Query 021885
Match_columns 306
No_of_seqs 162 out of 1567
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0677 Actin-related protein 100.0 7.2E-72 1.6E-76 471.1 18.0 296 1-296 1-296 (389)
2 PTZ00452 actin; Provisional 100.0 3.2E-67 7E-72 488.2 26.4 296 3-304 4-299 (375)
3 PTZ00466 actin-like protein; P 100.0 3.5E-66 7.5E-71 481.8 26.1 294 3-304 11-304 (380)
4 KOG0676 Actin and related prot 100.0 3E-67 6.6E-72 475.7 18.2 291 3-304 6-296 (372)
5 PTZ00281 actin; Provisional 100.0 6.4E-66 1.4E-70 480.4 24.5 297 2-304 4-300 (376)
6 PTZ00004 actin-2; Provisional 100.0 1.4E-63 2.9E-68 465.3 25.5 297 2-304 4-302 (378)
7 PTZ00280 Actin-related protein 100.0 1.3E-59 2.8E-64 443.6 25.8 300 1-304 1-318 (414)
8 KOG0679 Actin-related protein 100.0 3.5E-59 7.6E-64 412.9 19.8 290 2-297 9-344 (426)
9 PF00022 Actin: Actin; InterP 100.0 7.9E-58 1.7E-62 429.5 21.5 291 2-304 2-316 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 3.1E-56 6.8E-61 415.9 24.7 293 5-304 2-297 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 3E-55 6.5E-60 409.0 24.8 293 6-304 1-295 (371)
12 COG5277 Actin and related prot 100.0 3.1E-51 6.7E-56 383.7 21.6 293 3-297 5-365 (444)
13 KOG0680 Actin-related protein 100.0 1.3E-49 2.8E-54 344.7 16.8 286 3-304 2-323 (400)
14 KOG0678 Actin-related protein 100.0 3.8E-45 8.2E-50 317.4 14.1 299 1-304 1-320 (415)
15 KOG0681 Actin-related protein 100.0 5.6E-38 1.2E-42 288.1 16.5 221 3-230 22-249 (645)
16 PRK13930 rod shape-determining 100.0 4.5E-30 9.8E-35 236.4 15.2 260 6-294 10-279 (335)
17 PRK13927 rod shape-determining 100.0 1E-29 2.2E-34 233.9 14.4 260 5-294 6-275 (334)
18 KOG0797 Actin-related protein 100.0 1.4E-27 3E-32 218.5 17.7 202 65-272 178-400 (618)
19 TIGR00904 mreB cell shape dete 99.9 2E-26 4.4E-31 211.9 16.8 263 6-293 4-277 (333)
20 PRK13929 rod-share determining 99.9 5.1E-26 1.1E-30 209.2 18.2 258 3-293 3-276 (335)
21 PRK13928 rod shape-determining 99.9 1.4E-21 3.1E-26 179.9 15.5 258 5-292 4-272 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 6E-20 1.3E-24 166.5 17.2 203 5-223 2-214 (326)
23 COG1077 MreB Actin-like ATPase 99.7 4.8E-15 1E-19 130.8 18.1 206 4-223 6-222 (342)
24 TIGR02529 EutJ ethanolamine ut 99.2 3.6E-10 7.9E-15 99.1 15.2 136 69-218 28-166 (239)
25 PRK15080 ethanolamine utilizat 99.1 5.7E-09 1.2E-13 93.1 16.4 165 5-217 25-192 (267)
26 PLN03184 chloroplast Hsp70; Pr 98.7 4E-07 8.6E-12 91.3 16.9 116 78-196 148-274 (673)
27 CHL00094 dnaK heat shock prote 98.7 4E-07 8.6E-12 90.7 15.7 114 80-196 113-237 (621)
28 TIGR01991 HscA Fe-S protein as 98.7 9.3E-07 2E-11 87.6 17.4 114 81-197 108-232 (599)
29 PRK01433 hscA chaperone protei 98.7 1.4E-06 2.9E-11 86.2 17.7 116 102-219 142-266 (595)
30 PTZ00400 DnaK-type molecular c 98.6 8.7E-07 1.9E-11 88.8 14.7 95 101-196 174-276 (663)
31 PRK05183 hscA chaperone protei 98.6 2.4E-06 5.1E-11 85.0 17.0 114 81-197 128-252 (616)
32 PRK13410 molecular chaperone D 98.6 1.1E-06 2.4E-11 88.0 14.6 94 102-196 136-237 (668)
33 PTZ00009 heat shock 70 kDa pro 98.6 1.1E-06 2.4E-11 87.9 14.3 94 102-196 141-244 (653)
34 PRK13411 molecular chaperone D 98.6 9.2E-07 2E-11 88.5 13.4 94 102-196 134-236 (653)
35 TIGR02350 prok_dnaK chaperone 98.6 1.7E-06 3.6E-11 85.9 15.0 94 102-196 131-233 (595)
36 PRK00290 dnaK molecular chaper 98.5 2E-06 4.4E-11 85.8 15.4 94 102-196 134-235 (627)
37 PTZ00186 heat shock 70 kDa pre 98.4 5.6E-06 1.2E-10 82.7 15.5 94 102-196 161-262 (657)
38 PRK11678 putative chaperone; P 98.3 7.1E-06 1.5E-10 78.4 12.3 182 6-191 2-260 (450)
39 TIGR03739 PRTRC_D PRTRC system 98.3 6.8E-06 1.5E-10 75.3 10.8 185 9-197 2-215 (320)
40 COG0443 DnaK Molecular chapero 98.2 5.4E-05 1.2E-09 74.7 16.6 179 4-196 5-222 (579)
41 PF00012 HSP70: Hsp70 protein; 98.2 1.2E-05 2.5E-10 80.0 11.4 94 102-196 136-238 (602)
42 COG0849 ftsA Cell division ATP 98.0 0.00018 3.9E-09 67.7 14.8 90 122-222 171-265 (418)
43 PRK09472 ftsA cell division pr 98.0 0.00038 8.2E-09 66.2 16.9 94 114-219 165-263 (420)
44 PRK13917 plasmid segregation p 98.0 0.00022 4.8E-09 66.0 14.6 189 5-198 3-234 (344)
45 TIGR01174 ftsA cell division p 97.6 0.00037 8.1E-09 65.2 9.8 96 114-221 157-257 (371)
46 PRK10719 eutA reactivating fac 97.5 0.00098 2.1E-08 63.1 11.0 132 68-202 53-208 (475)
47 TIGR01175 pilM type IV pilus a 97.4 0.012 2.5E-07 54.5 16.8 124 80-218 93-246 (348)
48 PF06406 StbA: StbA protein; 97.0 0.0032 6.9E-08 57.7 8.7 112 86-198 81-214 (318)
49 KOG0104 Molecular chaperones G 97.0 0.0094 2E-07 58.9 11.4 94 102-196 159-275 (902)
50 PF06277 EutA: Ethanolamine ut 96.7 0.049 1.1E-06 51.8 14.0 131 68-202 50-205 (473)
51 PF11104 PilM_2: Type IV pilus 96.6 0.038 8.2E-07 51.1 12.5 110 79-194 86-223 (340)
52 COG4972 PilM Tfp pilus assembl 96.6 0.22 4.7E-06 45.2 16.3 43 151-195 195-237 (354)
53 KOG0681 Actin-related protein 96.5 0.00066 1.4E-08 64.4 0.2 45 248-292 512-556 (645)
54 COG4820 EutJ Ethanolamine util 96.1 0.0033 7.1E-08 52.8 2.2 131 71-216 62-196 (277)
55 KOG0103 Molecular chaperones H 95.8 0.15 3.3E-06 50.3 11.9 97 100-197 136-247 (727)
56 TIGR03706 exo_poly_only exopol 94.6 0.23 5.1E-06 45.0 9.1 86 101-190 72-164 (300)
57 PRK11031 guanosine pentaphosph 94.4 0.14 3.1E-06 49.8 7.7 74 113-189 89-170 (496)
58 PRK10854 exopolyphosphatase; P 93.7 0.15 3.2E-06 49.9 6.3 74 113-189 94-175 (513)
59 TIGR03123 one_C_unchar_1 proba 92.9 1.1 2.4E-05 40.9 10.2 31 144-174 123-153 (318)
60 COG0248 GppA Exopolyphosphatas 91.8 0.37 8E-06 46.7 6.0 72 116-190 89-168 (492)
61 PF01968 Hydantoinase_A: Hydan 89.5 0.42 9E-06 43.2 3.9 33 140-172 67-100 (290)
62 PF08841 DDR: Diol dehydratase 89.2 1.4 3E-05 39.3 6.7 91 115-216 95-191 (332)
63 KOG0101 Molecular chaperones H 88.4 2.3 4.9E-05 42.2 8.2 94 101-195 143-246 (620)
64 COG4819 EutA Ethanolamine util 87.7 6.4 0.00014 36.0 9.9 151 68-222 52-238 (473)
65 PF14450 FtsA: Cell division p 87.4 2.8 6.2E-05 32.3 6.9 59 152-221 2-71 (120)
66 COG1521 Pantothenate kinase ty 87.0 3.4 7.4E-05 36.4 7.8 17 7-23 3-19 (251)
67 KOG0100 Molecular chaperones G 87.0 4.9 0.00011 37.7 9.0 112 102-216 173-298 (663)
68 PF02541 Ppx-GppA: Ppx/GppA ph 86.5 1 2.2E-05 40.4 4.4 73 114-190 70-151 (285)
69 PRK13321 pantothenate kinase; 82.9 7.6 0.00016 34.3 8.3 19 6-24 2-20 (256)
70 TIGR00241 CoA_E_activ CoA-subs 81.1 25 0.00054 30.7 10.9 45 150-194 92-137 (248)
71 COG1548 Predicted transcriptio 77.4 1.7 3.7E-05 38.2 2.2 23 148-170 129-151 (330)
72 TIGR03286 methan_mark_15 putat 77.2 22 0.00048 33.6 9.6 82 81-172 179-264 (404)
73 PF03309 Pan_kinase: Type III 76.8 8.7 0.00019 32.6 6.5 18 7-24 2-19 (206)
74 PRK13318 pantothenate kinase; 76.2 11 0.00025 33.1 7.3 18 6-23 2-19 (258)
75 PRK13324 pantothenate kinase; 75.7 36 0.00078 30.2 10.2 18 6-23 2-19 (258)
76 cd08627 PI-PLCc_gamma1 Catalyt 69.3 8.8 0.00019 33.3 4.6 44 81-130 74-117 (229)
77 COG1924 Activator of 2-hydroxy 68.4 78 0.0017 29.7 10.7 81 84-173 173-253 (396)
78 cd08630 PI-PLCc_delta3 Catalyt 67.2 10 0.00022 33.6 4.6 45 80-130 73-117 (258)
79 cd08626 PI-PLCc_beta4 Catalyti 67.1 9.8 0.00021 33.6 4.6 44 81-130 76-119 (257)
80 cd08596 PI-PLCc_epsilon Cataly 66.6 10 0.00022 33.4 4.6 44 81-130 74-117 (254)
81 cd08632 PI-PLCc_eta1 Catalytic 66.3 11 0.00023 33.2 4.6 44 81-130 74-117 (253)
82 cd08629 PI-PLCc_delta1 Catalyt 66.1 11 0.00023 33.4 4.6 44 81-130 74-117 (258)
83 cd08595 PI-PLCc_zeta Catalytic 65.8 11 0.00023 33.4 4.6 45 80-130 73-117 (257)
84 TIGR00671 baf pantothenate kin 65.8 72 0.0016 27.9 9.8 18 7-24 2-19 (243)
85 KOG0102 Molecular chaperones m 65.6 53 0.0011 32.3 9.3 114 102-216 161-285 (640)
86 cd08594 PI-PLCc_eta Catalytic 65.5 11 0.00025 32.5 4.6 45 80-130 73-117 (227)
87 cd08631 PI-PLCc_delta4 Catalyt 65.4 11 0.00024 33.3 4.5 44 81-130 74-117 (258)
88 cd08593 PI-PLCc_delta Catalyti 65.0 11 0.00024 33.3 4.5 45 80-130 73-117 (257)
89 cd08633 PI-PLCc_eta2 Catalytic 64.7 12 0.00026 33.0 4.6 44 81-130 74-117 (254)
90 cd08592 PI-PLCc_gamma Catalyti 64.0 12 0.00027 32.4 4.5 44 81-130 74-117 (229)
91 cd08591 PI-PLCc_beta Catalytic 63.9 12 0.00027 33.0 4.5 44 81-130 76-119 (257)
92 cd08598 PI-PLC1c_yeast Catalyt 63.6 13 0.00027 32.4 4.5 45 80-130 73-117 (231)
