHHhCCCEEEEcCCC-CCCHHHHHHHHHHcCCcEE
Confidence 345689999999999999999986422 2346777888888998863
No 162
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.79 E-value=91 Score=26.63 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCC
Q 021880 89 SPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 89 sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
..-++++.|++.|.+.|+|||...
T Consensus 90 ~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 90 SVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCC
Confidence 345789999999999999999654
No 163
>PRK06380 metal-dependent hydrolase; Provisional
Probab=23.76 E-value=2.5e+02 Score=27.31 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=37.5
Q ss_pred eEEceeeeCCCC--CC-------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCChHHHHHHHH
Q 021880 73 VVFELHSHSNFS--DG-------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIETAR 124 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG-------------------~~sp~el-------i~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~ 124 (306)
-++|.|+|...+ .| .++++++ +..+.+.|...+ .|+.. ......+.++
T Consensus 55 G~Vd~H~Hl~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~--~d~~~--~~~~~~~a~~ 130 (418)
T PRK06380 55 GLINTHAHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAF--VDLYY--SEDIIAKAAE 130 (418)
T ss_pred CEEeeccCCCccccCCcccCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEE--Ecccc--ChHHHHHHHH
Confidence 489999998765 22 2455554 334567788755 46542 2244456667
Q ss_pred hCCCeEEEEeEE
Q 021880 125 RFGMKIIPGVEI 136 (306)
Q Consensus 125 ~~~i~~i~GiEi 136 (306)
+.|++.+.|...
T Consensus 131 ~~G~r~~~~~~~ 142 (418)
T PRK06380 131 ELGIRAFLSWAV 142 (418)
T ss_pred HhCCeEEEeccc
Confidence 789888777554
No 164
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.73 E-value=1.4e+02 Score=29.02 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=37.8
Q ss_pred hhhCCCCccccCCCCCHHHHHHHHHHc--CCEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT--GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a--GGiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
||+.|.|.+.+. ..+++++++|+.. ..+.+=++|... ..+.++.|.++|++-|++
T Consensus 63 y~GGGTPs~l~~--~~l~~ll~~i~~~~~~eit~E~~P~~~--~~~~l~~l~~~G~nrisl 119 (370)
T PRK06294 63 FFGGGTPSLVPP--ALIQDILKTLEAPHATEITLEANPENL--SESYIRALALTGINRISI 119 (370)
T ss_pred EECCCccccCCH--HHHHHHHHHHHhCCCCeEEEEeCCCCC--CHHHHHHHHHCCCCEEEE
Confidence 566666655543 2456777777654 358888999764 357889999999986654
No 165
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.72 E-value=2.3e+02 Score=25.34 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i 131 (306)
.++.++.++.+++.|++.|-+.. ..-....++.+.+++.|+.+.
T Consensus 13 ~~~l~e~~~~~~e~G~~~vEl~~-~~~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 13 ELPFLERFAAAAQAGFTGVEYLF-PYDWDAEALKARLAAAGLEQV 56 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEecC-CccCCHHHHHHHHHHcCCeEE
Confidence 36899999999999999999853 111235667777888898853
No 166
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=23.71 E-value=66 Score=19.93 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCEEEEecC
Q 021880 279 AAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 279 ~~li~~l~~~GldGiEv~~~ 298 (306)
.+.+.++.++|+|||=.-+|
T Consensus 10 ~~~~~~~l~~GVDgI~Td~p 29 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTDYP 29 (30)
T ss_dssp HHHHHHHHHHT-SEEEES-H
T ss_pred HHHHHHHHHcCCCEeeCCCC
Confidence 57889999999999966543
No 167
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.50 E-value=1.3e+02 Score=27.10 Aligned_cols=42 Identities=31% Similarity=0.468 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
++.|+..|++| +.|.+. ... ..+.+..+.+.|+|||..-+|.
T Consensus 202 ~~~v~~~~~~G-~~v~vW--TVN-~~~~~~~l~~~gVdgIiTD~p~ 243 (249)
T cd08561 202 PRFVRAAHAAG-LEVHVW--TVN-DPAEMRRLLDLGVDGIITDRPD 243 (249)
T ss_pred HHHHHHHHHCC-CEEEEE--ecC-CHHHHHHHHhcCCCEEEcCCHH
Confidence 57889999994 777764 333 3578888999999999998875
No 168
>TIGR03559 F420_Rv3520c probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis.
