Query 021881
Match_columns 306
No_of_seqs 192 out of 2174
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.8E-35 3.9E-40 274.2 32.5 275 21-304 12-300 (455)
2 PRK10367 DNA-damage-inducible 100.0 1.8E-32 3.9E-37 253.9 33.2 275 22-304 5-291 (441)
3 PRK00187 multidrug efflux prot 100.0 3.7E-32 7.9E-37 253.7 31.9 276 20-304 4-295 (464)
4 PRK10189 MATE family multidrug 100.0 1E-31 2.2E-36 251.1 31.5 274 23-305 26-319 (478)
5 PRK09575 vmrA multidrug efflux 100.0 4.3E-30 9.4E-35 239.2 31.4 275 21-305 7-295 (453)
6 PRK01766 multidrug efflux prot 100.0 5.4E-29 1.2E-33 232.3 33.6 278 18-304 4-298 (456)
7 PRK00187 multidrug efflux prot 100.0 1.3E-26 2.7E-31 216.4 26.3 201 19-220 229-436 (464)
8 COG0534 NorM Na+-driven multid 100.0 2.7E-26 5.8E-31 213.0 25.8 204 15-220 230-435 (455)
9 PRK10189 MATE family multidrug 99.9 2.5E-25 5.4E-30 208.1 27.2 200 20-220 253-454 (478)
10 PRK01766 multidrug efflux prot 99.9 2.7E-25 5.8E-30 207.4 25.1 201 19-220 232-434 (456)
11 PRK09575 vmrA multidrug efflux 99.9 1.4E-24 3E-29 202.3 26.0 201 17-220 225-428 (453)
12 TIGR00797 matE putative efflux 99.9 1.1E-23 2.3E-28 189.3 30.2 259 34-304 1-275 (342)
13 KOG1347 Uncharacterized membra 99.9 7.2E-22 1.6E-26 182.7 28.5 265 21-303 23-307 (473)
14 TIGR01695 mviN integral membra 99.9 2.5E-21 5.5E-26 182.7 27.0 201 18-220 215-420 (502)
15 PRK10367 DNA-damage-inducible 99.9 2.7E-21 5.9E-26 179.3 25.1 191 23-220 229-423 (441)
16 PF01554 MatE: MatE; InterPro 99.9 2.1E-22 4.6E-27 161.6 5.4 160 34-194 1-162 (162)
17 PF03023 MVIN: MviN-like prote 99.8 2.3E-18 5E-23 160.1 27.6 200 19-220 191-395 (451)
18 TIGR02900 spore_V_B stage V sp 99.8 9.7E-19 2.1E-23 164.5 25.3 197 19-220 218-426 (488)
19 PRK15099 O-antigen translocase 99.8 1.3E-17 2.8E-22 154.0 26.2 197 17-220 206-404 (416)
20 COG0728 MviN Uncharacterized m 99.8 2.4E-16 5.2E-21 145.6 26.6 200 19-220 225-429 (518)
21 PRK10459 colanic acid exporter 99.8 4.7E-16 1E-20 146.6 26.5 196 19-220 200-397 (492)
22 TIGR01695 mviN integral membra 99.7 6.5E-15 1.4E-19 139.1 30.3 189 28-221 2-200 (502)
23 PRK15099 O-antigen translocase 99.7 2E-15 4.4E-20 139.4 25.2 258 28-303 3-275 (416)
24 COG2244 RfbX Membrane protein 99.7 2.3E-15 5E-20 141.4 24.1 185 21-210 208-394 (480)
25 TIGR02900 spore_V_B stage V sp 99.7 4.9E-15 1.1E-19 139.4 23.5 187 29-220 2-196 (488)
26 TIGR00797 matE putative efflux 99.6 1.9E-14 4.2E-19 129.2 18.3 133 18-151 208-341 (342)
27 KOG1347 Uncharacterized membra 99.6 2.5E-14 5.4E-19 132.7 11.2 231 11-262 232-466 (473)
28 PF03023 MVIN: MviN-like prote 99.3 4.4E-09 9.6E-14 98.1 28.3 169 56-227 5-181 (451)
29 COG0728 MviN Uncharacterized m 99.1 1.2E-07 2.6E-12 88.3 28.1 202 26-227 7-215 (518)
30 PF01943 Polysacc_synt: Polysa 99.1 6.4E-07 1.4E-11 77.3 27.9 248 29-302 2-263 (273)
31 PF13440 Polysacc_synt_3: Poly 98.9 2.5E-06 5.4E-11 72.8 26.6 162 45-220 3-165 (251)
32 PRK10459 colanic acid exporter 98.9 1.1E-06 2.4E-11 83.0 25.7 180 26-220 5-186 (492)
33 PF04506 Rft-1: Rft protein; 98.7 2.8E-06 6.1E-11 80.5 19.5 195 25-220 252-462 (549)
34 COG2244 RfbX Membrane protein 98.5 4.1E-05 8.9E-10 72.1 21.4 151 24-184 4-156 (480)
35 PF14667 Polysacc_synt_C: Poly 98.5 1.5E-06 3.3E-11 68.0 9.8 71 148-220 2-72 (146)
36 PF07260 ANKH: Progressive ank 98.1 0.0026 5.6E-08 55.3 22.7 167 22-196 7-180 (345)
37 KOG2864 Nuclear division RFT1 98.0 0.0005 1.1E-08 62.3 16.7 192 27-220 240-441 (530)
38 PF01943 Polysacc_synt: Polysa 97.9 9.9E-05 2.2E-09 63.5 10.3 73 21-94 200-273 (273)
39 PF13440 Polysacc_synt_3: Poly 97.3 0.002 4.4E-08 54.7 10.0 65 27-92 184-250 (251)
40 COG4267 Predicted membrane pro 81.1 44 0.00095 30.5 18.5 130 76-220 74-203 (467)
41 PF07260 ANKH: Progressive ank 62.3 36 0.00077 30.3 6.9 51 21-71 230-286 (345)
42 COG4267 Predicted membrane pro 52.7 1.9E+02 0.0041 26.6 13.3 94 100-197 320-414 (467)
43 PF04505 Dispanin: Interferon- 49.2 86 0.0019 21.7 6.5 39 82-120 36-74 (82)
44 PF03904 DUF334: Domain of unk 43.1 1.2E+02 0.0026 25.5 6.7 64 96-159 140-212 (230)
45 PF01554 MatE: MatE; InterPro 38.9 18 0.0004 27.9 1.5 35 270-304 18-52 (162)
46 COG1987 FliQ Flagellar biosynt 37.0 1.5E+02 0.0032 20.9 7.9 52 99-150 3-54 (89)
47 PF10337 DUF2422: Protein of u 34.7 3.9E+02 0.0085 25.1 13.5 35 14-48 5-39 (459)
48 PF03812 KdgT: 2-keto-3-deoxyg 29.1 4.1E+02 0.009 23.6 8.6 80 136-218 187-269 (314)
49 PF04506 Rft-1: Rft protein; 26.5 6E+02 0.013 24.6 13.9 144 32-175 7-162 (549)
50 PRK00159 putative septation in 26.2 1.6E+02 0.0034 20.7 4.2 39 33-71 34-74 (87)
51 PRK06010 fliQ flagellar biosyn 25.4 2.5E+02 0.0054 19.8 8.2 52 98-149 2-53 (88)
52 PRK15350 type III secretion sy 25.1 2.5E+02 0.0054 19.8 8.1 52 98-149 2-53 (88)
53 PRK02251 putative septation in 24.4 2.2E+02 0.0047 20.1 4.6 39 33-71 35-74 (87)
54 PF05975 EcsB: Bacterial ABC t 24.3 5.5E+02 0.012 23.4 18.3 40 98-137 89-130 (386)
55 PRK05700 fliQ flagellar biosyn 24.3 2.6E+02 0.0057 19.7 8.1 52 98-149 2-53 (89)
56 PF06781 UPF0233: Uncharacteri 22.8 1.5E+02 0.0034 20.8 3.7 40 33-72 34-75 (87)
57 TIGR01402 fliQ flagellar biosy 22.4 2.9E+02 0.0062 19.5 8.1 52 98-149 2-53 (88)
58 PF14184 YrvL: Regulatory prot 21.6 3.7E+02 0.0081 20.5 11.3 100 108-209 6-106 (132)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.8e-35 Score=274.22 Aligned_cols=275 Identities=20% Similarity=0.204 Sum_probs=235.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChh
Q 021881 21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWD 100 (306)
Q Consensus 21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~ 100 (306)
..+..|+++++++|++++++.+.+++.+|++++||+|++++|+.++++++..+. ..+..+++.+.++++||++|+||+|
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 566899999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881 101 LLSLSLQRMILILFFAIIPIS-LLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW 179 (306)
Q Consensus 101 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 179 (306)
++++..+++..++++++++.. +.+.+.++++.+++.++|+.+.+.+|+++..++.|+..++.++.+++|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 999999999999999997775 5699999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhh-cC-CChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHH
Q 021881 180 CTLVAVMFHVPLNYCLVMK-LK-LGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKA 257 (306)
Q Consensus 180 ~~~i~~~~~i~l~~~li~~-~~-~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
+++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++....+.+.-.. ......+..+++++..++
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 242 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRL--------LSLFKKKLLKPDRKLLKE 242 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchh--------hhhhhhhccCCCHHHHHH
Confidence 9999999999999999998 47 9999999999999999998844443332100 000001111233333332
Q ss_pred hhh-----------hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881 258 MKL-----------TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW 304 (306)
Q Consensus 258 ~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~ 304 (306)
..+ ........+...++.|++++|++++..+++++.+|+.+|+++|+
T Consensus 243 i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~ 300 (455)
T COG0534 243 ILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAV 300 (455)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 22333344445578899999999999999999999999999875
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=253.86 Aligned_cols=275 Identities=20% Similarity=0.226 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChh
Q 021881 22 VEELKELWGMALPMTGMNILVFIRAVVSVLFLGRL-GSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWD 100 (306)
Q Consensus 22 ~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~-g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~ 100 (306)
+++.|+++++++|.+++++.+.+.+.+|+.+++++ |++++|+.+++.++.++. ..+..+++.+.++++||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 46789999999999999999999999999999998 677899999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881 101 LLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW 179 (306)
Q Consensus 101 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 179 (306)
++++..++++.++++++++..+ ...+.++++.+++.|+|+.+.+.+|+++..++.|+..+..++.+++|+.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 9999999999999999988865 577889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchH---HHHH
Q 021881 180 CTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEA---EAMK 256 (306)
Q Consensus 180 ~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 256 (306)
.++++.++|+++++++++..++|+.|+++||++++.+.+++....+++.... ........+.+|++ +..+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~il~ 236 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKL-------RGISLEMLKTAWRGNFRRLLA 236 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccHHHhhhhhHHHHHHHHH
Confidence 9999999999999999998899999999999999999887743333221000 00000000111211 1111