93 cd08558 PI-PLCc_eukaryota Cata 61.2 15 0.00032 31.9 4.5 45 80-130 73-117 (226)
94 cd08597 PI-PLCc_PRIP_metazoa C 59.6 15 0.00033 32.5 4.4 44 81-130 74-117 (260)
95 PF08735 DUF1786: Putative pyr 57.5 91 0.002 27.6 8.8 59 134-194 145-213 (254)
96 cd08623 PI-PLCc_beta1 Catalyti 57.3 19 0.00041 31.9 4.5 44 81-130 76-120 (258)
97 cd08628 PI-PLCc_gamma2 Catalyt 57.3 19 0.00041 31.8 4.5 44 81-130 74-117 (254)
98 cd08624 PI-PLCc_beta2 Catalyti 56.8 19 0.00041 31.9 4.5 44 81-130 76-120 (261)
99 KOG0169 Phosphoinositide-speci 56.1 13 0.00028 37.6 3.7 44 81-130 361-404 (746)
100 cd08625 PI-PLCc_beta3 Catalyti 53.5 21 0.00046 31.6 4.3 44 81-130 76-120 (258)
101 COG4012 Uncharacterized protei 52.0 1.5E+02 0.0032 26.5 9.1 44 149-195 227-274 (342)
102 TIGR02707 butyr_kinase butyrat 51.7 2E+02 0.0042 26.8 10.6 25 150-175 175-199 (351)
103 COG0145 HyuA N-methylhydantoin 51.5 16 0.00034 37.1 3.6 31 142-172 269-301 (674)
104 PRK13326 pantothenate kinase; 49.5 1.5E+02 0.0032 26.4 9.0 20 5-24 7-26 (262)
105 cd08599 PI-PLCc_plant Catalyti 48.7 34 0.00073 29.7 4.7 47 81-134 74-120 (228)
106 TIGR03192 benz_CoA_bzdQ benzoy 48.2 2.1E+02 0.0046 25.9 10.1 136 6-193 34-172 (293)
107 TIGR03367 queuosine_QueD queuo 47.0 30 0.00064 25.3 3.6 50 73-129 42-91 (92)
108 PRK13320 pantothenate kinase; 45.4 2.1E+02 0.0045 25.0 10.7 18 6-23 4-21 (244)
109 KOG1794 N-Acetylglucosamine ki 44.6 1.7E+02 0.0038 26.5 8.5 90 81-171 47-142 (336)
110 smart00842 FtsA Cell division 44.4 69 0.0015 26.5 5.9 22 71-92 36-57 (187)
111 PLN02230 phosphoinositide phos 43.8 36 0.00077 34.0 4.6 44 81-130 187-230 (598)
112 PLN02952 phosphoinositide phos 43.8 36 0.00079 34.0 4.6 44 81-130 196-239 (599)
113 PLN02222 phosphoinositide phos 43.0 35 0.00076 34.0 4.4 44 81-130 176-219 (581)
114 PLN02228 Phosphoinositide phos 41.5 41 0.00088 33.4 4.6 44 81-130 179-222 (567)
115 PF07318 DUF1464: Protein of u 39.9 47 0.001 30.7 4.4 50 146-195 151-204 (343)
116 PLN02223 phosphoinositide phos 39.3 46 0.001 32.7 4.5 46 80-130 178-223 (537)
117 TIGR02261 benz_CoA_red_D benzo 33.1 3.5E+02 0.0076 24.0 10.3 139 6-193 3-144 (262)
118 KOG1265 Phospholipase C [Lipid 31.0 71 0.0015 33.3 4.4 43 81-129 388-430 (1189)
119 smart00732 YqgFc Likely ribonu 30.3 1.8E+02 0.0039 20.8 5.6 47 151-197 3-50 (99)
120 TIGR00744 ROK_glcA_fam ROK fam 30.3 1.4E+02 0.003 26.8 6.0 52 120-173 89-147 (318)
121 PRK13333 pantothenate kinase; 28.5 72 0.0016 27.3 3.5 28 139-169 76-103 (206)
122 TIGR01174 ftsA cell division p 25.3 1.8E+02 0.0039 27.0 5.9 22 71-92 37-58 (371)
123 TIGR00039 6PTHBS 6-pyruvoyl te 23.6 1.2E+02 0.0026 23.4 3.8 52 73-129 44-95 (124)
124 PRK00976 hypothetical protein; 22.8 1.3E+02 0.0028 27.7 4.3 31 142-173 142-172 (326)
No 1
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=7.2e-72 Score=471.10 Aligned_cols=296 Identities=62% Similarity=1.077 Sum_probs=289.0
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeech
Q 021885 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNW 80 (306)
Q Consensus 1 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~ 80 (306)
||++++||.|+|+...|+||||++.|.++|||.+|+|..+...+.+....+++.+|+++.+.|+.+.+.||+++|.+.||
T Consensus 1 Md~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnw 80 (389)
T KOG0677|consen 1 MDSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNW 80 (389)
T ss_pred CCCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccCh
Confidence 88999999999999999999999999999999999998888888777788999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCc
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGV 160 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~ 160 (306)
|+++++|+|.|.++|++++.+..++++|||++|.+.|++|+|.+||+|++.++|+.-|+++++||.|..||+|||+|.+.
T Consensus 81 ddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGV 160 (389)
T KOG0677|consen 81 DDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGV 160 (389)
T ss_pred HHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccCCcccce
Q 021885 161 THVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240 (306)
Q Consensus 161 t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~~~~~~~ 240 (306)
|+|+||++|++++|-.++++++|+++|+||.++|.++|+.++...+.+.++++||++||++.|++.+.+.+.+.+....+
T Consensus 161 THi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~ 240 (389)
T KOG0677|consen 161 THIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVES 240 (389)
T ss_pred eEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EECCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhhhh
Q 021885 241 YTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIIS 296 (306)
Q Consensus 241 y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (306)
|.||||.+|++|.|||.+||.||+|.+++.+++|+.++.++.|+..+||.|.++|.
T Consensus 241 YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYk 296 (389)
T KOG0677|consen 241 YTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYK 296 (389)
T ss_pred eecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHh
Confidence 99999999999999999999999999999999999999999999999999997775
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=3.2e-67 Score=488.21 Aligned_cols=296 Identities=36% Similarity=0.650 Sum_probs=269.7
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechhh
Q 021885 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (306)
Q Consensus 3 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d~ 82 (306)
..++||||+||+++|+||||++.|++++||++|+++...... ....+++++|+++...++.+++++|+++|+|.|||.
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~--~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~ 81 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIF--STFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDD 81 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccc--cccccceEEChhhhccccCcEEcccCcCCEEcCHHH
Confidence 457999999999999999999999999999999886542110 112457889999988888899999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCceE
Q 021885 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (306)
Q Consensus 83 l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~ 162 (306)
++.+|+|+|.+.|+++++++|++++|++++++..|++++|+|||+|++|++++.++++|++||+|++||+|||+|++.|+
T Consensus 82 ~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~ 161 (375)
T PTZ00452 82 IEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTH 161 (375)
T ss_pred HHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcce
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccCCcccceEE
Q 021885 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (306)
Q Consensus 163 v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~~~~~~~y~ 242 (306)
|+||+||++++++++++++||+++|++|.++|+.+++.+....+.++++++||++|||+.|+..+.+.....+...+.|+
T Consensus 162 v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~ 241 (375)
T PTZ00452 162 CVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK 241 (375)
T ss_pred EEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE
Confidence 99999999999999999999999999999999999887766667889999999999999999877654444444567899
Q ss_pred CCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhhhhcCCCccee
Q 021885 243 LPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVL 304 (306)
Q Consensus 243 lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
||||+.|.+++|||.+||+||+|+++|.+..|+++++..+|.+|++|.|+ .|.+|+||
T Consensus 242 LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~----~L~~nIvL 299 (375)
T PTZ00452 242 LPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQ----ELCRNIVL 299 (375)
T ss_pred CCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHH----HhhccEEE
Confidence 99999999999999999999999999999999999999999999999888 66667666
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=3.5e-66 Score=481.78 Aligned_cols=294 Identities=42% Similarity=0.755 Sum_probs=267.4
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechhh
Q 021885 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (306)
Q Consensus 3 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d~ 82 (306)
+.++||||+||+++|+||||++.|+.++||++|+++.+.... +...++.++|+++...++.+++++|+++|+|.|||.