Probab=23.43 E-value=1.8e+02 Score=27.69 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCChHHHHHHHH-hCCCeEEEEeEEE
Q 021880 92 KLVERAHCNGVKVLALTDHDTMSGIPEAIETAR-RFGMKIIPGVEIS 137 (306)
Q Consensus 92 eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~-~~~i~~i~GiEis 137 (306)
++++.|.+.|++.+-++||.....+.-+-..+. ...|.+-+|+-+.
T Consensus 17 ~~a~~AE~~Gfd~~w~~eh~~~d~~~~laa~a~~T~ri~lgt~v~~~ 63 (325)
T TIGR03559 17 DLVAAAEKAGLDSVWVAEAYGFDAVTPLGYLAARTSRVRLGTGVLQL 63 (325)
T ss_pred HHHHHHHHcCCCEEEeccccccCHHHHHHHHHHhCCceeEEeeeecC
Confidence 457778899999999999987655443333333 3668888888543
No 169
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.17 E-value=1e+02 Score=24.53 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
-+-.+-+.++.|++.|...++||+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 345667889999999999999999654
No 170
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=22.94 E-value=1.8e+02 Score=27.80 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=33.4
Q ss_pred eEEceeeeCCCC--CC--------------------CCCHHHHH-------HHHHHcCCcEEEEecCCCCCChHHHHHHH
Q 021880 73 VVFELHSHSNFS--DG--------------------YLSPSKLV-------ERAHCNGVKVLALTDHDTMSGIPEAIETA 123 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG--------------------~~sp~eli-------~~A~~~Gl~~iaITDH~t~~g~~~~~~~~ 123 (306)
-++|.|+|...+ .| ..+++++. ..+...|+..+ .||..... ....+.+
T Consensus 57 Glid~H~Hl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv--~d~~~~~~-~~~~~~~ 133 (411)
T cd01298 57 GLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTF--ADMYFFYP-DAVAEAA 133 (411)
T ss_pred CccccccchhhHHhhcccCCCCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEE--ECccccch-HHHHHHH
Confidence 488999997643 11 13455443 23345787654 46654432 3334444
Q ss_pred HhCCCeEEEEeEE
Q 021880 124 RRFGMKIIPGVEI 136 (306)
Q Consensus 124 ~~~~i~~i~GiEi 136 (306)
...++.+..+.++
T Consensus 134 ~~~g~r~~~~~~~ 146 (411)
T cd01298 134 EELGIRAVLGRGI 146 (411)
T ss_pred HHhCCeEEEEcce
Confidence 4567766655554
No 171
>COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]
Probab=22.81 E-value=2e+02 Score=26.95 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCC--ChHH---HHHH-HHhCCCeEEEEeEEEEEeccCC-------CC--CCCCEEEEE
Q 021880 91 SKLVERAHCNGVKVLALTDHDTMS--GIPE---AIET-ARRFGMKIIPGVEISTIFCQRG-------SE--SEEPVHILA 155 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t~~--g~~~---~~~~-~~~~~i~~i~GiEis~~~~~~~-------~~--~~~~vHiL~ 155 (306)
.++++.|.+.|++.+-+.||++.. .... +..+ +....|.+..|+=......+-. .+ .+.. -.|+
T Consensus 19 ~~la~~AE~~Gfd~~~~~eh~~~~~~~~~p~~~laalA~~T~~I~lgt~v~~l~~~~P~~~A~~~atLd~Ls~GR-~~lg 97 (336)
T COG2141 19 RDLAQAAERLGFDSVWVAEHHNAPGASPDPFVLLAALAAATSRIRLGTGVVLLPYRHPAVVARQAATLDHLSGGR-ADLG 97 (336)
T ss_pred HHHHHHHHHcCCCEEEccccccCCCCCCChHHHHHHHHHHhCcCceEEEEecCCCCChHHHHHHHHHHHHhcCCc-EEEE
Confidence 489999999999999999999864 2111 1122 2357888888887776653310 01 2233 4667
Q ss_pred EeccCCCCcchHHHHHHHHH-HhhhHHHHHHHHHHHHh
Q 021880 156 YYSSCGPSKYEELENFLANI-RDGRFLRAKDMILKLNK 192 (306)
Q Consensus 156 y~~d~~~~~~~~L~~~l~~~-~~~R~~r~~~~i~~l~~ 192 (306)
++....+. +...+.... ...|..+..+.++.++.