Q ss_pred Hh-----hh--hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881 257 AM-----KL--TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW 304 (306)
Q Consensus 257 ~~-----~~--~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~ 304 (306)
.- +. ........+...++.|++++|+++++.++++++||+..|+++|+
T Consensus 237 ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~ 291 (441)
T PRK10367 237 LNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAV 291 (441)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 00 00 11122223333467899999999999999999999999999875
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.7e-32 Score=253.65 Aligned_cols=276 Identities=17% Similarity=0.190 Sum_probs=225.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh
Q 021881 20 QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW 99 (306)
Q Consensus 20 ~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~ 99 (306)
++++++|+++++++|.+++++.+.+...+|+.+++++|++++|+++++.++.++. ..+..|++++.++++||++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4667899999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881 100 DLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW 179 (306)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 179 (306)
|++++.++++..+.++++++..++..+.++++.+++.|||+.+.+.+|+++..++.|+..+...+++++|+.||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988866555779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhc----CCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeee-cccchHHH
Q 021881 180 CTLVAVMFHVPLNYCLVMKL----KLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLV-RTDWEAEA 254 (306)
Q Consensus 180 ~~~i~~~~~i~l~~~li~~~----~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (306)
.++++.++|++++|+|+++. ++|+.|+++|+++++....+.-...+++.-. ...+..++ ..+++++.
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 234 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPA--------YAAYPLRKGLSRPSRAA 234 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcch--------hhhhhhhccccCCCHHH
Confidence 99999999999999999864 5899999999999988776542111111000 00000000 01112222
Q ss_pred HHHhhh-----------hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881 255 MKAMKL-----------TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW 304 (306)
Q Consensus 255 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~ 304 (306)
.|+..+ ............++.|++++|+++++.++..+++++..+++.|.
T Consensus 235 ~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~ 295 (464)
T PRK00187 235 LRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAV 295 (464)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 01111112223356899999999999999999999999998875
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1e-31 Score=251.12 Aligned_cols=274 Identities=14% Similarity=0.112 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHH
Q 021881 23 EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL 102 (306)
Q Consensus 23 ~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~ 102 (306)
+.+|+++++++|.+++++.+.+...+|+.+++++|++++|+++++.++..+. ..+..|++++.++++||++|++|+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4699999999999999999999999999999999999999999999999987 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881 103 SLSLQRMILILFFAIIPISL-LWLNLETVMIFMG--QDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW 179 (306)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 179 (306)
++..+++..+++.++++..+ .+.++++++.++. .|+|+.+.+.+|+++..++.|+..+..++.+++|+.||++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 99999999999999998865 5788899999994 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhc----CCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeec--ccchHH
Q 021881 180 CTLVAVMFHVPLNYCLVMKL----KLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVR--TDWEAE 253 (306)
Q Consensus 180 ~~~i~~~~~i~l~~~li~~~----~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 253 (306)
+++++.++|++++++++++. ++|+.|+++|+++++.+..++..+.+++... ......+++ .+++.+
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 256 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFN--------PALRISLKSYFKPLNFA 256 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccC--------ccceeeeccccccCCHH
Confidence 99999999999999999764 7899999999999999987663222221000 000000000 011222
Q ss_pred HHHHhhh----hHHH-----H--HHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCCC
Q 021881 254 AMKAMKL----TSLE-----I--STFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGWG 305 (306)
Q Consensus 254 ~~~~~~~----~~~~-----~--~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~ 305 (306)
..++.-+ ...| . ...+...++.|++++|+++++.|++++.+++..|++.|+.
T Consensus 257 ~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~ 319 (478)
T PRK10189 257 IIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSAST 319 (478)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 1111 1 1122234567999999999999999999999999988753
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.3e-30 Score=239.19 Aligned_cols=275 Identities=15% Similarity=0.193 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh
Q 021881 21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW 99 (306)
Q Consensus 21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~ 99 (306)
+++..|++++++.|.+++++.+.+++.+|+.++++ .|+++++++++++++.++. ..+..+++.+.+++++|++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCH
Confidence 34678999999999999999999999999999999 5999999999999999987 889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881 100 DLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM 178 (306)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 178 (306)
|++++..+++..++++++++..+ .+.+.++++.+++.|+++.+.+.+|+++..++.|+..+.....+++|+.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999988865 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHHh
Q 021881 179 WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAM 258 (306)
Q Consensus 179 ~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
+.++.+.++|+++++++++..++|+.|+++|+++++.+.+++....++++- .......++.+++++..++.
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i 236 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSR---------ANIRLTLKELRFNWSLAPKI 236 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCC---------ceeEEeeccCCcCHHHHHHH
Confidence 999999999999999999988999999999999999999876332222110 00000000111222222221
Q ss_pred hh----h-------HHHHHHHHhhcCCCch-hhHHHHHHHHhhhhHHHHHhhhhhcCCC
Q 021881 259 KL----T-------SLEISTFNAGAGDTNE-EEEEEESKGLLLYGICFRLLDAFFSGWG 305 (306)
Q Consensus 259 ~~----~-------~~~~~~~~~~~~~~~~-~~~a~~~i~~~i~~~~~~~~~~~~~~~~ 305 (306)
-+ . .......+....++|+ +++|+++++.++..+++++..|++.|..
T Consensus 237 l~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~ 295 (453)
T PRK09575 237 VLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQ 295 (453)
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 11 1 1111122222345675 6899999999999999999999998763
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.97 E-value=5.4e-29 Score=232.28 Aligned_cols=278 Identities=17% Similarity=0.190 Sum_probs=225.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 021881 18 FSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSK 97 (306)
Q Consensus 18 ~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~ 97 (306)
.++.++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++.+..|.+||++|++
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 345677899999999999999999999999999999999999999999999998877 8889999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchH
Q 021881 98 NWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKP 176 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 176 (306)
|+|++++..++++.+.+.++++..+ ++.+.++++.+++.|+++.+.+..|+++.+++.|+..+..++++++++.||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 9999999999999999999988865 577788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhh----cCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeec-ccch
Q 021881 177 MMWCTLVAVMFHVPLNYCLVMK----LKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVR-TDWE 251 (306)
Q Consensus 177 ~~~~~~i~~~~~i~l~~~li~~----~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (306)
+++.++++.++|+++++++++. .++|+.|+++||.+++.+..++....+++.-. ........+ .+.+
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 234 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARR--------FRDFRLFKGLYKPD 234 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChh--------hhHHHhhccccCCC
Confidence 9999999999999999999864 25899999999999999998773332221100 000000000 0111
Q ss_pred HHHHHHhhh-----------hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881 252 AEAMKAMKL-----------TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW 304 (306)
Q Consensus 252 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~ 304 (306)
++..|+.-. ............+..|++++|+++++.++.++++++..|+++|.
