Query 021880
Match_columns 306
No_of_seqs 252 out of 2028
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0f_A Putative metal-dependen 100.0 1.2E-51 4E-56 387.0 26.5 224 68-301 8-238 (301)
2 2yb1_A Amidohydrolase; HET: AM 100.0 8.4E-44 2.9E-48 332.2 25.4 221 72-301 1-225 (292)
3 3e38_A Two-domain protein cont 99.9 1.9E-23 6.6E-28 199.0 12.2 140 68-299 14-172 (343)
4 2anu_A Hypothetical protein TM 99.8 9.8E-19 3.3E-23 159.2 12.6 83 68-158 15-124 (255)
5 1m65_A Hypothetical protein YC 99.8 1.7E-18 5.7E-23 155.4 11.6 149 72-300 1-162 (245)
6 2yxo_A Histidinol phosphatase; 99.7 1.2E-17 4.2E-22 151.4 14.4 67 74-140 1-85 (267)
7 2hnh_A DNA polymerase III alph 99.6 8.8E-16 3E-20 161.9 11.3 97 73-174 5-103 (910)
8 3f2b_A DNA-directed DNA polyme 99.6 4.6E-15 1.6E-19 157.3 10.3 104 71-176 113-228 (1041)
9 2w9m_A Polymerase X; SAXS, DNA 99.5 8.9E-14 3E-18 140.6 13.1 73 68-140 322-406 (578)
10 2hpi_A DNA polymerase III alph 99.5 5.6E-14 1.9E-18 151.1 11.0 100 73-174 6-115 (1220)
11 3qy7_A Tyrosine-protein phosph 99.5 5.8E-14 2E-18 128.9 9.1 145 74-299 1-166 (262)
12 2wje_A CPS4B, tyrosine-protein 99.5 8.8E-14 3E-18 125.8 8.0 67 73-139 4-88 (247)
13 3b0x_A DNA polymerase beta fam 99.4 3.4E-12 1.2E-16 129.0 14.0 69 72-140 336-418 (575)
14 3dcp_A Histidinol-phosphatase; 98.9 3.4E-09 1.2E-13 98.1 8.4 68 73-140 1-98 (283)
15 1v77_A PH1877P, hypothetical p 97.4 0.00015 5E-09 64.0 5.6 55 73-140 8-63 (212)
16 2y1h_A Putative deoxyribonucle 93.1 0.16 5.4E-06 45.0 6.4 62 72-134 4-65 (272)
17 1zzm_A Putative deoxyribonucle 90.1 0.7 2.4E-05 40.4 7.2 61 72-134 3-63 (259)
18 3rcm_A TATD family hydrolase; 88.6 0.48 1.6E-05 43.2 5.1 64 73-137 2-68 (287)
19 3gg7_A Uncharacterized metallo 86.3 0.29 1E-05 43.9 2.2 49 73-126 2-50 (254)
20 1xwy_A DNAse TATD, deoxyribonu 86.2 0.87 3E-05 39.9 5.2 60 73-134 4-63 (264)
21 4gbu_A NADPH dehydrogenase 1; 86.2 1.1 3.8E-05 42.7 6.3 23 252-274 97-121 (400)
22 2xio_A Putative deoxyribonucle 84.2 0.79 2.7E-05 41.5 4.1 54 73-127 2-65 (301)
23 2gzx_A Putative TATD related D 83.8 1.5 5.2E-05 38.0 5.7 59 74-134 2-60 (265)
24 4a3u_A NCR, NADH\:flavin oxido 83.3 1.6 5.5E-05 40.9 5.9 23 252-274 80-104 (358)
25 1yix_A Deoxyribonuclease YCFH; 83.1 1.2 4.2E-05 38.7 4.7 60 73-134 2-64 (265)
26 3gka_A N-ethylmaleimide reduct 81.7 2.5 8.4E-05 39.8 6.5 23 252-274 88-112 (361)
27 4ab4_A Xenobiotic reductase B; 81.1 2.7 9.1E-05 39.6 6.5 23 252-274 80-104 (362)
28 1z41_A YQJM, probable NADH-dep 78.8 3.2 0.00011 38.3 6.2 23 252-274 84-108 (338)
29 3ipw_A Hydrolase TATD family p 78.8 1.5 5.3E-05 40.7 4.0 56 71-127 25-90 (325)
30 3kru_A NADH:flavin oxidoreduct 78.3 3 0.0001 38.9 5.9 23 252-274 82-106 (343)
31 3l5a_A NADH/flavin oxidoreduct 77.8 2.5 8.6E-05 40.6 5.3 24 251-274 104-129 (419)
32 3tjl_A NADPH dehydrogenase; OL 77.6 3.1 0.00011 39.9 5.8 23 252-274 93-117 (407)
33 3gr7_A NADPH dehydrogenase; fl 77.0 3.5 0.00012 38.3 5.9 23 252-274 84-108 (340)
34 3hgj_A Chromate reductase; TIM 76.3 3.3 0.00011 38.6 5.5 23 252-274 82-106 (349)
35 2hsa_B 12-oxophytodienoate red 75.1 6.6 0.00022 37.4 7.4 23 252-274 94-118 (402)
36 3l5l_A Xenobiotic reductase A; 75.1 3.2 0.00011 38.9 5.1 23 252-274 81-105 (363)
37 1j6o_A TATD-related deoxyribon 74.9 2 6.7E-05 38.0 3.4 64 71-136 10-73 (268)
38 1icp_A OPR1, 12-oxophytodienoa 73.7 5.7 0.00019 37.4 6.5 23 252-274 92-116 (376)
39 3k30_A Histamine dehydrogenase 72.5 4.6 0.00016 40.8 5.9 23 252-274 90-114 (690)
40 2gou_A Oxidoreductase, FMN-bin 71.4 7.4 0.00025 36.4 6.7 23 252-274 82-106 (365)
41 1akh_A Protein (mating-type pr 70.1 4.8 0.00017 27.3 3.8 29 19-50 2-30 (61)
42 1vyr_A Pentaerythritol tetrani 69.1 8.4 0.00029 36.1 6.5 24 252-275 82-107 (364)
43 2r14_A Morphinone reductase; H 67.0 9.7 0.00033 35.8 6.5 23 252-274 86-110 (377)
44 2ecc_A Homeobox and leucine zi 65.9 12 0.0004 27.3 5.3 27 21-50 2-28 (76)
45 2vc7_A Aryldialkylphosphatase; 65.5 5.6 0.00019 35.4 4.3 64 73-136 17-96 (314)
46 4gxw_A Adenosine deaminase; am 63.3 3.5 0.00012 39.1 2.5 28 73-103 30-57 (380)
47 1o94_A Tmadh, trimethylamine d 62.4 9.7 0.00033 38.8 5.9 23 252-274 85-109 (729)
48 3iar_A Adenosine deaminase; pu 61.5 3.8 0.00013 38.6 2.5 28 73-103 7-34 (367)
49 3e2v_A 3'-5'-exonuclease; stru 61.3 9.4 0.00032 36.5 5.2 54 72-126 12-75 (401)
50 3pao_A Adenosine deaminase; st 61.0 4.1 0.00014 37.7 2.5 28 73-103 11-38 (326)
51 3rys_A Adenosine deaminase 1; 60.7 4.1 0.00014 38.0 2.5 28 73-103 14-41 (343)
52 1ps9_A 2,4-dienoyl-COA reducta 60.6 8.4 0.00029 38.7 5.0 23 252-274 82-106 (671)
53 3cjp_A Predicted amidohydrolas 58.8 16 0.00056 31.6 6.1 35 73-112 3-37 (272)
54 4i6k_A Amidohydrolase family p 58.0 9.3 0.00032 34.0 4.4 36 73-108 26-73 (294)
55 3ngf_A AP endonuclease, family 54.6 35 0.0012 29.3 7.5 53 78-131 13-65 (269)
56 2ob3_A Parathion hydrolase; me 54.0 16 0.00053 33.4 5.2 60 73-132 16-92 (330)
57 1bf6_A Phosphotriesterase homo 47.0 16 0.00056 31.6 4.1 64 73-136 6-82 (291)
58 3h4u_A Amidohydrolase; signatu 44.5 43 0.0015 31.2 6.8 62 73-136 88-183 (479)
59 2pgf_A Adenosine deaminase; me 44.5 14 0.00047 34.5 3.3 28 73-103 45-72 (371)
60 2da2_A Alpha-fetoprotein enhan 41.6 62 0.0021 22.2 5.7 26 22-50 7-32 (70)
61 2f6k_A Metal-dependent hydrola 40.7 20 0.00069 31.4 3.6 36 73-108 2-55 (307)
62 1bw5_A ISL-1HD, insulin gene e 40.6 56 0.0019 22.1 5.3 26 22-50 3-28 (66)
63 3kts_A Glycerol uptake operon 40.5 70 0.0024 27.3 6.8 46 247-293 37-86 (192)
64 3kws_A Putative sugar isomeras 39.5 42 0.0014 29.0 5.5 44 88-131 38-81 (287)
65 1fjl_A Paired protein; DNA-bin 39.2 57 0.0019 23.2 5.3 27 21-50 17-43 (81)
66 2dmu_A Homeobox protein goosec 38.3 66 0.0022 22.1 5.4 25 23-50 8-32 (70)
67 2dmt_A Homeobox protein BARH-l 35.9 63 0.0022 22.9 5.1 26 22-50 17-42 (80)
68 1914_A Signal recognition part 35.7 5.6 0.00019 35.3 -0.9 27 7-33 113-139 (232)
69 2q02_A Putative cytoplasmic pr 35.1 95 0.0033 26.2 7.1 46 86-131 17-68 (272)
70 2e1o_A Homeobox protein PRH; D 35.1 89 0.003 21.4 5.6 25 23-50 8-32 (70)
71 3jx9_A Putative phosphoheptose 34.6 18 0.00062 30.2 2.1 29 86-114 88-118 (170)
72 2yxb_A Coenzyme B12-dependent 34.3 71 0.0024 25.9 5.8 49 85-133 53-106 (161)
73 1x2n_A Homeobox protein pknox1 34.2 87 0.003 21.6 5.5 29 22-50 7-35 (73)
74 2djn_A Homeobox protein DLX-5; 33.3 93 0.0032 21.3 5.5 25 23-50 8-32 (70)
75 3ur8_A Glucan endo-1,3-beta-D- 33.2 76 0.0026 29.2 6.3 48 85-137 12-59 (323)
76 1k77_A EC1530, hypothetical pr 32.5 68 0.0023 27.0 5.6 45 87-132 14-58 (260)
77 4f0r_A 5-methylthioadenosine/S 32.1 83 0.0028 28.8 6.6 61 73-137 65-155 (447)
78 3nqb_A Adenine deaminase 2; PS 31.8 17 0.00058 36.3 1.7 58 74-134 91-154 (608)
79 3vni_A Xylose isomerase domain 31.8 64 0.0022 27.8 5.5 46 87-132 16-65 (294)
80 2wvv_A Alpha-L-fucosidase; alp 31.3 56 0.0019 31.4 5.3 52 85-138 75-147 (450)
81 3ch0_A Glycerophosphodiester p 31.1 50 0.0017 28.8 4.6 42 254-299 226-267 (272)
82 2m0c_A Homeobox protein arista 31.0 74 0.0025 21.9 4.7 21 22-42 9-29 (75)
83 1mnm_C Protein (MAT alpha-2 tr 30.8 93 0.0032 22.4 5.3 27 24-50 29-55 (87)
84 4dzh_A Amidohydrolase; adenosi 30.3 93 0.0032 29.1 6.7 61 73-137 74-164 (472)
85 3lmz_A Putative sugar isomeras 30.0 58 0.002 27.7 4.8 56 73-131 18-78 (257)
86 4dyk_A Amidohydrolase; adenosi 30.0 75 0.0025 29.2 5.8 61 73-137 67-157 (451)
87 2dmq_A LIM/homeobox protein LH 29.9 93 0.0032 21.8 5.1 26 22-50 7-32 (80)
88 1wa3_A 2-keto-3-deoxy-6-phosph 29.9 77 0.0026 26.1 5.4 41 88-134 71-111 (205)
89 2mys_B Myosin; muscle protein, 29.9 62 0.0021 25.0 4.6 40 27-102 17-56 (166)
90 3qvq_A Phosphodiesterase OLEI0 29.9 40 0.0014 29.3 3.7 42 254-299 200-241 (252)
91 3dtp_E RLC, myosin regulatory 29.9 8.2 0.00028 31.8 -0.8 20 84-103 70-89 (196)
92 2cra_A Homeobox protein HOX-B1 29.8 94 0.0032 21.3 5.0 25 23-50 8-32 (70)
93 2dms_A Homeobox protein OTX2; 29.8 1.1E+02 0.0039 21.4 5.6 26 22-50 7-32 (80)
94 2uyg_A 3-dehydroquinate dehydr 29.7 54 0.0019 26.9 4.2 46 253-298 52-101 (149)
95 3lnp_A Amidohydrolase family p 29.5 1.2E+02 0.0039 28.1 7.1 61 73-137 87-177 (468)
96 1k61_A Mating-type protein alp 29.0 1.1E+02 0.0037 20.2 5.1 26 25-50 1-26 (60)
97 3i5g_B Myosin regulatory light 29.0 93 0.0032 24.4 5.5 43 25-103 6-48 (153)
98 3jr2_A Hexulose-6-phosphate sy 28.8 70 0.0024 27.0 5.0 52 72-130 61-112 (218)
99 2qul_A D-tagatose 3-epimerase; 28.7 82 0.0028 26.9 5.6 45 88-132 17-65 (290)
100 2z00_A Dihydroorotase; zinc bi 28.7 60 0.0021 29.5 4.9 36 73-108 50-87 (426)
101 2vi6_A Homeobox protein nanog; 28.5 72 0.0025 21.3 4.1 25 23-50 4-28 (62)
102 2h1k_A IPF-1, pancreatic and d 28.2 86 0.0029 21.0 4.5 26 22-50 3-28 (63)
103 1x92_A APC5045, phosphoheptose 28.1 39 0.0013 27.8 3.2 25 87-111 126-150 (199)
104 3sho_A Transcriptional regulat 28.1 42 0.0014 27.2 3.3 25 88-112 101-125 (187)
105 2cue_A Paired box protein PAX6 28.1 1.3E+02 0.0044 21.2 5.6 20 23-42 8-27 (80)
106 2da1_A Alpha-fetoprotein enhan 28.1 75 0.0026 21.7 4.2 26 22-50 7-32 (70)
107 1vkf_A Glycerol uptake operon 27.9 71 0.0024 27.2 4.7 43 250-293 42-87 (188)
108 1i60_A IOLI protein; beta barr 27.9 1.4E+02 0.0047 25.2 6.8 45 87-131 13-63 (278)
109 2yva_A DNAA initiator-associat 27.8 40 0.0014 27.6 3.2 25 87-111 122-146 (196)
110 3f4w_A Putative hexulose 6 pho 27.8 56 0.0019 27.1 4.2 46 253-298 66-113 (211)
111 3rkq_A Homeobox protein NKX-2. 27.7 1.3E+02 0.0043 19.4 5.3 20 23-42 3-22 (58)
112 2otd_A Glycerophosphodiester p 27.5 72 0.0025 27.4 4.9 46 254-303 197-242 (247)
113 3cqj_A L-ribulose-5-phosphate 27.2 66 0.0023 27.9 4.7 46 86-131 28-83 (295)
114 2da3_A Alpha-fetoprotein enhan 27.2 65 0.0022 22.6 3.8 26 22-50 17-42 (80)
115 1z69_A COG2141, coenzyme F420- 26.9 93 0.0032 27.7 5.7 48 91-138 17-66 (327)
116 3mz2_A Glycerophosphoryl diest 26.7 47 0.0016 29.8 3.6 46 253-299 217-269 (292)
117 1f07_A Coenzyme F420-dependent 26.6 92 0.0032 27.6 5.7 46 91-136 17-64 (321)
118 3lmz_A Putative sugar isomeras 26.6 48 0.0017 28.2 3.6 41 251-291 30-76 (257)
119 2dmn_A Homeobox protein TGIF2L 26.5 1.3E+02 0.0045 21.4 5.5 28 23-50 8-35 (83)
120 2hi3_A Homeodomain-only protei 26.5 1E+02 0.0035 21.3 4.7 21 22-42 2-22 (73)
121 3em5_A Beta-1,3-glucanase; gly 26.4 97 0.0033 28.4 5.7 47 85-136 11-57 (316)
122 2pz0_A Glycerophosphoryl diest 26.1 65 0.0022 27.8 4.4 41 254-298 201-241 (252)
123 2d59_A Hypothetical protein PH 25.7 90 0.0031 24.6 4.9 38 91-131 91-128 (144)
124 1du6_A PBX1, homeobox protein 25.6 1.2E+02 0.0042 20.2 4.9 28 23-50 4-31 (64)
125 3cny_A Inositol catabolism pro 25.6 95 0.0033 26.7 5.4 46 86-133 29-74 (301)
126 2zxd_A Alpha-L-fucosidase, put 25.5 1.5E+02 0.005 28.5 7.1 51 85-137 102-173 (455)
127 2ood_A BLR3880 protein; PSI-II 25.4 78 0.0027 29.7 5.1 40 94-135 124-165 (475)
128 2c4w_A 3-dehydroquinate dehydr 25.3 52 0.0018 27.8 3.3 46 253-298 64-113 (176)
129 1puf_B PRE-B-cell leukemia tra 25.2 1.5E+02 0.0053 20.2 5.5 28 23-50 2-29 (73)
130 3s5o_A 4-hydroxy-2-oxoglutarat 25.1 1.2E+02 0.0039 27.4 6.0 45 256-300 72-120 (307)
131 1wh5_A ZF-HD homeobox family p 25.1 1.5E+02 0.0051 21.1 5.5 21 23-43 18-38 (80)
132 4h41_A Putative alpha-L-fucosi 25.0 1.1E+02 0.0038 28.3 5.9 52 87-138 50-124 (340)
133 2oog_A Glycerophosphoryl diest 24.9 69 0.0023 28.3 4.4 41 254-298 231-271 (287)
134 1tk9_A Phosphoheptose isomeras 24.8 42 0.0014 27.1 2.7 23 88-110 124-146 (188)
135 1fvp_A Flavoprotein 390, FP390 24.7 45 0.0015 28.1 3.0 26 91-116 29-56 (231)
136 1nfp_A LUXF gene product; flav 24.6 46 0.0016 28.1 3.0 25 92-116 30-56 (228)
137 3ks6_A Glycerophosphoryl diest 24.5 50 0.0017 28.6 3.3 41 254-298 194-234 (250)
138 1nk2_P Homeobox protein VND; h 24.5 1.4E+02 0.0047 20.8 5.2 25 23-50 10-34 (77)
139 1m3s_A Hypothetical protein YC 24.2 52 0.0018 26.6 3.2 23 89-111 94-116 (186)
140 3dz1_A Dihydrodipicolinate syn 24.2 98 0.0034 27.9 5.4 38 264-301 75-114 (313)
141 2g0w_A LMO2234 protein; putati 24.2 1.1E+02 0.0038 26.6 5.6 45 88-132 36-86 (296)
142 1ig7_A Homeotic protein MSX-1; 24.1 1.5E+02 0.0051 19.2 5.1 24 24-50 2-25 (58)
143 3tha_A Tryptophan synthase alp 24.0 62 0.0021 28.7 3.8 45 89-134 104-148 (252)
144 2xij_A Methylmalonyl-COA mutas 24.0 1.1E+02 0.0039 31.5 6.2 47 87-133 641-692 (762)
145 1ezw_A Coenzyme F420-dependent 23.8 1.1E+02 0.0038 27.6 5.7 48 91-138 20-69 (349)
146 2k40_A Homeobox expressed in E 23.7 1.6E+02 0.0054 19.8 5.3 25 23-50 2-26 (67)
147 2da5_A Zinc fingers and homeob 23.7 1.2E+02 0.0042 21.1 4.7 24 24-50 9-32 (75)
148 3kws_A Putative sugar isomeras 23.6 75 0.0026 27.4 4.3 40 252-291 39-79 (287)
149 1xrs_B D-lysine 5,6-aminomutas 23.6 1.3E+02 0.0044 26.8 5.9 56 71-133 157-221 (262)
150 3ovp_A Ribulose-phosphate 3-ep 23.5 1.2E+02 0.0042 26.0 5.6 57 72-138 64-121 (228)
151 2zds_A Putative DNA-binding pr 23.3 1.8E+02 0.0062 25.4 6.9 45 87-131 14-68 (340)
152 3aal_A Probable endonuclease 4 23.2 2.7E+02 0.0093 24.0 8.1 53 76-129 7-68 (303)
153 1vd6_A Glycerophosphoryl diest 23.1 65 0.0022 27.3 3.7 42 254-299 176-217 (224)
154 2ffi_A 2-pyrone-4,6-dicarboxyl 23.1 26 0.00088 30.5 1.1 37 73-109 13-61 (288)
155 2hdd_A Protein (engrailed home 22.9 1.1E+02 0.0037 20.2 4.2 25 23-50 4-28 (61)
156 2xbl_A Phosphoheptose isomeras 22.9 49 0.0017 27.0 2.8 23 89-111 131-153 (198)
157 2kt0_A Nanog, homeobox protein 22.9 1.5E+02 0.0051 20.9 5.2 28 20-50 20-47 (84)
158 1u83_A Phosphosulfolactate syn 22.8 1.2E+02 0.004 27.4 5.4 46 253-301 82-135 (276)
159 1yz8_P Pituitary homeobox 2; D 22.8 63 0.0022 22.1 3.0 26 22-50 3-28 (68)
160 2xhz_A KDSD, YRBH, arabinose 5 22.7 53 0.0018 26.4 3.0 24 88-111 110-133 (183)
161 2yus_A SWI/SNF-related matrix- 22.7 38 0.0013 24.5 1.8 30 14-43 6-35 (79)
162 2o55_A Putative glycerophospho 22.7 1.4E+02 0.0047 25.7 5.9 44 254-298 202-246 (258)
163 3no3_A Glycerophosphodiester p 22.5 46 0.0016 28.7 2.6 41 255-299 187-227 (238)
164 3a02_A Homeobox protein arista 22.3 1.3E+02 0.0045 19.7 4.5 24 24-50 1-24 (60)
165 1req_A Methylmalonyl-COA mutas 22.2 1.2E+02 0.0041 31.1 5.9 47 87-133 633-684 (727)
166 1aq0_A 1,3-1,4-beta-glucanase; 22.2 1.4E+02 0.0048 27.1 6.0 48 85-137 10-57 (306)
167 2l7z_A Homeobox protein HOX-A1 22.2 1.8E+02 0.006 20.1 5.3 25 23-50 8-32 (73)
168 4do7_A Amidohydrolase 2; enzym 22.1 86 0.0029 27.6 4.5 55 73-127 4-74 (303)
169 2juh_A Telomere binding protei 22.1 39 0.0013 26.8 1.8 31 16-46 7-37 (121)
170 3mpg_A Dihydroorotase, dhoase; 22.0 2.1E+02 0.007 26.1 7.3 38 73-110 54-93 (428)
171 2ly9_A Zinc fingers and homeob 22.0 1.7E+02 0.006 20.0 5.3 27 21-50 5-31 (74)
172 3l12_A Putative glycerophospho 21.8 64 0.0022 28.9 3.6 41 254-298 258-298 (313)
173 1ftt_A TTF-1 HD, thyroid trans 21.8 1.4E+02 0.0048 20.2 4.7 25 23-50 3-27 (68)
174 1ity_A TRF1; helix-turn-helix, 21.3 78 0.0027 21.8 3.2 26 20-45 4-29 (69)
175 1wi3_A DNA-binding protein SAT 21.3 75 0.0026 22.8 3.0 24 24-47 9-32 (71)
176 4e38_A Keto-hydroxyglutarate-a 21.1 1.2E+02 0.0041 26.5 5.0 44 253-297 24-67 (232)
177 2roh_A RTBP1, telomere binding 21.1 47 0.0016 26.3 2.2 30 17-46 22-51 (122)
178 1ccw_A Protein (glutamate muta 20.9 1.1E+02 0.0037 24.0 4.4 36 70-112 30-65 (137)
179 3tdn_A FLR symmetric alpha-bet 20.8 1.6E+02 0.0055 25.0 5.9 50 87-136 34-88 (247)
180 2eja_A URO-D, UPD, uroporphyri 20.7 43 0.0015 30.4 2.1 44 251-297 217-260 (338)
181 1xrt_A Dihydroorotase, dhoase; 20.6 1.6E+02 0.0056 27.3 6.3 35 74-108 102-138 (467)
182 1luc_B Bacterial luciferase; m 20.6 1.5E+02 0.0052 26.4 5.9 47 91-137 25-78 (324)
183 3fkr_A L-2-keto-3-deoxyarabona 20.6 1E+02 0.0036 27.7 4.7 37 264-300 76-114 (309)
184 3iwp_A Copper homeostasis prot 20.5 1E+02 0.0036 27.9 4.6 46 250-295 138-185 (287)
185 1puf_A HOX-1.7, homeobox prote 20.4 1.5E+02 0.0052 20.6 4.7 25 23-50 14-38 (77)
186 3l21_A DHDPS, dihydrodipicolin 20.3 1.5E+02 0.005 26.7 5.7 37 264-300 83-121 (304)
187 1jeo_A MJ1247, hypothetical pr 20.2 51 0.0017 26.5 2.3 24 89-112 97-120 (180)
188 3mdu_A N-formimino-L-glutamate 20.2 2.1E+02 0.0071 26.5 6.9 61 73-133 51-155 (453)
189 2i2w_A Phosphoheptose isomeras 20.1 51 0.0017 27.6 2.4 21 90-110 147-167 (212)
No 1
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=100.00 E-value=1.2e-51 Score=387.00 Aligned_cols=224 Identities=30% Similarity=0.488 Sum_probs=207.4
Q ss_pred CCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCC
Q 021880 68 AVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSES 147 (306)
Q Consensus 68 ~~~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~ 147 (306)
...+++++||||||.||||.++|++++++|++.|++.|||||||++.|+.++.+++++.||++|+|+||++.+ .