T Consensus 98 ig~g~~~~---~~~~~g~~~~~~~r~~~~~E~l~~l~~ 132 (336)
T COG2141 98 LGTGWGPE---EAAAFGALPFHAERYARLREFLEVLRA 132 (336)
T ss_pred EecCCChH---HHhhcCCCCccchHHHHHHHHHHHHHH
Confidence 76432211 122221101 24566667766666654
No 172
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.69 E-value=3.3e+02 Score=24.35 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCC---------------CCChHHHHHHHHhCCCeEEEEeEEEEE
Q 021880 91 SKLVERAHCNGVKVLALTDHDT---------------MSGIPEAIETARRFGMKIIPGVEISTI 139 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t---------------~~g~~~~~~~~~~~~i~~i~GiEis~~ 139 (306)
.+.++.|.+.|++.+.|.+.-+ +....++.+.+++.|+.+...+|-...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 140 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG 140 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 7889999999999999998765 222334556677889988888875544
No 173
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.65 E-value=1.6e+02 Score=28.79 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=38.5
Q ss_pred cCCCCCHHHHHHHHHHcCCEEEEeCCCC-CCChHHHHHHHHHcCCCEEEEe
Q 021880 247 TGSEPLAEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVY 296 (306)
Q Consensus 247 ~~~~~~~eevI~~I~~aGGiaVLAHP~~-~~~~~~li~~l~~~GldGiEv~ 296 (306)
|.-+|.+.+.|++.++.-|+.+.+=-.. ....++++++|.++|+|-|-+.
T Consensus 171 P~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlS 221 (414)
T COG2100 171 PLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLS 221 (414)
T ss_pred CccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEee
Confidence 3446778999999999999998875332 1234789999999999987653
No 174
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.64 E-value=98 Score=26.33 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCC
Q 021880 89 SPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 89 sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
..-++++.|+++|.+.++||+...
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCC
Confidence 345789999999999999999654
No 175
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=22.63 E-value=1.5e+02 Score=29.15 Aligned_cols=55 Identities=13% Similarity=0.310 Sum_probs=37.5
Q ss_pred hhhCCCCccccCCCCCHHHHHHHHHHcC------CEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~aG------GiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
||+.|.|.+.+.+ .++++++.|++.. .+.+=++|.... .+.+..|+++|++=|.+
T Consensus 67 y~GGGTPs~l~~~--~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~--~e~l~~l~~~GvnRiSi 127 (390)
T PRK06582 67 FFGGGTPSLMNPV--IVEGIINKISNLAIIDNQTEITLETNPTSFE--TEKFKAFKLAGINRVSI 127 (390)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhCCCCCCCEEEEEeCCCcCC--HHHHHHHHHCCCCEEEE
Confidence 5666656544322 3456777787743 488899997643 57899999999986554
No 176
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.62 E-value=3.8e+02 Score=25.21 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=42.1
Q ss_pred CCccccCCCCCHHHHHHHHHHc-CCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCCCCCCCC
Q 021880 242 GPAYSTGSEPLAEVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLHTL 305 (306)
Q Consensus 242 ~~~yv~~~~~~~eevI~~I~~a-GGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~~~~~~~ 305 (306)
++-|+..+.++++++-+++... +.+++.|== .-..+-++++++.|+|+|=+-+.+|+...+
T Consensus 209 gaD~I~LD~~~~e~l~~~v~~~~~~i~leAsG---GIt~~ni~~~a~tGvD~Isvg~lt~s~~~~ 270 (277)
T PRK05742 209 GADIVMLDELSLDDMREAVRLTAGRAKLEASG---GINESTLRVIAETGVDYISIGAMTKDVKAV 270 (277)
T ss_pred CCCEEEECCCCHHHHHHHHHHhCCCCcEEEEC---CCCHHHHHHHHHcCCCEEEEChhhcCCccc
Confidence 4556666677887777766654 445555521 123567889999999999999988887543
No 177
>TIGR03560 F420_Rv1855c probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis.
Probab=22.57 E-value=2e+02 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC
Q 021880 90 PSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 90 p~eli~~A~~~Gl~~iaITDH~t 112 (306)
.-++++.|.+.|++.+.+.||..
T Consensus 15 ~~~~a~~AE~~Gfd~vw~~eh~~ 37 (227)
T TIGR03560 15 LLAVARAAEDAGFDALFRSDHFL 37 (227)
T ss_pred HHHHHHHHHHcCCCEEEEchhcc
Confidence 34578888899999999999974
No 178
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.57 E-value=80 Score=24.80 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 83 FSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 83 ~SDG~~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
+|.-+-...+.++.|++.|.+.|+||+...