T Consensus 235 ~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~ 298 (456)
T PRK01766 235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMAL 298 (456)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221110 01111122222345789999999999999999999999998764
No 7
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.96 E-value=1.3e-26 Score=216.43 Aligned_cols=201 Identities=20% Similarity=0.222 Sum_probs=189.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881 19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN 98 (306)
Q Consensus 19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~ 98 (306)
+.+++.+|+++|+++|.+++++.+.....+|+.+++++|++++|+++++.++.++. ..+..|++++.+++++|++|++|
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45678899999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Q 021881 99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQ--DK---DITAMAATYTLYALPDLLTNTLLQPLRVFLRSQK 172 (306)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 172 (306)
+|++++..+.+..++...+++..+ ++.+++++.+++++ |+ |+.+.+..|+++.+++.++.+++.++.+++||.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 999999999999999999988865 68899999999963 44 7899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 173 VTKPMMWCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 173 ~~~~~~~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
|+|.++++++++. ++++|++|++.+.+++|+.|+|+++.+++.+..+.
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~ 436 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVA 436 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999887899999999999999987754
No 8
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.95 E-value=2.7e-26 Score=213.03 Aligned_cols=204 Identities=20% Similarity=0.256 Sum_probs=193.7
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 021881 15 LPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAY 94 (306)
Q Consensus 15 ~~~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~ 94 (306)
++..+++++.+|+++++|+|.+++++.......+.+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++
T Consensus 230 ~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~ 308 (455)
T COG0534 230 KKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNL 308 (455)
T ss_pred hhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 334467889999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Q 021881 95 GSKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKV 173 (306)
Q Consensus 95 g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 173 (306)
|++|+|++++..+.+..++..+++...+ ++.+++++.++|++|+|+.+.+..++++.++..++++.+.+..+.+||.||
T Consensus 309 Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~ 388 (455)
T COG0534 309 GAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGD 388 (455)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999988854 699999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 174 TKPMMWCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 174 ~~~~~~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
+|.+++.++++. ++.+|+.|++.+.. +|..|.|++...++.+..++
T Consensus 389 ~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~ 435 (455)
T COG0534 389 AKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAIL 435 (455)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHH
Confidence 999999999999 88999999999865 99999999999999988855
No 9
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.95 E-value=2.5e-25 Score=208.13 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=189.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh
Q 021881 20 QVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW 99 (306)
Q Consensus 20 ~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~ 99 (306)
.+++.+|+++++|.|..+++....+...+.+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++|++|+
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4678999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881 100 DLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM 178 (306)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 178 (306)
|++|+..+.+..++.+.++...+ ++.+++++.++|++|+|+.+.+..++++.++..++++++.+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 99999999999999999888865 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 179 WCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 179 ~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
++++++. ++.+|+.+++....++|+.|+|++..+++.+..++
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~ 454 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVL 454 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 9999998 89999999988777899999999999999887754
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.94 E-value=2.7e-25 Score=207.43 Aligned_cols=201 Identities=17% Similarity=0.199 Sum_probs=191.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881 19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN 98 (306)
Q Consensus 19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~ 98 (306)
+++++.+|+++++++|.++++..+.....+++.+++++|++++|+++++.++.++. ..+..|++.+.++.++|++|++|
T Consensus 232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~ 310 (456)
T PRK01766 232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGR 310 (456)
T ss_pred CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 35678899999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHH
Q 021881 99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPM 177 (306)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 177 (306)
+|++++..+.+..++..++++..+ ++.+.+++.++|++|+|+.+.+..++++..++.++.+++.+..+++||.||++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 390 (456)
T PRK01766 311 TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI 390 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence 999999999999999999998854 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 178 MWCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 178 ~~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
+++++++. ++++|+.+++.+..++|+.|+++++.+++.+..++
T Consensus 391 ~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~ 434 (456)
T PRK01766 391 FFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAIL 434 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHH
Confidence 99999998 89999999998877899999999999999998865
No 11
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.94 E-value=1.4e-24 Score=202.25 Aligned_cols=201 Identities=17% Similarity=0.206 Sum_probs=187.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Q 021881 17 SFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGS-LELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYG 95 (306)
Q Consensus 17 ~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~-~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g 95 (306)
.++.+++..|+++++|.|..+++....+...+.+.+++++|+ +++|+++++.++.++. ..+..|++++.+|++||++|
T Consensus 225 ~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~G 303 (453)
T PRK09575 225 ELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFG 303 (453)
T ss_pred cCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhc
Confidence 345677889999999999999999999999999999999986 5899999999999998 99999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Q 021881 96 SKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQ-DKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKV 173 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 173 (306)
+||+|++++..+.+..+++..+++..+ ++.+++++..+|++ |||+.+.+..|+++.+++.++++++.+..+++||.||
T Consensus 304 a~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~ 383 (453)
T PRK09575 304 ARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQ 383 (453)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999865 68899999999995 7899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 174 TKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 174 ~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
++.+++.+..+.++++|+.+++.. .+|+.|+|+++.+++.+..++
T Consensus 384 ~~~~~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~ 428 (453)
T PRK09575 384 GGKALFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLV 428 (453)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHH
Confidence 999999999888889999999865 479999999999999988765
No 12
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.94 E-value=1.1e-23 Score=189.26 Aligned_cols=259 Identities=24% Similarity=0.297 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 021881 34 PMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILIL 113 (306)
Q Consensus 34 P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 113 (306)
|.+++++...+...+|+.+++++|++++++++++.++.++. ..+..+++++..|.++|++|++|+|++++..++...+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998887 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhH
Q 021881 114 FFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLN 192 (306)
Q Consensus 114 ~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~ 192 (306)
..++++..+ ++.+.+++..+++.|++..+++..++++++++.++.++..++.+++++.||++.+++.++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 999998865 6888899999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHHhhh----------
Q 021881 193 YCLVM-KLK-LGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKL---------- 260 (306)
Q Consensus 193 ~~li~-~~~-~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 260 (306)
+++++ .++ +|+.|+++++.+++.+..++.....++.. -.......+.+++++..|+.-+
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l 230 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAK---------KIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVI 230 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCC---------CcccccccccCCCHHHHHHHHHhCchHHHHHH
Confidence 99987 567 88999999999999998876332222100 0000000112333333332221
Q ss_pred ---hHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881 261 ---TSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW 304 (306)
Q Consensus 261 ---~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~ 304 (306)
......... ....|+++++++++..++.++.+++..+++.++
T Consensus 231 ~~~~~~~~~~~i--~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~ 275 (342)
T TIGR00797 231 LESLSFALLALL--VARLGSIALAAHQIALNVESLLFMPAFGFGIAV 275 (342)
T ss_pred HHHHHHHHHHHH--HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111 224688999999999999999999998887654
No 13
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.91 E-value=7.2e-22 Score=182.68 Aligned_cols=265 Identities=35% Similarity=0.535 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChh
Q 021881 21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWD 100 (306)
Q Consensus 21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~ 100 (306)
...+.|++.+++.|..+..+.+.....+++.++||+|+.++++.+++....+..++.+..|+..+..++.+|++|+++++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 36889999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHH
Q 021881 101 LLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWC 180 (306)
Q Consensus 101 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 180 (306)
......+++.......++|..+++.+.++++..+++|+++...+..|.++..+..+.+.....+..++|+++++.+..++
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeee--cccch---HH--
Q 021881 181 TLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLV--RTDWE---AE-- 253 (306)
Q Consensus 181 ~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~-- 253 (306)
.....++|+++++++++..++|..|++++..+++.....+ +..|.... +..|. .+
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~------------------l~~yi~~~~~~~~w~~~s~~~~ 244 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRI------------------LLLYAVLSGCLAAWSGFSGEFD 244 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHH------------------HHHHheecCchhhhhhhhHhhh
Confidence 9999999999999999999999999999999999998876 33333221 22222 11
Q ss_pred ----HHH---------HhhhhHHHHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcC
Q 021881 254 ----AMK---------AMKLTSLEISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSG 303 (306)
Q Consensus 254 ----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~ 303 (306)
..+ ..+++..|...+..|....++.++++++|+.++....||...+++-|
T Consensus 245 ~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a 307 (473)
T KOG1347|consen 245 SWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAA 307 (473)
T ss_pred hHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 110 13456778888888887778899999999999999999999888765
