BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021881
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 80  VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKD 139
           VGL   L PV +Q  G+     +   + + +++     +PI  +    + ++ FM  ++ 
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 124

Query: 140 IXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKL 199
           +              +    L Q LR F     +TKP M    + ++ ++PLN+  V   
Sbjct: 125 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYG- 183

Query: 200 KLGVP 204
           K G P
Sbjct: 184 KFGAP 188


>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
           Stenotrophomonas Maltophilia
          Length = 741

 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 155 LLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLV 196
           L+ N L  P   + R ++  +P+ + TL A     PLNY ++
Sbjct: 465 LVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVI 506


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 33.1 bits (74), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 11/217 (5%)

Query: 17  SFSQVVEELKELWGMALPMTGMNIL-VFIRAVVSVLFXXXXXXXXXXXXXXXXXFTNITG 75
           SFS  ++E++ L  +ALPM    +  V I  V +V+                  F  +  
Sbjct: 5   SFSVFLKEIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATV-- 62

Query: 76  YSVLVGLASGLEPVCSQAYGS-KNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFM 134
           Y   +G+ + L P+ +Q YG+ K  +      Q +   L   I  + L+W  +     ++
Sbjct: 63  YITFMGIMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWL 122

Query: 135 GQDKDIXXXXXXXXXXXXPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYC 194
                +              +    + + L  +  S    + +M  +  A + +VPLNY 
Sbjct: 123 TLSDYVEGTMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYI 182

Query: 195 LVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLS 231
            V   K G+P  A+    C +  + +     WF  L+
Sbjct: 183 FVYG-KFGMP--ALGGAGCGVATMAV----FWFSALA 212


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,136,231
Number of Sequences: 62578
Number of extensions: 215865
Number of successful extensions: 388
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 4
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)