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 344455666789999999999999998653
No 179
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=22.56 E-value=2e+02 Score=26.06 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEec---CCC---C--CChHHHHHHHHhCCCeEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTD---HDT---M--SGIPEAIETARRFGMKII 131 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITD---H~t---~--~g~~~~~~~~~~~~i~~i 131 (306)
..++++.++.+++.|++.|-+.- |.- . ....++.+++++.|+.+.
T Consensus 12 ~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 12 RLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred eCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEE
Confidence 46899999999999999999852 211 1 134566777788898764
No 180
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.55 E-value=75 Score=28.18 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=29.4
Q ss_pred ceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 76 ELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 76 dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
|+|+ |.|| ||.+.--|.+..|..+|-..|||.--|
T Consensus 2 d~~~-t~fsp~Grl~Qveya~~av~~G~t~IgIk~~d 37 (211)
T cd03749 2 DTDV-TTWSPQGRLFQVEYAMEAVKQGSATVGLKSKT 37 (211)
T ss_pred CCCC-ceECCCCeEeHHHHHHHHHhcCCCEEEEEeCC
Confidence 4555 5676 999999999999999999999997654
No 181
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=22.53 E-value=1.2e+02 Score=27.24 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCCCCCCCCCccccccccccCCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNG 101 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~G 101 (306)
.+++|++||.+|+.+|..-+ |.|+ .+.|++-...|++.|
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~~F------------------------------------~~~~-----~L~p~~K~~LAk~Lg 88 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEKSF------------------------------------ESEK-----KLEPERKKKLAKELG 88 (198)
T ss_pred cccccccccHHHHHHhHHhh------------------------------------cccc-----ccChHHHHHHHHhhC
Confidence 56788899999998876544 2222 478999999999999
Q ss_pred Cc
Q 021880 102 VK 103 (306)
Q Consensus 102 l~ 103 (306)
|+
T Consensus 89 L~ 90 (198)
T KOG0483|consen 89 LQ 90 (198)
T ss_pred CC
Confidence 85
No 182
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=22.45 E-value=1.6e+02 Score=26.27 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEE
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 294 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiE 294 (306)
..-+++|.++||++|+-.+.. ..+.++.+.+ -+|||=
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~---~~~~~~~~l~-~idGll 63 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDA---DDEELDELLD-RIDGLL 63 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS-----HHHHHHHHH-CSSEEE
T ss_pred HHHHHHHHHcCCEEEEEccCC---CHHHHHHHHh-hcCEEE
Confidence 467899999999999876643 3456666665 588873
No 183
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.41 E-value=80 Score=27.93 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.3
Q ss_pred EceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 75 ~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
+|+|+ |+|| ||.+.=-|.+..|...|-..|||.-.|.
T Consensus 1 ~~~~~-~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dg 38 (213)
T cd03753 1 YDRGV-NTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEG 38 (213)
T ss_pred CCCCC-ccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCE
Confidence 36788 4476 9999999999999999999999987653
No 184
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=22.34 E-value=1.5e+02 Score=25.39 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCC--EEEEeCCCCCC-ChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGG--LAVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGG--iaVLAHP~~~~-~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.||++.+ -.|+--|+.|. .+..+.+.++..++.-|||.=|
T Consensus 55 GelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiS 102 (146)
T PRK13015 55 GELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHIS 102 (146)
T ss_pred HHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcC
Confidence 578999999843 36888999885 4578899999999999999765
No 185
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.31 E-value=86 Score=26.72 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHcCCcEEEEecC
Q 021880 89 SPSKLVERAHCNGVKVLALTDH 110 (306)
Q Consensus 89 sp~eli~~A~~~Gl~~iaITDH 110 (306)
..-++++.|+++|.+.|+||+-
T Consensus 116 ~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 116 NVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 4445677777777777777764
No 186
>TIGR03841 F420_Rv3093c probable F420-dependent oxidoreductase, Rv3093c family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=22.22 E-value=1.8e+02 Score=27.22 Aligned_cols=49 Identities=14% Similarity=0.025 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHH-hCCCeEEEEeEEEEE
Q 021880 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIETAR-RFGMKIIPGVEISTI 139 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~-~~~i~~i~GiEis~~ 139 (306)
-++++.|.+.|++.+.+.||.....+.-+...+. ...|++-+|+-+...