T Consensus 8 ~~~m~~~~DLH~Hs~~SDG~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~gi~~i~GvEis~~~------~ 81 (301)
T 3o0f_A 8 AEPPAQGWDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTEITAVD------E 81 (301)
T ss_dssp CCCCSSSEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCCEEEEEEEEEEE------T
T ss_pred CccccceEEeeECCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCCccccHHHHHHHHHhcCCEEEEEEEEEEEe------C
Confidence 3345689999999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CCCEEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCC--CCCChhHHHHHHHHcC
Q 021880 148 EEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKG--VAPGRLHVARAMVEAG 225 (306)
Q Consensus 148 ~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~~--~~~~~~hia~aLv~~g 225 (306)
+..+|+|+|++|. ..+.|.++++.+++.|.+|+++|+++|++. ++++||++...++++ ..++|+|||++|+++|
T Consensus 82 ~~~vHiL~~~~d~---~~~~l~~~l~~~~~~R~~R~~~i~~~L~~~-~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G 157 (301)
T 3o0f_A 82 DVSVHMLAFQYDP---SNEHISSMFANTRAARLRRTKRMVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAG 157 (301)
T ss_dssp TEEEEEEEESCCT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTT
T ss_pred CceEEEEEEcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcC
Confidence 7789999999864 367899999999999999999999999999 999999998876542 3689999999999999
Q ss_pred ccccHHHHHHHhhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCC-----ChHHHHHHHHHcCCCEEEEecCCC
Q 021880 226 HVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDG 300 (306)
Q Consensus 226 ~~~~~~~~~~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGiaVLAHP~~~~-----~~~~li~~l~~~GldGiEv~~~~~ 300 (306)
|+.+..++|++||+.++|+||+..+++++++|++|+++||++|||||+++. ...+++++|+++|+|||||||+++
T Consensus 158 ~~~~~~~aF~~~l~~g~~~yV~~~~~~~~eaI~~I~~aGGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv~~~~~ 237 (301)
T 3o0f_A 158 VYETRSDAFADAVSAKSKYYIPTPSPSTHEVIAAVKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHRGN 237 (301)
T ss_dssp SCSSHHHHHTTTTSTTSTTCCCCCCCBHHHHHHHHHHTTCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEEESTTS
T ss_pred CCCCHHHHHHHHHcCCCccccCccCCCHHHHHHHHHHCCCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999997753 347899999999999999999988
Q ss_pred C
Q 021880 301 K 301 (306)
Q Consensus 301 ~ 301 (306)
+
T Consensus 238 ~ 238 (301)
T 3o0f_A 238 P 238 (301)
T ss_dssp C
T ss_pred C
Confidence 6
No 2
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=100.00 E-value=8.4e-44 Score=332.20 Aligned_cols=221 Identities=32% Similarity=0.471 Sum_probs=201.7
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCCE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPV 151 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~v 151 (306)
|+++||||||.||||..+|++++++|++.|++.||||||+++.|+.++.+.+++.+|++|+|+|+++.+ .+..+
T Consensus 1 M~~~DLH~Ht~~SDg~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~gi~vi~G~Ei~~~~------~~~~~ 74 (292)
T 2yb1_A 1 MANIDLHFHSRTSDGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLNGVEVSVSW------GRHTV 74 (292)
T ss_dssp -CCEECCBCCTTTTCSSCHHHHHHHHHTTCCSEEEECCBTCCTTHHHHHHHHHHTTCCEEEEEEEEEEE------TTEEE
T ss_pred CCccccccCCCccCCCCCHHHHHHHHHHCCCCEEEEecCCccccHHHHHHHHHHcCCEEEEEEEEEEec------CCcee
Confidence 357899999999999999999999999999999999999999999999988888999999999999987 45678
Q ss_pred EEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChhHHHHHHHHcCccccHH
Q 021880 152 HILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLK 231 (306)
Q Consensus 152 HiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~~~~~~~~hia~aLv~~g~~~~~~ 231 (306)
|+|+|+.+.. .+.+.+++..+++.|.+|+.++++++++.|++++++++...++++..++++|++++|++.|++.+..
T Consensus 75 hil~~~~d~~---~~~l~~~~~~~~~~r~~r~~~~~~~l~~~g~~~~~~~v~~~a~~~~~igr~H~a~~lv~~g~~~~~~ 151 (292)
T 2yb1_A 75 HIVGLGIDPA---EPALAAGLKSIREGRLERARQMGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMR 151 (292)
T ss_dssp EEEEESCCTT---CHHHHHHHHHHHTTHHHHHHHHHHHHHHTTCTTHHHHHHTTCSSGGGCCHHHHHHHHHHTTSSSSHH
T ss_pred EEEEEecCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHhccCCCCcCHHHHHHHHHHcCCcCCHH
Confidence 9999997632 4568888999999999999999999999999999999988765444689999999999999999999
Q ss_pred HHHHHhhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCh----HHHHHHHHHcCCCEEEEecCCCC
Q 021880 232 QAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP----AAIIRKLKDVGLHGLEVYRSDGK 301 (306)
Q Consensus 232 ~~~~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGiaVLAHP~~~~~~----~~li~~l~~~GldGiEv~~~~~~ 301 (306)
++|++||..++|+|++..+++++++|++|+++||++|||||+++... .++++++++.|++||||+++.++
T Consensus 152 ~~f~~yl~~~~~~~v~~~~~~~~~~i~~i~~~Gg~~VlAHP~r~~~~~~~~~~~l~~l~~~g~~giEv~~~~~~ 225 (292)
T 2yb1_A 152 TVFRKYLTPGKPGYVSHQWASLEDAVGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHS 225 (292)
T ss_dssp HHHHHSSSTTSTTCCCCCCBCHHHHHHHHHHTTCEEEECCGGGSSCCHHHHHHHHHHHHHTTCCEEEEEETTCC
T ss_pred HHHHHHHccCCceeccCCCCCHHHHHHHHHHcCCEEEEECcCccccchhhHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999987643 56788899999999999999875
No 3
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=99.89 E-value=1.9e-23 Score=198.96 Aligned_cols=140 Identities=26% Similarity=0.340 Sum_probs=113.2
Q ss_pred CCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecC------------CCCCChHHHHHHHHhCCCeEEEEeE
Q 021880 68 AVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDH------------DTMSGIPEAIETARRFGMKIIPGVE 135 (306)
Q Consensus 68 ~~~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH------------~t~~g~~~~~~~~~~~~i~~i~GiE 135 (306)
+...|+++|||+||.||||..+|++++++|++.|++.|||||| +++.|+.++.+++++.++.+|+|+|
T Consensus 14 ~~~~~~~~DlH~Ht~~SDg~~~~~elv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~vi~G~E 93 (343)
T 3e38_A 14 DGYTTLKCDFHMHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSE 93 (343)
T ss_dssp TTCEEEEEECCBCCTTTTCSBCHHHHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEECCEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 4457899999999999999999999999999999999999999 5667888888888889999999999
Q ss_pred EEEEeccCCCCCCCCEEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChh
Q 021880 136 ISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRL 215 (306)
Q Consensus 136 is~~~~~~~~~~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~~~~~~~~ 215 (306)
|++.+ ...|+|+|+.+. +.
T Consensus 94 i~~~~--------~~gHiL~l~~~~----~~------------------------------------------------- 112 (343)
T 3e38_A 94 ITRAM--------APGHFNAIFLSD----SN------------------------------------------------- 112 (343)
T ss_dssp EECST--------TTCEEEEESCSC----SG-------------------------------------------------
T ss_pred EEEcC--------CCcEEEEEeCCC----CC-------------------------------------------------
Confidence 99853 357999998531 00
Q ss_pred HHHHHHHHcCccccHHHHHHHhhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCC-h-----HHHHHHHH-Hc
Q 021880 216 HVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKN-P-----AAIIRKLK-DV 288 (306)
Q Consensus 216 hia~aLv~~g~~~~~~~~~~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGiaVLAHP~~~~~-~-----~~li~~l~-~~ 288 (306)
+....+++++++.+++.||++|+|||.++.. . ..-++++. ..
T Consensus 113 -------------------------------~~~~~~~~eli~~v~~~Ggl~iiAHP~r~~~~~~g~~~~~~~~e~l~~~ 161 (343)
T 3e38_A 113 -------------------------------PLEQKDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEG 161 (343)
T ss_dssp -------------------------------GGCCSSHHHHHHHHHHTTCEEEECCTTCTTTSSSCCCCCHHHHHHHHTT
T ss_pred -------------------------------CCcccCHHHHHHHHHHCCCEEEEeCCCCcccCccccccccchHHHhccc
Confidence 0011468999999999999999999998531 1 11144443 47
Q ss_pred CCCEEEEecCC
Q 021880 289 GLHGLEVYRSD 299 (306)
Q Consensus 289 GldGiEv~~~~ 299 (306)
++||||||++.
T Consensus 162 ~iDaIEv~N~~ 172 (343)
T 3e38_A 162 CMHGIEVANGH 172 (343)
T ss_dssp CCSEEEEEETT
T ss_pred CccEEEEcCCC
Confidence 89999999886
No 4
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=99.78 E-value=9.8e-19 Score=159.20 Aligned_cols=83 Identities=30% Similarity=0.482 Sum_probs=65.1
Q ss_pred CCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC----CCC---------------hHH--------HH
Q 021880 68 AVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT----MSG---------------IPE--------AI 120 (306)
Q Consensus 68 ~~~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t----~~g---------------~~~--------~~ 120 (306)
+...|+++|||+||.||||..+|++++++|++.|++.||||||+. +.+ +.+ +.
T Consensus 15 ~~~~~~~~DlH~Ht~~SDg~~t~ee~v~~A~~~Gl~~i~iTDH~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (255)
T 2anu_A 15 TDTEWLLCDFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLKRLWREQK 94 (255)
T ss_dssp --CEEEEEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHTTCCCCSCCSTTHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeecCCCcCCCCCHHHHHHHHHHCCCCEEEEcCCCCcccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999972 322 222 11
Q ss_pred HHHHhCCCeEEEEeEEEEEeccCCCCCCCCEEEEEEec
Q 021880 121 ETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 158 (306)
Q Consensus 121 ~~~~~~~i~~i~GiEis~~~~~~~~~~~~~vHiL~y~~ 158 (306)
++++..++.+++|+|+++. +..+|+++++.
T Consensus 95 ~~~~~~~i~v~~G~Ei~~~--------~~~~h~l~~~~ 124 (255)
T 2anu_A 95 RAWEEYGMILIPGVEITNN--------TDLYHIVAVDV 124 (255)
T ss_dssp HHHHHHSCEEEEEEEEEET--------TTTEEEEEESC
T ss_pred hhccccCcEEEEEEEEeeC--------CCCeeEEEecc
Confidence 2234569999999999974 25689999863
No 5
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=99.77 E-value=1.7e-18 Score=155.39 Aligned_cols=149 Identities=21% Similarity=0.316 Sum_probs=97.6
Q ss_pred ceEEceeeeCCCCC-CCCCHHHHHHHHHHcCCcEEEEecCCC-CCChHH--HH---HHH--HhCCCeEEEEeEEEEEecc
Q 021880 72 NVVFELHSHSNFSD-GYLSPSKLVERAHCNGVKVLALTDHDT-MSGIPE--AI---ETA--RRFGMKIIPGVEISTIFCQ 142 (306)
Q Consensus 72 ~~~~dlH~HT~~SD-G~~sp~eli~~A~~~Gl~~iaITDH~t-~~g~~~--~~---~~~--~~~~i~~i~GiEis~~~~~ 142 (306)
|+++||||||.+|| |..+|++++++|++.|++.||||||++ +.+... .. +.+ +..++.+++|+|+++..
T Consensus 1 m~~~DlH~Ht~~Sd~g~~~~~e~v~~A~~~Gl~~iaiTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~G~Ei~~~~-- 78 (245)
T 1m65_A 1 MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPRVVDGVGILRGIEANIKN-- 78 (245)
T ss_dssp -CCEECCBCCTTSTTCCCCHHHHHHHHHHHTCCEEEEEEECTTSTTCCCTHHHHGGGGSCSEETTEEEEEEEEEEBCS--
T ss_pred CCceEeCcCCCCCCCCCCcHHHHHHHHHHCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCeEEEEEEeeeeC--
Confidence 36789999999995 677999999999999999999999998 655421 11 111 22589999999999854
Q ss_pred CCCCCCCCEEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChhHHHHHHH
Q 021880 143 RGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMV 222 (306)
Q Consensus 143 ~~~~~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~~~~~~~~hia~aLv 222 (306)
... + .+. ... ++ . ...+. +...
T Consensus 79 ----~~~--~-----~~~----~~~---~~---------------~---~ld~v---------------i~~~------- 100 (245)
T 1m65_A 79 ----VDG--E-----IDC----SGK---MF---------------D---SLDLI---------------IAGF------- 100 (245)
T ss_dssp ----TTC--C-----BSC----CHH---HH---------------H---HCSEE---------------EEEC-------
T ss_pred ----CCC--c-----hhH----HHH---HH---------------h---hCCEE---------------EEee-------
Confidence 111 1 110 111 11 0 00000 0000
Q ss_pred HcCccccHHHHHHHhhhCCCCccccCCC-CCHHHHHHHHHHcCCEEEEeCCCCCCC---hHHHHHHHHHcCCCEEEEecC
Q 021880 223 EAGHVENLKQAFARYLYDGGPAYSTGSE-PLAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 223 ~~g~~~~~~~~~~~yl~~~~~~yv~~~~-~~~eevI~~I~~aGGiaVLAHP~~~~~---~~~li~~l~~~GldGiEv~~~ 298 (306)
..++|.+... ..+++++++|+ +||++|||||.++.. ..++++.+++.| ++||++++
T Consensus 101 ------------------h~~~~~~~~~~~~~~~~~~~i~-~g~~~vlaHp~~~~~~~~~~~~~~~~~~~g-~~iEvn~~ 160 (245)
T 1m65_A 101 ------------------HEPVFAPHDKATNTQAMIATIA-SGNVHIISHPGNPKYEIDVKAVAEAAAKHQ-VALEINNS 160 (245)
T ss_dssp ------------------CTTTSCCCCHHHHHHHHHHHHH-TSCCSEECCTTCTTSCCCHHHHHHHHHHHT-CEEEEETT
T ss_pred ------------------cCCccCcchHHHHHHHHHHHHh-CCCCCEEECCCCccchhHHHHHHHHHHHcC-CEEEEECC
Confidence 0011211111 23578899898 999999999997542 357899999999 79999998
Q ss_pred CC
Q 021880 299 DG 300 (306)
Q Consensus 299 ~~ 300 (306)
..
T Consensus 161 ~~ 162 (245)
T 1m65_A 161 SF 162 (245)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 6
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=99.75 E-value=1.2e-17 Score=151.41 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=57.0
Q ss_pred EEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-------C---------hHHHHHHHHhC-CCeEEEEeE
Q 021880 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS-------G---------IPEAIETARRF-GMKIIPGVE 135 (306)
Q Consensus 74 ~~dlH~HT~~S-DG~~sp~eli~~A~~~Gl~~iaITDH~t~~-------g---------~~~~~~~~~~~-~i~~i~GiE 135 (306)
++||||||.+| ||..+|++++++|++.|++.||||||+++. + +.++.++.++. +|.+++|+|
T Consensus 1 ~~DlH~Ht~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~i~i~~G~E 80 (267)
T 2yxo_A 1 MVDSHVHTPLCGHAEGHPEAYLEEARAKGLKGVVFTDHSPMPPWYDPESRMRLEALPFYLLALERVRERAQDLYVGIGLE 80 (267)
T ss_dssp CEEEEECCGGGSSCCSCHHHHHHHHHHTTCSEEEEEEECCCCTTSSGGGSCCGGGHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCccCcCcCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCCCCCcccCccccccHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 47999999999 999999999999999999999999999987 3 33344444444 999999999
Q ss_pred EEEEe
Q 021880 136 ISTIF 140 (306)
Q Consensus 136 is~~~ 140 (306)
+++..
T Consensus 81 i~~~~ 85 (267)
T 2yxo_A 81 ADFHP 85 (267)
T ss_dssp EECCT
T ss_pred eccCC
Confidence 99753
No 7
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=99.62 E-value=8.8e-16 Score=161.94 Aligned_cols=97 Identities=24% Similarity=0.395 Sum_probs=82.5
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCCCCCCC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~~~~~~ 150 (306)
.++||||||.|| ||..+|++++++|++.|++.||||||+++.|+.++.+.+++.||++|+|+|+++.+... ....