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~--~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~ 88 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMA--GAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWND 88 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccc--cCCCCCeEECchhhhhCcCceeCccccCCeECCHHH
Confidence 467899999999999999999999999999999987643221 122347889999988888889999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCceE
Q 021885 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (306)
Q Consensus 83 l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~ 162 (306)
++.+|+|+| +.|+++++++|++++|++++++..|++++|+|||+|++|++++..+++||+||+|++||+|||+|++.|+
T Consensus 89 ~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~ 167 (380)
T PTZ00466 89 MENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCH 167 (380)
T ss_pred HHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceE
Confidence 999999999 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccCCcccceEE
Q 021885 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (306)
Q Consensus 163 v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~~~~~~~y~ 242 (306)
|+||+||+++.+++.++++||++++++|+++|++++..++...+.++++++||++|||+.|+..+.+.. ......+.|+
T Consensus 168 v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~-~~~~~~~~y~ 246 (380)
T PTZ00466 168 CVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSS-EKALTTLPYI 246 (380)
T ss_pred EEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhc-cccccceeEE
Confidence 999999999999999999999999999999999998877777788999999999999999988765432 2233457899
Q ss_pred CCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhhhhcCCCccee
Q 021885 243 LPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVL 304 (306)
Q Consensus 243 lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
||||+.|.++.|||.+||+||+|+++|.+..|+++++.++|.+|++|.|+ .|..|+||
T Consensus 247 LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~----~L~~nIvL 304 (380)
T PTZ00466 247 LPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRR----TLYSHIVL 304 (380)
T ss_pred CCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHH----HHhhcEEE
Confidence 99999999999999999999999999999999999999999999999888 55566665
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3e-67 Score=475.67 Aligned_cols=291 Identities=46% Similarity=0.858 Sum_probs=268.6
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechhh
Q 021885 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (306)
Q Consensus 3 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d~ 82 (306)
..++||+|+||..+|+|||||+.|+.++||.++++++..... +...++.++|+++...+ .+.||+++|+|+|||+
T Consensus 6 ~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~--~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 6 DIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMA--GMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred CcceEEEECCCceeecccCCCCCCceecceeccccccccccc--cccccccccchhhhccc---cccCccccccccchHH
Confidence 458999999999999999999999999999999877654432 44567889999998888 7899999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCceE
Q 021885 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (306)
Q Consensus 83 l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~ 162 (306)
++.+|.|+|.+.|++.|++||++++|++++++..||+++|+|||.|++|++|+..++++ |++|++||+|||+|++.|+
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999887777 9999999999999999999
Q ss_pred EEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccCCcccceEE
Q 021885 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (306)
Q Consensus 163 v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~~~~~~~y~ 242 (306)
++||++|+++++++.++++||++++++|+..|.++++.+....++++++++||++|||+.|++++.+...........|+
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999999988988889999999999999999999988776334455667799
Q ss_pred CCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhhhhcCCCccee
Q 021885 243 LPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVL 304 (306)
Q Consensus 243 lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
||||+.|.+++|||.+||+||+|+++|++..|+++.++++|.||++|-|++ |..|+||
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~----L~~nivL 296 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKD----LYENIVL 296 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHH----HHhheEE
Confidence 999999999999999999999999999999999999999999999999985 5556665
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=6.4e-66 Score=480.40 Aligned_cols=297 Identities=44% Similarity=0.817 Sum_probs=269.8
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechh
Q 021885 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWE 81 (306)
Q Consensus 2 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d 81 (306)
|+.++||||+||+++|+|||||+.|+.++||++++++...... +...++.++|+++...+..+.+++|+++|+|.|||
T Consensus 4 ~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd 81 (376)
T PTZ00281 4 EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMV--GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD 81 (376)
T ss_pred CcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCccccc--CcccCCeEECchhhccccCcEEeccCcCCEEcCHH
Confidence 3567999999999999999999999999999999876543211 12345788999988778889999999999999999
Q ss_pred hHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCce
Q 021885 82 DMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (306)
Q Consensus 82 ~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t 161 (306)
.++.+|+|+|.+.|+++++++|++++|++++++..|++++|+|||+|++|+++++++++|++|++|++||+|||+|++.|
T Consensus 82 ~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t 161 (376)
T PTZ00281 82 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVS 161 (376)
T ss_pred HHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccCCcccceE
Q 021885 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNY 241 (306)
Q Consensus 162 ~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~~~~~~~y 241 (306)
+|+||+||+++.++++++++||++++++|+++|..+++.+....+.++++++||++|||+.|+..+.+.........+.|
T Consensus 162 ~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y 241 (376)
T PTZ00281 162 HTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 241 (376)
T ss_pred EEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeE
Confidence 99999999999999999999999999999999999988877667889999999999999999887766544444556789
Q ss_pred ECCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhhhhcCCCccee
Q 021885 242 TLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVL 304 (306)
Q Consensus 242 ~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
.||||+.|.+++|||.+||+||+|+++|.+..|+++++.++|.+|++|-|++ |.+|+||
T Consensus 242 ~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~----L~~nIvl 300 (376)
T PTZ00281 242 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYGNVVL 300 (376)
T ss_pred ECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHH----HHhhccc
Confidence 9999999999999999999999999999999999999999999999998885 4555554
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.4e-63 Score=465.30 Aligned_cols=297 Identities=45% Similarity=0.801 Sum_probs=267.7
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechh
Q 021885 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWE 81 (306)
Q Consensus 2 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d 81 (306)
++.++||||+||+++|+||||++.|++++||++++++.+.... +...+..++|+++...++...+++|+++|+|.|||
T Consensus 4 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d 81 (378)
T PTZ00004 4 EETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMV--GMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWD 81 (378)
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEeccccccc--CcCCCceEECchhhcccccceEcccCcCCEEcCHH
Confidence 4678999999999999999999999999999999876543221 12345788999987777778899999999999999
Q ss_pred hHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCce
Q 021885 82 DMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (306)
Q Consensus 82 ~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t 161 (306)
.++.+|+|+|.++|++++.++|+++++++++++..|++++|+|||+|++|++++.+++++|+|++|++||+|||+|++.|
T Consensus 82 ~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t 161 (378)
T PTZ00004 82 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 161 (378)
T ss_pred HHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccC-Ccccce
Q 021885 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET-TILVKN 240 (306)
Q Consensus 162 ~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~-~~~~~~ 240 (306)
+|+||+||+++.++++++++||++++++|+++|+.+++.+....+.++++++||++|||+.|+.++.+..... +...+.
T Consensus 162 ~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~ 241 (378)
T PTZ00004 162 HTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEES 241 (378)
T ss_pred EEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceE
Confidence 9999999999999999999999999999999999998877666678899999999999999998776543222 223678
Q ss_pred EECCCccEEEECCccccccccCCCCCCCCCC-CcccchhhhhcccccCCCchhhhhhcCCCccee
Q 021885 241 YTLPDGRVIKVGTERFQAPEALFTPVSLYFF-SVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVL 304 (306)
Q Consensus 241 y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
|+||||+.|.++.|||.+||+||+|+++|.+ ..|+++++..+|.+|++|-|. .|..|+||
T Consensus 242 y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~----~L~~nIvl 302 (378)
T PTZ00004 242 YELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRK----DLYGNIVL 302 (378)
T ss_pred EECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHH----HHHhhEEe
Confidence 9999999999999999999999999999999 999999999999999999888 55556665
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.3e-59 Score=443.56 Aligned_cols=300 Identities=36% Similarity=0.617 Sum_probs=263.0
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhh-hhcccCCceEeccccccccCCceeeceeecCeeec
Q 021885 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEES-LMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQN 79 (306)
Q Consensus 1 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~ 79 (306)
|+..++||||+||+++|+||||++.|++++||++++++.+.... .......++++|+++...+..+.+++|+++|+|.|
T Consensus 1 ~~~~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~d 80 (414)
T PTZ00280 1 ASTLPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVED 80 (414)
T ss_pred CCCCCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCC
Confidence 56678999999999999999999999999999999876532100 00111236789999988888899999999999999
Q ss_pred hhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhc----------CCC
Q 021885 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ----------GLL 149 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~----------g~~ 149 (306)
||.++.+|+|+|.+.|++++.++|+++++|+++++..|++++|+|||+|++|++++..+++||+||+ |++
T Consensus 81 wd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 81 WDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 9999999999998899999999999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHh
Q 021885 150 TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQ 229 (306)
Q Consensus 150 tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~ 229 (306)
||+|||+|++.|+|+||++|+++.++++++++||++++++|.++|++++..+....+.++++++||++||++.|+.++.+
T Consensus 161 tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~ 240 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFE 240 (414)
T ss_pred eEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999887776555688999999999999999887765
Q ss_pred hccc-CCcccceEECCC---cc--EEEECCccccccccCCCCCCCCCC-CcccchhhhhcccccCCCchhhhhhcCCCcc
Q 021885 230 LGLE-TTILVKNYTLPD---GR--VIKVGTERFQAPEALFTPVSLYFF-SVVFYPLKLTHAIHCSCSTEHAIISTLPDHF 302 (306)
Q Consensus 230 ~~~~-~~~~~~~y~lPd---g~--~i~l~~er~~~~E~lF~P~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (306)
.... .......|.+|| |+ .|.++.|||.+||+||+|+++|.+ ..|+++++..+|.+|++|-|+ .|.+|+
T Consensus 241 ~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~----~L~~nI 316 (414)
T PTZ00280 241 KYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRR----PLYKNI 316 (414)
T ss_pred HhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHH----HHhhcE
Confidence 4321 122456799988 33 799999999999999999998766 459999999999999999888 555666
Q ss_pred ee
Q 021885 303 VL 304 (306)
Q Consensus 303 ~~ 304 (306)
||
T Consensus 317 vL 318 (414)
T PTZ00280 317 VL 318 (414)
T ss_pred EE
Confidence 65
No 8
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=3.5e-59 Score=412.89 Aligned_cols=290 Identities=29% Similarity=0.501 Sum_probs=248.9
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEecccccc-ccCCceeeceeecCeeech
Q 021885 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALD-LRHQLDVSYPVNNGIVQNW 80 (306)
Q Consensus 2 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~p~~~g~i~~~ 80 (306)
|+.++||||+||+++||||||++.|+.++||++|.....+.. ....+.++++.++.. .|..+++..|+++|++.||
T Consensus 9 dEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d---~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dW 85 (426)
T KOG0679|consen 9 DEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGD---AEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDW 85 (426)
T ss_pred cccceEEEeCCCceEeccccCCCCccccccceeeeeecccCc---cccccceEeechhccCCCCCCeeccchhcCCcccH
Confidence 578999999999999999999999999999999964222111 122345789988765 6889999999999999999
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCc
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGV 160 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~ 160 (306)
|.++.+|+|+|+++|+++|.+||+|++||+++++..|++++|++||+|+||++|++.+++|++||+|+.||+|||||++.