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.90 E-value=2.5e-21 Score=182.73 Aligned_cols=201 Identities=19% Similarity=0.174 Sum_probs=184.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 021881 18 FSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSK 97 (306)
Q Consensus 18 ~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~ 97 (306)
++.+++..|++++++.|..+++....+...+|+.+.+.+|++++++|+.+.++.+++...+..+++++..|.++|++|++
T Consensus 215 ~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~ 294 (502)
T TIGR01695 215 FNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEG 294 (502)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456789999999999999999999999999998666999999999999999988723467899999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Q 021881 98 NWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQ----DKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQK 172 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 172 (306)
|+|++++..++.......+++|..+ ++.++++++.++.+ |+|..+.+..++++++++.++.+++.++.+.+++.|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g 374 (502)
T TIGR01695 295 NWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARK 374 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcc
Confidence 9999999999999999999999865 68899999988865 567889999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 173 VTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 173 ~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
|+|.+++.+..+.++|+++++++++ .+|..|+++|+++++.+..++
T Consensus 375 ~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~ 420 (502)
T TIGR01695 375 DTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVL 420 (502)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 589999999999999998866
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=2.7e-21 Score=179.27 Aligned_cols=191 Identities=17% Similarity=0.110 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHH
Q 021881 23 EELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL 102 (306)
Q Consensus 23 ~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~ 102 (306)
+.+|+++|++.|..+++........+.+.+++++|++++|+|+++.++.++. +.+..|++++.+++++|++|+||+|++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 4789999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC---CchHHH
Q 021881 103 SLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQK---VTKPMM 178 (306)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~ 178 (306)
|+..+++..++...+.+..+ ++.+++++..+|++|+|+.+.+..++++.++..+......+..+.++|.+ |+|.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999988865 68889999999999999999999999999876443324444444455544 599999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 179 WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 179 ~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
++++++..+ .++..+ ++|+.|+|++..+++.+..++
T Consensus 388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~ 423 (441)
T PRK10367 388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLS 423 (441)
T ss_pred HHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHH
Confidence 999988642 122223 578999999999999888755
No 16
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.86 E-value=2.1e-22 Score=161.56 Aligned_cols=160 Identities=23% Similarity=0.394 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 021881 34 PMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILIL 113 (306)
Q Consensus 34 P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 113 (306)
|.+++++.+.+...+|+.+++++|++++++++++.++.++. ..+..|++++..+.+||++|++|+|++++..+++..+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHh
Q 021881 114 FFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV-MFHVPL 191 (306)
Q Consensus 114 ~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-~~~i~l 191 (306)
..++++..+ .+.+.+++..++++|+|+.+.+.+|+++..++.|+..+..+..++++|.||+|.+++.++++. ++++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 999999976 588999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHH
Q 021881 192 NYC 194 (306)
Q Consensus 192 ~~~ 194 (306)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 17
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.84 E-value=2.3e-18 Score=160.05 Aligned_cols=200 Identities=17% Similarity=0.198 Sum_probs=186.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881 19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN 98 (306)
Q Consensus 19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~ 98 (306)
..+.+..|++++...|..++.....+...+|+.+.+.+++..+++++.+.++.+++...+..++++...|..|++..++|
T Consensus 191 ~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d 270 (451)
T PF03023_consen 191 DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD 270 (451)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33456799999999999999999999999999999999999999999999999998567788999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Q 021881 99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMG----QDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKV 173 (306)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 173 (306)
.++.++..++++...+.+.+|.++ ++.+++|+++++. .|+|..+.+...+++++++.|+.++...+...+.+.+|
T Consensus 271 ~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~ 350 (451)
T PF03023_consen 271 WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGD 350 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999965 7999999997774 36777899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 174 TKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 174 ~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
+|.++..++++.++|+++++++.+ .+|..|.++|+.++..+.+++
T Consensus 351 ~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~ 395 (451)
T PF03023_consen 351 TKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALL 395 (451)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888 789999999999999998866
No 18
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.84 E-value=9.7e-19 Score=164.55 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=171.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh------hhHHHH----HHHHHHHHHHHHHHHHHHHhhHH
Q 021881 19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGS------LELAGG----ALSIGFTNITGYSVLVGLASGLE 87 (306)
Q Consensus 19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~------~~~a~~----~~~~~i~~l~~~~~~~gi~~a~~ 87 (306)
+.+++.+|++++++.|..++++...+...+|+.++++ +++ ++.+.+ +++.++.+++ ..+..+++++..
T Consensus 218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~ 296 (488)
T TIGR02900 218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALV 296 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHH
Confidence 3456789999999999999999999999999999987 432 122222 3556677777 778899999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 021881 88 PVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRV 166 (306)
Q Consensus 88 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 166 (306)
|.++|++|++|+|+.++..++...+...+++|..+ +..++++++.++.++++ +..++++.+++.++..+.....+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865 68889999988876543 46699999999999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 167 FLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 167 ~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
.+++.||+|.+++.++++.++|++++++++...++|+.|+++|+++++.+..++
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~ 426 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTIL 426 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988323789999999999999988876
No 19
>PRK15099 O-antigen translocase; Provisional
Probab=99.81 E-value=1.3e-17 Score=153.96 Aligned_cols=197 Identities=10% Similarity=0.021 Sum_probs=174.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Q 021881 17 SFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLG-RLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYG 95 (306)
Q Consensus 17 ~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~-~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g 95 (306)
+++.+++.+|+++++|.|..++++...+....|+.+++ ++|++++|.|+.+.++.+.+...+..+++++..|.++|+
T Consensus 206 ~~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~-- 283 (416)
T PRK15099 206 KPSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL-- 283 (416)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 34557888999999999999999999999999999997 599999999999999977443788999999999999995
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc
Q 021881 96 SKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVT 174 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 174 (306)
+|+|+.++..++.......++++..+ ++.++++++.++.+|+ ++.+.+++++.+++.++...+..+...+.+.+++
T Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~ 360 (416)
T PRK15099 284 -TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASL 360 (416)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999888888865 5799999999998776 5567779999999999888888887777788888
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 175 KPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 175 ~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
+......+...++++++++++++ .+|..|+++++++++.+..++
T Consensus 361 ~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~ 404 (416)
T PRK15099 361 RFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSL 404 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999998 689999999999999999876
No 20
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.78 E-value=2.4e-16 Score=145.60 Aligned_cols=200 Identities=17% Similarity=0.124 Sum_probs=185.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881 19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN 98 (306)
Q Consensus 19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~ 98 (306)
..+.+..|++.+...|..++....++...+|+.+.+.+.+..++.+..++++.+++...+..++++...|..|++..++|
T Consensus 225 ~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~ 304 (518)
T COG0728 225 GFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD 304 (518)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34447899999999999999999999999999999999999999999999999999678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Q 021881 99 WDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMG----QDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKV 173 (306)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 173 (306)
.++.++..+++.+....+.+|.+. +..+++|+++.+. .+++...++...+..+.++.++..+..++...+.+.+|
T Consensus 305 ~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d 384 (518)
T COG0728 305 WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARED 384 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999965 7999999997663 35667788999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 174 TKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 174 ~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
+|.|+++++++.++|+.+++.+.+ .+|..|.+.++.++.++++.+
T Consensus 385 ~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~l 429 (518)
T COG0728 385 TKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALL 429 (518)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999988777 678888999999998888766
No 21
>PRK10459 colanic acid exporter; Provisional
Probab=99.76 E-value=4.7e-16 Score=146.58 Aligned_cols=196 Identities=14% Similarity=0.152 Sum_probs=174.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 021881 19 SQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSK 97 (306)
Q Consensus 19 ~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~ 97 (306)
+.+++..|++++++.|...+++...+...+|+.++++ +|+++++.|+.+.++.+++...+...+++...|..++. ++
T Consensus 200 ~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~ 277 (492)
T PRK10459 200 HFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QD 277 (492)
T ss_pred eecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cC
Confidence 3456788999999999999999999999999999999 89999999999999998863555566788899999886 67
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchH
Q 021881 98 NWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKP 176 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 176 (306)
|.++.++.+++.......+++|..+ +..++++++.++.+++ ++.+...+++++++..+..........+++.||+|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~ 355 (492)
T PRK10459 278 DTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADL 355 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch
Confidence 8899999999999999999999865 6888899998776655 677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 177 MMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 177 ~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
++..+++...++++..+.+.. .+|+.|+++|+.+++.+.+..