T Consensus 5 ~~vdLH~HT~~S~lDG~~~~~elv~~A~~~Gl~alAITDH~~~~G~~~~~~~~~~~gIk~I~G~Ei~~~~~~~---~~~~ 81 (910)
T 2hnh_A 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLL---GDEL 81 (910)
T ss_dssp CCCCCCBCCGGGSSSCCSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCEEEEEEEEEEECTTT---TTCC
T ss_pred ceeeecccccCchhcccCCHHHHHHHHHHCCCCEEEEEeCCcchhHHHHHHHHHHCCCeEEEEEEEEEecCCC---Cccc
Confidence 478999999999 99999999999999999999999999999999999999999999999999999986211 0135
Q ss_pred EEEEEEeccCCCCcchHHHHHHHH
Q 021880 151 VHILAYYSSCGPSKYEELENFLAN 174 (306)
Q Consensus 151 vHiL~y~~d~~~~~~~~L~~~l~~ 174 (306)
+|+++|+.+ ..++.+|+++++.
T Consensus 82 ~hlv~la~n--~~g~~nL~~l~s~ 103 (910)
T 2hnh_A 82 THLTVLAAN--NTGYQNLTLLISK 103 (910)
T ss_dssp EEEEEEECS--HHHHHHHHHHHHH
T ss_pred ceEEEEEcC--HHHHHHHHHHHHH
Confidence 899999975 3356666665544
No 8
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=99.57 E-value=4.6e-15 Score=157.31 Aligned_cols=104 Identities=28% Similarity=0.387 Sum_probs=87.0
Q ss_pred CceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccCCC---
Q 021880 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS--- 145 (306)
Q Consensus 71 ~~~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~~~--- 145 (306)
.+.++||||||.|| ||..+|++++++|++.|+++||||||+++.|+.++++.+++.||++|+|+|+++.+.....
T Consensus 113 ~~~~vdLH~HT~~S~lDG~~~~~eLv~~A~~~G~~aiAITDH~~~~G~~~~~~~a~~~gIk~I~G~E~~~~~~~~~~~~~ 192 (1041)
T 3f2b_A 113 GEKRVELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEANIVDDGVPIAYN 192 (1041)
T ss_dssp TSCCCBCCBCCTTSTTTCCSCHHHHHHHHHHTTCSCEEECCBSCCTTHHHHHHHHHHHTCCEEEEEEEEEECC-------
T ss_pred CcceEEcccCCcCccccccCCHHHHHHHHHHCCCCEEEEecccchhhHHHHHHHHHHCCCEEEEEEEEEEEeCCcccccc
Confidence 46899999999999 9999999999999999999999999999999999999999999999999999997632100
Q ss_pred -------CCCCCEEEEEEeccCCCCcchHHHHHHHHHH
Q 021880 146 -------ESEEPVHILAYYSSCGPSKYEELENFLANIR 176 (306)
Q Consensus 146 -------~~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~ 176 (306)
......|++.+..+ ..+|.+|+++++...
T Consensus 193 ~~~~~~~~~~~~~hlvlLAkN--~~Gy~nL~kLvS~a~ 228 (1041)
T 3f2b_A 193 ETHRRLGSGSGPFHVTLLAQN--ETGLKNLFKLVSLSH 228 (1041)
T ss_dssp -----------CEEEEEEECS--HHHHHHHHHHHHHHH
T ss_pred cccccccccCCCceEEEEeCC--HHHHHHHHHHHHHHH
Confidence 01234799999865 467899988887643
No 9
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=99.50 E-value=8.9e-14 Score=140.65 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=59.8
Q ss_pred CCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCh------HHHH---H---HHHhCCCeEEEEeE
Q 021880 68 AVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGI------PEAI---E---TARRFGMKIIPGVE 135 (306)
Q Consensus 68 ~~~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~------~~~~---~---~~~~~~i~~i~GiE 135 (306)
....|+++||||||.||||..+|++++++|++.|++.||||||++..++ ..+. + .+.+.+|.+++|+|
T Consensus 322 v~~~~~~~DlH~HT~~SDG~~t~eemv~~A~~~Gl~~IaiTDH~~~~~~~~~~~~~~~~~~~~~i~~l~~~gi~il~GiE 401 (578)
T 2w9m_A 322 VTVGDLRGMIHTHSTWSDGGASIREMAEATLTLGHEFLGTADHSRAAYYANGLTIERLREQLKEIRELQRAGLPIVAGSE 401 (578)
T ss_dssp CCGGGCCEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEECEEBTTCGGGTCBCHHHHHHHHHHHHHHHHTTCCEECEEE
T ss_pred cchhhhceEEEecCCccCCCCCHHHHHHHHHHCCCeEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHhcCCeEEEeee
Confidence 3456789999999999999999999999999999999999999988543 2222 1 22233999999999
Q ss_pred EEEEe
Q 021880 136 ISTIF 140 (306)
Q Consensus 136 is~~~ 140 (306)
+++..
T Consensus 402 v~i~~ 406 (578)
T 2w9m_A 402 VDILD 406 (578)
T ss_dssp EEBCT
T ss_pred ecccC
Confidence 99864
No 10
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=99.49 E-value=5.6e-14 Score=151.09 Aligned_cols=100 Identities=25% Similarity=0.308 Sum_probs=83.6
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHH--cCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEEEEeccC-CCCC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHC--NGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-GSES 147 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~--~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis~~~~~~-~~~~ 147 (306)
.++|||+||.|| ||..+|++++++|++ .|++.+|||||+++.|+.++.+.+++.||++|+|+|+++..... +.+.
T Consensus 6 ~fvdLH~HT~~SlLDG~~~~~elv~~A~~~~~G~~alAITDH~~~~G~~~f~~~a~~~gIk~I~G~E~~~~~~~~~d~~~ 85 (1220)
T 2hpi_A 6 KFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRKR 85 (1220)
T ss_dssp CCCCCSBCCTTSTTTCCCCHHHHHHHHHHHCCSSCEEEEEEETCCTTHHHHHHHHHTTTCEEEEEEEEEEESSCTTCCCC
T ss_pred cEeEcccccCCCcccccCCHHHHHHHHHhccCCCCEEEEEecCcchhHHHHHHHHHHcCCeEEEEEEEEEeccccccccc
Confidence 578999999999 999999999999999 99999999999999999999999999999999999999975321 1110
Q ss_pred ----CC-CEEEEEEeccCCCCcchHHHHHHHH
Q 021880 148 ----EE-PVHILAYYSSCGPSKYEELENFLAN 174 (306)
Q Consensus 148 ----~~-~vHiL~y~~d~~~~~~~~L~~~l~~ 174 (306)
+. ..|++.+..+ ..+|.+|+++++.
T Consensus 86 ~~~~d~~~~hLvlLAkN--~~GY~NL~kLiS~ 115 (1220)
T 2hpi_A 86 GKGLDGGYFHLTLLAKD--FTGYQNLVRLASR 115 (1220)
T ss_dssp C-----CEEEEEEEECS--HHHHHHHHHHHHH
T ss_pred cccccCccceEEEEEcC--HHHHHHHHHHHHH
Confidence 11 3799999864 3468888877664
No 11
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=99.48 E-value=5.8e-14 Score=128.88 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=94.5
Q ss_pred EEceeeeCCC--CCCCCCHHH---HHHHHHHcCCcEEEEecCCCCCC-------h----HHHHHHHHh--CCCeEEEEeE
Q 021880 74 VFELHSHSNF--SDGYLSPSK---LVERAHCNGVKVLALTDHDTMSG-------I----PEAIETARR--FGMKIIPGVE 135 (306)
Q Consensus 74 ~~dlH~HT~~--SDG~~sp~e---li~~A~~~Gl~~iaITDH~t~~g-------~----~~~~~~~~~--~~i~~i~GiE 135 (306)
++|+||||.+ |||..++++ ++++|.+.|++.|++|||..... + .++.+..++ .+|.+++|+|
T Consensus 1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~T~H~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~i~I~~G~E 80 (262)
T 3qy7_A 1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIATPHHNNGVYKNEPAAVREAADQLNKRLIKEDIPLHVLPGQE 80 (262)
T ss_dssp CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEECCCBSEETTEECCHHHHHHHHHHHHHHHHHTTCCCEEECCCE
T ss_pred CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEecCeE
Confidence 4799999998 599999997 99999999999999999974321 1 223333333 4789999999
Q ss_pred EEEEeccCCCCCCCCEEEEEEeccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChh
Q 021880 136 ISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRL 215 (306)
Q Consensus 136 is~~~~~~~~~~~~~vHiL~y~~d~~~~~~~~L~~~l~~~~~~R~~r~~~~i~~l~~~g~~i~~e~v~~~~~~~~~~~~~ 215 (306)
+...... ... +.+.. +. .+..
T Consensus 81 v~~~~~~----------------------~~~----------------------l~~~~-------~~-------~l~~- 101 (262)
T 3qy7_A 81 IRIYGEV----------------------EQD----------------------LAKRQ-------LL-------SLND- 101 (262)
T ss_dssp EECCTTH----------------------HHH----------------------HHTTC-------SC-------CGGG-
T ss_pred EecchhH----------------------HHH----------------------HhcCC-------Cc-------EECC-
Confidence 9864200 000 00000 00 0000
Q ss_pred HHHHHHHHcCccccHHHHHHHhhhCCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCh---HHHHHHHHHcCCCE
Q 021880 216 HVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP---AAIIRKLKDVGLHG 292 (306)
Q Consensus 216 hia~aLv~~g~~~~~~~~~~~yl~~~~~~yv~~~~~~~eevI~~I~~aGGiaVLAHP~~~~~~---~~li~~l~~~GldG 292 (306)
.+|+-..-+.. ......+++|..|.++|+++|||||.||... .+++.++++.|+ +
T Consensus 102 -------------------~~~vl~e~~~~--~~~~~~~~~l~~i~~~g~v~ILAHPeRy~~~~~~~~~l~~l~~~G~-~ 159 (262)
T 3qy7_A 102 -------------------TKYILIEFPFD--HVPRYAEQLFYDLQLKGYIPVIAHPERNREIRENPSLLYHLVEKGA-A 159 (262)
T ss_dssp -------------------SSEEEEECCTT--CCCTTHHHHHHHHHHTTCEEEEECGGGCHHHHHCTHHHHHHHHTTC-E
T ss_pred -------------------ceEEEEeCCCc--cCHHHHHHHHHHHHHCCCcEEEECCCccccccccHHHHHHHHHCCC-E
Confidence 00110000100 1123578999999999999999999987521 367999999995 8
Q ss_pred EEEecCC
Q 021880 293 LEVYRSD 299 (306)
Q Consensus 293 iEv~~~~ 299 (306)
+|+..+.
T Consensus 160 iEiN~~s 166 (262)
T 3qy7_A 160 SQITSGS 166 (262)
T ss_dssp EEEEHHH
T ss_pred EEEECCc
Confidence 9998753
No 12
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=99.46 E-value=8.8e-14 Score=125.79 Aligned_cols=67 Identities=28% Similarity=0.329 Sum_probs=51.6
Q ss_pred eEEceeeeCCCC--CCCCCHH---HHHHHHHHcCCcEEEEecCCCCCC----hH---H----HHHHHHh--CCCeEEEEe
Q 021880 73 VVFELHSHSNFS--DGYLSPS---KLVERAHCNGVKVLALTDHDTMSG----IP---E----AIETARR--FGMKIIPGV 134 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~---eli~~A~~~Gl~~iaITDH~t~~g----~~---~----~~~~~~~--~~i~~i~Gi 134 (306)
.++|+||||.+| ||..+++ +++++|.+.|++.|++|||..... .. + +.+..++ .+|.+++|+
T Consensus 4 ~m~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~~i~~TdH~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~G~ 83 (247)
T 2wje_A 4 GMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGA 83 (247)
T ss_dssp CEEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEECCCEEBTTTBCCCHHHHHHHHHHHHHHHHHHCTTCEEECCC
T ss_pred CCEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEee
Confidence 368999999998 9999998 699999999999999999976321 11 1 1221222 479999999
Q ss_pred EEEEE
Q 021880 135 EISTI 139 (306)
Q Consensus 135 Eis~~ 139 (306)
|+...
T Consensus 84 E~~~~ 88 (247)
T 2wje_A 84 EIYYT 88 (247)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99863
No 13
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=99.38 E-value=3.4e-12 Score=128.96 Aligned_cols=69 Identities=28% Similarity=0.302 Sum_probs=57.6
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChH------H-------HHHHHHh-CCCeEEEEeEEE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIP------E-------AIETARR-FGMKIIPGVEIS 137 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~------~-------~~~~~~~-~~i~~i~GiEis 137 (306)
++++||||||.||||..++++++++|++.|++.|+||||+...++. + +.++.++ .++++++|+|++
T Consensus 336 ~~~~DlH~HT~~SDG~~t~ee~v~~A~~~G~~~iaiTDH~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~i~i~~G~Ei~ 415 (575)
T 3b0x_A 336 QVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGAEVD 415 (575)
T ss_dssp GCCEEEEECCTTTTCSCCHHHHHHHHHHTTCSEEEEEEECTTTTTSSCSCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEE
T ss_pred hcCeeEeecCCccCCCCCHHHHHHHHHHCCCCEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEeec
Confidence 4789999999999999999999999999999999999999876531 2 2222233 489999999999
Q ss_pred EEe
Q 021880 138 TIF 140 (306)
Q Consensus 138 ~~~ 140 (306)
+..
T Consensus 416 ~~~ 418 (575)
T 3b0x_A 416 IHP 418 (575)
T ss_dssp BCT
T ss_pred ccC
Confidence 863
No 14
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=98.88 E-value=3.4e-09 Score=98.06 Aligned_cols=68 Identities=18% Similarity=0.322 Sum_probs=52.9
Q ss_pred eEEceeeeCCCCC-CC-CCHHHHHHHHHHcCCcEEEEecCCCCCC-h---------------------HHHH----HHHH
Q 021880 73 VVFELHSHSNFSD-GY-LSPSKLVERAHCNGVKVLALTDHDTMSG-I---------------------PEAI----ETAR 124 (306)
Q Consensus 73 ~~~dlH~HT~~SD-G~-~sp~eli~~A~~~Gl~~iaITDH~t~~g-~---------------------~~~~----~~~~ 124 (306)
|++|+|+||.+|| |+ .++++++++|++.|++.||||||..... + .+.. ++.+
T Consensus 1 m~~D~H~Ht~~s~~~~~~~~~e~~~~A~~~G~~~i~~TdH~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ 80 (283)
T 3dcp_A 1 MKRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKK 80 (283)
T ss_dssp CCEEEEECCTTCTTSCCCCHHHHHHHHHHTTCCEEEEEEECCCCHHHHHTBCSCTHHHHTTSCCGGGHHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecCCCCcchhhhcccccccccccccchHHHHHHHHHHHHHHHH
Confidence 3689999999997 55 6999999999999999999999987642 1 1211 2223
Q ss_pred hC--CCeEEEEeEEEEEe
Q 021880 125 RF--GMKIIPGVEISTIF 140 (306)
Q Consensus 125 ~~--~i~~i~GiEis~~~ 140 (306)
++ +|.++.|+|+....
T Consensus 81 ~y~~~I~Il~GiE~d~~~ 98 (283)
T 3dcp_A 81 KYASDLLIHIGFEVDYLI 98 (283)
T ss_dssp HTTTTCEEEEEEEEECCT
T ss_pred HccCCCeEEEEEEecccC
Confidence 33 79999999998754
No 15
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=97.43 E-value=0.00015 Score=63.97 Aligned_cols=55 Identities=9% Similarity=-0.090 Sum_probs=41.5
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC-CCChHHHHHHHHhCCCeEEEEeEEEEEe
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT-MSGIPEAIETARRFGMKIIPGVEISTIF 140 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t-~~g~~~~~~~~~~~~i~~i~GiEis~~~ 140 (306)
+++|||+| +.++++.|++. ++.+|||||.. +.+...+..+. .++.+ .|+|++...
T Consensus 8 ~~~D~hvh---------~~e~~~~A~~~-~~~i~itdH~~~~~~~~~~~~l~--~~~~I-~GvEi~~~~ 63 (212)
T 1v77_A 8 KFIEMDIR---------DKEAYELAKEW-FDEVVVSIKFNEEVDKEKLREAR--KEYGK-VAILLSNPK 63 (212)
T ss_dssp CCEEEEEC---------SHHHHHHHHHH-CSEEEEEEEESSCCCHHHHHHHH--HHHSC-EEEEEESCC
T ss_pred EEEEeCcC---------HHHHHHHHHHH-hcEEEEeeccCcccchhhHHHHH--hcCCe-eEEEEecCC
Confidence 38999999 99999999999 99999999954 33433333332 23455 999999854
No 16
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Probab=93.09 E-value=0.16 Score=45.04 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=45.4
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
+..+|.|||-.......+++++++.+.+.|++.+.++-.+ ...+..+.+.+++++..+++++
T Consensus 4 m~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~-~~~~~~~~~l~~~~~~~i~~~~ 65 (272)
T 2y1h_A 4 VGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEH-SGEFEKIMQLSERYNGFVLPCL 65 (272)
T ss_dssp CCEEEEEECTTSGGGTTTHHHHHHHHHHTTEEEEEECCSS-GGGHHHHHHHHHHTTTTEEEEE
T ss_pred CcEEEEeeCCCchhhhcCHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHHCCCCEEEEE
Confidence 4579999998765545689999999999999988776332 3445667777777765555544
No 17
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=90.06 E-value=0.7 Score=40.36 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=42.5
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
+..+|.|||-....-..+++++++.+.+.|++.+.++--+ ...+..+.+.+++.+ .+++++
T Consensus 3 m~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~-~~~~~~~~~l~~~~~-~~~~~~ 63 (259)
T 1zzm_A 3 CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATE-AENFARVLALAENYQ-PLYAAL 63 (259)
T ss_dssp CCEEESCBCTTSTTTTTCHHHHHHHHHHTTEEEEEEECCS-GGGHHHHHHHHHHCT-TEEEEE
T ss_pred ceEEEeeecCCchhhccCHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHhCC-CeEEEE
Confidence 3578999998876555689999999999999987765222 334556666666654 244443
No 18
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=88.56 E-value=0.48 Score=43.22 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=44.5
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCC---CeEEEEeEEE
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG---MKIIPGVEIS 137 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~---i~~i~GiEis 137 (306)
+.+|.|||-...+.....++++++|.+.|++.+.++-= +...+..+.++++++. +.+++.+=|-
T Consensus 2 ~~iD~H~HL~~~~~~~d~~~vl~~a~~~gV~~~v~~g~-~~~~~~~~~~la~~~~~~~~~v~~~~GiH 68 (287)
T 3rcm_A 2 QLIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGT-SLAVSEQALELCQQLDASGAHLFATAGVH 68 (287)
T ss_dssp CEEEEEECTTCGGGTTCHHHHHHHHHHTTEEEEEECCC-SHHHHHHHHHHHHHHCTTSSSEEEEECCC
T ss_pred ceEEEeecCCchhcccCHHHHHHHHHHcCCeEEEEecC-CHHHHHHHHHHHHhCCCCCceEEEEEEEC
Confidence 57899999987765668999999999999999887621 1223455666666543 2455555443
No 19
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=86.31 E-value=0.29 Score=43.93 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=37.5
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhC
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRF 126 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~ 126 (306)
..+|.|||-.+.+ ..++++++|++.|+..+.++ .+...+..+.++++++
T Consensus 2 ~liDtH~HL~~~~---d~~~vl~~a~~~gV~~i~v~--~~~~~~~~~~~la~~~ 50 (254)
T 3gg7_A 2 SLIDFHVHLDLYP---DPVAVARACEERQLTVLSVT--TTPAAWRGTLALAAGR 50 (254)
T ss_dssp CCEEEEECGGGSS---SHHHHHHHHHHTTCEEEECC--SSGGGHHHHHGGGTTC
T ss_pred ceEEEeeCCCCCC---CHHHHHHHHHHCCCcEEEec--CCHHHHHHHHHHHHhC
Confidence 4689999987654 78999999999999987764 3445566666666654
No 20
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=86.20 E-value=0.87 Score=39.87 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=39.6
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
..+|.|||-...+-..+++++++.+.+.|++.+.++--+ ...+..+.+.+++.+ .+++++
T Consensus 4 ~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~-~~~~~~~~~l~~~~~-~i~~~~ 63 (264)
T 1xwy_A 4 RMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTN-LRESQQAQKLARQYS-SCWSTA 63 (264)
T ss_dssp -CEEEEECTTSGGGTTTHHHHHHHHHHTTCCEEEECCCS-HHHHHHHHHHHHHST-TEEEEE
T ss_pred cEEEEeeCCCChhhccCHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCC-CEEEEE
Confidence 478999998765444579999999999999997764221 223444556666654 244443
No 21
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=86.16 E-value=1.1 Score=42.67 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+..++++||+.|+.++ |.|+++
T Consensus 97 ~~k~l~davH~~G~~i~~QL~H~Gr 121 (400)
T 4gbu_A 97 EWTKIFNAIHEKKSFVWVQLAVLGW 121 (400)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCceEEeeeecCc
Confidence 46789999999999877 899875
No 22
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=84.25 E-value=0.79 Score=41.50 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=37.5
Q ss_pred eEEceeeeCCCC--CCC--------CCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCC
Q 021880 73 VVFELHSHSNFS--DGY--------LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~--------~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~ 127 (306)
+.+|.|||-... ++. .+++++++.|.+.|++.+.++-.+ ...+..+.+.+++++
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~~~-~~~~~~~~~la~~~~ 65 (301)
T 2xio_A 2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGN-LQDSKDALHLAQTNG 65 (301)
T ss_dssp CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECCCS-HHHHHHHHHHHTTCT
T ss_pred eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHHCC
Confidence 578999998765 332 589999999999999998887321 223344555555544
No 23
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=83.82 E-value=1.5 Score=38.01 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=40.3
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 74 ~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
.+|.|||........+++++++.+.+.|++.+.+.-.+ ......+.+.+++.+- +++++
T Consensus 2 ~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~p~-~~~~~ 60 (265)
T 2gzx_A 2 LIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFN-KSTIERAMKLIDEYDF-LYGII 60 (265)
T ss_dssp CEEEEECTTSGGGTTTHHHHHHHHHHTTCCEEEEEECS-HHHHHHHHHHHHHCTT-EEEEE
T ss_pred eEEEeeCCCCcccccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHhCCC-EEEEE
Confidence 58999998665544579999999999999987776543 1223344555666553 44444
No 24
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=83.34 E-value=1.6 Score=40.90 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.++++||+.|+.++ |.|+++
T Consensus 80 ~~k~l~~avh~~G~~i~~QL~H~Gr 104 (358)
T 4a3u_A 80 AWLPITQAVHDAGGLIFAQLWHMGR 104 (358)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCceeeccccccc
Confidence 46788999999999877 899885
No 25
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12
Probab=83.11 E-value=1.2 Score=38.70 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=39.2
Q ss_pred eEEceeeeCCCCCC---CCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 73 VVFELHSHSNFSDG---YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 73 ~~~dlH~HT~~SDG---~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
+.+|.|||....+- ..+++++++.+.+.|++.+.+.-.+ ......+.+.+++.+ .+++++
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~p-~~~~~~ 64 (265)
T 1yix_A 2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATT-LPSYLHMRDLVGERD-NVVFSC 64 (265)
T ss_dssp CEEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECCSS-HHHHHHHHHHHCSCT-TEEEEE
T ss_pred cEEEEeeCCCchhhcccccCHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHHCC-CeEEEE
Confidence 57899999865432 5689999999999999998774322 112333445555544 244443
No 26
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=81.69 E-value=2.5 Score=39.85 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.++++||+.|+.++ |.|+++
T Consensus 88 ~~k~l~~avH~~G~~i~~QL~H~Gr 112 (361)
T 3gka_A 88 GWRLVTDAVHAAGGRIFLQLWHVGR 112 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCeEEEeeccCCc
Confidence 46789999999999876 789875
No 27
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=81.07 E-value=2.7 Score=39.62 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.++++||+.|+.++ |.|++|
T Consensus 80 ~~k~l~~avH~~G~~i~~QL~H~Gr 104 (362)
T 4ab4_A 80 GWNNVTKAVHAAGGRIFLQLWHVGR 104 (362)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCEEEEEeccCcc
Confidence 46789999999999876 889875
No 28
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=78.82 E-value=3.2 Score=38.35 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.+++++|+.|+.++ |.|.++
T Consensus 84 ~~~~~~~~vh~~g~~i~~QL~h~Gr 108 (338)
T 1z41_A 84 GFAKLTEQVKEQGSKIGIQLAHAGR 108 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCEEEEEecCCCc
Confidence 36788999999999755 999764
No 29
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=78.81 E-value=1.5 Score=40.69 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=40.7
Q ss_pred CceEEceeeeCCCCCC----------CCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCC
Q 021880 71 NNVVFELHSHSNFSDG----------YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (306)
Q Consensus 71 ~~~~~dlH~HT~~SDG----------~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~ 127 (306)
.+..+|.|||-+...- .-+.++++++|++.|++.+.++== +...+..+.++++++.