T Consensus 13 ~~~a~~AE~~Gfd~~w~~e~~~~d~~~~laalA~~T~ri~lgt~v~~~~~ 62 (301)
T TIGR03841 13 TRLARAADELGYTDVWSGEMAGYDAFALATLVAAWAPRLRLGVGPLPVTV 62 (301)
T ss_pred HHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHhCCcceEeeccccCCC
Confidence 3457788899999999999986665544433333 356777777766543
No 187
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.13 E-value=1.5e+02 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHcCC-EEEEeCCCCCCC--hHHHHHHHHHcCCCEEEEecCCCC
Q 021880 261 HRTGG-LAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGK 301 (306)
Q Consensus 261 ~~aGG-iaVLAHP~~~~~--~~~li~~l~~~GldGiEv~~~~~~ 301 (306)
..++| ++|+|+-+.... .-++.+...+.|+||+=+..|+..
T Consensus 68 ~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 68 EAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN 111 (299)
T ss_pred HHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 33466 678888775432 245777788888888888877643
No 188
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=22.10 E-value=1.2e+02 Score=28.64 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEec
Q 021880 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 297 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~ 297 (306)
|...++++.|++.|+..++ |-.. +...+++.+.+.|+|++.+-+
T Consensus 220 p~~k~i~~~i~~~g~~~il-H~CG--~~~~~~~~l~~~g~d~ls~d~ 263 (340)
T TIGR01463 220 PYQKRLFAYIKEIGGITVL-HICG--FTQPILRDIANNGCFGFSVDM 263 (340)
T ss_pred HHHHHHHHHHHhcCCceEE-EECC--CchhhHHHHHHhCCCEEeecC
Confidence 4467888999999888777 5432 234678999999999977443
No 189
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.06 E-value=1.6e+02 Score=26.59 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.++. |+.|.+. .... .+.+..+.++|+|||-.-+|.
T Consensus 192 ~~~v~~~~~--g~~v~~W--TVn~-~~~~~~l~~~GVdgIiTD~P~ 232 (235)
T cd08565 192 WELVRAAVP--GLRLGVW--TVND-DSLIRYWLACGVRQLTTDRPD 232 (235)
T ss_pred HHHHHHHhC--CCEEEEE--ccCC-HHHHHHHHHcCCCEEEeCCcc
Confidence 356666653 7887764 4333 567889999999999988875
No 190
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=21.98 E-value=1.8e+02 Score=29.98 Aligned_cols=10 Identities=20% Similarity=0.056 Sum_probs=6.2
Q ss_pred hhhhccCCCC
Q 021880 41 TEWVYLDQSH 50 (306)
Q Consensus 41 ~~~~~~~~~~ 50 (306)
.++..+++.|
T Consensus 443 ~~g~~~~~V~ 452 (547)
T TIGR03103 443 EAGLDLDDVL 452 (547)
T ss_pred HcCCCccccC
Confidence 4556666666
No 191
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=21.98 E-value=1.1e+02 Score=28.25 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCC-ChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~-~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|++| +.|.+ |... +..+.++.+.++|+|||-.-+|+
T Consensus 235 ~~~v~~~~~~G-l~v~~--WTv~~n~~~~~~~l~~~GVdgIiTD~p~ 278 (286)
T cd08606 235 PRLIQVVKRSG-LVCVS--YGVLNNDPENAKTQVKAGVDAVIVDSVL 278 (286)
T ss_pred hHHHHHHHHCC-cEEEE--ECCccCCHHHHHHHHHcCCCEEEECCHH
Confidence 46889999986 66654 5431 33567889999999999988774
No 192
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.95 E-value=1.4e+02 Score=27.97 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCC-ChHHHHHHHHHcCCCEEEEec
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALK-NPAAIIRKLKDVGLHGLEVYR 297 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~-~~~~li~~l~~~GldGiEv~~ 297 (306)
.+.|+.+|++| +.|.+ |... +..+.+..+.+.|+|||-.-+
T Consensus 251 ~~~v~~~~~~G-l~v~~--wTv~~n~~~~~~~l~~~GVdgIiTD~ 292 (293)
T cd08572 251 PSLISLVKALG-LVLFT--YGDDNNDPENVKKQKELGVDGVIYDR 292 (293)
T ss_pred cHHHHHHHHcC-cEEEE--ECCCCCCHHHHHHHHHcCCCEEEecC
Confidence 47889999986 66654 4542 345788899999999997654
No 193