T Consensus 86 D~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~ 165 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATH 165 (426)
T ss_pred HHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccc---------------------------------cCChH
Q 021885 161 THVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMN---------------------------------RTADF 207 (306)
Q Consensus 161 t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~---------------------------------~~~~~ 207 (306)
|+|+||+||++++++++++++||+.|+..++++|+.+++++. ....+
T Consensus 166 ~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~ 245 (426)
T KOG0679|consen 166 TSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQ 245 (426)
T ss_pred ceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875431 01134
Q ss_pred HHHHHHHHhccccccchHHHHhhcccCCcccceEECCCccEEEECCccccccccCCCCCCCC------------CCCccc
Q 021885 208 ETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLY------------FFSVVF 275 (306)
Q Consensus 208 ~~~~~iKe~~~~vs~d~~~~~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~lF~P~~~g------------~~~~~~ 275 (306)
.++++.|+.++.|+.....+. ...+.+++.|++|||...++|.|||.+||.||+|++.- ....|+
T Consensus 246 ~v~~e~ke~v~qv~dtp~de~---~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~ 322 (426)
T KOG0679|consen 246 RVYQEFKESVLQVSDTPFDEE---VAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGL 322 (426)
T ss_pred HHHHHHHHHHHhccCCCCccc---ccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCc
Confidence 577778888888875433221 12346789999999999999999999999999997642 334689
Q ss_pred chhhhhcccccCCCchhhhhhc
Q 021885 276 YPLKLTHAIHCSCSTEHAIIST 297 (306)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~ 297 (306)
..+...||..|++|-|..|+.+
T Consensus 323 ~~lv~sSi~~cDvdiR~~L~~n 344 (426)
T KOG0679|consen 323 PHLVYSSINMCDVDIRSSLLGN 344 (426)
T ss_pred hHHHHhhhccChHHHHHHhhcc
Confidence 9999999999999977755543
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=7.9e-58 Score=429.46 Aligned_cols=291 Identities=41% Similarity=0.712 Sum_probs=250.1
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechh
Q 021885 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWE 81 (306)
Q Consensus 2 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d 81 (306)
|+.++||||+||++||+|||||+.|+.++||+++++...... .++++|++.........+++|+++|.+.|||
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~ 74 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSS-------NDYYVGDEALSPRSNLELRSPIENGVIVDWD 74 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSS-------SSCEETHHHHHTGTGEEEEESEETTEESSHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccc-------eeEEeecccccchhheeeeeecccccccccc
Confidence 688999999999999999999999999999999987654321 2678998866667788899999999999999
Q ss_pred hHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCce
Q 021885 82 DMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (306)
Q Consensus 82 ~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t 161 (306)
.++.+|+|+|.+.|++++.++||++++|+++++..|++++|+|||+|++|+++++++++||+|++|++||+|||+|++.|
T Consensus 75 ~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t 154 (393)
T PF00022_consen 75 ALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSST 154 (393)
T ss_dssp HHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-E
T ss_pred ccccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeee
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecceecccceEEecccchhHHHHHHHHHhhcCCc-----------------cccCChHHHHHHHHHhccccccch
Q 021885 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYS-----------------MNRTADFETVRQIKEKLCYISYDY 224 (306)
Q Consensus 162 ~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----------------~~~~~~~~~~~~iKe~~~~vs~d~ 224 (306)
+|+||+||+++.++++++++||++++++|+++|+.++.. +....+..+++++|+++|+|+.++
T Consensus 155 ~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~ 234 (393)
T PF00022_consen 155 SVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDP 234 (393)
T ss_dssp EEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSH
T ss_pred eeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccc
Confidence 999999999999999999999999999999999997433 223346789999999999999998
Q ss_pred HHHHhhcccCCcccceEECCCccEEEECCccccccccCCCCCCCCCCCc-------ccchhhhhcccccCCCchhhhhhc
Q 021885 225 KREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSV-------VFYPLKLTHAIHCSCSTEHAIIST 297 (306)
Q Consensus 225 ~~~~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 297 (306)
... +...........|.||||+.+.++.|||.+||+||+|+..+.+.. |+++++..++.+|++|.|+ .
T Consensus 235 ~~~-~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~----~ 309 (393)
T PF00022_consen 235 DEE-QEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRK----E 309 (393)
T ss_dssp HHH-HHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHH----H
T ss_pred ccc-cccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccc----c
Confidence 751 111123556788999999999999999999999999999999887 9999999999999999888 5
Q ss_pred CCCccee
Q 021885 298 LPDHFVL 304 (306)
Q Consensus 298 ~~~~~~~ 304 (306)
|.+|++|
T Consensus 310 l~~nIvl 316 (393)
T PF00022_consen 310 LLSNIVL 316 (393)
T ss_dssp HHTTEEE
T ss_pred cccceEE
Confidence 5566665
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=3.1e-56 Score=415.92 Aligned_cols=293 Identities=51% Similarity=0.901 Sum_probs=263.1
Q ss_pred CeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechhhHH
Q 021885 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 84 (306)
Q Consensus 5 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d~l~ 84 (306)
++||||+||++||+||+|++.|++++||++++++...... ...+.+++|+++...++...+++|+++|++.|||.++
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~---~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e 78 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMV---GDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDME 78 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEeccccccc---CCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHH
Confidence 6899999999999999999999999999999875432110 1234678999987777777899999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCceEEE
Q 021885 85 QVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVV 164 (306)
Q Consensus 85 ~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~v~ 164 (306)
.+|+|+|.+.|+++++++|+++++|.++++..|++++|++||.|++|++++++++++++|++|+++|+|||+|++.|+|+
T Consensus 79 ~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 158 (373)
T smart00268 79 KIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVV 158 (373)
T ss_pred HHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEE
Confidence 99999997789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhccc---CCcccceE
Q 021885 165 PVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE---TTILVKNY 241 (306)
Q Consensus 165 pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~---~~~~~~~y 241 (306)
||++|+++.++++++++||++++++|+++|+.++..+....+.++++++|+++||++.++..+.+.... .......|
T Consensus 159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (373)
T smart00268 159 PVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY 238 (373)
T ss_pred EEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE
Confidence 999999999999999999999999999999987666666667899999999999999998877654322 34456789
Q ss_pred ECCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhhhhcCCCccee
Q 021885 242 TLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVL 304 (306)
Q Consensus 242 ~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
.||||+.+.++.|||.+||.||+|+.+|.+..|+++++..++.+|++|-+. .|.+|++|
T Consensus 239 ~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~----~l~~nIvl 297 (373)
T smart00268 239 ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRK----DLYENIVL 297 (373)
T ss_pred ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHH----HHHhCeEe
Confidence 999999999999999999999999999999999999999999999988777 55666555
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=3e-55 Score=409.00 Aligned_cols=293 Identities=50% Similarity=0.860 Sum_probs=262.2
Q ss_pred eEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccC-CceeeceeecCeeechhhHH
Q 021885 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRH-QLDVSYPVNNGIVQNWEDMG 84 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~p~~~g~i~~~d~l~ 84 (306)
+||||+||+++|+||+|++.|++++||++++++...... +...+.+++|+++...+. ...+++|+++|++.||+.++
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~--~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e 78 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMV--GAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDME 78 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCccccc--ccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHH
Confidence 689999999999999999999999999999875543211 123457899999877654 48899999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCceEEE
Q 021885 85 QVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVV 164 (306)
Q Consensus 85 ~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~v~ 164 (306)
.+|+|+|.+.+..+++++|+++++|+++++..|++++++|||.+++|++++++++++++|++|+++|+|||+|++.|+|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~ 158 (371)
T cd00012 79 KIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVV 158 (371)
T ss_pred HHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEE
Confidence 99999998888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhh-cccCCcccceEEC
Q 021885 165 PVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQL-GLETTILVKNYTL 243 (306)
Q Consensus 165 pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~-~~~~~~~~~~y~l 243 (306)
||+||+++.++++++++||++++++|.++|+.++..++...+...++++||++|||+.++..+.+. ..........|.|
T Consensus 159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 238 (371)
T cd00012 159 PVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYEL 238 (371)
T ss_pred EEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEEC
Confidence 999999999999999999999999999999999876677778899999999999999998766421 2233455678999
Q ss_pred CCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhhhhcCCCccee
Q 021885 244 PDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAIISTLPDHFVL 304 (306)
Q Consensus 244 Pdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (306)
|||+.|.+++|||.+||+||+|+++|....|+++.+..++.+|+++.+. .+++|++|
T Consensus 239 pd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~----~l~~~Ivl 295 (371)
T cd00012 239 PDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRK----DLYSNIVL 295 (371)
T ss_pred CCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHH----HHHhCEEE
Confidence 9999999999999999999999999999999999999999999988777 66667665
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.1e-51 Score=383.67 Aligned_cols=293 Identities=45% Similarity=0.756 Sum_probs=256.9
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeC-ccchhhhhcccCCceEeccccccccC--CceeeceeecCeeec
Q 021885 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPM-LRYEESLMEQELKDTIVGAAALDLRH--QLDVSYPVNNGIVQN 79 (306)
Q Consensus 3 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~p~~~g~i~~ 79 (306)