T Consensus 25 ~m~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~-~~~~~~~~~~La~~~~ 90 (325)
T 3ipw_A 25 AQQFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSG-CLNDFKKAIEIINKYQ 90 (325)
T ss_dssp CCCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCC-SHHHHHHHHHHHHHHG
T ss_pred CCCeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccC-CHHHHHHHHHHHHHCC
Confidence 3578999999877532 568999999999999998877632 2334555666676653
No 30
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=78.33 E-value=3 Score=38.92 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+..++++||+.|+.++ |.|+++
T Consensus 82 ~~~~~~~~vh~~G~~i~~QL~H~Gr 106 (343)
T 3kru_A 82 ELKKIVDICKANGAVMGIQLAHAGR 106 (343)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHhcCCceEeeehhhccC
Confidence 46789999999999877 788775
No 31
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=77.80 E-value=2.5 Score=40.58 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
+.+..++++||+.|+.++ |.|+++
T Consensus 104 ~~~k~l~~avh~~G~~i~~QL~H~Gr 129 (419)
T 3l5a_A 104 PGLTNMASTMKQHGSLAIIQLAHAGR 129 (419)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEECCGG
T ss_pred HHHHHHHHHHHhcCCEEEEEeccCCC
Confidence 357889999999999877 789885
No 32
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=77.60 E-value=3.1 Score=39.92 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+..++++||+.|+.++ |.|+++
T Consensus 93 ~~k~l~~avH~~G~~i~~QL~H~Gr 117 (407)
T 3tjl_A 93 AWKVITDKVHANGSFVSTQLIFLGR 117 (407)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCEEEEEeccCCC
Confidence 46789999999999877 788775
No 33
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=76.99 E-value=3.5 Score=38.30 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.++++||+.|+.++ |.|+++
T Consensus 84 ~~~~~~~~vh~~G~~i~~QL~H~Gr 108 (340)
T 3gr7_A 84 GLRELVGLVKEHGAAIGIQLAHAGR 108 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhCCCeEEEEeccCCC
Confidence 47889999999999877 788775
No 34
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=76.29 E-value=3.3 Score=38.58 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.++++||+.|+.++ |.|+++
T Consensus 82 ~~~~~~~~vh~~G~~i~~Ql~H~Gr 106 (349)
T 3hgj_A 82 GLKELARRIREAGAVPGIQLAHAGR 106 (349)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhCCCeEEEEeccCCc
Confidence 47889999999999877 788764
No 35
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=75.13 E-value=6.6 Score=37.39 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.++++||+.|+.++ |.|+++
T Consensus 94 ~~k~l~~avh~~G~~i~~QL~H~Gr 118 (402)
T 2hsa_B 94 EWKKIVDVVHAKGAVIFCQLWHVGR 118 (402)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCeEEEEeccCCc
Confidence 46788899999999766 889665
No 36
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=75.07 E-value=3.2 Score=38.89 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.++++||+.|+.++ |.|+++
T Consensus 81 ~~~~~~~~vh~~G~~i~~QL~H~Gr 105 (363)
T 3l5l_A 81 AFVPVVQAIKAAGSVPGIQIAHAGR 105 (363)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCEEEEEeccCCc
Confidence 46789999999999877 788764
No 37
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=74.88 E-value=2 Score=37.97 Aligned_cols=64 Identities=9% Similarity=0.177 Sum_probs=44.2
Q ss_pred CceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEE
Q 021880 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 71 ~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEi 136 (306)
+..++|.|||-.+.+-..+++++++.+.+.|++.+.++--+ ......+.+++++++- +++++=+
T Consensus 10 ~~~~~~~~~hl~~~~~~~~~~~~l~~~~~~GV~~~v~~~~~-~~~~~~~~~l~~~~p~-i~~~~G~ 73 (268)
T 1j6o_A 10 HHHMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVN-LEDSKKSLDLSKTSDR-IFCSVGV 73 (268)
T ss_dssp CCCEEEEEECTTSGGGTTTHHHHHHTTTTTTEEEEEEECSS-HHHHHHHHHHHTTCTT-EEEEECC
T ss_pred cccccccccCCCChhhccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHHCCC-EEEEEee
Confidence 34688999999988777899999999999999877664321 2223445556666552 4544433
No 38
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=73.74 E-value=5.7 Score=37.43 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.+++++|+.|+.++ |.|+++
T Consensus 92 ~~k~l~~avh~~G~~i~~QL~H~Gr 116 (376)
T 1icp_A 92 AWKPIVDAVHAKGGIFFCQIWHVGR 116 (376)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCeEEEEeecCCC
Confidence 46778899999999766 899665
No 39
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=72.48 E-value=4.6 Score=40.79 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+..+++++|+.|+.++ |.|+++
T Consensus 90 ~~~~~~~~vh~~g~~i~~Ql~h~Gr 114 (690)
T 3k30_A 90 ALKRIADAIHEGGGLAGIELAHNGM 114 (690)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCEEEEEccCCcc
Confidence 46789999999999766 899765
No 40
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=71.43 E-value=7.4 Score=36.43 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.+++++|+.|+.++ |.|+++
T Consensus 82 ~~~~l~~~vh~~g~~i~~QL~H~Gr 106 (365)
T 2gou_A 82 GWRIVTEAVHAKGCAIFAQLWHVGR 106 (365)
T ss_dssp HHHHHHHHHHHHSCEEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCeEEEEeecCCC
Confidence 46778899999999765 889664
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=70.07 E-value=4.8 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=15.0
Q ss_pred hhcCCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 19 KQKRGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
|+++++++..+|.+|...|...+.. ..||
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~---~~yp 30 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRR---KQSL 30 (61)
T ss_dssp ----------CCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---CCCc
Confidence 3445556678999999999988853 3555
No 42
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=69.11 E-value=8.4 Score=36.07 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWAL 275 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~~ 275 (306)
.++.+++++|+.|+.++ |.|+++.
T Consensus 82 ~~~~l~~~vh~~g~~i~~QL~H~Gr~ 107 (364)
T 1vyr_A 82 AWKKITAGVHAEDGRIAVQLWHTGRI 107 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTS
T ss_pred HHHHHHHHHHhcCCeEEEEeccCCcc
Confidence 46778899999999755 8887653
No 43
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=67.05 E-value=9.7 Score=35.85 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.+++++|+.|+.++ |.|+++
T Consensus 86 ~~k~l~~avh~~G~~i~~QL~H~Gr 110 (377)
T 2r14_A 86 GWKGVVEAVHAKGGRIALQLWHVGR 110 (377)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred HHHHHHHHHhhcCCeEEEEccCCcc
Confidence 46778899999999755 888664
No 44
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=65.92 E-value=12 Score=27.28 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=21.9
Q ss_pred cCCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 21 KRGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
.+|.++.++|.+|...|+..+. .+.+|
T Consensus 2 ~~g~~r~kfT~~Ql~~Le~~F~---~~~YP 28 (76)
T 2ecc_A 2 SSGSSGKRKTKEQLAILKSFFL---QCQWA 28 (76)
T ss_dssp CCSCCCCCCCHHHHHHHHHHHH---HCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH---HCCCC
Confidence 4788899999999999998885 34566
No 45
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*
Probab=65.49 E-value=5.6 Score=35.43 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=40.9
Q ss_pred eEEceeeeCCCC--CC-----C----CCHH-HH---HHHHHHcCCcEEEEecCCCC-CChHHHHHHHHhCCCeEEEEeEE
Q 021880 73 VVFELHSHSNFS--DG-----Y----LSPS-KL---VERAHCNGVKVLALTDHDTM-SGIPEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG-----~----~sp~-el---i~~A~~~Gl~~iaITDH~t~-~g~~~~~~~~~~~~i~~i~GiEi 136 (306)
-.+|.|||...+ +. . ++.. .+ +++|.+.|+..+...-++.. .....+.+.+++.++.+++++-+
T Consensus 17 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~ 96 (314)
T 2vc7_A 17 GFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGI 96 (314)
T ss_dssp CSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEEB
T ss_pred CCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEeec
Confidence 578999999763 21 1 0121 23 48889999999876666532 33666677777777776655433
No 46
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=63.34 E-value=3.5 Score=39.09 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=25.5
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCc
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~ 103 (306)
-+++||+|- ||+++|+.+++.|+++|++
T Consensus 30 PKvELH~HL---dGsl~p~tl~~LA~~~g~~ 57 (380)
T 4gxw_A 30 PKVELHCHL---LGAVRHDTFVALAQRSGAP 57 (380)
T ss_dssp CEEECCBBG---GGCCCHHHHHHHHHHHTCS
T ss_pred hhHHhhcCC---cCCCCHHHHHHHHHHhCCC
Confidence 369999996 8999999999999999976
No 47
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=62.36 E-value=9.7 Score=38.78 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.++.+++++|+.|+.++ |.|.++
T Consensus 85 ~~~~~~~~vh~~g~~i~~Ql~h~Gr 109 (729)
T 1o94_A 85 NLKAMTDEVHKYGALAGVELWYGGA 109 (729)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCGG
T ss_pred HHHHHHHHHHhCCCeEEEEecCCCc
Confidence 46778899999999766 899654
No 48
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=61.51 E-value=3.8 Score=38.58 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=25.9
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCc
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~ 103 (306)
-+++||+|- ||+++|+-+.+.|+++|++
T Consensus 7 PK~ELH~HL---~Gsl~p~tl~~La~~~~~~ 34 (367)
T 3iar_A 7 PKVELHVHL---DGSIKPETILYYGRRRGIA 34 (367)
T ss_dssp CEEECCBBG---GGSCCHHHHHHHHHHHTCC
T ss_pred CeeEeeecc---cCCCCHHHHHHHHHhcCCC
Confidence 489999998 8999999999999999975
No 49
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=61.33 E-value=9.4 Score=36.46 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=40.4
Q ss_pred ceEEceeeeCCCC--CC--------CCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhC
Q 021880 72 NVVFELHSHSNFS--DG--------YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRF 126 (306)
Q Consensus 72 ~~~~dlH~HT~~S--DG--------~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~ 126 (306)
+.++|.|||-+.+ +| .-..++++++|.+.|++.+.+|== ++.....+.++++++
T Consensus 12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g~-~l~~s~~~~~La~~~ 75 (401)
T 3e2v_A 12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGS-SIAESQSAIELVSSV 75 (401)
T ss_dssp CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCC-SHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEecC-CHHHHHHHHHHHHHC
Confidence 4689999998875 33 257899999999999999988732 233455666777765
No 50
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=61.00 E-value=4.1 Score=37.69 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=25.9
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCc
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~ 103 (306)
-+++||+|- ||+++|+.+.+.|+++|++
T Consensus 11 PK~ELH~Hl---~Gsl~~~t~~~la~~~~~~ 38 (326)
T 3pao_A 11 PKAELHLHL---EGTLEPELLFALAERNRIA 38 (326)
T ss_dssp CEEECSBBG---GGGCCHHHHHHHHHHTTCC
T ss_pred CceEEEecc---cCCCCHHHHHHHHHhcCCC
Confidence 489999998 8999999999999999986
No 51
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=60.73 E-value=4.1 Score=37.96 Aligned_cols=28 Identities=39% Similarity=0.576 Sum_probs=26.1
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCc
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~ 103 (306)
-+++||+|- ||+++|+-+.+.|+++|++
T Consensus 14 PK~ELH~Hl---~Gsl~p~tl~~la~~~~~~ 41 (343)
T 3rys_A 14 PVAELHLHI---EGTLQPELIFALAERNGIE 41 (343)
T ss_dssp CEEECSBBG---GGGCCHHHHHHHHHHTTCC
T ss_pred CceeeEecC---ccCCCHHHHHHHHHhcCCC
Confidence 589999998 8999999999999999986
No 52
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=60.57 E-value=8.4 Score=38.66 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 021880 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaV--LAHP~~ 274 (306)
.+..+++++|+.|+.++ |.|+++
T Consensus 82 ~~~~~~~~vh~~g~~i~~Ql~h~Gr 106 (671)
T 1ps9_A 82 HHRTITEAVHQEGGKIALQILHTGR 106 (671)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCGG
T ss_pred HHHHHHHHHHhcCCEEEEEeccCCc
Confidence 46788999999999755 899754
No 53
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}
Probab=58.85 E-value=16 Score=31.59 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=28.9
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
+.+|.|+|... .++++++.+.+.|++...+.-...
T Consensus 3 m~iD~H~Hl~~-----~~~~~l~~m~~~Gv~~~v~~~~~~ 37 (272)
T 3cjp_A 3 LIIDGHTHVIL-----PVEKHIKIMDEAGVDKTILFSTSI 37 (272)
T ss_dssp CCEEEEEECCS-----SHHHHHHHHHHHTCCEEEEECCSC
T ss_pred eEEEehhhcCC-----CHHHHHHHHHHcCCCEEEEeCCCC
Confidence 57899999854 368999999999999988876543
No 54
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=58.04 E-value=9.3 Score=34.02 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=29.8
Q ss_pred eEEceeeeCCCCCC------------CCCHHHHHHHHHHcCCcEEEEe
Q 021880 73 VVFELHSHSNFSDG------------YLSPSKLVERAHCNGVKVLALT 108 (306)
Q Consensus 73 ~~~dlH~HT~~SDG------------~~sp~eli~~A~~~Gl~~iaIT 108 (306)
+.+|.|+|-...+- ..+++++++.+.+.|++.+.+.
T Consensus 26 ~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v 73 (294)
T 4i6k_A 26 NCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLV 73 (294)
T ss_dssp CSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEE
T ss_pred CceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEe
Confidence 67999999864321 4689999999999999998887
No 55
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=54.61 E-value=35 Score=29.35 Aligned_cols=53 Identities=4% Similarity=-0.134 Sum_probs=40.6
Q ss_pred eeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEE
Q 021880 78 HSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (306)
Q Consensus 78 H~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i 131 (306)
+.-+++.-+.+++++.++.+++.|++.|-+..-.. ....++.+.+++.|+.+.
T Consensus 13 ~~~~~~~f~~~~~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~l~~~gl~~~ 65 (269)
T 3ngf_A 13 AANLSTMFNEVPFLERFRLAAEAGFGGVEFLFPYD-FDADVIARELKQHNLTQV 65 (269)
T ss_dssp EEETTTSCTTSCHHHHHHHHHHTTCSEEECSCCTT-SCHHHHHHHHHHTTCEEE
T ss_pred eeechhhhccCCHHHHHHHHHHcCCCEEEecCCcc-CCHHHHHHHHHHcCCcEE
Confidence 33344556789999999999999999999975322 346777888888998764
No 56
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=53.98 E-value=16 Score=33.38 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=37.5
Q ss_pred eEEceeeeCCCCCCC------------CCHHH-H---HHHHHHcCCcEEEEecCC-CCCChHHHHHHHHhCCCeEEE
Q 021880 73 VVFELHSHSNFSDGY------------LSPSK-L---VERAHCNGVKVLALTDHD-TMSGIPEAIETARRFGMKIIP 132 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~------------~sp~e-l---i~~A~~~Gl~~iaITDH~-t~~g~~~~~~~~~~~~i~~i~ 132 (306)
-.+|.|||-.+.-+. -++++ + ++.|++.|+..+...=-+ ....+..+.+.+++.++.++.
T Consensus 16 GliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~~~~~~~~~~~~~~la~~~~~~i~~ 92 (330)
T 2ob3_A 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVA 92 (330)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEEC
T ss_pred CCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCCCCCcCCCHHHHHHHHHHhCCcEEE
Confidence 478999998763111 12334 3 788999999886543222 224566777777777755543
No 57
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3
Probab=47.02 E-value=16 Score=31.65 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=40.5
Q ss_pred eEEceeeeCCCCC---------CCCC---HHHHHHHHHHcCCcEEEEecCCCC-CChHHHHHHHHhCCCeEEEEeEE
Q 021880 73 VVFELHSHSNFSD---------GYLS---PSKLVERAHCNGVKVLALTDHDTM-SGIPEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 73 ~~~dlH~HT~~SD---------G~~s---p~eli~~A~~~Gl~~iaITDH~t~-~g~~~~~~~~~~~~i~~i~GiEi 136 (306)
..+|.|+|-.... ...+ +.+.+++|.+.|+..+..+-++.. ..+..+.+.+++.++.+++++-+
T Consensus 6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~ 82 (291)
T 1bf6_A 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGY 82 (291)
T ss_dssp SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECC
T ss_pred ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecCCCcCCCCHHHHHHHHHhcCCeEEEeecc
Confidence 5789999975321 1122 233667788999998866554322 23666677777777777766544
No 58
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} PDB: 3hpa_A
Probab=44.50 E-value=43 Score=31.23 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=38.5
Q ss_pred eEEceeeeCCCC--CCC---------------------CCHHHH-------HHHHHHcCCcEEEEecCC----CCCChHH
Q 021880 73 VVFELHSHSNFS--DGY---------------------LSPSKL-------VERAHCNGVKVLALTDHD----TMSGIPE 118 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~---------------------~sp~el-------i~~A~~~Gl~~iaITDH~----t~~g~~~ 118 (306)
-++|.|+|...+ .|. ++++++ +..+.+.|+..+ -||. ....+..