>PRK15108 biotin synthase; Provisional
Probab=21.94 E-value=1.7e+02 Score=28.13 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 253 ~eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
+.++++.|++. |+.+.++.+.. ..+.+++|+++|+|++=+
T Consensus 113 i~~~i~~ik~~-~i~v~~s~G~l--s~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 113 LEQMVQGVKAM-GLETCMTLGTL--SESQAQRLANAGLDYYNH 152 (345)
T ss_pred HHHHHHHHHhC-CCEEEEeCCcC--CHHHHHHHHHcCCCEEee
Confidence 55778888866 46777777632 368899999999996543
No 194
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=21.73 E-value=1.7e+02 Score=27.32 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=9.2
Q ss_pred HHHHHHHcCCCEEEEecCC
Q 021880 281 IIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 281 li~~l~~~GldGiEv~~~~ 299 (306)
+.+.+.++|.||+=+..|+
T Consensus 91 ~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 91 LAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHHHcCCCEEEEeCCc
Confidence 3444445555555555443
No 195
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.70 E-value=1.5e+02 Score=28.60 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=28.6
Q ss_pred hhhCCCCccccCCCCCHHHHHHHHHHc--C--CEEEEeCCCCCCChHHHHHHHHHcCCCEEEE
Q 021880 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT--G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 237 yl~~~~~~yv~~~~~~~eevI~~I~~a--G--GiaVLAHP~~~~~~~~li~~l~~~GldGiEv 295 (306)
||++|-|...+.+ .+++.++.|++. . -+.+-++|.... .+.++.|++.|+.-|.+
T Consensus 61 y~GGGTPs~L~~~--~l~~ll~~i~~~~~~~~eitiE~nP~~lt--~e~l~~lk~~G~nrisi 119 (353)
T PRK05904 61 YLGGGTPNCLNDQ--LLDILLSTIKPYVDNNCEFTIECNPELIT--QSQINLLKKNKVNRISL 119 (353)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhcCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEE
Confidence 4444444433322 134455555442 1 366677775442 46677777777765543
No 196
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=21.49 E-value=4.1e+02 Score=24.66 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=27.2
Q ss_pred CCEEEEeCCCCCCC--hHHHHHHHHHcCCCEEEEecCCCC
Q 021880 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGK 301 (306)
Q Consensus 264 GGiaVLAHP~~~~~--~~~li~~l~~~GldGiEv~~~~~~ 301 (306)
|.++|+||-+. .. .-++.+.+.+.|.||+-+..|+..
T Consensus 68 ~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~ 106 (289)
T cd00951 68 GRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLT 106 (289)
T ss_pred CCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 56889998763 21 245677888999999999888653
No 197
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=21.46 E-value=3.4e+02 Score=23.71 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=27.0
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCe
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMK 129 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~ 129 (306)
..+.+||+. .+.++++.+++.+.....|. |....+...+.+++ +.|+.
T Consensus 122 ~pv~iH~~~-------~~~~~~~l~~~~~~~~~~i~-H~~~~~~~~~~~~~-~~g~~ 169 (251)
T cd01310 122 LPVVIHSRD-------AHEDVLEILKEYGPPKRGVF-HCFSGSAEEAKELL-DLGFY 169 (251)
T ss_pred CCeEEEeeC-------chHHHHHHHHhcCCCCCEEE-EccCCCHHHHHHHH-HcCCE
Confidence 346788774 27889999999873333344 44333333444433 34443
No 198
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.26 E-value=1.6e+02 Score=27.87 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=15.7
Q ss_pred EEEEeCCCCCCC--hHHHHHHHHHcCCCEEEEecC
Q 021880 266 LAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 266 iaVLAHP~~~~~--~~~li~~l~~~GldGiEv~~~ 298 (306)
++|+||-+.... .-++.+.+.+.|.||+=+..|
