BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021884
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 131/251 (52%), Gaps = 50/251 (19%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--RAVNEIEG------------- 119
G ++ HG+ ++RV++ EFF L EEK+K+A +A +I+G
Sbjct: 77 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 136
Query: 120 -----------------------------EILNEYAMKLKTVTEVLSKAIAKSLNLEEYS 150
E +EYA L+ + + KA++ L LE
Sbjct: 137 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 196
Query: 151 FLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGK 208
+ G ++ L+Q++ N+YP C +P+L GV+ HTD S +T +L + V GLQ+ +GK
Sbjct: 197 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEGK 255
Query: 209 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI--G 266
W +P ++V+++GD ++I++NG YKS +HR + N EK+RIS A F EP P+++I
Sbjct: 256 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLK 314
Query: 267 PVDQLIDEQRP 277
P+ +++ + P
Sbjct: 315 PLPEMVSVESP 325
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 131/251 (52%), Gaps = 50/251 (19%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--RAVNEIEG------------- 119
G ++ HG+ ++RV++ EFF L EEK+K+A +A +I+G
Sbjct: 78 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 120 -----------------------------EILNEYAMKLKTVTEVLSKAIAKSLNLEEYS 150
E +EYA L+ + + KA++ L LE
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 197
Query: 151 FLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGK 208
+ G ++ L+Q++ N+YP C +P+L GV+ HTD S +T +L + V GLQ+ +GK
Sbjct: 198 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEGK 256
Query: 209 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI--G 266
W +P ++V+++GD ++I++NG YKS +HR + N EK+RIS A F EP P+++I
Sbjct: 257 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLK 315
Query: 267 PVDQLIDEQRP 277
P+ +++ + P
Sbjct: 316 PLPEMVSVESP 326
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 38/267 (14%)
Query: 46 FPVIDMSLFSSQEHVGTXXXXXXXXXXXAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAE 105
FP+I + + E T G F++V HG+ D V + ++ E
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENW-GFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 106 EKQKHARAVNEIEG-----------------------------------EILNEYAMKLK 130
++ K A +EG E+ ++A +L+
Sbjct: 63 QRFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLE 122
Query: 131 TVTEVLSKAIAKSLNLEEYSFLNQF-GDQAL-MQVRFNFYPPCSRPDLVHGVKPHTDRSG 188
+ E L + ++L LE+ N F G + + + YPPC +PDL+ G++ HTD G
Sbjct: 123 KLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGG 182
Query: 189 ITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEK 248
I +L QD +V GLQ+ DG+W VP H++VVNLGDQ++++TNG YKS HRV+ +
Sbjct: 183 IILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDG 242
Query: 249 LRISIAAFTEPEPENEIGPVDQLIDEQ 275
R S+A+F P + I P L++++
Sbjct: 243 ARXSLASFYNPGSDAVIYPAPALVEKE 269
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 48/237 (20%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--RAVNEIEG------------- 119
G ++ HG+ +RV++ EFF L EEK+K+A +A +I+G
Sbjct: 78 GVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 120 -----------------------------EILNEYAMKLKTVTEVLSKAIAKSLNLEEYS 150
E +EYA L+ + + KA++ L LE
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 197
Query: 151 FLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGK 208
+ G ++ L+Q + N+YP C +P+L GV+ HTD S +T +L + V GLQ+ +GK
Sbjct: 198 LEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX-VPGLQLFYEGK 256
Query: 209 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI 265
W +P ++V ++GD ++I++NG YKS +HR + N EK+RIS A F EP P+++I
Sbjct: 257 WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKI 312
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 163 VRFNFYPPCSRPDLVHGVKP--HTDRSGITILLQDREVEGLQIRV-DGKWYRVPVIPHAL 219
+R YPP + + ++ H D + IT+L E GLQ++ DG W VP +
Sbjct: 152 LRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNI 210
Query: 220 VVNLGDQMQIMTNGIYKSPMHRVV----TNTEKLRISIAAFTEPEP 261
++N+GD +Q ++G + S HRV+ T+ K RIS+ F P P
Sbjct: 211 IINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHP 256
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 138 KAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKP--HTDRSGITILLQD 195
+AIA L LE F D + +R YPP P GV+ H D + IT+LL
Sbjct: 147 EAIATYLKLERDFFKPTVQDGNSV-LRLLHYPPI--PKDATGVRAGAHGDINTITLLLGA 203
Query: 196 REVEGLQI-RVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIA 254
E GL++ DG+W + P LV+N+GD ++ +TN + S +HRVV N R +
Sbjct: 204 EE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPERRGVP 261
Query: 255 AFTEP 259
++ P
Sbjct: 262 RYSTP 266
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 120 EILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFG-DQALMQV---RFNF---YPPCS 172
+ +Y + ++ L K A +L EE F F D L V R+ + YP +
Sbjct: 140 DFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAA 199
Query: 173 RPDLVHGVK----PHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQ 228
G K H D S IT+L Q V+ LQ+ + + ++N G M
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEADDTGYLINCGSYMA 258
Query: 229 IMTNGIYKSPMHRV-VTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYG 287
+TN YK+P+HRV N E R S+ F ++ I P D E K R +YG
Sbjct: 259 HLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDPFDPR--EPNGKSDREPLSYG 314
Query: 288 AINYECYQKGLVAL 301
+ Q GLV+L
Sbjct: 315 ----DYLQNGLVSL 324
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 120 EILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFG-DQALMQV---RFNF---YPPCS 172
+ +Y + ++ L K A +L EE F F D L V R+ + YP +
Sbjct: 140 DFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAA 199
Query: 173 RPDLVHGVK----PHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQ 228
G K H D S IT+L Q V+ LQ+ + + ++N G M
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEADDTGYLINCGSYMA 258
Query: 229 IMTNGIYKSPMHRV-VTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYG 287
+TN YK+P+HRV N E R S+ F ++ I P D E K R +YG
Sbjct: 259 HLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDPFDPR--EPNGKSDREPLSYG 314
Query: 288 AINYECYQKGLVAL 301
+ Q GLV+L
Sbjct: 315 ----DYLQNGLVSL 324
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 50/218 (22%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGE------ 120
G F + G++D+ L +++ ++FF+ +E +++ R +E E
Sbjct: 30 GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 89
Query: 121 ----------------------------ILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFL 152
I +Y + T + +++ + ++ E +
Sbjct: 90 NTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGV 149
Query: 153 NQFGDQALMQVRFNFYPPC----SRPDLVHGVKPHTDRSGITILLQDREVEG---LQIRV 205
F D + +RF ++P S + + PH D S +T++ Q G LQ V
Sbjct: 150 EAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV 208
Query: 206 DGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 243
G + +P P A++V G ++T G K+P H V
Sbjct: 209 GGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 246
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 50/218 (22%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGE------ 120
G F + G++D+ L +++ ++FF+ +E +++ R +E E
Sbjct: 30 GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 89
Query: 121 ----------------------------ILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFL 152
I +Y + T + +++ + ++ E +
Sbjct: 90 NTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGV 149
Query: 153 NQFGDQALMQVRFNFYP--PCSRPDLVHGVK--PHTDRSGITILLQDREVEG---LQIRV 205
F D + +RF ++P P R ++ PH D S +T++ Q G LQ V
Sbjct: 150 EAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV 208
Query: 206 DGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 243
G + +P P A++V G ++T G K+P H V
Sbjct: 209 GGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 246
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 50/218 (22%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGE------ 120
G F + G++D+ L +++ ++FF+ +E +++ R +E E
Sbjct: 30 GLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 89
Query: 121 ----------------------------ILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFL 152
I +Y + T + +++ + ++ E +
Sbjct: 90 NTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGV 149
Query: 153 NQFGDQALMQVRFNFYPPC----SRPDLVHGVKPHTDRSGITILLQDREVEG---LQIRV 205
F D + +RF ++P S + + PH D S +T++ Q G LQ V
Sbjct: 150 EAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV 208
Query: 206 DGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 243
G + +P P A++V G ++T G K+P H V
Sbjct: 209 GGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 246
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 50/218 (22%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGE------ 120
G F + G++D+ L +++ ++FF+ +E +++ R +E E
Sbjct: 50 GLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 109
Query: 121 ----------------------------ILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFL 152
I +Y + T + +++ + ++ E +
Sbjct: 110 NTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGV 169
Query: 153 NQFGDQALMQVRFNFYP--PCSRPDLVHGVK--PHTDRSGITILLQDREVEG---LQIRV 205
F D + +RF ++P P R ++ PH D S +T++ Q G LQ V
Sbjct: 170 EAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV 228
Query: 206 DGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 243
G + +P P A++V G ++T G K+P H V
Sbjct: 229 GGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 266
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 50/218 (22%)
Query: 75 GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--------RAVNEIEGE------ 120
G F + G++D+ L +++ ++FF+ +E +++ R +E E
Sbjct: 30 GLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQIT 89
Query: 121 ----------------------------ILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFL 152
I +Y + T + +++ + ++ E +
Sbjct: 90 NTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGV 149
Query: 153 NQFGDQALMQVRFNFYP--PCSRPDLVHGVK--PHTDRSGITILLQDREVEG---LQIRV 205
F D + +RF ++P P R ++ PH D S +T++ Q G LQ V
Sbjct: 150 EAFLDCEPL-LRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV 208
Query: 206 DGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 243
G + +P P A++V G ++T G K+P H V
Sbjct: 209 GGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVA 246
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 88 FLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLKTVTEVLSKAIAKSLNLE 147
F+D +R + V+ ++ Q++ R VN + E LNE +K+ + + LS ++ KSL E
Sbjct: 1848 FIDGLRAL-VKLVTAKYQDLQENQRFVN-VGLEKLNESVLKVNELNKTLSISLVKSLTFE 1905
Query: 148 EYSFLN 153
+ +LN
Sbjct: 1906 KERWLN 1911
>pdb|2X1X|E Chain E, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|A Chain A, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|B Chain B, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|C Chain C, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|D Chain D, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 110
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 205 VDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRV-----VTNTEKLRI 251
+D +W + +P + +++G + + TN +K P V N+E L+
Sbjct: 11 IDNEWRKTQCMPREVAIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQC 62
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 80 VGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGEILNEYAMKLK 130
VG G D+ + + + E Q+P E+K + V +I I NEY+ KL+
Sbjct: 308 VGFGXGDAVISLL--LKRENVQIPREKKSVYICRVGKINSSIXNEYSRKLR 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,227,832
Number of Sequences: 62578
Number of extensions: 314886
Number of successful extensions: 752
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 28
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)