T Consensus 356 ~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~ 397 (492)
T PRK10459 356 SFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTIL 397 (492)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888776 679999999999999888765
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.74 E-value=6.5e-15 Score=139.10 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhH-HHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHhcCCChhHHH
Q 021881 28 LWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLEL-AGGALSIGFTNITGYSVL--VGLASGLEPVCSQAYGSKNWDLLS 103 (306)
Q Consensus 28 ~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~-a~~~~~~~i~~l~~~~~~--~gi~~a~~~~~s~~~g~~~~~~~~ 103 (306)
+.|-+.-.+++++...+.+.+|..++++ +|+++. ++++++.++.++. ..+. .|++++..|...++.+++ |+++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~-~~~~~~~g~~~a~i~~~~~~~~~~--~~~~ 78 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFF-RRLFAEGAFNSAFVPVFTKAKKKE--KEAR 78 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHhhh--hHHH
Confidence 5677888899999999999999999999 999999 8999999998776 4443 368888878777664333 6788
Q ss_pred HHHHHHHHHHHHHHHH-HHH-HHHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 021881 104 LSLQRMILILFFAIIP-ISL-LWLNLETVMIFM--GQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMW 179 (306)
Q Consensus 104 ~~~~~~~~~~~~~~i~-~~~-~~~~~~~il~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 179 (306)
+............+.. ..+ .+.+++++..++ +.|++..+.+.+|+++..++.++..+..+.++++|+.+|++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence 7777777766555443 344 577888888888 456777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCChhhhH--HHHHHHHHHHHHHH
Q 021881 180 CTLVAVMFHVPLNYCLVMKLKLGVPGVA--MASVVCNLNMLKIG 221 (306)
Q Consensus 180 ~~~i~~~~~i~l~~~li~~~~~G~~Ga~--~a~~i~~~~~~~~~ 221 (306)
.+++..+++++..+++.. ++|..|++ +++++++.+..++.
T Consensus 159 ~~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~ 200 (502)
T TIGR01695 159 SPILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQ 200 (502)
T ss_pred HHHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence 999998888775544443 78999998 99999999887663
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.73 E-value=2e-15 Score=139.37 Aligned_cols=258 Identities=10% Similarity=0.008 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHH
Q 021881 28 LWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSL 106 (306)
Q Consensus 28 ~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~ 106 (306)
+.|-+.-...+++...+.+.+...+++| +|+++.+.++....+..+.......|++++....++|+ ++|+|+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 4566677788888889889999999999 99999999999999888773444788888889999988 78889999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 021881 107 QRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV 185 (306)
Q Consensus 107 ~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ 185 (306)
+.++...+..+++..+ .+.+.+++...+.+|++.. .+..+..+..++..+.....+.+|+.||++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQ----GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765 5888899988777777532 4666777767777888899999999999999999999999
Q ss_pred HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHHhhhh----
Q 021881 186 MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLT---- 261 (306)
Q Consensus 186 ~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 261 (306)
++|+.+ +++... ..|+.|+++|+++++.+..+...+.+++. .-....+.+.+++++..|+.-..
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~k~ll~~g~p~ 224 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRR----------GTIPLSYLKPSWDNGLAGQLGKFTLMA 224 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHc----------cceehHhhhccCCHHHHHHHHHHHHHH
Confidence 999887 444442 24999999999999998876532222210 00000001223333333322110
Q ss_pred -------HHHHHHHHhhc-CCCchhhHHHHHHHHhhhh-HHHHHhhhhhcC
Q 021881 262 -------SLEISTFNAGA-GDTNEEEEEEESKGLLLYG-ICFRLLDAFFSG 303 (306)
Q Consensus 262 -------~~~~~~~~~~~-~~~~~~~~a~~~i~~~i~~-~~~~~~~~~~~~ 303 (306)
........... ...|+++++.++++.++.. +..++..++..+
T Consensus 225 ~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a 275 (416)
T PRK15099 225 LITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVY 275 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111112 3679999999999999977 557887777654
No 24
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.72 E-value=2.3e-15 Score=141.44 Aligned_cols=185 Identities=23% Similarity=0.306 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh
Q 021881 21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW 99 (306)
Q Consensus 21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~ 99 (306)
..+.+|++++.+.|..++.....+.+.+|+.++++ +|+++++.|+.+.++.... ..+...++....|..++.+.++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 47899999999999999999999999999999999 8999999999999998887 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881 100 DLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM 178 (306)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 178 (306)
++.++..++........++|..+ +..+++++...+.+++ ++.+...+.+++++.++..+.......+++.|+++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999965 6888889998776665 33478899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHH
Q 021881 179 WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMAS 210 (306)
Q Consensus 179 ~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~ 210 (306)
+.+.++.++|+++++++++ .+|..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH
Confidence 9999999999999999998 78899999999
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.70 E-value=4.9e-15 Score=139.41 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHhcCCChhHHHHHH
Q 021881 29 WGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVL-VGLASGLEPVCSQAYGSKNWDLLSLSL 106 (306)
Q Consensus 29 l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~-~gi~~a~~~~~s~~~g~~~~~~~~~~~ 106 (306)
.|-+.|.+++++...+.+.+|+.+++| +|+++.++++.+..+..+. ..+. .|++++....++|+.|++|+|++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~-~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~ 80 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF-ITLTTGGLPVAISKFVAEASAKNDRKNIKKIL 80 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence 466899999999999999999999999 8999999999999998887 5554 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 021881 107 QRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAV 185 (306)
Q Consensus 107 ~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ 185 (306)
+.+..+.+..+++..+ ++.+.+++...+.+|++.. .++++..+..++..+.....+++|+.+|.|..+..+.++.
T Consensus 81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 156 (488)
T TIGR02900 81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQ 156 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHH
Confidence 9999999999988865 5777777777777776543 4788899999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhh-----cCCChhhhHHHHHHHHHHHHHH
Q 021881 186 MFHVPLNYCLVMK-----LKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 186 ~~~i~l~~~li~~-----~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
+++++++..++.. .+.|+.|+.+++.+++.+..++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~ 196 (488)
T TIGR02900 157 IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLY 196 (488)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9988776665542 2467888999999999888876
No 26
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.63 E-value=1.9e-14 Score=129.17 Aligned_cols=133 Identities=20% Similarity=0.294 Sum_probs=124.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 021881 18 FSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSK 97 (306)
Q Consensus 18 ~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~ 97 (306)
.+.+++..|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++++..|.+++++|++
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence 456778999999999999999999999999999999999999999999999999988 8999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHH
Q 021881 98 NWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYA 151 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~ 151 (306)
|+|+.++..+++....+.++++..+ ++.+++++.+++++||++.+++..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999865 68889999999999999999999988764
No 27
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.55 E-value=2.5e-14 Score=132.72 Aligned_cols=231 Identities=19% Similarity=0.199 Sum_probs=203.1
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 021881 11 YSHKLPSFSQVVEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGS--LELAGGALSIGFTNITGYSVLVGLASGLEP 88 (306)
Q Consensus 11 ~~~~~~~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~--~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~ 88 (306)
.++.|..++...+.++++++++.|..+....+.-...+.....|.+++ .++++.++..++.... +....+++.+.++
T Consensus 232 ~~~~w~~~s~~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~st 310 (473)
T KOG1347|consen 232 CLAAWSGFSGEFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVST 310 (473)
T ss_pred chhhhhhhhHhhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHH
Confidence 456676666568899999999999999999999999999999999875 5799999999999987 8999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 021881 89 VCSQAYGSKNWDLLSLSLQRMILILFFAIIPIS-LLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVF 167 (306)
Q Consensus 89 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 167 (306)
++++.+|++|++++|.........++..+.... .++.+.+.+...|+.|+++.+...+..+++++....++.+.++.+.
T Consensus 311 rv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gv 390 (473)
T KOG1347|consen 311 RVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGV 390 (473)
T ss_pred HHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhhe
Confidence 999999999999999999999999988888875 4688889999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHH-HHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeee
Q 021881 168 LRSQKVTKPMMWCTLVAV-MFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLV 246 (306)
Q Consensus 168 l~~~g~~~~~~~~~~i~~-~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (306)
.+|.|..+...++++... ++.+|....+.+..++|..|.|++...+..+... .......
T Consensus 391 a~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~--------------------~l~~~~~ 450 (473)
T KOG1347|consen 391 ARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTL--------------------VLAIVTA 450 (473)
T ss_pred EEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHH--------------------HHHHhee
Confidence 999999999999999999 8899999998877789998888877777444432 2233355
Q ss_pred cccchHHHHHHhhhhH
Q 021881 247 RTDWEAEAMKAMKLTS 262 (306)
Q Consensus 247 ~~~~~~~~~~~~~~~~ 262 (306)
+.+|+++..++.++..