T Consensus 88 GlID~H~Hl~~~~~rg~~~~~~~~l~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv--~d~~~~~~~~~~~~~ 165 (479)
T 3h4u_A 88 GLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTS--SDHLYIYPNGSRLDD 165 (479)
T ss_dssp CEEECCCCGGGGGSCSCTTTTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEE--ECCBCCCCTTCCHHH
T ss_pred ceeecccccchhhhccccccCCCCHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHhCCeEEE--EECccccCCcchHHH
Confidence 388999998765 221 466654 455667888655 4542 2233555
Q ss_pred HHHHHHhCCCeEEEEeEE
Q 021880 119 AIETARRFGMKIIPGVEI 136 (306)
Q Consensus 119 ~~~~~~~~~i~~i~GiEi 136 (306)
+.+.+++.|+..+.+...
T Consensus 166 ~~~~~~~~g~r~~~~~~~ 183 (479)
T 3h4u_A 166 SIGAAQRIGMRFHASRGA 183 (479)
T ss_dssp HHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEeee
Confidence 667777788887665443
No 59
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=44.50 E-value=14 Score=34.51 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=25.2
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCc
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~ 103 (306)
-+++||+|- ||+++|+-+++.|+++|++
T Consensus 45 PK~eLH~Hl---~gsl~~~~l~~la~~~~~~ 72 (371)
T 2pgf_A 45 PKCELHCHL---DLCFSADFFVSCIRKYNLQ 72 (371)
T ss_dssp CEEEEEEEG---GGCCCHHHHHHHHHHTTCC
T ss_pred cHhhheeCC---ccCCCHHHHHHHHHHcCCC
Confidence 367999997 8999999999999999974
No 60
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=41.60 E-value=62 Score=22.16 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|..++.. +.+|
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp 32 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYP 32 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCc
Confidence 3445667999999999988854 4556
No 61
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Probab=40.73 E-value=20 Score=31.38 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=28.3
Q ss_pred eEEceeeeCCCCC------------------CCCCHHHHHHHHHHcCCcEEEEe
Q 021880 73 VVFELHSHSNFSD------------------GYLSPSKLVERAHCNGVKVLALT 108 (306)
Q Consensus 73 ~~~dlH~HT~~SD------------------G~~sp~eli~~A~~~Gl~~iaIT 108 (306)
..+|.|+|-...+ ...+++++++.+.+.|++...++
T Consensus 2 ~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~ 55 (307)
T 2f6k_A 2 SKIDFHTHYLPTSYVEALKRHVPGDPDGWPTPEWTPQLTLNFMRDNDISYSILS 55 (307)
T ss_dssp CEEEEEEECCCHHHHHHHHHHCCSSGGGSCCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CeEEEecCcCCHHHHHHHHHhccCCcccCcCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4789999964321 23789999999999999987665
No 62
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=40.61 E-value=56 Score=22.14 Aligned_cols=26 Identities=4% Similarity=-0.019 Sum_probs=19.8
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|..++.. +.+|
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp 28 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRP 28 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCc
Confidence 4456778999999999988854 4556
No 63
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=40.49 E-value=70 Score=27.26 Aligned_cols=46 Identities=20% Similarity=0.162 Sum_probs=33.0
Q ss_pred cCCCCCHHHHHHHHHHcCCEEEEeCCCCC---CChHHHHHHHHH-cCCCEE
Q 021880 247 TGSEPLAEVAVQLIHRTGGLAVLAHPWAL---KNPAAIIRKLKD-VGLHGL 293 (306)
Q Consensus 247 ~~~~~~~eevI~~I~~aGGiaVLAHP~~~---~~~~~li~~l~~-~GldGi 293 (306)
.++...++++++.++++|=.+++ ||+.. .....-++.|++ .+.|||
T Consensus 37 ~g~i~~l~~~v~~lk~~~K~v~V-h~Dli~Gls~d~~ai~fL~~~~~pdGI 86 (192)
T 3kts_A 37 ETHVAQLKALVKYAQAGGKKVLL-HADLVNGLKNDDYAIDFLCTEICPDGI 86 (192)
T ss_dssp SEETTTHHHHHHHHHHTTCEEEE-EGGGEETCCCSHHHHHHHHHTTCCSEE
T ss_pred cCcHHHHHHHHHHHHHcCCeEEE-ecCchhccCCcHHHHHHHHhCCCCCEE
Confidence 34567899999999999988777 99742 334455666665 367776
No 64
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=39.50 E-value=42 Score=29.02 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEE
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i 131 (306)
.++++.++.+++.|++.|-+.-.+.-....++.+.+++.|+.+.
T Consensus 38 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gl~v~ 81 (287)
T 3kws_A 38 ESLNEKLDFMEKLGVVGFEPGGGGLAGRVNEIKQALNGRNIKVS 81 (287)
T ss_dssp SSHHHHHHHHHHTTCCEEECBSTTCGGGHHHHHHHHTTSSCEEC
T ss_pred CCHHHHHHHHHHcCCCEEEecCCchHHHHHHHHHHHHHcCCeEE
Confidence 69999999999999999999877544456677777888888753
No 65
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=39.24 E-value=57 Score=23.17 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=19.9
Q ss_pred cCCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 21 KRGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++++..+|.+|...|..++.. +.+|
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp 43 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYP 43 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCC
Confidence 34455678999999999988854 4555
No 66
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.28 E-value=66 Score=22.08 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=18.7
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|..++.. +.||
T Consensus 8 rr~Rt~ft~~q~~~Le~~F~~---~~yp 32 (70)
T 2dmu_A 8 RRHRTIFTDEQLEALENLFQE---TKYP 32 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCC
Confidence 345567999999999988854 4556
No 67
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.86 E-value=63 Score=22.90 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=19.0
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|..++.. ..+|
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp 42 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYL 42 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCC
Confidence 3445667999999999988854 4455
No 68
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=35.74 E-value=5.6 Score=35.26 Aligned_cols=27 Identities=37% Similarity=0.651 Sum_probs=7.7
Q ss_pred hhhhhhhHHhhhhhcCCCCCCCCCHHH
Q 021880 7 VEKRSKDKKKKKKQKRGGGKKKMTAEQ 33 (306)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (306)
..+++++||||+++++++.+++++.++
T Consensus 113 LKKrdKKkkKk~~~~~k~~~~~~~~~~ 139 (232)
T 1914_A 113 LKKRDKKNKSKKSKPAQGGEQKLISEE 139 (232)
T ss_dssp SBCC-----------CCEEEEEC----
T ss_pred cCccccchhhhhhhhhhhhhhhhhhhh
Confidence 455666666666666666667776654
No 69
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=35.13 E-value=95 Score=26.20 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCC------CCCChHHHHHHHHhCCCeEE
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHD------TMSGIPEAIETARRFGMKII 131 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~------t~~g~~~~~~~~~~~~i~~i 131 (306)
+.+++++.++.+++.|++.|-+.... .-....++.+++++.|+.+.
T Consensus 17 ~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~ 68 (272)
T 2q02_A 17 PGLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIV 68 (272)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEE
Confidence 35789999999999999999997421 12346677788888888753
No 70
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=35.05 E-value=89 Score=21.41 Aligned_cols=25 Identities=16% Similarity=0.334 Sum_probs=18.6
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|..++.. +.+|
T Consensus 8 ~r~R~~ft~~q~~~Le~~F~~---~~yp 32 (70)
T 2e1o_A 8 KGGQVRFSNDQTIELEKKFET---QKYL 32 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHc---CCCc
Confidence 345667999999999988843 4555
No 71
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=34.57 E-value=18 Score=30.24 Aligned_cols=29 Identities=14% Similarity=-0.161 Sum_probs=23.1
Q ss_pred CCCC-HHHHHHHHHHcCCcEEEEec-CCCCC
Q 021880 86 GYLS-PSKLVERAHCNGVKVLALTD-HDTMS 114 (306)
Q Consensus 86 G~~s-p~eli~~A~~~Gl~~iaITD-H~t~~ 114 (306)
|.-. |-+++.+|+++|+++||||- ..+-.
T Consensus 88 g~n~~~ie~A~~ake~G~~vIaITs~~~~~~ 118 (170)
T 3jx9_A 88 TERSDLLASLARYDAWHTPYSIITLGDVTET 118 (170)
T ss_dssp SCCHHHHHHHHHHHHHTCCEEEEESSCCCTT
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeCcchhcc
Confidence 4433 78999999999999999998 54433
No 72
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=34.28 E-value=71 Score=25.91 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCC--ChHHHHHHHHhC---CCeEEEE
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF---GMKIIPG 133 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~---~i~~i~G 133 (306)
....+|+++++.|++.+.+.|+++=-.+.. ...++.+.+++. +++++.|
T Consensus 53 G~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 53 GLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp CSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 445799999999999999999998554321 233444455554 3666665
No 73
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=34.22 E-value=87 Score=21.62 Aligned_cols=29 Identities=3% Similarity=-0.202 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|...+..-....||
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp 35 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYP 35 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCC
Confidence 34455679999999988777542234455
No 74
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.31 E-value=93 Score=21.29 Aligned_cols=25 Identities=12% Similarity=-0.094 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++.+..+|.+|...|..++.. +.+|
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp 32 (70)
T 2djn_A 8 RKPRTIYSSFQLAALQRRFQK---TQYL 32 (70)
T ss_dssp CCSSCSSCHHHHHHHHHHHTT---CSSC
T ss_pred CCCCCCCCHHHHHHHHHHHcC---CCCC
Confidence 445567999999999988843 4455
No 75
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A
Probab=33.19 E-value=76 Score=29.21 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEE
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis 137 (306)
|--.+|+++++..+.+|++.|=|-|-| +.+..+++..||+++.|+-.+
T Consensus 12 ~nlp~p~~Vv~llks~gi~~VRlY~~D-----~~vL~Al~~sgi~V~lGV~n~ 59 (323)
T 3ur8_A 12 NNLPSDQDVIKLYNANNIKKMRIYYPH-----TNVFNALKGSNIEIILDVPNQ 59 (323)
T ss_dssp SSCCCHHHHHHHHHHTTCCEEEESSCC-----HHHHHHHTTCCCEEEEEECGG
T ss_pred CCCCCHHHHHHHHHhCCCCeEEecCCC-----HHHHHHHHhcCCeEEEecccc
Confidence 334689999999999999999998765 677777788999999999753
No 76
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=32.52 E-value=68 Score=27.01 Aligned_cols=45 Identities=4% Similarity=-0.080 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~ 132 (306)
..++++.++.+++.|++.|-+.-... ....++.+.+++.|+.+..
T Consensus 14 ~~~~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~l~~~gl~~~~ 58 (260)
T 1k77_A 14 EVPFIERFAAARKAGFDAVEFLFPYN-YSTLQIQKQLEQNHLTLAL 58 (260)
T ss_dssp TSCGGGHHHHHHHHTCSEEECSCCTT-SCHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCEEEecCCCC-CCHHHHHHHHHHcCCceEE
Confidence 57899999999999999999874322 2356777888889987653
No 77
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*
Probab=32.09 E-value=83 Score=28.85 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=38.8
Q ss_pred eEEceeeeCCCC--CC---------------------CCCHHH-------HHHHHHHcCCcEEEEecCCCCCChHHHHHH
Q 021880 73 VVFELHSHSNFS--DG---------------------YLSPSK-------LVERAHCNGVKVLALTDHDTMSGIPEAIET 122 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG---------------------~~sp~e-------li~~A~~~Gl~~iaITDH~t~~g~~~~~~~ 122 (306)
-++|.|+|...+ .| .+++++ .+..+.+.|+..+. |+. .....+.+.
T Consensus 65 GlID~H~Hl~~~~~~g~~~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~--~~~~~~~~~ 140 (447)
T 4f0r_A 65 GLINLHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTIN--DMY--FYNAAVARA 140 (447)
T ss_dssp CEEEEEECGGGGGGTTSSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEE--ECB--SCHHHHHHH
T ss_pred CccchhhChhhHhhccCCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEE--Ecc--cCHHHHHHH
Confidence 489999998543 22 256664 34556778987765 432 223455566
Q ss_pred HHhCCCeEEEEeEEE
Q 021880 123 ARRFGMKIIPGVEIS 137 (306)
Q Consensus 123 ~~~~~i~~i~GiEis 137 (306)
+.+.++..+.+..+.
T Consensus 141 ~~~~g~r~~~~~~~~ 155 (447)
T 4f0r_A 141 GLASGMRTFVGCSIL 155 (447)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCeEEEEchhc
Confidence 677888877776654
No 78
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A
Probab=31.80 E-value=17 Score=36.30 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=39.0
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC------CChHHHHHHHHhCCCeEEEEe
Q 021880 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTM------SGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 74 ~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~------~g~~~~~~~~~~~~i~~i~Gi 134 (306)
++|.|+|... +..+++++.+.|...|+..+. +|.++. .++..+.+.+++.++.+...+
T Consensus 91 ~ID~H~Hl~~--~~~~~~~~~~~al~~GvTtvv-~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~~ 154 (608)
T 3nqb_A 91 LIDTHMHIES--SMITPAAYAAAVVARGVTTIV-WDPHEFGNVHGVDGVRWAAKAIENLPLRAILLA 154 (608)
T ss_dssp EEEEEECGGG--GTSCHHHHHHHHHTTTEEEEE-ECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEEE
T ss_pred eEecccCccc--ccCCHHHHHHHHHhCCeEEEE-cCCccccccCCHHHHHHHHHHhhhcCcEEEEec
Confidence 7899999854 446899999999999998875 344432 233344455555666555443
No 79
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=31.77 E-value=64 Score=27.80 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCC--C--CChHHHHHHHHhCCCeEEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDT--M--SGIPEAIETARRFGMKIIP 132 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t--~--~g~~~~~~~~~~~~i~~i~ 132 (306)
..++++.++.+++.|++.|-+....- . ....++.+.+++.|+.+..
T Consensus 16 ~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 65 (294)
T 3vni_A 16 EADYKYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTV 65 (294)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CcCHHHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEE
Confidence 35899999999999999999985431 1 1234566777889988654
No 80
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=31.26 E-value=56 Score=31.36 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEec---------------CCCCC------ChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTD---------------HDTMS------GIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITD---------------H~t~~------g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
--.+.|++.++.|++.|++.+.+|= |+.+. =+.++.++|++.||+ .|+=+|.
T Consensus 75 p~~fDp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~Glk--~GlY~S~ 147 (450)
T 2wvv_A 75 PTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGID--VHFYFSV 147 (450)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCE--EEEEEES
T ss_pred cccCCHHHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHcCCe--EEEEecH
Confidence 3468999999999999999999873 22221 145778888888876 4555554
No 81
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=31.13 E-value=50 Score=28.81 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|++| +.| ++|...++ +.+..+.++|+|||-.-+|.
T Consensus 226 ~~~v~~~~~~G-l~v--~~wTvn~~-~~~~~l~~~GvdgIiTD~P~ 267 (272)
T 3ch0_A 226 KKDIDAAHKLG-MRV--IPWTVNTK-EEIETLISLGVDGIITDYPD 267 (272)
T ss_dssp HHHHHHHHHTT-CEE--CCBCCCSH-HHHHHHHHHTCSEEEESCGG
T ss_pred HHHHHHHHHcC-CEE--EEeccCCH-HHHHHHHHcCCCEEEeCCHH
Confidence 57899999987 655 55555554 56788999999999887774
No 82
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.96 E-value=74 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=16.8
Q ss_pred CCCCCCCCCHHHHhHHHhhhh
Q 021880 22 RGGGKKKMTAEQSLAFNSVTE 42 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ 42 (306)
+++.+..+|.+|...|..++.
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~ 29 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQ 29 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 345567899999999998885
No 83
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=30.78 E-value=93 Score=22.36 Aligned_cols=27 Identities=11% Similarity=-0.114 Sum_probs=18.5
Q ss_pred CCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 24 GGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++..+|.+|...|...+..-.-..||
T Consensus 29 k~r~~ft~~q~~~Le~~f~~~~~~~yP 55 (87)
T 1mnm_C 29 YRGHRFTKENVRILESWFAKNIENPYL 55 (87)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCc
Confidence 346689999999988777542224555
No 84
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV}
Probab=30.32 E-value=93 Score=29.07 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=38.9
Q ss_pred eEEceeeeCCCC--CC---------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCChHHHHHH
Q 021880 73 VVFELHSHSNFS--DG---------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIET 122 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG---------------------~~sp~el-------i~~A~~~Gl~~iaITDH~t~~g~~~~~~~ 122 (306)
-++|.|+|...+ .| .++++++ +..+.+.|+..+. |+. .....+.+.
T Consensus 74 GlID~H~Hl~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~--~~~~~~~~a 149 (472)
T 4dzh_A 74 GLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVN--ENY--FFADVQAAV 149 (472)
T ss_dssp CEEEEEECGGGGGGTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEE--EEC--SCHHHHHHH
T ss_pred CccccccChhhHHhccccCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEE--Ecc--cCHHHHHHH
Confidence 388999998654 12 2455543 3347788987664 554 223455666
Q ss_pred HHhCCCeEEEEeEEE
Q 021880 123 ARRFGMKIIPGVEIS 137 (306)
Q Consensus 123 ~~~~~i~~i~GiEis 137 (306)
+.+.|+..+.+..+.
T Consensus 150 ~~~~g~r~~~~~~~~ 164 (472)
T 4dzh_A 150 YKQHGFRALVGAVII 164 (472)
T ss_dssp HHHTTCEEEEEEEEC
T ss_pred HHHhCCeEEEEeccc
Confidence 777898887776654
No 85
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=30.00 E-value=58 Score=27.69 Aligned_cols=56 Identities=5% Similarity=-0.034 Sum_probs=38.2
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----ChHHHHHHHHhCCCeEE
Q 021880 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS-----GIPEAIETARRFGMKII 131 (306)
Q Consensus 73 ~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~-----g~~~~~~~~~~~~i~~i 131 (306)
+++=++..|. ..+++++.++.+++.|++.|-+...+-.. ...++.+.+++.|+.+.
T Consensus 18 ~klg~~~~~~---~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 78 (257)
T 3lmz_A 18 FHLGMAGYTF---VNFDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGY 78 (257)
T ss_dssp SEEEECGGGG---TTSCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEEEEEee---cCCCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 4444444333 23699999999999999999998653111 12456677788998764
No 86
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Probab=29.99 E-value=75 Score=29.23 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=38.5
Q ss_pred eEEceeeeCCCC--CC---------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCChHHHHHH
Q 021880 73 VVFELHSHSNFS--DG---------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIET 122 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG---------------------~~sp~el-------i~~A~~~Gl~~iaITDH~t~~g~~~~~~~ 122 (306)
-++|.|+|...+ .| .++++++ +..+.+.|+..+. |+. .....+.+.
T Consensus 67 G~ID~H~H~~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~--d~~--~~~~~~~~a 142 (451)
T 4dyk_A 67 GLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFS--DMY--FYPQAICGV 142 (451)
T ss_dssp CEEECCCCGGGGGGTTSSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEE--EEC--SCHHHHHHH
T ss_pred cccchhhChhhHHhccCCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEE--Ecc--cCHHHHHHH
Confidence 488999999443 11 2566643 4455588987664 552 223455566
Q ss_pred HHhCCCeEEEEeEEE
Q 021880 123 ARRFGMKIIPGVEIS 137 (306)
Q Consensus 123 ~~~~~i~~i~GiEis 137 (306)
+.+.|+..+.+..+.
T Consensus 143 ~~~~g~r~~~~~~~~ 157 (451)
T 4dyk_A 143 VHDSGVRAQVAIPVL 157 (451)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCeEEEEchhh
Confidence 677888887777664
No 87
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.93 E-value=93 Score=21.84 Aligned_cols=26 Identities=8% Similarity=-0.006 Sum_probs=18.8
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|..++.. ..+|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp 32 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNP 32 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCC
Confidence 3445668999999999888753 3455
No 88
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=29.89 E-value=77 Score=26.12 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
.++++ ++.|.+.|.+++ +..... .++.+.+++.|+.+++|+
T Consensus 71 ~~~~~-~~~a~~~Gad~i-v~~~~~----~~~~~~~~~~g~~vi~g~ 111 (205)
T 1wa3_A 71 TSVEQ-CRKAVESGAEFI-VSPHLD----EEISQFCKEKGVFYMPGV 111 (205)
T ss_dssp CSHHH-HHHHHHHTCSEE-ECSSCC----HHHHHHHHHHTCEEECEE
T ss_pred CCHHH-HHHHHHcCCCEE-EcCCCC----HHHHHHHHHcCCcEECCc
Confidence 36776 588888999999 654322 567788888999999976
No 89
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=29.88 E-value=62 Score=24.97 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCCCHHHHhHHHhhhhhhccCCCCCCCCCCCccccccccccCCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcCC
Q 021880 27 KKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGV 102 (306)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl 102 (306)
..+|.++...++.++..++.+ .||.++.+++.......|+
T Consensus 17 ~~l~~~~~~~l~~~F~~~D~d------------------------------------~~G~i~~~el~~~l~~~g~ 56 (166)
T 2mys_B 17 SMFDETEIEDFKEAFTVIDQN------------------------------------ADGIIDKDDLRETFAAMGR 56 (166)
T ss_pred hhCCHHHHHHHHHHHHHHCCC------------------------------------CCCcCCHHHHHHHHHHhCC
Confidence 477888888888888665322 3788899999888888765
No 90
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=29.87 E-value=40 Score=29.26 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|++| +.|.++ ...+ .+.+..+.++|+|||-.-+|.
