Query 021881
Match_columns 306
No_of_seqs 192 out of 2174
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 10:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b60a2 f.37.1.1 (A:10-328) Mu 9.5 3.1E+02 0.023 19.7 12.1 24 276-299 268-291 (319)
2 d2jeka1 a.255.1.1 (A:6-145) Hy 8.0 3E+02 0.022 18.5 4.8 91 88-180 46-137 (140)
3 d1lghb_ f.3.1.1 (B:) Light-har 7.8 68 0.005 17.0 1.0 29 98-126 10-39 (43)
4 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.2 1.6E+02 0.011 16.2 1.1 27 91-117 3-29 (53)
5 d2o3fa1 a.4.1.20 (A:1-83) Puta 4.0 2.6E+02 0.019 16.6 2.3 30 80-109 46-75 (83)
6 d1nkzb_ f.3.1.1 (B:) Light-har 3.4 3.5E+02 0.025 13.7 3.0 22 99-120 8-29 (41)
7 d1jo5a_ f.3.1.1 (A:) Light-har 3.4 2.6E+02 0.019 15.0 1.5 30 98-127 15-45 (48)
8 d2iuba2 f.17.3.1 (A:286-349) M 3.2 4.3E+02 0.031 14.4 3.3 10 186-195 14-23 (64)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 2.8 9.6E+02 0.07 17.6 16.1 12 86-97 304-315 (447)
10 d1u61a_ a.149.1.1 (A:) Hypothe 2.7 6.9E+02 0.05 15.8 4.5 29 82-110 94-122 (127)
No 1
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=9.53 E-value=3.1e+02 Score=19.69 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHhhhhHHHHHhhh
Q 021881 276 NEEEEEEESKGLLLYGICFRLLDA 299 (306)
Q Consensus 276 ~~~~~a~~~i~~~i~~~~~~~~~~ 299 (306)
|+-..+............+.|...
T Consensus 268 g~it~g~l~~~~~~~~~~~~pl~~ 291 (319)
T d3b60a2 268 DSLTAGTITVVFSSMIALMRPLKS 291 (319)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333443333333333344444433
No 2
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.99 E-value=3e+02 Score=18.46 Aligned_cols=91 Identities=11% Similarity=0.048 Sum_probs=54.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHH-HHHHHHHhhHHHHHHHHHHHH
Q 021881 88 PVCSQAYGSKNWDLLSLSLQRMILILFFAIIPISLLWLNLETVMIFMGQDKDITAMAA-TYTLYALPDLLTNTLLQPLRV 166 (306)
Q Consensus 88 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~-~~l~i~~~~~~~~~~~~~~~~ 166 (306)
+-.++.||-++.++++.++..-..-.=+.-..-.++-.-......+|+..++..-.+- ..+.-.... -..+..++..
T Consensus 46 S~~a~~YaI~sl~EA~AYL~HPvLG~RL~ec~~~ll~~~~~s~~~IfG~~D~lKlrSsmTLF~~a~~~--~~~F~~~L~~ 123 (140)
T d2jeka1 46 SPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDLKLCSSMTLFARATDA--NQDFVALLAK 123 (140)
T ss_dssp SHHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCTTHHHHHHHHHHHHHHHCSC--CHHHHHHHHH
T ss_pred CHHHHHhccCCHHHHHHHHhChHhHHHHHHHHHHHHHccCCCHHHHCCChhHHHHHhHHHHHHHhCCC--chHHHHHHHH
Confidence 3478999999999999999876655544433333344444566677776443322111 111111111 2356778888
Q ss_pred HHHHcCCchHHHHH
Q 021881 167 FLRSQKVTKPMMWC 180 (306)
Q Consensus 167 ~l~~~g~~~~~~~~ 180 (306)
++.|..|.++.-..
T Consensus 124 ~f~G~~d~~Tl~~L 137 (140)
T d2jeka1 124 YYGGGEDRRTVALL 137 (140)
T ss_dssp HSTTCCCHHHHHHH
T ss_pred HhCCCCCHHHHHHH
Confidence 88898888766443
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=7.85 E-value=68 Score=16.99 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 021881 98 NWDLLSLSLQRMILILFFAIIPI-SLLWLN 126 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~ 126 (306)
+.++..+.+.+++.....++++. .+.+..