T Consensus 451 ~tdW~~~~~~a~~~~~ 466 (473)
T KOG1347|consen 451 RTDWKNQAEKAFARII 466 (473)
T ss_pred eccHHHHHHHHHHHHH
Confidence 7999999988877653
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.31 E-value=4.4e-09 Score=98.07 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=141.2
Q ss_pred cChh-hHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Q 021881 56 LGSL-ELAGGALSIGFTNITGYSVL-VGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISL-LWLNLETVMI 132 (306)
Q Consensus 56 ~g~~-~~a~~~~~~~i~~l~~~~~~-~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~ 132 (306)
+|.. +..+|.++.++-+++...+. .+++++..|..++.. +++.|+.++..+....+..+..+.+++ .++++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665 57799999999998723444 468999999999999 889999999999988888777777755 5889999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCC---hhhhH
Q 021881 133 FM--GQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLG---VPGVA 207 (306)
Q Consensus 133 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G---~~Ga~ 207 (306)
.+ +.|++..+.+.+.+++..+..++.++..++.+++|+.+|...+....++.++.-++..+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 88 457899999999999999999999999999999999999999999888887766665444444 567 88999
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 021881 208 MASVVCNLNMLKIGFSGLWF 227 (306)
Q Consensus 208 ~a~~i~~~~~~~~~~~~~~~ 227 (306)
++.+++..+..++..+..++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~ 181 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRR 181 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876555553
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.14 E-value=1.2e-07 Score=88.33 Aligned_cols=202 Identities=14% Similarity=0.107 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChh-hHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHhcCCChhHH
Q 021881 26 KELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSL-ELAGGALSIGFTNITGYSVLV-GLASGLEPVCSQAYGSKNWDLL 102 (306)
Q Consensus 26 k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~-~~a~~~~~~~i~~l~~~~~~~-gi~~a~~~~~s~~~g~~~~~~~ 102 (306)
++++|.+.-.+..++..-+.+.+-..+++. +|.. ...++.+++++-|++--.+.. +++++..|...++..+++.|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 345566666667777777777775555555 8885 688999999999988444444 4799999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHH-HHcCC--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881 103 SLSLQRMILILFFAIIPISL-LWLNLETVM-IFMGQ--DKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM 178 (306)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~il-~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 178 (306)
++..+........+.+.+++ ..++.++++ ..+.. |++....+....++..|..++.++.....+.+++.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 88888887666666666654 577777888 44443 344444788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhh
Q 021881 179 WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWF 227 (306)
Q Consensus 179 ~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~ 227 (306)
+.-+.-++.-+...+.+.++.+.-..+.++++.++-+.+.++.++.+|+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~ 215 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRK 215 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777766666666544347788999999999999998777775
No 30
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.06 E-value=6.4e-07 Score=77.26 Aligned_cols=248 Identities=17% Similarity=0.145 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHH
Q 021881 29 WGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQ 107 (306)
Q Consensus 29 l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~ 107 (306)
+|-+.-...+++...+.+.+...++.| +|+++.+.++....+.++.......|++++.....++...+ .++.++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 456677788889999999999999999 99999999999999998873444788999988888887433 344444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 021881 108 RMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMF 187 (306)
Q Consensus 108 ~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~ 187 (306)
.......+.++...+... +...+..++ ... .+........+..........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILL----IASFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333322222 212344333 221 122222222257888888999999999999999999999888
Q ss_pred HHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhhhhhhheeeecccchHHHHHHhhhhHH----
Q 021881 188 HVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKIGFSGLWFGLLSAQAACAVSILYVVLVRTDWEAEAMKAMKLTSL---- 263 (306)
Q Consensus 188 ~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 263 (306)
.+++...+... +.++.+..++..++..+..++......+. .+..+.+.+++..++..+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK--------------LRPRFSFFSKKFFKEILRFGLPLFL 216 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HcccccccchHHHHHHHHHHHHHHH
Confidence 88777666654 34578888888888887765521111110 001111111222222111110
Q ss_pred ---------HHHHHHhhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhc
Q 021881 264 ---------EISTFNAGAGDTNEEEEEEESKGLLLYGICFRLLDAFFS 302 (306)
Q Consensus 264 ---------~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~ 302 (306)
....+.. ..-.|+++++-++++.++.....++..++.+
T Consensus 217 ~~~~~~~~~~~d~~ii-~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~ 263 (273)
T PF01943_consen 217 SSLLSWLYSQIDRLII-GYFLGPEAVGIYSVAYRLASAISFLLSSIST 263 (273)
T ss_pred HHHHHHHHHHhHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000100 1124888999999999999988888877664
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.94 E-value=2.5e-06 Score=72.80 Aligned_cols=162 Identities=18% Similarity=0.228 Sum_probs=111.4
Q ss_pred HHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021881 45 RAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLL 123 (306)
Q Consensus 45 ~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 123 (306)
.+.+...+++| +|+++.|.|+....+..+.......|+.+.... ..++|+++.++..+.......+.++...++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888 999999999999999887723334555554433 234666777777776665554444443322
Q ss_pred HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCCh
Q 021881 124 WLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGV 203 (306)
Q Consensus 124 ~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~ 203 (306)
...+...+ ++++.. .++....+..+.........+.+++.+|.+..........++...+...+... +.+.
T Consensus 78 ---~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPELF----WLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHh-CChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 11111233 444332 36667778888899999999999999999999999999988775544444433 4478
Q ss_pred hhhHHHHHHHHHHHHHH
Q 021881 204 PGVAMASVVCNLNMLKI 220 (306)
Q Consensus 204 ~Ga~~a~~i~~~~~~~~ 220 (306)
.+..++..++..+..++
T Consensus 149 ~~~~~~~~~~~~~~~~~ 165 (251)
T PF13440_consen 149 WSILLAFIISALLALLI 165 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877654
No 32
>PRK10459 colanic acid exporter; Provisional
Probab=98.92 E-value=1.1e-06 Score=82.98 Aligned_cols=180 Identities=11% Similarity=0.072 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHHH
Q 021881 26 KELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLSL 104 (306)
Q Consensus 26 k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~ 104 (306)
++..+-+....++++.....+.+....++| +|+++.+.++.+..+.++.......|++++.. |. .+++. +
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~----~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH----L 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH----H
Confidence 456666777888999999999999999999 99999999999999988763344456766542 22 12222 3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 021881 105 SLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLV 183 (306)
Q Consensus 105 ~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i 183 (306)
............++...+ .+.+.+++...+ ++|+.. ..+++.++..++..+.....+.++...+.+.......+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPELA----PLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhhH----HHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 334445555666655544 455555555554 455433 47788888888888999999999999999998888888
Q ss_pred HHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 184 AVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 184 ~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
..+........+.. .+.|+.+..++..++..+..++
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~ 186 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLL 186 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHH
Confidence 87777766665544 3788999999999888776543
No 33
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.68 E-value=2.8e-06 Score=80.51 Aligned_cols=195 Identities=12% Similarity=0.039 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCh--
Q 021881 25 LKELWGMALPMTGMNILVFIRAVVSVLFLGR---LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNW-- 99 (306)
Q Consensus 25 ~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~---~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~-- 99 (306)
-++.++.......+.+...+.+--|.+++.. .+.++.|.|++++++.++..-.+...+-.+.-...++....++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678889999999999999999999999998 45678999999999999987888889999999999998755433
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q 021881 100 -------DLLSLSLQRMILILFFAIIPISLL-WLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQ 171 (306)
Q Consensus 100 -------~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 171 (306)
+++.+.+...+++...+++++..+ ...++.++.++.+++=....+...+++++...|+.+++.++..+.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 456777888888888888777554 777788887775443233345679999999999999999999999998
Q ss_pred CCchHHHH---HHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 172 KVTKPMMW---CTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 172 g~~~~~~~---~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
.+.+-... .+.+..++.+..+++++.+ ++|..|..+|+++.+.+..+.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~y 462 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIY 462 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHH
Confidence 87655443 3344446778888999887 799999999999998888766
No 34
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.47 E-value=4.1e-05 Score=72.06 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHH
Q 021881 24 ELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL 102 (306)
Q Consensus 24 ~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~ 102 (306)
..++..|-+.-...+++...+...+....++| +|+++.+.++.+..+..++......|+..+....++++.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45677788888889999999999999999999 99999999999999999984444489999999999998877766666
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 021881 103 SLS-LQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCT 181 (306)
Q Consensus 103 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 181 (306)
+.. ...........+.+.........+. +++ ....+++..++.+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 666 5555555555555544333333332 333 33377889999999999999999999999999998884
Q ss_pred HHH
Q 021881 182 LVA 184 (306)
Q Consensus 182 ~i~ 184 (306)
..+
T Consensus 154 ~~~ 156 (480)
T COG2244 154 VSS 156 (480)
T ss_pred HHH
Confidence 444
No 35
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.46 E-value=1.5e-06 Score=68.02 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=67.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 148 TLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 148 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
+++.+++.++..+.....+.+++.||+|..++.++++.++|+++++++++ ++|..|+++|+.+++...+.+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~ 72 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFIL 72 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999988 799999999999999998866
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.14 E-value=0.0026 Score=55.28 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh---hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 021881 22 VEELKELWGMALPMTGMNILVFIRAVVSVLFLGRLGSL---ELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKN 98 (306)
Q Consensus 22 ~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~~g~~---~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~ 98 (306)
...+.++.++-.|..++.+...+...+.+.-+++-.++ .+|+|+++..+.-++ ..+...+-.....++-+ +
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHhcc-----h
Confidence 35778899999999999999999999999999884332 499999999998887 78887777666666533 2
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHH-HHhH-HHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc
Q 021881 99 WDLLSLSLQRMILILFFA-IIPISLL-WLNL-ETVM-IFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVT 174 (306)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~-~i~~~~~-~~~~-~~il-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 174 (306)
.+ ++....++..+... .....++ +--. ..++ +.++.+|++.+.++..+.++.+.-.++++....++++-=.+++
T Consensus 81 rs--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s 158 (345)
T PF07260_consen 81 RS--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS 158 (345)
T ss_pred hh--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence 22 22222222222222 2222222 2222 3333 6778999999999999999999999999999999999877777
Q ss_pred hHHHHHHHHHHHHHHHhHHHHH
Q 021881 175 KPMMWCTLVAVMFHVPLNYCLV 196 (306)
Q Consensus 175 ~~~~~~~~i~~~~~i~l~~~li 196 (306)
......++...+..+++..++.