T Consensus 200 ~~~v~~~~~~G-~~v~~W--Tvn~-~~~~~~l~~~GVdgIiTD~P~ 241 (252)
T 3qvq_A 200 VQQVSDIKAAG-YKVLAF--TIND-ESLALKLYNQGLDAVFSDYPQ 241 (252)
T ss_dssp HHHHHHHHHTT-CEEEEE--CCCC-HHHHHHHHHTTCCEEEESSHH
T ss_pred HHHHHHHHHCC-CEEEEE--cCCC-HHHHHHHHHcCCCEEEeCCHH
Confidence 47889999885 777665 4444 467899999999999887763
No 91
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=29.86 E-value=8.2 Score=31.77 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHHcCCc
Q 021880 84 SDGYLSPSKLVERAHCNGVK 103 (306)
Q Consensus 84 SDG~~sp~eli~~A~~~Gl~ 103 (306)
.||.++.+++.......|+.
T Consensus 70 ~~G~i~~~el~~~l~~lg~~ 89 (196)
T 3dtp_E 70 KDGFISKNDIRATFDSLGRL 89 (196)
T ss_dssp CSSBCCHHHHHHHHHTTSCC
T ss_pred CCCcCCHHHHHHHHHHhCCC
Confidence 47899999998888877654
No 92
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.85 E-value=94 Score=21.27 Aligned_cols=25 Identities=4% Similarity=-0.140 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|..++.. +.+|
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp 32 (70)
T 2cra_A 8 RKKRIPYSKGQLRELEREYAA---NKFI 32 (70)
T ss_dssp CCSCCCSCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCcCCHHHHHHHHHHHHh---cCCC
Confidence 344567899999999988853 4555
No 93
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.76 E-value=1.1e+02 Score=21.43 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=19.2
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
.++++..+|.+|...|..++.. ..+|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp 32 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYP 32 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCC
Confidence 3445667999999999988854 4555
No 94
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=29.72 E-value=54 Score=26.90 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCE---EEEeCCCCCC-ChHHHHHHHHHcCCCEEEEecC
Q 021880 253 AEVAVQLIHRTGGL---AVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 253 ~eevI~~I~~aGGi---aVLAHP~~~~-~~~~li~~l~~~GldGiEv~~~ 298 (306)
=.+.|+.||++.+- .|+--|+.|. .+..+-+.++..++.=|||.=|
T Consensus 52 EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiS 101 (149)
T 2uyg_A 52 EGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLT 101 (149)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESS
T ss_pred HHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEec
Confidence 35799999999654 7888999884 4578999999999999999765
No 95
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}
Probab=29.47 E-value=1.2e+02 Score=28.11 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=38.7
Q ss_pred eEEceeeeCCCC--CC---------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCChHHHHHH
Q 021880 73 VVFELHSHSNFS--DG---------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIET 122 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG---------------------~~sp~el-------i~~A~~~Gl~~iaITDH~t~~g~~~~~~~ 122 (306)
-++|.|+|...+ .| ..+++++ +..+.+.|+..+. |+. .....+.+.
T Consensus 87 GlID~H~H~~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~--d~~--~~~~~~~~~ 162 (468)
T 3lnp_A 87 GWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFA--DMY--FYPQQSGEA 162 (468)
T ss_dssp CEEECSCCGGGGGGTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEE--ECC--SCHHHHHHH
T ss_pred CeechhhChhhhhhccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEE--Ecc--cCHHHHHHH
Confidence 388999999443 22 2666654 4456788987664 552 223455566
Q ss_pred HHhCCCeEEEEeEEE
Q 021880 123 ARRFGMKIIPGVEIS 137 (306)
Q Consensus 123 ~~~~~i~~i~GiEis 137 (306)
+.+.++..+.+..+.
T Consensus 163 ~~~~g~r~~~~~~~~ 177 (468)
T 3lnp_A 163 ALAAGIRAVCFAPVL 177 (468)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCeEEEecccc
Confidence 677888877776654
No 96
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=29.04 E-value=1.1e+02 Score=20.17 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=18.1
Q ss_pred CCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 25 GKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++..+|.+|...|...+..-....+|
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp 26 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYL 26 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCc
Confidence 35688999999988877543224555
No 97
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=29.03 E-value=93 Score=24.37 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.3
Q ss_pred CCCCCCHHHHhHHHhhhhhhccCCCCCCCCCCCccccccccccCCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCc
Q 021880 25 GKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (306)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~ 103 (306)
++.++|.+|...|+.++.-++.+ .||.++.+++....+..|..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d------------------------------------~dG~I~~~El~~~l~~lg~~ 48 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQD------------------------------------RDGFIGMEDLKDMFSSLGRV 48 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCS------------------------------------TTSCCCHHHHHHHHHHTTSC
T ss_pred cccCCCHHHHHHHHHHHHHHCCC------------------------------------CCCeEcHHHHHHHHHHcCCC
Confidence 45679999999999999776433 37889999999988888864
No 98
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=28.77 E-value=70 Score=26.99 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=35.9
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKI 130 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~ 130 (306)
...+|+|.|. .|+..++.+.+.|.+.+.+-+-.......++.+.+++.|+.+
T Consensus 61 ~i~ld~~l~d-------~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~ 112 (218)
T 3jr2_A 61 ILVCDMKTTD-------GGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEI 112 (218)
T ss_dssp EEEEEEEECS-------CHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEE
T ss_pred cEEEEEeecc-------cHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCcc
Confidence 4677888874 477899999999999998844322112345666677778765
No 99
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=28.74 E-value=82 Score=26.91 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC----ChHHHHHHHHhCCCeEEE
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDTMS----GIPEAIETARRFGMKIIP 132 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t~~----g~~~~~~~~~~~~i~~i~ 132 (306)
.++++.++.+++.|++.|-+.-.+... ...++.+.+++.|+.+..
T Consensus 17 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 65 (290)
T 2qul_A 17 VDFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMC 65 (290)
T ss_dssp CCHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEE
Confidence 579999999999999999998654322 244566777888988665
No 100
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus}
Probab=28.68 E-value=60 Score=29.49 Aligned_cols=36 Identities=17% Similarity=-0.021 Sum_probs=27.4
Q ss_pred eEEceeeeCCCCC--CCCCHHHHHHHHHHcCCcEEEEe
Q 021880 73 VVFELHSHSNFSD--GYLSPSKLVERAHCNGVKVLALT 108 (306)
Q Consensus 73 ~~~dlH~HT~~SD--G~~sp~eli~~A~~~Gl~~iaIT 108 (306)
-++|.|+|...+. -..++....+.+.+.|+..+..+
T Consensus 50 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~ 87 (426)
T 2z00_A 50 GFLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSM 87 (426)
T ss_dssp CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEEC
T ss_pred CEEEeccccCCCCCCchHHHHHHHHHHHhCCccEEEec
Confidence 3889999987641 23457788899999999887664
No 101
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=28.50 E-value=72 Score=21.27 Aligned_cols=25 Identities=8% Similarity=-0.053 Sum_probs=16.6
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|..++.. +.||
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~---~~yp 28 (62)
T 2vi6_A 4 QKMRTVFSQAQLCALKDRFQK---QKYL 28 (62)
T ss_dssp ----CCCCHHHHHHHHHHHHH---CSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCC
Confidence 345677999999999988853 4555
No 102
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=28.17 E-value=86 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=18.3
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|...+.. +.+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp 28 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYI 28 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCc
Confidence 3455678999999999988853 4555
No 103
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=28.11 E-value=39 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
+-..-++++.|+++|.+.|+||+..
T Consensus 126 t~~~i~~~~~ak~~g~~vI~IT~~~ 150 (199)
T 1x92_A 126 SANVIQAIQAAHDREMLVVALTGRD 150 (199)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3445678999999999999999863
No 104
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=28.08 E-value=42 Score=27.17 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
-..-++++.|++.|.+.++||+...
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3445789999999999999999653
No 105
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.07 E-value=1.3e+02 Score=21.19 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=15.9
Q ss_pred CCCCCCCCHHHHhHHHhhhh
Q 021880 23 GGGKKKMTAEQSLAFNSVTE 42 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (306)
++++..+|.+|...|..++.
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~ 27 (80)
T 2cue_A 8 QRNRTSFTQEQIEALEKEFE 27 (80)
T ss_dssp CCCCCCSCHHHHHHHHHHHT
T ss_pred CCCCCccCHHHHHHHHHHHh
Confidence 34566799999999998884
No 106
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=28.06 E-value=75 Score=21.72 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=19.3
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|..++.. +.+|
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp 32 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSP 32 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCC
Confidence 3445668999999999988853 4556
No 107
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=27.89 E-value=71 Score=27.17 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHcCCEEEEeCCCCC---CChHHHHHHHHHcCCCEE
Q 021880 250 EPLAEVAVQLIHRTGGLAVLAHPWAL---KNPAAIIRKLKDVGLHGL 293 (306)
Q Consensus 250 ~~~~eevI~~I~~aGGiaVLAHP~~~---~~~~~li~~l~~~GldGi 293 (306)
...+.++++.++++ |..|+-||+.. .....-++.|...+.|||
T Consensus 42 I~~L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL~~~~pdGI 87 (188)
T 1vkf_A 42 ILNLKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGI 87 (188)
T ss_dssp TTTHHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHHHhcCCCEE
Confidence 34689999999999 79999999743 233445555556677776
No 108
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=27.86 E-value=1.4e+02 Score=25.15 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe-cCC-----CCCChHHHHHHHHhCCCeEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALT-DHD-----TMSGIPEAIETARRFGMKII 131 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaIT-DH~-----t~~g~~~~~~~~~~~~i~~i 131 (306)
..++++.++.+++.|++.|-+. -.. +-....++.+.+++.|+.+.
T Consensus 13 ~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 63 (278)
T 1i60_A 13 NSNLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPL 63 (278)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEE
T ss_pred CCCHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCee
Confidence 4789999999999999999998 332 12456677788888998754
No 109
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=27.82 E-value=40 Score=27.57 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCC
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
+-.+-++++.|+++|.+.|+||+..
T Consensus 122 t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 122 SRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3445678899999999999999864
No 110
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=27.79 E-value=56 Score=27.11 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCC-CChHHHHHHHHHcCCC-EEEEecC
Q 021880 253 AEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLH-GLEVYRS 298 (306)
Q Consensus 253 ~eevI~~I~~aGGiaVLAHP~~~-~~~~~li~~l~~~Gld-GiEv~~~ 298 (306)
.+..++...++|.=.|+-|.... ....++++.+.+.|+. ++|+..+
T Consensus 66 ~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~ 113 (211)
T 3f4w_A 66 GHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICV 113 (211)
T ss_dssp HHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTC
T ss_pred hHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCC
Confidence 44557888888887777775432 1225667777777876 4454443
No 111
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=27.68 E-value=1.3e+02 Score=19.43 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=16.0
Q ss_pred CCCCCCCCHHHHhHHHhhhh
Q 021880 23 GGGKKKMTAEQSLAFNSVTE 42 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (306)
++.+..+|.+|...|..++.
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~ 22 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFK 22 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 34567799999999998874
No 112
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=27.48 E-value=72 Score=27.37 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCCCCCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLH 303 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~~~~~ 303 (306)
.+.|+.+|++| +.|.++ ...+ .+.+..+.++|+|||-.-+|.--.+
T Consensus 197 ~~~v~~~~~~G-~~v~~w--Tvn~-~~~~~~l~~~GvdgI~TD~p~~~~~ 242 (247)
T 2otd_A 197 KARVMQLKDAG-LRILVY--TVNK-PQHAAELLRWGVDCICTDAIDVIGP 242 (247)
T ss_dssp HHHHHHHHHTT-CEEEEE--CCCC-HHHHHHHHHHTCSEEEESCTTTSCT
T ss_pred HHHHHHHHHCC-CEEEEE--ccCC-HHHHHHHHHcCCCEEEeCCHHHHHH
Confidence 57889999886 777664 4444 4678889999999999998865433
No 113
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=27.25 E-value=66 Score=27.86 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCC----------CCChHHHHHHHHhCCCeEE
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDT----------MSGIPEAIETARRFGMKII 131 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t----------~~g~~~~~~~~~~~~i~~i 131 (306)
+..++++.++.+++.|++.|-+.-... .....++.+.+++.|+.+.
T Consensus 28 ~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 83 (295)
T 3cqj_A 28 AGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVP 83 (295)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 458999999999999999999975432 0113456667778888753
No 114
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=27.20 E-value=65 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=18.2
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|..++.. +.+|
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp 42 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNP 42 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCC
Confidence 3445567999999999887743 3455
No 115
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=26.90 E-value=93 Score=27.67 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCChHHHHH-HH-HhCCCeEEEEeEEEE
Q 021880 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIE-TA-RRFGMKIIPGVEIST 138 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~-~~-~~~~i~~i~GiEis~ 138 (306)
-++++.|.+.|++.+.++||.....-.-+.. .+ ....|.+-+|+=+..
T Consensus 17 ~~~A~~AE~~Gfd~~w~~eh~~~~dp~~~laalAa~T~rI~lgt~v~~~~ 66 (327)
T 1z69_A 17 AYYAKLSEQQGFDHVWITDHYNNRDVYSTLTVLALNTNSIKIGPGVTNSY 66 (327)
T ss_dssp HHHHHHHHHTTCSEEEECCCTTSSCHHHHHHHHHHTCSSSEEEESCEESS
T ss_pred HHHHHHHHHCCCCEEEecccccccCHHHHHHHHHHhCCcceEeeeeccCC
Confidence 4567888899999999999975543322222 22 235788877775544
No 116
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=26.71 E-value=47 Score=29.81 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCEEEEeC-CCCCC------ChHHHHHHHHHcCCCEEEEecCC
Q 021880 253 AEVAVQLIHRTGGLAVLAH-PWALK------NPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 253 ~eevI~~I~~aGGiaVLAH-P~~~~------~~~~li~~l~~~GldGiEv~~~~ 299 (306)
-.+.|+.+|+.| +.|.+. ++... ++.+.+..|.++|+|||-.-+|.
T Consensus 217 ~~~~V~~ah~~G-~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIiTD~P~ 269 (292)
T 3mz2_A 217 VREVIDMLHERG-VMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDRPI 269 (292)
T ss_dssp HHHHHHHHHHTT-BCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEEESCHH
T ss_pred CHHHHHHHHHCC-CEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEEeCCHH
Confidence 457899999987 555553 22111 11468889999999999887763
No 117
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.1.16.3
Probab=26.62 E-value=92 Score=27.65 Aligned_cols=46 Identities=30% Similarity=0.296 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCChHHHHHH-H-HhCCCeEEEEeEE
Q 021880 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIET-A-RRFGMKIIPGVEI 136 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~-~-~~~~i~~i~GiEi 136 (306)
-++++.|.+.|++.+.++||.....-.-+..+ + ....|.+-+|+=+
T Consensus 17 ~~~a~~AE~~Gfd~~w~~eh~~~~~p~~~la~~Aa~T~rI~lgt~v~~ 64 (321)
T 1f07_A 17 VKLVKLAEDVGFEYAWITDHYNNKNVYETLALIAEGTETIKLGPGVTN 64 (321)
T ss_dssp HHHHHHHHHTTCCEEEECCCTTSSCHHHHHHHHHHTCSSCEEEESSBC
T ss_pred HHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHhCCcceEeeeeec
Confidence 45778888999999999999865433333222 2 2367888887643
No 118
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=26.59 E-value=48 Score=28.21 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHcCCEEE--Ee-C-CCCCCC--hHHHHHHHHHcCCC
Q 021880 251 PLAEVAVQLIHRTGGLAV--LA-H-PWALKN--PAAIIRKLKDVGLH 291 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaV--LA-H-P~~~~~--~~~li~~l~~~Gld 291 (306)
.+++++++.+.++|--.| .. | |..... ..++.+.+.+.||.
T Consensus 30 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~ 76 (257)
T 3lmz_A 30 FDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVT 76 (257)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCe
Confidence 467888888888875444 22 1 211111 14566677777775
No 119
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=26.54 E-value=1.3e+02 Score=21.44 Aligned_cols=28 Identities=11% Similarity=-0.071 Sum_probs=18.2
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|...+.--..+.||
T Consensus 8 rk~R~~~s~~q~~~L~~~f~~~~~~pYP 35 (83)
T 2dmn_A 8 KKRKGNLPAESVKILRDWMYKHRFKAYP 35 (83)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHTTTTCCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCC
Confidence 3455668999988888776543334555
No 120
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=26.48 E-value=1e+02 Score=21.32 Aligned_cols=21 Identities=10% Similarity=-0.094 Sum_probs=17.8
Q ss_pred CCCCCCCCCHHHHhHHHhhhh
Q 021880 22 RGGGKKKMTAEQSLAFNSVTE 42 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ 42 (306)
+++++..+|.+|...|..++.
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~ 22 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFN 22 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 566778899999999998885
No 121
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A*
Probab=26.38 E-value=97 Score=28.41 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEE
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEi 136 (306)
|--.+|+++++..+.+|++.+=|-|-| ..+..+++..||.++.|+--
T Consensus 11 ~nlp~p~~vv~llks~gi~~VRlYdaD-----~~vL~Al~~sgi~v~vGV~n 57 (316)
T 3em5_A 11 NNLPPVSEVIALYKKSNITRMRIYDPN-----QAVLEALRGSNIELILGVPN 57 (316)
T ss_dssp TTCCCHHHHHHHHHHTTCCEEECSSCC-----HHHHHHHTTCCCEEEEEECG
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEecCC-----HHHHHHhhcCCceEEEeccc
Confidence 334689999999999999999998765 45777788899999999963
No 122
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=26.05 E-value=65 Score=27.85 Aligned_cols=41 Identities=12% Similarity=0.366 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.+|++| +.|.+ |...+ .+.+..+.++|+|||-.-+|
T Consensus 201 ~~~v~~~~~~G-~~v~~--wTvn~-~~~~~~l~~~GvdgIiTD~P 241 (252)
T 2pz0_A 201 PELVEGCKKNG-VKLFP--WTVDR-KEDMERMIKAGVDGIITDDP 241 (252)
T ss_dssp HHHHHHHHHTT-CEECC--BCCCS-HHHHHHHHHHTCSEEEESCH
T ss_pred HHHHHHHHHCC-CEEEE--ECCCC-HHHHHHHHHcCCCEEEcCCH
Confidence 57889999986 66644 55444 46788899999999987766
No 123
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=25.73 E-value=90 Score=24.60 Aligned_cols=38 Identities=29% Similarity=0.272 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEE
Q 021880 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i 131 (306)
.++++.|.+.|++.+.++..- .-.++.+++++.|+.++
T Consensus 91 ~~vv~~~~~~gi~~i~~~~g~---~~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 91 MEYVEQAIKKGAKVVWFQYNT---YNREASKKADEAGLIIV 128 (144)
T ss_dssp HHHHHHHHHHTCSEEEECTTC---CCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCEEEECCCc---hHHHHHHHHHHcCCEEE
Confidence 457888899999998776422 24678888889998866
No 124
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=25.58 E-value=1.2e+02 Score=20.15 Aligned_cols=28 Identities=7% Similarity=-0.106 Sum_probs=17.7
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|...+..=....||
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp 31 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYP 31 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCC
Confidence 3455678999988888776321234455
No 125
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=25.57 E-value=95 Score=26.65 Aligned_cols=46 Identities=9% Similarity=-0.034 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEE
Q 021880 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133 (306)
Q Consensus 86 G~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~G 133 (306)
..+++++.++.+++.|++.|-+..... ...++.+.+++.|+.+...
T Consensus 29 ~~~~~~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~l~~~gl~~~~~ 74 (301)
T 3cny_A 29 KDNNLQQLLSDIVVAGFQGTEVGGFFP--GPEKLNYELKLRNLEIAGQ 74 (301)
T ss_dssp TTCCHHHHHHHHHHHTCCEECCCTTCC--CHHHHHHHHHHTTCEECEE
T ss_pred cCCCHHHHHHHHHHhCCCEEEecCCCC--CHHHHHHHHHHCCCeEEEE
Confidence 357899999999999999998883322 5667777888888876654
No 126
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=25.53 E-value=1.5e+02 Score=28.50 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEe-cCC--------------CCC------ChHHHHHHHHhCCCeEEEEeEEE
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALT-DHD--------------TMS------GIPEAIETARRFGMKIIPGVEIS 137 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaIT-DH~--------------t~~------g~~~~~~~~~~~~i~~i~GiEis 137 (306)
-..+.|++.++.|++.|++.+.+| -|+ ++. =+.++.++|++.||++ |+=+|
T Consensus 102 p~~fDp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~Glk~--GlY~S 173 (455)
T 2zxd_A 102 AEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRF--GVYYS 173 (455)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEE--EEEEE
T ss_pred cccCCHHHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHcCCeE--EEEec
Confidence 457999999999999999999987 332 221 1457788889998764 44444
No 127
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9
Probab=25.45 E-value=78 Score=29.74 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHHcCCcEEEEecCCCCC--ChHHHHHHHHhCCCeEEEEeE
Q 021880 94 VERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVE 135 (306)
Q Consensus 94 i~~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~~i~~i~GiE 135 (306)
++.+.+.|+..+.- +.+.. .+..+.+.+++.++.++.|..