T Consensus 78 vpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 78 VPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 555555543221 133444555555555555555
No 199
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.26 E-value=84 Score=27.83 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=30.2
Q ss_pred EceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 75 ~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
+|+++ |+|| ||.+-=-|.+.+|.++|-..|||.--+
T Consensus 3 yd~~~-~~fsp~Grl~Qveya~~a~~~G~t~igi~~~d 39 (213)
T cd03752 3 YDSRT-TIFSPEGRLYQVEYAMEAISHAGTCLGILAKD 39 (213)
T ss_pred cCCCC-ceECCCCEEhHHHhHHHHHhcCCCEEEEEeCC
Confidence 35555 5587 999999999999999999999998654
No 200
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.23 E-value=99 Score=27.53 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=30.4
Q ss_pred EceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 75 ~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
+|+++ |.|| ||.+.=-|.+..|..+|-..|||.--|
T Consensus 4 yd~~~-t~fsp~Grl~Qveya~~a~~~G~tvIgik~kd 40 (212)
T cd03751 4 YDLSA-STFSPDGRVFQVEYANKAVENSGTAIGIRCKD 40 (212)
T ss_pred ccCCC-ceECCCCcchHHHHHHHHHhcCCCEEEEEeCC
Confidence 46666 5576 999999999999999999999998654
No 201
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=21.08 E-value=1.1e+02 Score=29.28 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCCh---------HHHHH-HHHHcCCCEEEEecC
Q 021880 253 AEVAVQLIHRTGGLAVLAHPWALKNP---------AAIIR-KLKDVGLHGLEVYRS 298 (306)
Q Consensus 253 ~eevI~~I~~aGGiaVLAHP~~~~~~---------~~li~-~l~~~GldGiEv~~~ 298 (306)
..+.|+.+|++| +.| |||..++. ..+.. .+.++|+|||=.-+|
T Consensus 265 ~~~~V~~ah~~G-l~V--~~wTvn~~~~~~~~~~~~~~~~~~l~~~GVDGiiTD~P 317 (318)
T cd08600 265 LTDLVKDAHEAG-LEV--HPYTVRKDALPEYAKDADQLLDALLNKAGVDGVFTDFP 317 (318)
T ss_pred hHHHHHHHHHcC-CEE--EEEeccCCccccccCCHHHHHHHHHHhcCCcEEEcCCC
Confidence 357899999998 555 44544433 23322 257899999976665
No 202
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=20.99 E-value=3.5e+02 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=25.2
Q ss_pred HHHHcCCcEEEEecCCCCC--ChHHHHHHHHhCCCeEEEEeEE
Q 021880 96 RAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 96 ~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~~i~~i~GiEi 136 (306)
.+.+.|+..+. ||.... ......+.+.+.|++.+.|-+.
T Consensus 119 e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 159 (429)
T cd01303 119 ELLRNGTTTAC--YFATIHPESTEALFEEAAKRGQRAIAGKVC 159 (429)
T ss_pred HHHhCCceEEE--eecccChhHHHHHHHHHHHhCCeEEEeeee
Confidence 45677887775 765432 2344556667789888887654
No 203
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=20.84 E-value=1.9e+02 Score=27.15 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCh----H-HHH-HHH-HhCCCeEEEEeEEEEEe
Q 021880 91 SKLVERAHCNGVKVLALTDHDTMSGI----P-EAI-ETA-RRFGMKIIPGVEISTIF 140 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t~~g~----~-~~~-~~~-~~~~i~~i~GiEis~~~ 140 (306)
-++++.|.+.|++.+.+++|+..... + -+. .++ ....|++-+|+=+-..+
T Consensus 23 ~~~a~~AE~lGfd~~w~~Ehh~~~~~~~~~P~~~la~la~~T~rI~lgt~v~~l~~~ 79 (323)
T TIGR03558 23 VELAQHAERLGYHRFWVAEHHNMPGIASSAPEVLIGHIAAATSRIRVGSGGVMLPNH 79 (323)
T ss_pred HHHHHHHHHcCCCEEEecccCCCCCccCCCHHHHHHHHHHhCCeEEEEeeeeccCCC
Confidence 46788899999999999999865422 1 122 222 33567777775544333
No 204
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=20.72 E-value=1.3e+02 Score=28.80 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHcC-CEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 251 ~~~eevI~~I~~aG-GiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
|...++++.|++.| ++.|+-|.+ +...+++.+++.|+|++.+-+.