..+++|||+||+++|+||+|++.|++++|+++++.+ +.... .....++.++|+++...++ ..++++|+++|.+.|
T Consensus 5 ~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~--~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 5 NVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVM--EDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCeEEEeCCCceEEeeecCCCCceeeccccccccccccccc--ccccccccccCchhhhccCCccceeecccccCccCC
Confidence 345599999999999999999999999999999875 11111 1234567889999877665 788999999999999
Q ss_pred hhhHHHHHHHHhhc--ccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCC--eEEEEe
Q 021885 80 WEDMGQVWDHAFFS--ELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLL--TGLVID 155 (306)
Q Consensus 80 ~d~l~~ll~~~~~~--~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~--tglVVD 155 (306)
|+.++++|+|.|.+ .+...+.+||++++||++++...|+++++++||+|++|++++..+++|++|++|+. +|+|||
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999987 68888899999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhh-----cCCccccC---ChHHHHHHHHHhcc-------cc
Q 021885 156 SGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSR-----RGYSMNRT---ADFETVRQIKEKLC-------YI 220 (306)
Q Consensus 156 iG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~---~~~~~~~~iKe~~~-------~v 220 (306)
+|++.|+|+||+||.++.++++++++||++++.+|.++|.. +++.+... .+.++++.+|+++| |+
T Consensus 163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~ 242 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV 242 (444)
T ss_pred cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence 99999999999999999999999999999999999999999 55555544 56899999999999 98
Q ss_pred ccchHHHHhhccc----------------CCcccceEECCCccEEEECCc-cccccccCCCCC--CCCCCCcc-------
Q 021885 221 SYDYKREYQLGLE----------------TTILVKNYTLPDGRVIKVGTE-RFQAPEALFTPV--SLYFFSVV------- 274 (306)
Q Consensus 221 s~d~~~~~~~~~~----------------~~~~~~~y~lPdg~~i~l~~e-r~~~~E~lF~P~--~~g~~~~~------- 274 (306)
+.+..++.+.... .......+.+|||+.+.++.| ||.+||.||+|+ ..+.+..|
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~ 322 (444)
T COG5277 243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ 322 (444)
T ss_pred hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence 8886655443221 233467899999999999999 999999999999 77777777
Q ss_pred --------------------cchhhhhcccccCCCchhhhhhc
Q 021885 275 --------------------FYPLKLTHAIHCSCSTEHAIIST 297 (306)
Q Consensus 275 --------------------~~~~~~~~~~~~~~~~~~~~~~~ 297 (306)
+++++.+++++|+.+.|+.++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~n 365 (444)
T COG5277 323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSN 365 (444)
T ss_pred hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhC
Confidence 99999999999998888877665
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=1.3e-49 Score=344.67 Aligned_cols=286 Identities=27% Similarity=0.464 Sum_probs=248.1
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEecccccccc--CCceeeceeecCeeech
Q 021885 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR--HQLDVSYPVNNGIVQNW 80 (306)
Q Consensus 3 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~p~~~g~i~~~ 80 (306)
+.++||+|+|++++|+|+++.+.|..+ |++..+.+.. .++.++|++.-+.+ +.+.++.|+++|.+++|
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~~v-pNcl~kaK~~---------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW 71 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPFVV-PNCLAKAKFG---------RRRSFLANEIDECKDISSLFYRRPHERGYLVNW 71 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCceec-cchhhhcccc---------cchhhhhhhhhhccCccceEEeehhhcceeEee
Confidence 678999999999999999999999865 8888765432 34678888876544 56778899999999999
Q ss_pred hhHHHHHHHHhhcc-cCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhc----C-------C
Q 021885 81 EDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ----G-------L 148 (306)
Q Consensus 81 d~l~~ll~~~~~~~-L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~----g-------~ 148 (306)
+....+|+|+|.+. ++++.+++.+++++|.++-+...+.+.|+|||+|++.+++=...+.++++-. + .
T Consensus 72 ~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~ 151 (400)
T KOG0680|consen 72 DTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSS 151 (400)
T ss_pred hhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCcccccccc
Confidence 99999999999532 3366679999999999999999999999999999999999999999999862 1 2
Q ss_pred CeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHH
Q 021885 149 LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREY 228 (306)
Q Consensus 149 ~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~ 228 (306)
..++|||+|++.|+|+|+.+|.+..++++|+++||+.||++|++.+..++ ++.+.+..+++++||.+||||+||.+++
T Consensus 152 ~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~--lNvmdET~vVNeiKEdvcfVSqnF~~~m 229 (400)
T KOG0680|consen 152 ECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRH--LNVMDETYVVNEIKEDVCFVSQNFKEDM 229 (400)
T ss_pred ceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhh--hcccchhhhhhhhhhheEEechhhHHHH
Confidence 37999999999999999999999999999999999999999999999887 4456678899999999999999999998
Q ss_pred hhcccC---CcccceEECCC-------------------ccEEEECCccccccccCCCCCCCCCCCcccchhhhhccccc
Q 021885 229 QLGLET---TILVKNYTLPD-------------------GRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHC 286 (306)
Q Consensus 229 ~~~~~~---~~~~~~y~lPd-------------------g~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~ 286 (306)
+.++.. +.....|.||| .+.|.|++|||.+||+||+|+.+|++.+|+++-++.|+..|
T Consensus 230 ~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~ 309 (400)
T KOG0680|consen 230 DIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSML 309 (400)
T ss_pred HHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhC
Confidence 887644 24567899998 25899999999999999999999999999999999999999
Q ss_pred CCCchhhhhhcCCCccee
Q 021885 287 SCSTEHAIISTLPDHFVL 304 (306)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~ 304 (306)
|=+-+. .|-+|+|+
T Consensus 310 Pe~~~p----~l~~NIv~ 323 (400)
T KOG0680|consen 310 PEEVRP----LLLENIVC 323 (400)
T ss_pred HHHHHH----HHHhcEEE
Confidence 877666 44555554
No 14
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=3.8e-45 Score=317.36 Aligned_cols=299 Identities=36% Similarity=0.594 Sum_probs=246.8
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccch-hhh-----hcccCCceEeccccccccCCceeeceeec
Q 021885 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYE-ESL-----MEQELKDTIVGAAALDLRHQLDVSYPVNN 74 (306)
Q Consensus 1 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~-~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~p~~~ 74 (306)
|..+.++|+|+|+.++|.||+|...|++++|++++....... ..+ .+....++++|+++.. .+.+.+.||+++
T Consensus 1 ~~~~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRh 79 (415)
T KOG0678|consen 1 MAGNLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRH 79 (415)
T ss_pred CCCCCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceec
Confidence 345667999999999999999999999999999876421111 000 1122348899999988 668899999999
Q ss_pred CeeechhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcC-------
Q 021885 75 GIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG------- 147 (306)
Q Consensus 75 g~i~~~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g------- 147 (306)
|.+.|||.++++|+..+.+.|..+|++|-.||+||+.++++.|+.++|++||.|++|.+|+..++++|+-+.-
T Consensus 80 g~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~e 159 (415)
T KOG0678|consen 80 GQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGE 159 (415)
T ss_pred cccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999889999999999999999999999999999999999999999999999999887653
Q ss_pred -CCeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHH
Q 021885 148 -LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKR 226 (306)
Q Consensus 148 -~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~ 226 (306)
.-||+|||.|.+.|+|+||.+||++-++++..|++|+++|-++++++++++..++.....+.++.+||++||+++|+..
T Consensus 160 r~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivk 239 (415)
T KOG0678|consen 160 RFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVK 239 (415)
T ss_pred heeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHH
Confidence 3689999999999999999999999999999999999999999999999887666556789999999999999999887
Q ss_pred HHhhccc-CCcccceEEC---CCc--cEEEECCccccccccCCCCCCCCCCCcc-cchhhhhcccccCCCchhhhhhcCC
Q 021885 227 EYQLGLE-TTILVKNYTL---PDG--RVIKVGTERFQAPEALFTPVSLYFFSVV-FYPLKLTHAIHCSCSTEHAIISTLP 299 (306)
Q Consensus 227 ~~~~~~~-~~~~~~~y~l---Pdg--~~i~l~~er~~~~E~lF~P~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (306)
+..++.. +...-+.|.= =.| ..++++.|||+.||++|+|.....+..- +...+..-|++|+||.|+ .|+
T Consensus 240 ef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr----~ly 315 (415)
T KOG0678|consen 240 EFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRR----PLY 315 (415)
T ss_pred HHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccch----hhh
Confidence 7655422 1111111211 112 3477789999999999999987766443 445566899999999999 666
Q ss_pred Cccee
Q 021885 300 DHFVL 304 (306)
Q Consensus 300 ~~~~~ 304 (306)
+|.||
T Consensus 316 ~nivl 320 (415)
T KOG0678|consen 316 KNIVL 320 (415)
T ss_pred hHHhh
Confidence 66665
No 15
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=5.6e-38 Score=288.09 Aligned_cols=221 Identities=33% Similarity=0.502 Sum_probs=196.3
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccC-CceeeceeecCeeechh
Q 021885 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRH-QLDVSYPVNNGIVQNWE 81 (306)
Q Consensus 3 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~p~~~g~i~~~d 81 (306)
...|||||+||+.+||||+|+..|+++|++++.+++++...+ .-..+|++.....+ ....++|+++.+|+||+
T Consensus 22 n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~------s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwe 95 (645)
T KOG0681|consen 22 NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGA------SVTLVGNDILNFQGVRSSPRSPFDRNVVTNWE 95 (645)
T ss_pred CCCcEEEeCCceeEeecccCCCCccchhhhhhcccccccccc------ccccccchhhhhhhhhccCCCCCcCCccccHH
Confidence 457999999999999999999999999999999988764332 23367776543221 23568999999999999
Q ss_pred hHHHHHHHHhhcccCCCCC--CCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhc-C---CCeEEEEe
Q 021885 82 DMGQVWDHAFFSELKIDPP--ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ-G---LLTGLVID 155 (306)
Q Consensus 82 ~l~~ll~~~~~~~L~~~~~--~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~-g---~~tglVVD 155 (306)
.+|.+++|+| .+|+++.+ +||+++||+.++|...|.+|+|+|||.||+|+|.+.-+++.|.|.+ + ..+|+||+
T Consensus 96 l~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis 174 (645)
T KOG0681|consen 96 LMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIIS 174 (645)
T ss_pred HHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEe
Confidence 9999999999 89999874 8999999999999999999999999999999999999999999943 3 34699999
Q ss_pred cCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhh
Q 021885 156 SGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQL 230 (306)
Q Consensus 156 iG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~ 230 (306)
+|++.|+|+||.||..+...++++++||.+...||.++|+.+++-+.+..+...++.+++.+|||+.||.+++..