T Consensus 124 ~~~~l~~GvTtv~~--~~~~~~~~~~~~~~~~~~~g~r~~~g~~ 165 (475)
T 2ood_A 124 LDALLAAGTTTCQA--FTSSSPVATEELFEEASRRNMRVIAGLT 165 (475)
T ss_dssp HHHHHHTTEEEEEE--ECCSSHHHHHHHHHHHHHHTCCEEECCE
T ss_pred HHHHHhcCceEEEE--ecccCchhHHHHHHHHHHcCCeEEEEee
Confidence 67888999887764 32221 123444556667777665544
No 128
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=25.30 E-value=52 Score=27.76 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCE---EEEeCCCCCC-ChHHHHHHHHHcCCCEEEEecC
Q 021880 253 AEVAVQLIHRTGGL---AVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 253 ~eevI~~I~~aGGi---aVLAHP~~~~-~~~~li~~l~~~GldGiEv~~~ 298 (306)
=.+.|+.||++.+- .|+--|+.|. .+..+.+.++..++.=|||.=|
T Consensus 64 EGeLId~Ih~a~~~~~dgIIINpgAyTHtSvAlrDAl~~v~~P~VEVHiS 113 (176)
T 2c4w_A 64 EGEIIDKIQESVGSEYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLT 113 (176)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEECGGGGGTCHHHHHHHHTSSSCEEEEESS
T ss_pred HHHHHHHHHHhccCCeeEEEECcchhccchHHHHHHHHhCCCCEEEEEec
Confidence 35789999999543 7888999886 4578999999999999999865
No 129
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=25.23 E-value=1.5e+02 Score=20.25 Aligned_cols=28 Identities=4% Similarity=-0.047 Sum_probs=18.5
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|...+..=....+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP 29 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYP 29 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCc
Confidence 4566789999988888776321234455
No 130
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=25.07 E-value=1.2e+02 Score=27.38 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=27.9
Q ss_pred HHHHHHHc--CCEEEEeCCCCCCC--hHHHHHHHHHcCCCEEEEecCCC
Q 021880 256 AVQLIHRT--GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG 300 (306)
Q Consensus 256 vI~~I~~a--GGiaVLAHP~~~~~--~~~li~~l~~~GldGiEv~~~~~ 300 (306)
+++++.++ |.++|+|+-+.... .-++.+.+.+.|.||+=+..|+.
T Consensus 72 v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 120 (307)
T 3s5o_A 72 VVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 120 (307)
T ss_dssp HHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCT
T ss_pred HHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 44444443 56788887664322 13566677788888888877754
No 131
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=25.05 E-value=1.5e+02 Score=21.06 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=16.4
Q ss_pred CCCCCCCCHHHHhHHHhhhhh
Q 021880 23 GGGKKKMTAEQSLAFNSVTEW 43 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ 43 (306)
++++-.+|.+|...|...++.
T Consensus 18 rR~Rt~ft~~Ql~~Le~~f~~ 38 (80)
T 1wh5_A 18 KRHRTKFTAEQKERMLALAER 38 (80)
T ss_dssp CCCSCCCCHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHh
Confidence 345567999999999987754
No 132
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=24.96 E-value=1.1e+02 Score=28.31 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=38.6
Q ss_pred CCCHHHH---HHHHHHcCCcEEEEec-CC-CC------------------CChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 87 YLSPSKL---VERAHCNGVKVLALTD-HD-TM------------------SGIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 87 ~~sp~el---i~~A~~~Gl~~iaITD-H~-t~------------------~g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
.+++++. ++.+++.|++.+.+|- |+ .. +-+.++.++|++.|++++.|+=.+.
T Consensus 50 nWd~~eW~~~~~~mK~~GikyvIl~~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv~~Gly~S~ 124 (340)
T 4h41_A 50 NWGEKEWDLDFQHMKRIGIDTVIMIRSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKFYFGLYDSG 124 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEESCSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEEEEECCBCS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeeCCeeccCcccccccCccCCcccHHHHHHHHHHHhCCeEEEecCCCh
Confidence 5788876 7888999999988864 21 10 1156678889999999999985544
No 133
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=24.86 E-value=69 Score=28.28 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.+|++| +.| ++|...+ .+.+..+.++|+|||-.-+|
T Consensus 231 ~~~v~~~~~~G-~~v--~~wTvn~-~~~~~~l~~~GVdgIiTD~P 271 (287)
T 2oog_A 231 EQNTHHLKDLG-FIV--HPYTVNE-KADMLRLNKYGVDGVFTNFA 271 (287)
T ss_dssp HHHHHHHHHTT-CEE--CCBCCCS-HHHHHHHHHHTCSEEEESCH
T ss_pred HHHHHHHHHCC-CeE--EEEeCCC-HHHHHHHHHcCCCEEEeCCH
Confidence 46889999986 655 4555544 46788899999999987665
No 134
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=24.79 E-value=42 Score=27.13 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEecC
Q 021880 88 LSPSKLVERAHCNGVKVLALTDH 110 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH 110 (306)
-..-++++.|+++|.+.++||+.
T Consensus 124 ~~~~~~~~~ak~~g~~vi~iT~~ 146 (188)
T 1tk9_A 124 PNVLEALKKAKELNMLCLGLSGK 146 (188)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEG
T ss_pred HHHHHHHHHHHHCCCEEEEEeCC
Confidence 33456788888899999999885
No 135
>1fvp_A Flavoprotein 390, FP390; flavin-binding protein; HET: FMA; 2.70A {Photobacterium phosphoreum} SCOP: c.1.16.2
Probab=24.72 E-value=45 Score=28.09 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=22.8
Q ss_pred HHHHHHHHH--cCCcEEEEecCCCCCCh
Q 021880 91 SKLVERAHC--NGVKVLALTDHDTMSGI 116 (306)
Q Consensus 91 ~eli~~A~~--~Gl~~iaITDH~t~~g~ 116 (306)
-++++.|.+ .|++.+.+++|+.+.+.
T Consensus 29 ~~la~~Ae~~~lGf~~~w~~EHH~~~~~ 56 (231)
T 1fvp_A 29 LETLRIIDEDTSIYDVINIDDHYLVKKD 56 (231)
T ss_dssp HHHHHHHHHHCSSEEEEEEECTTSCCBC
T ss_pred HHHHHHHhhhcCCCCeEeecccCCCCCc
Confidence 357888999 99999999999998865
No 136
>1nfp_A LUXF gene product; flavin mononucleotide, myristate, flavoprotein; HET: FMN MYR; 1.60A {Photobacterium leiognathi} SCOP: c.1.16.2
Probab=24.57 E-value=46 Score=28.09 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.3
Q ss_pred HHHHHHHH--cCCcEEEEecCCCCCCh
Q 021880 92 KLVERAHC--NGVKVLALTDHDTMSGI 116 (306)
Q Consensus 92 eli~~A~~--~Gl~~iaITDH~t~~g~ 116 (306)
++++.|.+ .|++.+.+++|+.+.+.
T Consensus 30 ~la~~Ae~~~lGf~~~w~~EHH~~~~~ 56 (228)
T 1nfp_A 30 ETLRIIDEDTSIYDVVAFSEHHIDKSY 56 (228)
T ss_dssp HHHHHHHHTCSCEEEEEEECTTSCCBC
T ss_pred HHHHHhccccCCCCEEeccccCCCCCC
Confidence 47888999 99999999999998765
No 137
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=24.54 E-value=50 Score=28.64 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.+|++| +.|.++ ...+ .+.+..+.++|+|||-.-+|
T Consensus 194 ~~~v~~~~~~G-~~V~~W--Tvn~-~~~~~~l~~~GVDgIiTD~P 234 (250)
T 3ks6_A 194 AGLMAQVQAAG-LDFGCW--AAHT-PSQITKALDLGVKVFTTDRP 234 (250)
T ss_dssp HHHHHHHHHTT-CEEEEE--CCCS-HHHHHHHHHHTCSEEEESCH
T ss_pred HHHHHHHHHCC-CEEEEE--eCCC-HHHHHHHHHcCCCEEEcCCH
Confidence 57899999886 777665 4343 46788899999999987765
No 138
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=24.45 E-value=1.4e+02 Score=20.85 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|...+.. +.||
T Consensus 10 rr~Rt~ft~~Q~~~Le~~F~~---~~yp 34 (77)
T 1nk2_P 10 RKRRVLFTKAQTYELERRFRQ---QRYL 34 (77)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCC
T ss_pred CCCCccCCHHHHHHHHHHHhh---cCCC
Confidence 344567999999999988853 4455
No 139
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=24.24 E-value=52 Score=26.63 Aligned_cols=23 Identities=26% Similarity=0.021 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHcCCcEEEEecCC
Q 021880 89 SPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 89 sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
..-++++.|+++|.+.|+||+..
T Consensus 94 ~~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 94 SLIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 35568999999999999999964
No 140
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.17 E-value=98 Score=27.94 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=28.2
Q ss_pred CCEEEEeCCCCCCC--hHHHHHHHHHcCCCEEEEecCCCC
Q 021880 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGK 301 (306)
Q Consensus 264 GGiaVLAHP~~~~~--~~~li~~l~~~GldGiEv~~~~~~ 301 (306)
|.++|+|+-+.... .-++.+.+.+.|.||+=+..|++.
T Consensus 75 grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~~ 114 (313)
T 3dz1_A 75 KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPSL 114 (313)
T ss_dssp TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTC
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 77899998765432 245677888889999988888754
No 141
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=24.17 E-value=1.1e+02 Score=26.57 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCC------CCCChHHHHHHHHhCCCeEEE
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHD------TMSGIPEAIETARRFGMKIIP 132 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~------t~~g~~~~~~~~~~~~i~~i~ 132 (306)
.++++.++.|++.|++.|-+.-.+ .-....++.+.+++.|+.+..
T Consensus 36 ~~~~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 86 (296)
T 2g0w_A 36 VSFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTE 86 (296)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEe
Confidence 899999999999999999987531 123456677888889987544
No 142
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=24.14 E-value=1.5e+02 Score=19.20 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 24 GGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++..+|.+|...|...+.. +.+|
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~---~~yp 25 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQ---KQYL 25 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCC
T ss_pred CCCCCCCHHHHHHHHHHHhc---CCCc
Confidence 45567999999999988853 4555
No 143
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=23.97 E-value=62 Score=28.71 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEe
Q 021880 89 SPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (306)
Q Consensus 89 sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~Gi 134 (306)
-++.+++.|++.|++.+-|-|= ...-..++.+.++++|+.+|+=+
T Consensus 104 G~e~F~~~~~~aGvdG~IipDL-P~eE~~~~~~~~~~~Gl~~I~lv 148 (252)
T 3tha_A 104 GLEKFVKKAKSLGICALIVPEL-SFEESDDLIKECERYNIALITLV 148 (252)
T ss_dssp CHHHHHHHHHHTTEEEEECTTC-CGGGCHHHHHHHHHTTCEECEEE
T ss_pred hHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999999884 33445677888899999876644
No 144
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=23.96 E-value=1.1e+02 Score=31.50 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--ChHHHHHHHHhCC---CeEEEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFG---MKIIPG 133 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~~---i~~i~G 133 (306)
..+|+++++.|++.+.+.|+++=.++.. ...+..+.+++.| +.++.|
T Consensus 641 ~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~Lr~~G~~dv~VivG 692 (762)
T 2xij_A 641 FQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDILVMCG 692 (762)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred CCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4799999999999999999999766533 2345556666655 477777
No 145
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel, oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP: c.1.16.3
Probab=23.79 E-value=1.1e+02 Score=27.63 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCChHHHHH-HH-HhCCCeEEEEeEEEE
Q 021880 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIE-TA-RRFGMKIIPGVEIST 138 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~-~~-~~~~i~~i~GiEis~ 138 (306)
-++++.|.+.|++.+.++||.....-.-+.. .+ ....|.+-+|+=+..
T Consensus 20 ~~~a~~AE~~Gfd~~w~~eh~~~~dp~~~la~lAa~T~rI~lgt~v~~~~ 69 (349)
T 1ezw_A 20 AHLIKVAEDNGFEYAWICDHYNNYSYMGVLTLAAVITSKIKLGPGITNPY 69 (349)
T ss_dssp HHHHHHHHHTTCCEEEECCCTTSCCHHHHHHHHHHTCSSSEEEESSBCSS
T ss_pred HHHHHHHHHcCCCEEEeccccCCCCHHHHHHHHHHhCCcceEEeeeecCC
Confidence 4567888899999999999975443222222 22 336788877775443
No 146
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=23.69 E-value=1.6e+02 Score=19.80 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|..++. .+.+|
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~---~~~yp 26 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFR---VNCYP 26 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHT---TCSSC
T ss_pred cCCCCCCCHHHHHHHHHHHH---hcCCC
Confidence 34566799999999998884 34555
No 147
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.68 E-value=1.2e+02 Score=21.09 Aligned_cols=24 Identities=21% Similarity=0.026 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 24 GGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++++|.+|...|...+.. +.+|
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp 32 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLP 32 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCC
Confidence 34556899999999988844 4455
No 148
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=23.60 E-value=75 Score=27.36 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCC-CChHHHHHHHHHcCCC
Q 021880 252 LAEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLH 291 (306)
Q Consensus 252 ~~eevI~~I~~aGGiaVLAHP~~~-~~~~~li~~l~~~Gld 291 (306)
+++++++.+.++|--.|=-....+ ....++-+.+.+.||.
T Consensus 39 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gl~ 79 (287)
T 3kws_A 39 SLNEKLDFMEKLGVVGFEPGGGGLAGRVNEIKQALNGRNIK 79 (287)
T ss_dssp SHHHHHHHHHHTTCCEEECBSTTCGGGHHHHHHHHTTSSCE
T ss_pred CHHHHHHHHHHcCCCEEEecCCchHHHHHHHHHHHHHcCCe
Confidence 566677777776643331111111 1224444455555554
No 149
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=23.58 E-value=1.3e+02 Score=26.78 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=36.7
Q ss_pred CceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----ChHHHHHHHHhCC----CeEEEE
Q 021880 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS-----GIPEAIETARRFG----MKIIPG 133 (306)
Q Consensus 71 ~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t~~-----g~~~~~~~~~~~~----i~~i~G 133 (306)
+|..+||-. ..+++++++.|++.+.+.|+++=-.+.. ...+..+.+++.+ ++++.|
T Consensus 157 G~eVi~LG~-------~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivG 221 (262)
T 1xrs_B 157 MIDAYNLGS-------QVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCG 221 (262)
T ss_dssp TEEEEECCS-------SBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEE
T ss_pred CcEEEECCC-------CCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 455555533 3699999999999999999998654431 2333455555554 555543
No 150
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=23.46 E-value=1.2e+02 Score=26.03 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=42.7
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC-CCChHHHHHHHHhCCCeEEEEeEEEE
Q 021880 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT-MSGIPEAIETARRFGMKIIPGVEIST 138 (306)
Q Consensus 72 ~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t-~~g~~~~~~~~~~~~i~~i~GiEis~ 138 (306)
...+|.|++. .+|+..++.+.+.|.+.+.+ |-. .....++.+.+++.|++ .|+.+..
T Consensus 64 ~~~~dvhLmv------~~p~~~i~~~~~aGad~itv--H~Ea~~~~~~~i~~i~~~G~k--~gval~p 121 (228)
T 3ovp_A 64 DPFFDMHMMV------SKPEQWVKPMAVAGANQYTF--HLEATENPGALIKDIRENGMK--VGLAIKP 121 (228)
T ss_dssp SSCEEEEEEC------SCGGGGHHHHHHHTCSEEEE--EGGGCSCHHHHHHHHHHTTCE--EEEEECT
T ss_pred CCcEEEEEEe------CCHHHHHHHHHHcCCCEEEE--ccCCchhHHHHHHHHHHcCCC--EEEEEcC
Confidence 3568999996 67888999999999999988 432 23455677777888876 4776654
No 151
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=23.30 E-value=1.8e+02 Score=25.37 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecC-CCCC---------ChHHHHHHHHhCCCeEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDH-DTMS---------GIPEAIETARRFGMKII 131 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH-~t~~---------g~~~~~~~~~~~~i~~i 131 (306)
..++++.++.+++.|++.|-+.-. ..+. ...++.+++++.|+.+.
T Consensus 14 ~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 68 (340)
T 2zds_A 14 DLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCW 68 (340)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeEE
Confidence 578999999999999999999842 1121 23566777888998864
No 152
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=23.25 E-value=2.7e+02 Score=23.98 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=37.5
Q ss_pred ceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC---------CCChHHHHHHHHhCCCe
Q 021880 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT---------MSGIPEAIETARRFGMK 129 (306)
Q Consensus 76 dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t---------~~g~~~~~~~~~~~~i~ 129 (306)
-|=+|+....+ .++++.++.|++.|++.+-|...+. -....++.+.+++.|+.
T Consensus 7 klG~~~~~~~~-~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 68 (303)
T 3aal_A 7 KIGSHVSMSGK-KMLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIE 68 (303)
T ss_dssp CEEEECCCCTT-TTHHHHHHHHHHTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCC
T ss_pred eeceeeecCCC-ccHHHHHHHHHHcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCc
Confidence 35566655433 4899999999999999999943221 12456677788888984
No 153
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=23.14 E-value=65 Score=27.29 Aligned_cols=42 Identities=33% Similarity=0.412 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
.+.|+.+|++| +.|.++ ...+ .+.+..+.++|+|||-.-+|.
T Consensus 176 ~~~v~~~~~~G-~~v~~w--tvn~-~~~~~~l~~~GvdgI~TD~p~ 217 (224)
T 1vd6_A 176 EEAVAGWRKRG-LFVVAW--TVNE-EGEARRLLALGLDGLIGDRPE 217 (224)
T ss_dssp HHHHHHHHHTT-CEEEEE--CCCC-HHHHHHHHHTTCSEEEESCHH
T ss_pred HHHHHHHHHCC-CEEEEE--eCCC-HHHHHHHHhcCCCEEEcCCHH
Confidence 57899999886 777665 3333 467889999999999887764
No 154
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=23.10 E-value=26 Score=30.48 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=28.8
Q ss_pred eEEceeeeCCCCC------------CCCCHHHHHHHHHHcCCcEEEEec
Q 021880 73 VVFELHSHSNFSD------------GYLSPSKLVERAHCNGVKVLALTD 109 (306)
Q Consensus 73 ~~~dlH~HT~~SD------------G~~sp~eli~~A~~~Gl~~iaITD 109 (306)
+.+|.|+|-...+ ...+++++++.+.+.|++...+.-
T Consensus 13 ~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~ 61 (288)
T 2ffi_A 13 TAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQ 61 (288)
T ss_dssp CCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBC
T ss_pred CceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEEC
Confidence 5799999975321 147899999999999999776653
No 155
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=22.94 E-value=1.1e+02 Score=20.24 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=17.2
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++.+..+|.+|...|..++.. +.+|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp 28 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNE---NRYL 28 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCC
Confidence 345567999999999988853 4555
No 156
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=22.91 E-value=49 Score=26.98 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHcCCcEEEEecCC
Q 021880 89 SPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 89 sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
.+-++++.|+++|.+.|+||+..
T Consensus 131 ~~~~~~~~ak~~g~~vI~IT~~~ 153 (198)
T 2xbl_A 131 NILAAFREAKAKGMTCVGFTGNR 153 (198)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSC
T ss_pred HHHHHHHHHHHCCCeEEEEECCC
Confidence 34567888889999999999864
No 157
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=22.86 E-value=1.5e+02 Score=20.93 Aligned_cols=28 Identities=11% Similarity=0.079 Sum_probs=20.1
Q ss_pred hcCCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 20 QKRGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++.+..+|.+|...|..++.. ..||
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp 47 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQR---QKYL 47 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHH---SSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---CCCC
Confidence 344455678999999999988853 4555
No 158
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=22.82 E-value=1.2e+02 Score=27.41 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCEEEEeCCCC--------CCChHHHHHHHHHcCCCEEEEecCCCC
Q 021880 253 AEVAVQLIHRTGGLAVLAHPWA--------LKNPAAIIRKLKDVGLHGLEVYRSDGK 301 (306)
Q Consensus 253 ~eevI~~I~~aGGiaVLAHP~~--------~~~~~~li~~l~~~GldGiEv~~~~~~ 301 (306)
+++.|++.|++|=- .-|+- -..-++.+++..++|+|.||+....-+
T Consensus 82 l~ekI~l~~~~gV~---v~~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~ 135 (276)
T 1u83_A 82 LEEKISTLKEHDIT---FFFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLP 135 (276)
T ss_dssp HHHHHHHHHHTTCE---EEECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred HHHHHHHHHHcCCe---EeCCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCccc
Confidence 99999999999833 23332 123478999999999999999665443
No 159
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=22.77 E-value=63 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=19.3
Q ss_pred CCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 22 RGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
+++++..+|.+|...|...+.. +.||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp 28 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYP 28 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCC
Confidence 4455678999999999988844 4556
No 160
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.70 E-value=53 Score=26.41 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCC
Q 021880 88 LSPSKLVERAHCNGVKVLALTDHD 111 (306)
Q Consensus 88 ~sp~eli~~A~~~Gl~~iaITDH~ 111 (306)
-..-++++.|+++|.+.++||+..