T Consensus 224 P~~k~i~~~i~~~~~~~~ilh~cg---~~~~~~~~~~~~~~~~is~d~~ 269 (346)
T PRK00115 224 PYMKRIVAELKREHPDVPVILFGK---GAGELLEAMAETGADVVGLDWT 269 (346)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcC---CcHHHHHHHHhcCCCEEeeCCC
Confidence 55688999999998 777886665 3345788899999999877554
No 205
>PLN02591 tryptophan synthase
Probab=20.71 E-value=1.8e+02 Score=26.91 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
+..+++++.|++.|++.+-|-|=- +.-..++.+.+++.|+.+|+=+
T Consensus 93 ~G~~~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCCeEEEEe
Confidence 577899999999999999999842 2334456677888998887754
No 206
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.41 E-value=2.3e+02 Score=26.31 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
..-.+.+++.|++.|++.+.|-|=- +.-..++.+.+++.|+.+++=+--++
T Consensus 105 ~~G~e~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 105 HYGINKFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS 155 (263)
T ss_pred HhCHHHHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 3467999999999999999998853 23345667788899998888776665
No 207
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=20.15 E-value=1.1e+02 Score=20.58 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChhHHHHHHHHcCcc
Q 021880 181 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHV 227 (306)
Q Consensus 181 ~r~~~~i~~l~~~g~~i~~e~v~~~~~~~~~~~~~hia~aLv~~g~~ 227 (306)
+|+..+++.+.+.+-++...++.+..+-+. .+-..+.+.|.+.||+
T Consensus 3 ~ral~iL~~l~~~~~~~t~~eia~~~gl~~-stv~r~L~tL~~~g~v 48 (52)
T PF09339_consen 3 ERALRILEALAESGGPLTLSEIARALGLPK-STVHRLLQTLVEEGYV 48 (52)
T ss_dssp HHHHHHHHCHHCTBSCEEHHHHHHHHTS-H-HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHCcCH-HHHHHHHHHHHHCcCe
Confidence 456677888888877788888888776431 2333466677777765
No 208
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=20.13 E-value=75 Score=23.72 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=14.7
Q ss_pred CCCCCCCCCHHHHhH-HHhhh
Q 021880 22 RGGGKKKMTAEQSLA-FNSVT 41 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~-~~~~~ 41 (306)
++++++++|+||..+ |..++
T Consensus 33 ~~~~~~~kT~EeLDaELD~Ym 53 (74)
T PF13865_consen 33 KGRKKPPKTAEELDAELDAYM 53 (74)
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 334488999999766 77776
No 209
>PRK06687 chlorohydrolase; Validated
Probab=20.12 E-value=2.3e+02 Score=27.60 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=35.8
Q ss_pred eEEceeeeCCCCC--C--------------------CCCHHHHH-------HHHHHcCCcEEEEecCCCCC--ChHHHHH
Q 021880 73 VVFELHSHSNFSD--G--------------------YLSPSKLV-------ERAHCNGVKVLALTDHDTMS--GIPEAIE 121 (306)
Q Consensus 73 ~~~dlH~HT~~SD--G--------------------~~sp~eli-------~~A~~~Gl~~iaITDH~t~~--g~~~~~~ 121 (306)
-++|.|+|...+- | .++|+++. ..+.+.|+..+ .|+.+.. ......+
T Consensus 59 GlIn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv--~d~~~~~~~~~~~~~~ 136 (419)
T PRK06687 59 GLVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTF--NDMYNPNGVDIQQIYQ 136 (419)
T ss_pred ceeeeccCCCccccccccCCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCccee--ehhhccccccHHHHHH
Confidence 4899999997651 1 24444432 22366677665 4654332 2345556
Q ss_pred HHHhCCCeEEEEeEE
Q 021880 122 TARRFGMKIIPGVEI 136 (306)
Q Consensus 122 ~~~~~~i~~i~GiEi 136 (306)
.+++.|+....+.++
T Consensus 137 a~~~~Gir~~~~~~~ 151 (419)
T PRK06687 137 VVKTSKMRCYFSPTL 151 (419)
T ss_pred HHHHhCCceEecccc
Confidence 667778877665543
No 210
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=20.08 E-value=5.9e+02 Score=24.18 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCcEEEEe--cCCC
Q 021880 90 PSKLVERAHCNGVKVLALT--DHDT 112 (306)
Q Consensus 90 p~eli~~A~~~Gl~~iaIT--DH~t 112 (306)
|.+.++.+.+.|++.+.|| |++.
T Consensus 96 i~~~a~~~~~~GlkevvLTsv~~dd 120 (302)
T TIGR00510 96 PAKLAETIKDMGLKYVVITSVDRDD 120 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEeecCCC
Confidence 4456777788999999999 5543
No 211
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=20.05 E-value=1.7e+02 Score=24.84 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCC--EEEEeCCCCCC-ChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGG--LAVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGG--iaVLAHP~~~~-~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.||++.+ -.|+--|+.|. .+..+.+.++..++.-|||.=|
T Consensus 53 gelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiS 100 (140)
T cd00466 53 GELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHIS 100 (140)
T ss_pred HHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 578999999954 47888999886 4578899999999999999765
Done!