T Consensus 175 ~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~ 249 (645)
T KOG0681|consen 175 MGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIK 249 (645)
T ss_pred cCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHH
Confidence 999999999999999999999999999999999999999999877777788999999999999999999988754
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=4.5e-30 Score=236.37 Aligned_cols=260 Identities=18% Similarity=0.178 Sum_probs=201.6
Q ss_pred eEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccc----cCCceeeceeecCeeechh
Q 021885 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNWE 81 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~d 81 (306)
.++||+||.++|+|+.|+. +.+.+||+++..... .+..++|+++... .....+.+|+++|.+.||+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~---------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~ 79 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT---------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFE 79 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC---------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHH
Confidence 4999999999999999875 466789999875321 1257899998654 3467889999999999999
Q ss_pred hHHHHHHHHhhcccCCCC-CCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEe
Q 021885 82 DMGQVWDHAFFSELKIDP-PECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVID 155 (306)
Q Consensus 82 ~l~~ll~~~~~~~L~~~~-~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVD 155 (306)
.++.+|+|++.+.+...+ ...+++++.|...+...|+.+.+ +||.+|++.++++.+|+||+|++|. .+++|||
T Consensus 80 ~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvD 158 (335)
T PRK13930 80 ATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVD 158 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEE
Confidence 999999999954334223 36789999998888887777666 7999999999999999999999997 5789999
Q ss_pred cCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccCC
Q 021885 156 SGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETT 235 (306)
Q Consensus 156 iG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~~ 235 (306)
+|++.|+++++.+|.++. ....++||+++|+.|.+++..+ +.+. .+.+.++++|+++|++..+...+. . . ..
T Consensus 159 iG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~~~~-~-~-~~ 230 (335)
T PRK13930 159 IGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDEEES-M-E-VR 230 (335)
T ss_pred eCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCCCce-E-E-EE
Confidence 999999999999999875 4567999999999999999875 2222 356789999999999887643221 0 0 01
Q ss_pred cccceEECCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhh
Q 021885 236 ILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAI 294 (306)
Q Consensus 236 ~~~~~y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (306)
.....+.+|+ .+.++.++|. |++|.|- .++...+...+.+|+++.+.++
T Consensus 231 ~~~~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~ 279 (335)
T PRK13930 231 GRDLVTGLPK--TIEISSEEVR--EALAEPL------QQIVEAVKSVLEKTPPELAADI 279 (335)
T ss_pred CccCCCCCCe--eEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCHHHhhHH
Confidence 0112234454 5778877774 8888873 3777888889999987766533
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=1e-29 Score=233.94 Aligned_cols=260 Identities=16% Similarity=0.147 Sum_probs=199.9
Q ss_pred CeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccc----cCCceeeceeecCeeech
Q 021885 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNW 80 (306)
Q Consensus 5 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~ 80 (306)
..|+||+||.++|+|++|++. .+.+||+++.++.. .+.+++|+++... .....+.+|+++|.+.||
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~---------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~ 75 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT---------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADF 75 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC---------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCH
Confidence 469999999999999999876 56899999986431 1246899998754 366788999999999999
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEe
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVID 155 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVD 155 (306)
+.++.+|++++.+.++. +.++|.+++..|.+....++++++.+||.++++.++++.+|+||++++|. ++++|||
T Consensus 76 ~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvD 154 (334)
T PRK13927 76 DVTEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVD 154 (334)
T ss_pred HHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEE
Confidence 99999999999776666 55665444444466777788899999999999999999999999999997 4579999
Q ss_pred cCCCceEEEEe-ecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccC
Q 021885 156 SGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET 234 (306)
Q Consensus 156 iG~~~t~v~pV-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~ 234 (306)
+|++.|+++++ .+|....+. .++||+++|+.|.+++.++ +.+ ..+.+.++++|+++|++..+.... ....
T Consensus 155 iGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~-~~~--~~~~~~ae~iK~~~~~~~~~~~~~--~~~~- 225 (334)
T PRK13927 155 IGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRN-YNL--LIGERTAERIKIEIGSAYPGDEVL--EMEV- 225 (334)
T ss_pred eCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHH-hCc--CcCHHHHHHHHHHhhccCCCCCCc--eEEE-
Confidence 99999999999 777776654 3799999999999999754 222 235678999999999987543111 0000
Q ss_pred CcccceEECCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhhh
Q 021885 235 TILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHAI 294 (306)
Q Consensus 235 ~~~~~~y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (306)
......+.+|+ .+.++.++|. |++|.|. .++...+...+.+|+.+-+.++
T Consensus 226 ~~~~~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~ 275 (334)
T PRK13927 226 RGRDLVTGLPK--TITISSNEIR--EALQEPL------SAIVEAVKVALEQTPPELAADI 275 (334)
T ss_pred eCcccCCCCCe--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHHCCchhhhhh
Confidence 00011234444 5778888885 8888884 3777888899999987755533
No 18
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=99.95 E-value=1.4e-27 Score=218.45 Aligned_cols=202 Identities=24% Similarity=0.351 Sum_probs=172.4
Q ss_pred CceeeceeecCeeec----------hhhHHHHHHHHhhcccCCCCC---CCeeEEecCCCCCHHHHHHHHHHhhhhcCCc
Q 021885 65 QLDVSYPVNNGIVQN----------WEDMGQVWDHAFFSELKIDPP---ECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (306)
Q Consensus 65 ~~~~~~p~~~g~i~~----------~d~l~~ll~~~~~~~L~~~~~---~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~ 131 (306)
.+.+.+|+++|...- .+++.++|+|++.+.|++..+ .+.++++.|....+..-+.+..++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 567899999998753 367899999999999999874 7899999999888888899999999999999
Q ss_pred eeeeehhhhHhhhhcCCCeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccc-----cCCh
Q 021885 132 GVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMN-----RTAD 206 (306)
Q Consensus 132 ~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~-----~~~~ 206 (306)
++.++..+++++||+|.++++|||||++.|+|+||-||.+++++..++++||+++++.|..+|++.++++. ...+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d 337 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID 337 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999886653 4568
Q ss_pred HHHHHHHHHhccccccchHHHH-h--hcccCCcccceEECCCccEEEECCccccccccCCCCCCCCCCC
Q 021885 207 FETVRQIKEKLCYISYDYKREY-Q--LGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFS 272 (306)
Q Consensus 207 ~~~~~~iKe~~~~vs~d~~~~~-~--~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~ 272 (306)
..+++++||+.|....+..... . ..+.++.....|+ +.++.|...+|-.||.|.++++.+
T Consensus 338 ~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kyt------fk~~DE~mlAPlaLF~P~lf~~~~ 400 (618)
T KOG0797|consen 338 WLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYT------FKLGDEVMLAPLALFYPNLFVIEG 400 (618)
T ss_pred HHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeee------eeccchhhccchhhhhhhhhhccc
Confidence 8899999999999886532211 1 1123333344444 677889999999999999988875
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.94 E-value=2e-26 Score=211.93 Aligned_cols=263 Identities=16% Similarity=0.109 Sum_probs=196.7
Q ss_pred eEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccc----cCCceeeceeecCeeechh
Q 021885 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNWE 81 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~d 81 (306)
-+-||+||.++++-..++ .-....||+++....++ +...+.+.+|+++... .....+.+|+++|.+.||+
T Consensus 4 ~~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~-----~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~ 77 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD-----AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFE 77 (333)
T ss_pred eeEEecCcceEEEEECCC-CEEEecCCEEEEecCCC-----CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHH
Confidence 388999999999954332 23445799998753321 0011247799998764 3678889999999999999
Q ss_pred hHHHHHHHHhhcccCCCCCCC-eeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEe
Q 021885 82 DMGQVWDHAFFSELKIDPPEC-KILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVID 155 (306)
Q Consensus 82 ~l~~ll~~~~~~~L~~~~~~~-~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVD 155 (306)
.++.+|+|++.+.++.....+ +++++.|...+...|+. ++.+||.++++.++++.+|++|+|++|. .+++|||
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvD 156 (333)
T TIGR00904 78 VTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVD 156 (333)
T ss_pred HHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEE
Confidence 999999999976554322222 69999999999888877 6668999999999999999999999997 6899999
Q ss_pred cCCCceEEEEe-ecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhcccC
Q 021885 156 SGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET 234 (306)
Q Consensus 156 iG~~~t~v~pV-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~~ 234 (306)
+|++.|++++| .+|....+. .++||+++|+.|.+.+..+. ....+.+.++++|+++|++..++..+... . -
T Consensus 157 iG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~~---~~~~~~~~ae~lK~~l~~~~~~~~~~~~~-~-~ 228 (333)
T TIGR00904 157 IGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRTY---NLLIGEQTAERIKIEIGSAYPLNDEPRKM-E-V 228 (333)
T ss_pred cCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHhccccccccccce-e-e
Confidence 99999999999 777776654 37999999999999987552 22345788999999999987653222111 0 0
Q ss_pred CcccceEECCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchhh
Q 021885 235 TILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHA 293 (306)
Q Consensus 235 ~~~~~~y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 293 (306)
......+.+|++. .++.+ .++|++|.|- .++...+..++.+|+.+.+.+
T Consensus 229 ~~~~~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~ 277 (333)
T TIGR00904 229 RGRDLVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPPELAAD 277 (333)
T ss_pred cCccccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCchhhhh
Confidence 1112346677764 55544 5779999992 366778888888888776553
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.94 E-value=5.1e-26 Score=209.22 Aligned_cols=258 Identities=15% Similarity=0.215 Sum_probs=198.1
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCC-ccCCceEEEeCccchhhhhcccCCceEecccccccc----CCceeeceeecCee
Q 021885 3 NRNVVVCDNGTGYVKCGFAGENFPN-SVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR----HQLDVSYPVNNGIV 77 (306)
Q Consensus 3 ~~~~vViD~Gs~~~k~G~ag~~~P~-~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~p~~~g~i 77 (306)
+...+-||+||.++++ |... .+. ...||+++..... .+-+.+|++|.... +...+.+|+++|.|
T Consensus 3 ~~~~~giDlGt~~~~i-~~~~-~~~~~~~ps~va~~~~~---------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I 71 (335)
T PRK13929 3 QSTEIGIDLGTANILV-YSKN-KGIILNEPSVVAVDTET---------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVI 71 (335)
T ss_pred CCCeEEEEcccccEEE-EECC-CcEEecCCcEEEEECCC---------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCcc
Confidence 4557899999999998 4322 232 3479999864221 12368999997643 66788899999999
Q ss_pred echhhHHHHHHHHhhc---ccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcC-----CC
Q 021885 78 QNWEDMGQVWDHAFFS---ELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG-----LL 149 (306)
Q Consensus 78 ~~~d~l~~ll~~~~~~---~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g-----~~ 149 (306)
.|||..+.+|++++.+ .++.....++++++.|+..+..+|+.+.+ +||.+|++.++++.+|+||++++| ..