T Consensus 110 ~~~~~~~~~ak~~g~~vi~IT~~~ 133 (183)
T 2xhz_A 110 SEITALIPVLKRLHVPLICITGRP 133 (183)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESCT
T ss_pred HHHHHHHHHHHHCCCCEEEEECCC
Confidence 345567999999999999999964
No 161
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=22.67 E-value=38 Score=24.51 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=22.4
Q ss_pred HHhhhhhcCCCCCCCCCHHHHhHHHhhhhh
Q 021880 14 KKKKKKQKRGGGKKKMTAEQSLAFNSVTEW 43 (306)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (306)
||.+++++...++...|++|...|....+-
T Consensus 6 ~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~ 35 (79)
T 2yus_A 6 SGTLAKSKGASAGREWTEQETLLLLEALEM 35 (79)
T ss_dssp SCCCCCCCSSCCSCCCCHHHHHHHHHHHHH
T ss_pred cCccCCccccccCCCcCHHHHHHHHHHHHH
Confidence 444555666677889999999998877755
No 162
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=22.67 E-value=1.4e+02 Score=25.68 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCEEEEeCCC-CCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPW-ALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~-~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.+|++| +.|.++-. .+.+..+.+..+.++|+|||-.-+|
T Consensus 202 ~~~v~~~~~~G-~~v~~wTv~~~~n~~~~~~~l~~~GvdgI~TD~p 246 (258)
T 2o55_A 202 KEQVCTAHEKG-LSVTVWMPWIFDDSEEDWKKCLELQVDLICSNYP 246 (258)
T ss_dssp HHHHHHHHHTT-CEEEEECCTTCCCCHHHHHHHHHHTCSEEEESCH
T ss_pred HHHHHHHHHCC-CEEEEeeCCCCCCCHHHHHHHHHcCCCEEEeCCH
Confidence 57889999986 77766542 2234567888999999999987766
No 163
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=22.54 E-value=46 Score=28.71 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecCC
Q 021880 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 299 (306)
Q Consensus 255 evI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~~ 299 (306)
+.|+.+|++| +.|.++ ... ..+.+..+.++|+|||-.-+|.
T Consensus 187 ~~v~~~~~~G-~~v~~W--TVn-~~~~~~~l~~~GVdgIiTD~P~ 227 (238)
T 3no3_A 187 DWVKDCKVLG-MTSNVW--TVD-DPKLMEEMIDMGVDFITTDLPE 227 (238)
T ss_dssp THHHHHHHTT-CEEEEE--CCC-SHHHHHHHHHHTCSEEEESCHH
T ss_pred HHHHHHHHCC-CEEEEE--CCC-CHHHHHHHHHcCCCEEECCCHH
Confidence 4678888876 666665 333 3578889999999999887763
No 164
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=22.28 E-value=1.3e+02 Score=19.73 Aligned_cols=24 Identities=13% Similarity=0.046 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 24 GGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
|.+..+|.+|...|...+.. +.+|
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~---~~yp 24 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSR---THYP 24 (60)
T ss_dssp ----CCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCcccCHHHHHHHHHHHHc---CCCc
Confidence 45678999999999988843 4556
No 165
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=22.18 E-value=1.2e+02 Score=31.15 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--ChHHHHHHHHhCC---CeEEEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFG---MKIIPG 133 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~--g~~~~~~~~~~~~---i~~i~G 133 (306)
..+|+++++.|++.+.+.|+++=.++.. ...+..+.+++.| +.++.|
T Consensus 633 ~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~L~~~G~~~i~VivG 684 (727)
T 1req_A 633 FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVG 684 (727)
T ss_dssp TBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred CCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 4789999999999999999999876533 2345556666655 477776
No 166
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A
Probab=22.18 E-value=1.4e+02 Score=27.07 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCChHHHHHHHHhCCCeEEEEeEEE
Q 021880 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (306)
Q Consensus 85 DG~~sp~eli~~A~~~Gl~~iaITDH~t~~g~~~~~~~~~~~~i~~i~GiEis 137 (306)
|--.+|+++++..+..|++.|=|=|-| ..+.++++..||+++.|+-.+
T Consensus 10 ~nlp~~~~vv~llk~~~i~~VRlY~~d-----~~vL~A~~~tgi~v~lgv~n~ 57 (306)
T 1aq0_A 10 NNLPAASTVVSMFKSNGIKSMRLYAPN-----QAALQAVGGTGINVVVGAPND 57 (306)
T ss_dssp SSCCCHHHHHHHHHHHTCCEEEESSCC-----HHHHHHHTTSCCEEEEEECGG
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCCC-----HHHHHHHHhcCCEEEEecccc
Confidence 345789999999999999999997744 566777778999999998754
No 167
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=22.16 E-value=1.8e+02 Score=20.07 Aligned_cols=25 Identities=8% Similarity=-0.133 Sum_probs=18.5
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|...+.. +.+|
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp 32 (73)
T 2l7z_A 8 RKKRVPYTKVQLKELEREYAT---NKFI 32 (73)
T ss_dssp CCCCCCSCHHHHHHHHHHHHH---TSCC
T ss_pred CCCCCCCCHHHHHHHHHHHhh---CCCc
Confidence 445567899999999988854 4555
No 168
>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A
Probab=22.13 E-value=86 Score=27.65 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=35.8
Q ss_pred eEEceeeeCCCC---------------CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-ChHHHHHHHHhCC
Q 021880 73 VVFELHSHSNFS---------------DGYLSPSKLVERAHCNGVKVLALTDHDTMS-GIPEAIETARRFG 127 (306)
Q Consensus 73 ~~~dlH~HT~~S---------------DG~~sp~eli~~A~~~Gl~~iaITDH~t~~-g~~~~~~~~~~~~ 127 (306)
+.+|.|+|-.-. ....+++++++.+.+.|++...+.-=+... ....+.+.+++.+
T Consensus 4 m~iD~H~H~~~~~~~~~pw~~~~~~~~~~~~~~~~ll~~~~~~GV~~~V~v~~~~~~~~n~~l~~la~~~p 74 (303)
T 4do7_A 4 LRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEA 74 (303)
T ss_dssp CCEEEEECCBCCCGGGCTTCCTTCGGGSSCBCHHHHHHHHHHTTCCEEEEECCSSSHHHHHHHHHHHTTCT
T ss_pred cEEeCCEecccCCCCCCCCCCCccccccCCCCHHHHHHHHHhcCCcEEEEEccCCcHHHHHHHHHHHHhCC
Confidence 568999997321 135799999999999999988776533211 1223445555443
No 169
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=22.11 E-value=39 Score=26.77 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=23.9
Q ss_pred hhhhhcCCCCCCCCCHHHHhHHHhhhhhhcc
Q 021880 16 KKKKQKRGGGKKKMTAEQSLAFNSVTEWVYL 46 (306)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (306)
++.+.+.+++|+..|.+|..+|....+..+.
T Consensus 7 ~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~ 37 (121)
T 2juh_A 7 KRSELSQRRIRRPFSVAEVEALVEAVEHLGT 37 (121)
T ss_dssp CCCCCCCCCSSCCCCHHHHHHHHHHHHHHGG
T ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 3455667788889999999999888766544
No 170
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Probab=21.98 E-value=2.1e+02 Score=26.15 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=29.4
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecC
Q 021880 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDH 110 (306)
Q Consensus 73 ~~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaITDH 110 (306)
-++|.|+|...+ ....+.....+.|...|+..+..+-+
T Consensus 54 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~ 93 (428)
T 3mpg_A 54 GLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMPN 93 (428)
T ss_dssp CEEEEEECCCTTTCTTTCCHHHHHHHHHHHTEEEEEECSC
T ss_pred CEEEEeeccCCCCCCchhHHHHHHHHHHhCCeEEEEeCCC
Confidence 488999998654 22456778899999999999887654
No 171
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.97 E-value=1.7e+02 Score=19.98 Aligned_cols=27 Identities=22% Similarity=0.003 Sum_probs=21.5
Q ss_pred cCCCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 21 KRGGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
.+.+++..+|.+|...|..++.. ..+|
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~---~~yp 31 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLK---NQFP 31 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHH---cCCC
Confidence 56778899999999999998863 3455
No 172
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=21.82 E-value=64 Score=28.92 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEecC
Q 021880 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (306)
Q Consensus 254 eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~~ 298 (306)
.+.|+.+|++| +.|.+. ...+ .+.+..+.++|+|||=.-+|
T Consensus 258 ~~~v~~~~~~G-l~V~~W--TVn~-~~~~~~l~~~GVDgIiTD~P 298 (313)
T 3l12_A 258 PELVAEAHDLG-LIVLTW--TVNE-PEDIRRMATTGVDGIVTDYP 298 (313)
T ss_dssp HHHHHHHHHTT-CEEEEB--CCCS-HHHHHHHHHHTCSEEEESCH
T ss_pred HHHHHHHHHCC-CEEEEE--cCCC-HHHHHHHHHcCCCEEEeCCH
Confidence 57899999885 777664 4444 56888999999999987666
No 173
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=21.79 E-value=1.4e+02 Score=20.24 Aligned_cols=25 Identities=4% Similarity=-0.051 Sum_probs=18.7
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|..++.. +.||
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp 27 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYL 27 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSC
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCC
Confidence 445678999999999988853 4455
No 174
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=21.29 E-value=78 Score=21.81 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=19.7
Q ss_pred hcCCCCCCCCCHHHHhHHHhhhhhhc
Q 021880 20 QKRGGGKKKMTAEQSLAFNSVTEWVY 45 (306)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (306)
++.+.+|...|++|...|....+-.+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 44556778899999999888776553
No 175
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.28 E-value=75 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=19.3
Q ss_pred CCCCCCCHHHHhHHHhhhhhhccC
Q 021880 24 GGKKKMTAEQSLAFNSVTEWVYLD 47 (306)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~ 47 (306)
+-+-.+|.+|...|++.++.|.+.
T Consensus 9 R~RT~~s~eQL~~Lqs~f~~~~~y 32 (71)
T 1wi3_A 9 RSRTKISLEALGILQSFIHDVGLY 32 (71)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHCSC
T ss_pred CCCccCCHHHHHHHHHHHHhcCCC
Confidence 344578999999999999987544
No 176
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=21.13 E-value=1.2e+02 Score=26.46 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEec
Q 021880 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 297 (306)
Q Consensus 253 ~eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~ 297 (306)
+.++.+.+.+.|=++|+-.... ....++.+.+.+.|++.||+-.
T Consensus 24 m~~~~~~l~~~~vv~Vir~~~~-~~a~~~a~al~~gGi~~iEvt~ 67 (232)
T 4e38_A 24 MSTINNQLKALKVIPVIAIDNA-EDIIPLGKVLAENGLPAAEITF 67 (232)
T ss_dssp HHHHHHHHHHHCEEEEECCSSG-GGHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHhCCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEEEeC
Confidence 5678999999999999987532 2346789999999999999954
No 177
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=21.09 E-value=47 Score=26.28 Aligned_cols=30 Identities=7% Similarity=-0.008 Sum_probs=23.1
Q ss_pred hhhhcCCCCCCCCCHHHHhHHHhhhhhhcc
Q 021880 17 KKKQKRGGGKKKMTAEQSLAFNSVTEWVYL 46 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (306)
.+++.++++|+..|.+|..+|....+..+.
T Consensus 22 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~ 51 (122)
T 2roh_A 22 RPDFGQRRIRRPFTVAEVELLVEAVEHLGT 51 (122)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHHHHHSS
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 344566678889999999999988876544
No 178
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.90 E-value=1.1e+02 Score=23.97 Aligned_cols=36 Identities=6% Similarity=-0.030 Sum_probs=27.5
Q ss_pred CCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 021880 70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 70 ~~~~~~dlH~HT~~SDG~~sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
.+|..++|-.. .+|+++++.|.+.+.+.++++=-.+
T Consensus 30 ~G~~Vi~lG~~-------~p~e~~v~~a~~~~~d~v~lS~~~~ 65 (137)
T 1ccw_A 30 AGFNVVNIGVL-------SPQELFIKAAIETKADAILVSSLYG 65 (137)
T ss_dssp TTCEEEEEEEE-------ECHHHHHHHHHHHTCSEEEEEECSS
T ss_pred CCCEEEECCCC-------CCHHHHHHHHHhcCCCEEEEEecCc
Confidence 44555555443 5999999999999999999986543
No 179
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=20.83 E-value=1.6e+02 Score=25.02 Aligned_cols=50 Identities=16% Similarity=0.011 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC---C--hHHHHHHHHhCCCeEEEEeEE
Q 021880 87 YLSPSKLVERAHCNGVKVLALTDHDTMS---G--IPEAIETARRFGMKIIPGVEI 136 (306)
Q Consensus 87 ~~sp~eli~~A~~~Gl~~iaITDH~t~~---g--~~~~~~~~~~~~i~~i~GiEi 136 (306)
..++.++++.+.+.|++.|-++|-+... + ...+.+.++..+++++.+=-|
T Consensus 34 ~~~~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi 88 (247)
T 3tdn_A 34 GILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGA 88 (247)
T ss_dssp EEEHHHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCC
T ss_pred CCCHHHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCC
Confidence 4589999999999999999999986431 2 233444455578888776333
No 180
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=20.66 E-value=43 Score=30.36 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCChHHHHHHHHHcCCCEEEEec
Q 021880 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 297 (306)
Q Consensus 251 ~~~eevI~~I~~aGGiaVLAHP~~~~~~~~li~~l~~~GldGiEv~~ 297 (306)
|..+.+++.+++.+|++++-|.. ....+++.+.+.|+|++.+-+
T Consensus 217 p~~k~i~~~i~~~~g~~~i~~~~---g~~~~l~~l~~~g~d~~~~d~ 260 (338)
T 2eja_A 217 PYVNYLISELKDFSDTPVIYFFR---GSSSFIDLAVDYRADALSVDW 260 (338)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEES---SHHHHHHHHTTSCCSEEECCT
T ss_pred HHHHHHHHHHhhcCCCCEEEEcC---CcHHHHHHHHHcCCCEEEeCC
Confidence 44677899999876688999974 236789999999999887643
No 181
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A*
Probab=20.65 E-value=1.6e+02 Score=27.28 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=26.6
Q ss_pred EEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEe
Q 021880 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALT 108 (306)
Q Consensus 74 ~~dlH~HT~~S--DG~~sp~eli~~A~~~Gl~~iaIT 108 (306)
++|.|+|...+ +...+.....+.+.+.|+..+..+
T Consensus 102 lID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~ 138 (467)
T 1xrt_A 102 FIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCM 138 (467)
T ss_dssp EEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEEC
T ss_pred EEEEeecccCCCCCchhhHHHHHHHHHhCCeEEEEec
Confidence 88999998653 223457788899999999887654
No 182
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A 3fgc_B*
Probab=20.61 E-value=1.5e+02 Score=26.42 Aligned_cols=47 Identities=9% Similarity=-0.079 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCC-----C-hHHHHHH-HHhCCCeEEEEeEEE
Q 021880 91 SKLVERAHCNGVKVLALTDHDTMS-----G-IPEAIET-ARRFGMKIIPGVEIS 137 (306)
Q Consensus 91 ~eli~~A~~~Gl~~iaITDH~t~~-----g-~~~~~~~-~~~~~i~~i~GiEis 137 (306)
-++++.|.+.|++.+.+.||+... . +.-+-.+ +....|.+-+|+=+.
T Consensus 25 ~~~a~~AE~~Gfd~~w~~eh~~~~~~~~~~p~~~la~~A~~T~ri~lgt~v~~~ 78 (324)
T 1luc_B 25 LDTAHYVDQLKFDTLAVYENHFSNNGVVGAPLTVAGFLLGMTKNAKVASLNHVI 78 (324)
T ss_dssp HHHHHHHHTSSCCEEEECCCCSSSSCSCSCHHHHHHHHHHHCSSSEEEEEEEEC
T ss_pred HHHHHHHHHCCCCEEEeccCCCCCCCCCCCHHHHHHHHHHhcCceEEEEeeeeC
Confidence 357888889999999999997542 1 1111222 234678888887664
No 183
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.58 E-value=1e+02 Score=27.73 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=24.1
Q ss_pred CCEEEEeCCCCCCC--hHHHHHHHHHcCCCEEEEecCCC
Q 021880 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG 300 (306)
Q Consensus 264 GGiaVLAHP~~~~~--~~~li~~l~~~GldGiEv~~~~~ 300 (306)
|.++|+|+-+.... .-++.+.+.+.|.||+=+..|+.
T Consensus 76 grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy 114 (309)
T 3fkr_A 76 GRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYH 114 (309)
T ss_dssp TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCB
T ss_pred CCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 55777777664322 24556677777888877777764
No 184
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=20.49 E-value=1e+02 Score=27.88 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHcCCEEEEeCCCC--CCChHHHHHHHHHcCCCEEEE
Q 021880 250 EPLAEVAVQLIHRTGGLAVLAHPWA--LKNPAAIIRKLKDVGLHGLEV 295 (306)
Q Consensus 250 ~~~~eevI~~I~~aGGiaVLAHP~~--~~~~~~li~~l~~~GldGiEv 295 (306)
.++.+...++|..++|+.|--|+.. ..++.+.++.++++|+|-|=.
T Consensus 138 ~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILT 185 (287)
T 3iwp_A 138 HIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLT 185 (287)
T ss_dssp CBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEE
T ss_pred CcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHHcCCCEEEC
Confidence 3667778888888888888888762 235677788888888877643
No 185
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=20.37 E-value=1.5e+02 Score=20.62 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHhHHHhhhhhhccCCCC
Q 021880 23 GGGKKKMTAEQSLAFNSVTEWVYLDQSH 50 (306)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (306)
++++..+|.+|...|..++.. ..||
T Consensus 14 rr~Rt~ft~~Q~~~Le~~F~~---~~yp 38 (77)
T 1puf_A 14 RKKRCPYTKHQTLELEKEFLF---NMYL 38 (77)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH---CSSC
T ss_pred CCCCCCCCHHHHHHHHHHHhc---cCCC
Confidence 345567999999999988853 4455
No 186
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.27 E-value=1.5e+02 Score=26.66 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=26.5
Q ss_pred CCEEEEeCCCCCCC--hHHHHHHHHHcCCCEEEEecCCC
Q 021880 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG 300 (306)
Q Consensus 264 GGiaVLAHP~~~~~--~~~li~~l~~~GldGiEv~~~~~ 300 (306)
|.++|+|+-+.... .-++.+.+.+.|.||+=+..|+.
T Consensus 83 grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 121 (304)
T 3l21_A 83 DRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 121 (304)
T ss_dssp TTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 56888888765432 24567778888888888887764
No 187
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.16 E-value=51 Score=26.49 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCC
Q 021880 89 SPSKLVERAHCNGVKVLALTDHDT 112 (306)
Q Consensus 89 sp~eli~~A~~~Gl~~iaITDH~t 112 (306)
..-++++.|+++|.+.++||+...
T Consensus 97 ~~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 97 SVLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSCC
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCC
Confidence 345679999999999999999643
No 188
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A*
Probab=20.15 E-value=2.1e+02 Score=26.50 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=36.5
Q ss_pred eEEceeeeCCCC--C------------------------CCCCHHHHH-------HHHHHcCCcEEEE--ecCCCCCC--
Q 021880 73 VVFELHSHSNFS--D------------------------GYLSPSKLV-------ERAHCNGVKVLAL--TDHDTMSG-- 115 (306)
Q Consensus 73 ~~~dlH~HT~~S--D------------------------G~~sp~eli-------~~A~~~Gl~~iaI--TDH~t~~g-- 115 (306)
-++|.|+|...+ - ..++|+++. ..+.+.|+..+.. +-|....|
T Consensus 51 GfId~H~H~~~~~~rg~~~~~~~~~~~l~~wl~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~ 130 (453)
T 3mdu_A 51 GMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRS 130 (453)
T ss_dssp CEEEEEECGGGGGGTTTTCCCSSTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCC
T ss_pred cceecccchHHHhhccccccccCCCCcHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEecccccccc
Confidence 489999998433 1 134666653 3366789887663 23432221
Q ss_pred -------hHHHHHHHHhCCCeEEEE
Q 021880 116 -------IPEAIETARRFGMKIIPG 133 (306)
Q Consensus 116 -------~~~~~~~~~~~~i~~i~G 133 (306)
...+.+.+++.|+..+.+
T Consensus 131 ~~~~~~~~~~~~~a~~~~Gir~~~~ 155 (453)
T 3mdu_A 131 YADPAELSLRISRAASAAGIGLTLL 155 (453)
T ss_dssp CSSTTHHHHHHHHHHHHHTCEEEEE
T ss_pred ccchhhHHHHHHHHHHHhCCeEEEe
Confidence 234556677788887665
No 189
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=20.13 E-value=51 Score=27.59 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCcEEEEecC
Q 021880 90 PSKLVERAHCNGVKVLALTDH 110 (306)
Q Consensus 90 p~eli~~A~~~Gl~~iaITDH 110 (306)
+-++++.|+++|.+.|+||+-
T Consensus 147 ~i~~~~~ak~~G~~vIaIT~~ 167 (212)
T 2i2w_A 147 VIKAIAAAREKGMKVITLTGK 167 (212)
T ss_dssp HHHHHHHHHHHTCEEEEEEET
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 345666667777777777763
Done!