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~w 39 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVW 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777666 344443
No 4
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.21 E-value=1.6e+02 Score=16.23 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=16.3
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHH
Q 021881 91 SQAYGSKNWDLLSLSLQRMILILFFAI 117 (306)
Q Consensus 91 s~~~g~~~~~~~~~~~~~~~~~~~~~~ 117 (306)
++..|.+..+.++........++..-+
T Consensus 3 ~k~iG~k~~~ia~~wips~~~~G~a~g 29 (53)
T d2fyuk1 3 TRFLGPRYRQLARNWVPTASLWGAVGA 29 (53)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 455676666666666666655554443
No 5
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=4.01 E-value=2.6e+02 Score=16.58 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=24.9
Q ss_pred HHHHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 021881 80 VGLASGLEPVCSQAYGSKNWDLLSLSLQRM 109 (306)
Q Consensus 80 ~gi~~a~~~~~s~~~g~~~~~~~~~~~~~~ 109 (306)
.+.+.+......+.+|-+.+++.|..+++-
T Consensus 46 ~~vS~sTi~Rf~kklG~~gf~e~k~~l~~e 75 (83)
T d2o3fa1 46 ANSSDAAVIRLCKSLGLKGFQDLKMRVAGD 75 (83)
T ss_dssp TTCCHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356778889999999999999999877654
No 6
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=3.44 E-value=3.5e+02 Score=13.71 Aligned_cols=22 Identities=5% Similarity=-0.152 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 021881 99 WDLLSLSLQRMILILFFAIIPI 120 (306)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~i~~ 120 (306)
.|+..+..-.+.+....++++.
T Consensus 8 aEElHk~vIdGtRvF~~iA~~A 29 (41)
T d1nkzb_ 8 SEELHKYVIDGTRVFLGLALVA 29 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHH
Confidence 4677777777777777777666
No 7
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.42 E-value=2.6e+02 Score=14.98 Aligned_cols=30 Identities=7% Similarity=-0.072 Sum_probs=18.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Q 021881 98 NWDLLSLSLQRMILILFFAIIPI-SLLWLNL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 127 (306)
+.++..+.+..++.....++++. .+.+...
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wr 45 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWR 45 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777777777777666 4445443
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.22 E-value=4.3e+02 Score=14.41 Aligned_cols=10 Identities=20% Similarity=0.560 Sum_probs=4.5
Q ss_pred HHHHHhHHHH
Q 021881 186 MFHVPLNYCL 195 (306)
Q Consensus 186 ~~~i~l~~~l 195 (306)
.+-+|++.+-
T Consensus 14 ~iflP~t~i~ 23 (64)
T d2iuba2 14 TIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3344555443
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.79 E-value=9.6e+02 Score=17.62 Aligned_cols=12 Identities=17% Similarity=-0.247 Sum_probs=5.8
Q ss_pred HHHHHHHHhcCC
Q 021881 86 LEPVCSQAYGSK 97 (306)
Q Consensus 86 ~~~~~s~~~g~~ 97 (306)
.....+...+++
T Consensus 304 ~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 304 LCGWMSDKVFRG 315 (447)
T ss_dssp HHHHHHHHTSTT
T ss_pred hhhhhhhhcccc
Confidence 344555555443
No 10
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=2.71 E-value=6.9e+02 Score=15.76 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=19.4
Q ss_pred HHhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 021881 82 LASGLEPVCSQAYGSKNWDLLSLSLQRMI 110 (306)
Q Consensus 82 i~~a~~~~~s~~~g~~~~~~~~~~~~~~~ 110 (306)
.+.+...+++..|=.++.+++++.+.+.+
T Consensus 94 lad~fEAliGalYLd~~~e~~~~~i~~~~ 122 (127)
T d1u61a_ 94 HSTAFEALIGYHHLLNNRERLDEIVYKAI 122 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777665667777777776643
Done!