T Consensus 72 ~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~ 150 (335)
T PRK13929 72 ADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPV 150 (335)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCc
Confidence 9999999999999963 56666656799999999999999999999 999999999999999999999997 56
Q ss_pred eEEEEecCCCceEEEEe-ecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHH
Q 021885 150 TGLVIDSGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREY 228 (306)
Q Consensus 150 tglVVDiG~~~t~v~pV-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~ 228 (306)
+++|||+|++.|+++++ ++|....+ ..++||+++|+.|.+.+..+ +.+. .+...++++|+++|++..++..+.
T Consensus 151 ~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~-~~~~--~~~~~AE~iK~~l~~~~~~~~~~~ 224 (335)
T PRK13929 151 ANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKK-YNLL--IGERTAEQVKMEIGYALIEHEPET 224 (335)
T ss_pred eEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHHcCCCCCCCCce
Confidence 79999999999999999 55554433 35799999999999999764 2322 356789999999999876532211
Q ss_pred hhcccCCcccceEECCCccEEEECCcccc--ccccCCCCCCCCCCCcccchhhhhcccccCCCchhh
Q 021885 229 QLGLETTILVKNYTLPDGRVIKVGTERFQ--APEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEHA 293 (306)
Q Consensus 229 ~~~~~~~~~~~~y~lPdg~~i~l~~er~~--~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 293 (306)
.. . ......+.+| ..+.++.++|. ++|.+|+ +...+.+++.+|+++.+.+
T Consensus 225 ~~--v-~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~ 276 (335)
T PRK13929 225 ME--V-RGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGD 276 (335)
T ss_pred EE--E-eCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchh
Confidence 00 0 0011123455 46888888876 6888885 6788899999999887663
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.87 E-value=1.4e-21 Score=179.93 Aligned_cols=258 Identities=18% Similarity=0.148 Sum_probs=184.5
Q ss_pred CeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccc----cCCceeeceeecCeeech
Q 021885 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNW 80 (306)
Q Consensus 5 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~ 80 (306)
..+-||+|+.++++-..+ ..-.+..||+++..... ..-+.+|+++... .....+.+|+++|.|.||
T Consensus 4 ~~~gIDlGt~~~~i~~~~-~~~v~~~psvv~~~~~~---------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~ 73 (336)
T PRK13928 4 RDIGIDLGTANVLVYVKG-KGIVLNEPSVVAIDKNT---------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADY 73 (336)
T ss_pred ceeEEEcccccEEEEECC-CCEEEccCCEEEEECCC---------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecH
Confidence 358899999999995543 33333578998765321 1235799998654 256777899999999999
Q ss_pred hhHHHHHHHHhhcccCCC-CCCCe-eEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEE
Q 021885 81 EDMGQVWDHAFFSELKID-PPECK-ILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLV 153 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~-~~~~~-vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglV 153 (306)
+..+.+|+|++ +++... ..++| ++++.|. .....+++.++.+||..|++.++++++|+||++++|. ..++|
T Consensus 74 ~~~~~~l~~~~-~~~~~~~~~~~p~~vitvP~-~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lV 151 (336)
T PRK13928 74 DVTEKMLKYFI-NKACGKRFFSKPRIMICIPT-GITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMV 151 (336)
T ss_pred HHHHHHHHHHH-HHHhccCCCCCCeEEEEeCC-CCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEE
Confidence 99999999999 444333 44677 7777754 4556788888889999999999999999999999987 67899
Q ss_pred EecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccchHHHHhhccc
Q 021885 154 IDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE 233 (306)
Q Consensus 154 VDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d~~~~~~~~~~ 233 (306)
+|+|++.|.++++..|..+.. ...++||+++|+.|.+.+..+ +.+ ..+...++++|++++.+..+...+ ....
T Consensus 152 vDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~~~-~~~--~~~~~~ae~lK~~~~~~~~~~~~~--~~~v 224 (336)
T PRK13928 152 VDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIRKK-YKL--LIGERTAEEIKIKIGTAFPGAREE--EMEI 224 (336)
T ss_pred EEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHHHH-hch--hcCHHHHHHHHHHhcccccccCCc--EEEE
Confidence 999999999999999977754 367999999999999998754 222 234567999999999875542111 0000
Q ss_pred CCcccceEECCCccEEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchh
Q 021885 234 TTILVKNYTLPDGRVIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEH 292 (306)
Q Consensus 234 ~~~~~~~y~lPdg~~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
......+.+|++ +.++.++|. |+++.+- ..+...+...+.+|+.+-..
T Consensus 225 -~g~~~~~~~~~~--~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~~~~~ 272 (336)
T PRK13928 225 -RGRDLVTGLPKT--ITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPPELSA 272 (336)
T ss_pred -ecccccCCCceE--EEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCccccH
Confidence 000112234443 677777766 6666652 24556666777777655443
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.84 E-value=6e-20 Score=166.49 Aligned_cols=203 Identities=16% Similarity=0.201 Sum_probs=152.4
Q ss_pred CeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccc----cCCceeeceeecCeeech
Q 021885 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNW 80 (306)
Q Consensus 5 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~ 80 (306)
+-+-||+||.+|++ |..+..=.+..||+++..... .+-..+|++|... .....+.+|+++|+|.|+
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~---------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~ 71 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT---------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADY 71 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT-----------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC---------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCH
Confidence 46789999999999 444433344568998876432 2356799998653 467889999999999999
Q ss_pred hhHHHHHHHHhhcccCC-CCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEE
Q 021885 81 EDMGQVWDHAFFSELKI-DPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVI 154 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~-~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVV 154 (306)
+..+.+++|++++..+- ......++++.|...+...|+.+.+.+- ..|+..++++++|+++|+++|. ...+||
T Consensus 72 ~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miV 150 (326)
T PF06723_consen 72 EAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIV 150 (326)
T ss_dssp HHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEE
Confidence 99999999999665553 2346679999999999999999999886 5899999999999999999985 457999
Q ss_pred ecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccc
Q 021885 155 DSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYD 223 (306)
Q Consensus 155 DiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d 223 (306)
|+|++.|.+.-+..|.++. .+.+++||+++++.+.+.+++++ +..+....++++|++++++...
T Consensus 151 DIG~GtTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y---~l~Ig~~tAE~iK~~~g~~~~~ 214 (326)
T PF06723_consen 151 DIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKY---NLLIGERTAEKIKIEIGSASPP 214 (326)
T ss_dssp EE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHH---SEE--HHHHHHHHHHH-BSS--
T ss_pred EECCCeEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhh---CcccCHHHHHHHHHhcceeecc
Confidence 9999999999999998885 46779999999999999999883 3457899999999999988754
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.67 E-value=4.8e-15 Score=130.82 Aligned_cols=206 Identities=17% Similarity=0.154 Sum_probs=162.8
Q ss_pred CCeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEecccccc----ccCCceeeceeecCeeec
Q 021885 4 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALD----LRHQLDVSYPVNNGIVQN 79 (306)
Q Consensus 4 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~p~~~g~i~~ 79 (306)
+..+-||+|+.+|++ |.-...--...||+++.....+ ...-+.+|++|.. ..++....+|+++|+|.|
T Consensus 6 s~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~~-------~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd 77 (342)
T COG1077 6 SNDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEGK-------TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIAD 77 (342)
T ss_pred cccceeeecccceEE-EEcCceEEecCceEEEEeecCC-------CceEEEehHHHHHHhccCCCCceEEeecCCcEeec
Confidence 457889999999999 3333333446799998754311 1235679999865 346788899999999999
Q ss_pred hhhHHHHHHHHhhcccCCC--CCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEE
Q 021885 80 WEDMGQVWDHAFFSELKID--PPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGL 152 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~--~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tgl 152 (306)
++..+.+++|++++..+-. ...-.++++.|...+...|+.+-|.+- +-+...+++++.|.+|++++|. +...