T Consensus 159 ~iV~~aSI~~v~~qvV~v~~ll 180 (345)
T PF07260_consen 159 WIVGSASIADVIAQVVLVAILL 180 (345)
T ss_pred eEeehHHHHHHHHHHHHHHHHH
Confidence 7777777766666666555555
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.0005 Score=62.27 Aligned_cols=192 Identities=9% Similarity=0.042 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCChhHHH
Q 021881 27 ELWGMALPMTGMNILVFIRAVVSVLFLGR---LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLLS 103 (306)
Q Consensus 27 ~~l~~~~P~~~~~~~~~~~~~~~~~~i~~---~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~g~~~~~~~~ 103 (306)
+..+.......+.+...+.+--|.++++. ++-++.|.|.+.+++.++.+-.+...+-.......+|....++.|+.|
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k 319 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence 34445555666777777778888888873 566788999999999998878888899999999999988777776666
Q ss_pred HHHH---HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH-
Q 021881 104 LSLQ---RMILILFFAIIPISLL-WLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM- 178 (306)
Q Consensus 104 ~~~~---~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~- 178 (306)
+... ..++....+++..+.. ...+++.+.++++++=....+...+++++...|+.+++.+..++..+.++.+-.-
T Consensus 320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~ 399 (530)
T KOG2864|consen 320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDK 399 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHh
Confidence 6554 4444455555444333 5666777787766443333444689999999999999999999999987655443
Q ss_pred --HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 179 --WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 179 --~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
+..+...++.++++|+++. .+|..|.-+|.++.+.+....
T Consensus 400 ~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIly 441 (530)
T KOG2864|consen 400 HNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILY 441 (530)
T ss_pred cccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHH
Confidence 3445555778889999998 467788888888887766654
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.91 E-value=9.9e-05 Score=63.48 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 021881 21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAY 94 (306)
Q Consensus 21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~~~~~gi~~a~~~~~s~~~ 94 (306)
+++..|++++.+.|..++++...+....|+.++++ .|++++|.|+++.++.... ..+...+.+...|..++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999 8999999999999999998 9999999999999999863
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.32 E-value=0.002 Score=54.73 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHH
Q 021881 27 ELWGMALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNITGY-SVLVGLASGLEPVCSQ 92 (306)
Q Consensus 27 ~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~~~-~~~~gi~~a~~~~~s~ 92 (306)
+.++.+.|..++++........|.++++. +|++++|.|+++.++...+ . .+..++++...|..+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~-~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLP-ASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence 37999999999999999999999999999 9999999999999999987 6 8999999999999887
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=81.05 E-value=44 Score=30.50 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=88.3
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhH
Q 021881 76 YSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLYALPDL 155 (306)
Q Consensus 76 ~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~ 155 (306)
..+..|+....+-.+|...=++|++++...+.-...+....+..+.. ++-...+|+. ..|=...+...
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~s-----i~yk~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYS-----IVYKILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchh-----HHHHHHHHHHH
Confidence 44556777778888888777777777777666555544444433321 1111122221 11333444555
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 021881 156 LTNTLLQPLRVFLRSQKVTKPMMWCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVVCNLNMLKI 220 (306)
Q Consensus 156 ~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i~~~~~~~~ 220 (306)
...+..-....++.+.+|.|.....-.++.++.+.+..++-. .+..|.-++..++.......
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l 203 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFL 203 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHH
Confidence 666777778889999999999999999999999988887764 68999999999988877655
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=62.32 E-value=36 Score=30.29 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-----hhHHHHHHHHHHH
Q 021881 21 VVEELKELWGMALPMTGMNILVFIRAVVSVLFLGR-LGS-----LELAGGALSIGFT 71 (306)
Q Consensus 21 ~~~~~k~~l~~~~P~~~~~~~~~~~~~~~~~~i~~-~g~-----~~~a~~~~~~~i~ 71 (306)
+...+++++++.+|.+.....+.+...+.+.+++| +|. +++|.....+++.
T Consensus 230 ~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvg 286 (345)
T PF07260_consen 230 DSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVG 286 (345)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCC
Confidence 34578999999999999999999999999999999 754 3445444444443
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=52.68 E-value=1.9e+02 Score=26.61 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 021881 100 DLLSLSLQRMILILFFAIIPISL-LWLNLETVMIFMGQDKDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMM 178 (306)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 178 (306)
+++...+++...-..-+-...++ .+.+++.+..+++-++-. .+..++-..+.-.+.....+-...--.++-+..+
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l 395 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44445555555555555555554 577778888888765533 3356666666666655555555555566667777
Q ss_pred HHHHHHHHHHHHhHHHHHh
Q 021881 179 WCTLVAVMFHVPLNYCLVM 197 (306)
Q Consensus 179 ~~~~i~~~~~i~l~~~li~ 197 (306)
..+..-.+.|-++.+++..
T Consensus 396 ~~t~~fli~N~ilT~i~l~ 414 (467)
T COG4267 396 ELTALFLISNGILTFIFLE 414 (467)
T ss_pred hhhhHHHHHhHHHHHHHHH
Confidence 7777777888888888765
No 43
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=49.18 E-value=86 Score=21.66 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 021881 82 LASGLEPVCSQAYGSKNWDLLSLSLQRMILILFFAIIPI 120 (306)
Q Consensus 82 i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 120 (306)
++.-....+-..+.+||++.+++.-+++..++.+-.+..
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 344445566667789999999999998888875544443
No 44
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=43.14 E-value=1.2e+02 Score=25.47 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCH---------HHHHHHHHHHHHHHhhHHHHH
Q 021881 96 SKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDK---------DITAMAATYTLYALPDLLTNT 159 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~---------~~~~~~~~~l~i~~~~~~~~~ 159 (306)
-++++...+.+..++...+++-+++++++....++..+++.|. +..+-...|+++++.+.|...
T Consensus 140 ~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 140 HEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 3455555556666655555544444555555556666554321 122334556776666666543
No 45
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=38.94 E-value=18 Score=27.86 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=30.5
Q ss_pred hhcCCCchhhHHHHHHHHhhhhHHHHHhhhhhcCC
Q 021881 270 AGAGDTNEEEEEEESKGLLLYGICFRLLDAFFSGW 304 (306)
Q Consensus 270 ~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~ 304 (306)
...++.|++++++++++.++.++.+++..++++|.
T Consensus 18 ~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~ 52 (162)
T PF01554_consen 18 IFVGRLGPEALAAYGIASSIFSILFMLIFGLATAL 52 (162)
T ss_dssp HCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 34456799999999999999999999999998774
No 46
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.99 E-value=1.5e+02 Score=20.92 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHH
Q 021881 99 WDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTLY 150 (306)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~i 150 (306)
.+.+-+..+.+.+..+.++.|..+.....+-+++.|-.--++.|++-.+++=
T Consensus 3 ~~~~l~i~~~ai~~~L~l~~P~ll~alvvGLvIsifQA~TQIqEqTLsFiPK 54 (89)
T COG1987 3 EEDVLDIGQEAIWLVLMLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPK 54 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4667788899999999999998887777777778776555667777666643
No 47
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=34.74 E-value=3.9e+02 Score=25.07 Aligned_cols=35 Identities=17% Similarity=-0.088 Sum_probs=26.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021881 14 KLPSFSQVVEELKELWGMALPMTGMNILVFIRAVV 48 (306)
Q Consensus 14 ~~~~~~~~~~~~k~~l~~~~P~~~~~~~~~~~~~~ 48 (306)
.|...+.|++.+|.++|-++|..+..++..+....
T Consensus 5 ~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~ 39 (459)
T PF10337_consen 5 AWLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVA 39 (459)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 34444568999999999999999988877655443
No 48
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=29.13 E-value=4.1e+02 Score=23.62 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHcCCchHHH--HHHHHHHHHHHHhHHHHHhhcCCChhhhHHHHHH
Q 021881 136 QDKDITAMAATYTLYALPDLLT-NTLLQPLRVFLRSQKVTKPMM--WCTLVAVMFHVPLNYCLVMKLKLGVPGVAMASVV 212 (306)
Q Consensus 136 ~~~~~~~~~~~~l~i~~~~~~~-~~~~~~~~~~l~~~g~~~~~~--~~~~i~~~~~i~l~~~li~~~~~G~~Ga~~a~~i 212 (306)
-|+|..+.-.+-...+.+.+-+ .+-..-+...+++ |-+...+ ...++........+-.+.. +-|..|++.+++.
T Consensus 187 LD~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~a-Gl~GIlLgv~~~~vtg~~~~~~dr~i~~--~~g~aG~A~sstA 263 (314)
T PF03812_consen 187 LDPDFRKFLAPGVPILIPFFGFALGAGINLSNIIKA-GLSGILLGVIVVVVTGIPLYLADRLILK--GNGVAGAAISSTA 263 (314)
T ss_pred CCHHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHh-CcchHHHHHHHHHHHhHHHHHHHHHHcC--CCCceeehHHhhh
Confidence 4777666544444444443332 2333334555553 2222221 1122222322322222222 5689999999999
Q ss_pred HHHHHH
Q 021881 213 CNLNML 218 (306)
Q Consensus 213 ~~~~~~ 218 (306)
++.+..
T Consensus 264 Gnavat 269 (314)
T PF03812_consen 264 GNAVAT 269 (314)
T ss_pred hhhhhh
Confidence 887664
No 49
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=26.46 E-value=6e+02 Score=24.65 Aligned_cols=144 Identities=14% Similarity=0.080 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021881 32 ALPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFTNIT-GYSVLVGLASGLEPVCSQAYGSKNWDLLSLSLQRM 109 (306)
Q Consensus 32 ~~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~l~-~~~~~~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~ 109 (306)
+.-.++.|+..-+.+++.+.++-| ++++..|..++=..+..-. .+.-=.++..+....-.+...++|.++..+..+..
T Consensus 7 as~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~wls 86 (549)
T PF04506_consen 7 ASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLWLS 86 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccccc
Confidence 445666777777777776666655 9999888775544443222 13333677777666544442233444555544444
Q ss_pred HHHHHHHHHHHHHHHH----hHHHHH--HHc-CCCHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCch
Q 021881 110 ILILFFAIIPISLLWL----NLETVM--IFM-GQDKD---ITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTK 175 (306)
Q Consensus 110 ~~~~~~~~i~~~~~~~----~~~~il--~~~-~~~~~---~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 175 (306)
.....+..++...+++ .+..+. .+. ...++ ..+.....+.+...+.....+.+.+-...|..-+.+
T Consensus 87 ~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~ 162 (549)
T PF04506_consen 87 VPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFK 162 (549)
T ss_pred CcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Confidence 4444444332222211 111111 111 11111 123334455566666666666666544444444333
No 50
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=26.17 E-value=1.6e+02 Score=20.75 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cC-hhhHHHHHHHHHHH
Q 021881 33 LPMTGMNILVFIRAVVSVLFLGR-LG-SLELAGGALSIGFT 71 (306)
Q Consensus 33 ~P~~~~~~~~~~~~~~~~~~i~~-~g-~~~~a~~~~~~~i~ 71 (306)
.|.++..++.-+...+..++.+. +. -++++.++++--+.
T Consensus 34 ~~~m~glm~~GllWlvvyYl~~~~~P~m~~lG~WN~~IGFg 74 (87)
T PRK00159 34 VVLMLGLMLIGLAWLVVNYLAGPAIPWMADLGPWNYAIGFA 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccCchhHHHHHH
Confidence 36777777777777777777654 44 46778876655543
No 51
>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=25.40 E-value=2.5e+02 Score=19.81 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHH
Q 021881 98 NWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTL 149 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~ 149 (306)
+.+.+-+..+++++..+.++.|..+.....+-+++++-.--++.|++-.+.+
T Consensus 2 ~~~~~~~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~TQIqEqTLsFvP 53 (88)
T PRK06010 2 NEADALDIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQIQEMTLTFVP 53 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3567788889999999999999877777777777777544455555555543
No 52
>PRK15350 type III secretion system protein SsaS; Provisional
Probab=25.11 E-value=2.5e+02 Score=19.78 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=37.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHH
Q 021881 98 NWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTL 149 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~ 149 (306)
+.+.+-+..+++++..+.++.|..+.....+.+++++-.--++.|++-.+.+
T Consensus 2 ~~~~v~~l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQIQEqTLsFvP 53 (88)
T PRK15350 2 NDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMI 53 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778889999999999999877777777777777544455555554543
No 53
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=24.35 E-value=2.2e+02 Score=20.06 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHH
Q 021881 33 LPMTGMNILVFIRAVVSVLFLGR-LGSLELAGGALSIGFT 71 (306)
Q Consensus 33 ~P~~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~ 71 (306)
.|.++..++.-+...+..++.+. +.-.+++.++++--+.
T Consensus 35 ~~~m~~lm~~Gl~WlvvyYl~~~~~P~~~lG~WN~~IGfg 74 (87)
T PRK02251 35 VPLFVALMIIGLIWLVVYYLSNGSLPIPALGAWNLVIGFG 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCCcCcccccchhHHHHHH
Confidence 36777777777777777666554 6666778776555443
No 54
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=24.33 E-value=5.5e+02 Score=23.44 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHH-HcCCC
Q 021881 98 NWDLLSLSLQRMILILFFAIIPIS-LLWLNLETVMI-FMGQD 137 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~-~~~~~ 137 (306)
+.++++++.+++...+........ ++....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 457899999999999999988874 45666667665 44433
No 55
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated
Probab=24.26 E-value=2.6e+02 Score=19.72 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=37.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHH
Q 021881 98 NWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTL 149 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~ 149 (306)
+.+.+-+..+++++..+.++.|..+.....+-+++++-.--++.|++-.+.+
T Consensus 2 ~~~~~~~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~TQIqEqTLsFvP 53 (89)
T PRK05700 2 TPESVMDLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQINEQTLSFIP 53 (89)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3467778889999999999999877767777777777544455555555543
No 56
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.78 E-value=1.5e+02 Score=20.79 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cChhhHHHHHHHHHHHH
Q 021881 33 LPMTGMNILVFIRAVVSVLFLGR--LGSLELAGGALSIGFTN 72 (306)
Q Consensus 33 ~P~~~~~~~~~~~~~~~~~~i~~--~g~~~~a~~~~~~~i~~ 72 (306)
.|.++..++.-+...+..++.+. ..-.+++.++++--+..
T Consensus 34 ~p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg~ 75 (87)
T PF06781_consen 34 APLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFGL 75 (87)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHHH
Confidence 47788888877777777777766 56677888776655443
No 57
>TIGR01402 fliQ flagellar biosynthetic protein FliQ. This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.
Probab=22.35 E-value=2.9e+02 Score=19.48 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHH
Q 021881 98 NWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAATYTL 149 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~ 149 (306)
+.+.+-+..+++++..+.++.|..+.....+-+++++-.--++.|++-.+.+
T Consensus 2 ~~~~~~~l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~TQIqEqTLsFvP 53 (88)
T TIGR01402 2 TEETVLDLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIP 53 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3466778889999999999999877777777777777544455565555543
No 58
>PF14184 YrvL: Regulatory protein YrvL
Probab=21.65 E-value=3.7e+02 Score=20.49 Aligned_cols=100 Identities=10% Similarity=0.235 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCC-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 021881 108 RMILILFFAIIPISLLWLNLETVMIFMGQD-KDITAMAATYTLYALPDLLTNTLLQPLRVFLRSQKVTKPMMWCTLVAVM 186 (306)
Q Consensus 108 ~~~~~~~~~~i~~~~~~~~~~~il~~~~~~-~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~~ 186 (306)
.....++.+.++.+.......-+.+++|-+ +......--.+.....+.|+.....++...+.-.+-+|... ......
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHHH
Confidence 333444444444455566666777888744 23334444455667778888888877766666664444432 223336
Q ss_pred HHHHhHHHHHhhcCCChhhhHHH
Q 021881 187 FHVPLNYCLVMKLKLGVPGVAMA 209 (306)
Q Consensus 187 ~~i~l~~~li~~~~~G~~Ga~~a 209 (306)
+...+++.-++..+.=+.+..+.
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is 106 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISIS 106 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeC
Confidence 66677777666544333333333
Done!