T Consensus 78 ~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~-~aGa~~V~lieEp~aAAIGaglpi~ep~G~m 156 (342)
T COG1077 78 FEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAE-SAGAREVYLIEEPMAAAIGAGLPIMEPTGSM 156 (342)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHH-hccCceEEEeccHHHHHhcCCCcccCCCCCE
Confidence 9999999999995433222 233458888888888888888888776 4788999999999999999985 4479
Q ss_pred EEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhccccccc
Q 021885 153 VIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYD 223 (306)
Q Consensus 153 VVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs~d 223 (306)
|||+|.+.|.|..+..|-++.. ....+||+.+++.+-++++++ ++..+....++++|.+.+++.++
T Consensus 157 vvDIGgGTTevaVISlggiv~~--~Sirv~GD~~De~Ii~yvr~~---~nl~IGe~taE~iK~eiG~a~~~ 222 (342)
T COG1077 157 VVDIGGGTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVYVRKK---YNLLIGERTAEKIKIEIGSAYPE 222 (342)
T ss_pred EEEeCCCceeEEEEEecCEEEE--eeEEEecchhhHHHHHHHHHH---hCeeecHHHHHHHHHHhcccccc
Confidence 9999999999999977666643 345699999999999999987 45567788899999999998875
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.23 E-value=3.6e-10 Score=99.11 Aligned_cols=136 Identities=17% Similarity=0.190 Sum_probs=109.2
Q ss_pred eceeecCeeechhhHHHHHHHHhhc---ccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhh
Q 021885 69 SYPVNNGIVQNWEDMGQVWDHAFFS---ELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYA 145 (306)
Q Consensus 69 ~~p~~~g~i~~~d~l~~ll~~~~~~---~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~ 145 (306)
..|+.+|.|.|++..+.+++++... .++. .-..++++.|...+..+|+.+.+ .++..|+.-+.+..++++++.+
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~--~~~~vvisVP~~~~~~~r~a~~~-a~~~aGl~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI--ELTHAATAIPPGTIEGDPKVIVN-VIESAGIEVLHVLDEPTAAAAV 104 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCCcccHHHHHH-HHHHcCCceEEEeehHHHHHHH
Confidence 3688999999999999999999842 2322 33578899998887777876664 4456799999999999999999
Q ss_pred cCCCeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhcc
Q 021885 146 QGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLC 218 (306)
Q Consensus 146 ~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~ 218 (306)
++....+|+|+|++.|.++-+.+|.++. ....++||+++++.+.+.+. .+...++++|....
T Consensus 105 ~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~ 166 (239)
T TIGR02529 105 LQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHK 166 (239)
T ss_pred hcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcC
Confidence 8888889999999999999999998774 45678999999998865553 34677888887654
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.09 E-value=5.7e-09 Score=93.10 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=122.3
Q ss_pred CeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechhhHH
Q 021885 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 84 (306)
Q Consensus 5 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d~l~ 84 (306)
-.++||+||.++|+=.+ +..+. .++ +|+ ..+.+++.|.+.|++...
T Consensus 25 ~~~~iDiGSssi~~vv~-~~~~~-----~~~-------------------~~~---------~~~~~vr~G~i~di~~a~ 70 (267)
T PRK15080 25 LKVGVDLGTANIVLAVL-DEDGQ-----PVA-------------------GAL---------EWADVVRDGIVVDFIGAV 70 (267)
T ss_pred EEEEEEccCceEEEEEE-cCCCC-----EEE-------------------EEe---------ccccccCCCEEeeHHHHH
Confidence 46799999999997543 32222 121 111 234678999999999999
Q ss_pred HHHHHHhh---cccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCce
Q 021885 85 QVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (306)
Q Consensus 85 ~ll~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t 161 (306)
..++++.. +.++.+ -..+.++.|...+...|..+. -..+..|+.-..++.++.+++.+.+...++|||+|++.|
T Consensus 71 ~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt 147 (267)
T PRK15080 71 TIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTT 147 (267)
T ss_pred HHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcE
Confidence 99998884 133443 235666777776666666655 667778999888999999999988877789999999999
Q ss_pred EEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHhc
Q 021885 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKL 217 (306)
Q Consensus 162 ~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~ 217 (306)
.++-+.+|.++.. ...++||+++|+.+.+.+. .+.+.++.+|.+.
T Consensus 148 ~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~---------i~~~eAE~lK~~~ 192 (267)
T PRK15080 148 GISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG---------ISFEEAEQYKRDP 192 (267)
T ss_pred EEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------CCHHHHHHHHhcc
Confidence 9999999987743 5679999999999876653 2456677777664
No 26
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.74 E-value=4e-07 Score=91.27 Aligned_cols=116 Identities=20% Similarity=0.112 Sum_probs=82.8
Q ss_pred echhhHHHHHHHHhh---cccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----C
Q 021885 78 QNWEDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----L 149 (306)
Q Consensus 78 ~~~d~l~~ll~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~ 149 (306)
.-.+....+|+++.. ..++. .-..++++.|...+..+|+.+.+ ..+..|+..+.+++.|+||++++|. .
T Consensus 148 speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~ 224 (673)
T PLN03184 148 AAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASLAYGFEKKSNE 224 (673)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHHHhhcccCCCC
Confidence 334555566666553 22332 23579999999998888877655 5567899999999999999998864 4
Q ss_pred eEEEEecCCCceEEEEeecc--ee-cccceEEecccchhHHHHHHHHHhh
Q 021885 150 TGLVIDSGDGVTHVVPVVDG--YS-FPHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 150 tglVVDiG~~~t~v~pV~dG--~~-~~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
+-+|+|+|++.+.|+.+.-+ .. +..+.-...+||.++++.|.+.+..
T Consensus 225 ~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 225 TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred EEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 67999999999998877432 21 1111123579999999999888754
No 27
>CHL00094 dnaK heat shock protein 70
Probab=98.71 E-value=4e-07 Score=90.68 Aligned_cols=114 Identities=19% Similarity=0.126 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHhh---cccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeE
Q 021885 80 WEDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTG 151 (306)
Q Consensus 80 ~d~l~~ll~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tg 151 (306)
.+....+++++.. ..++. .-..++++.|...+..+|+.+.+. .+..|+..+.++++|.||++++|. .+-
T Consensus 113 eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~v 189 (621)
T CHL00094 113 EEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASLAYGLDKKNNETI 189 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHhccccCCCCEE
Confidence 3445556665553 22322 224688899998888888777665 467899999999999999998874 457
Q ss_pred EEEecCCCceEEEEeecceec---ccceEEecccchhHHHHHHHHHhh
Q 021885 152 LVIDSGDGVTHVVPVVDGYSF---PHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 152 lVVDiG~~~t~v~pV~dG~~~---~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
+|+|+|++.+.|+-+..+... ..+....++||+++|+.|.+.+..
T Consensus 190 lV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 190 LVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred EEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHH
Confidence 999999999999888543211 112234579999999999877654
No 28
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.68 E-value=9.3e-07 Score=87.61 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=82.0
Q ss_pred hhHHHHHHHHhh---cccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEE
Q 021885 81 EDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGL 152 (306)
Q Consensus 81 d~l~~ll~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tgl 152 (306)
+....+++++.. ..++. .-..++++.|...+..+|+.+.+. .+..|+.-+.+++.|.||++++|. .+-+
T Consensus 108 ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 184 (599)
T TIGR01991 108 EVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYA 184 (599)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEE
Confidence 444455555432 23332 235799999999998888887665 577899999999999999988763 4579
Q ss_pred EEecCCCceEEEEee--ccee-cccceEEecccchhHHHHHHHHHhhc
Q 021885 153 VIDSGDGVTHVVPVV--DGYS-FPHLTKRMNVAGRHITSYLVDLLSRR 197 (306)
Q Consensus 153 VVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (306)
|+|+|++.+.|+.+- +|.. +..+.....+||.++++.|.+.+.++
T Consensus 185 V~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 185 VYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred EEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999998773 3322 11111234799999999999988654
No 29
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.66 E-value=1.4e-06 Score=86.18 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=83.6
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEee--cceec-c
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYSF-P 173 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~--dG~~~-~ 173 (306)
..++++.|...+..+|+.+.+. .+..|+.-+.+++.|.||++++|. .+-+|+|+|++.+.|+-+- +|..- .
T Consensus 142 ~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~ 220 (595)
T PRK01433 142 TKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI 220 (595)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence 5789999999888877777655 567899999999999999999874 3469999999999988773 44221 1
Q ss_pred cceEEecccchhHHHHHHHHHhhcCCcccc-CChHHHHHHHHHhccc
Q 021885 174 HLTKRMNVAGRHITSYLVDLLSRRGYSMNR-TADFETVRQIKEKLCY 219 (306)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~iKe~~~~ 219 (306)
.+.-...+||+++++.|.+.+..+- .... ......++..|+.+..
T Consensus 221 at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~ekaK~~LS~ 266 (595)
T PRK01433 221 ATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDTLQLAKKAKETLTY 266 (595)
T ss_pred EEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCC
Confidence 1112346999999999999887652 2211 1123457777877653
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.61 E-value=8.7e-07 Score=88.75 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=74.6
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEee--cceec-
Q 021885 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYSF- 172 (306)
Q Consensus 101 ~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~--dG~~~- 172 (306)
-..++++.|...+..+|+.+.+ ..+..|++-+.++..|.||++++|. .+-+|+|+|++.+.|+.+. +|..-
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKD-AGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 3578999999998888887765 5556799999999999999999875 4679999999999998763 45332
Q ss_pred ccceEEecccchhHHHHHHHHHhh
Q 021885 173 PHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
..+.....+||+++|+.|.+.+..
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHH
Confidence 112233579999999999887754
No 31
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.58 E-value=2.4e-06 Score=85.01 Aligned_cols=114 Identities=14% Similarity=0.068 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhh---cccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEE
Q 021885 81 EDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGL 152 (306)
Q Consensus 81 d~l~~ll~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tgl 152 (306)
+....+++++.. ..++. .-..++++.|...+..+|+.+.+ ..+..|+.-+.++++|.||++++|. .+-+
T Consensus 128 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 204 (616)
T PRK05183 128 EVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQATKD-AARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIA 204 (616)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhhcccCCCCEEE
Confidence 344455555442 23332 23578999999988888877754 4677899999999999999987763 3468
Q ss_pred EEecCCCceEEEEee--ccee-cccceEEecccchhHHHHHHHHHhhc
Q 021885 153 VIDSGDGVTHVVPVV--DGYS-FPHLTKRMNVAGRHITSYLVDLLSRR 197 (306)
Q Consensus 153 VVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (306)
|+|+|++.+.|+.+- .|.. +..+.....+||.++++.|.+.+..+
T Consensus 205 V~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 205 VYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred EEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 999999999988774 3321 11122235799999999999888664
No 32
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.58 E-value=1.1e-06 Score=87.95 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=72.6
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEee--ccee-cc
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-FP 173 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~--dG~~-~~ 173 (306)
..++++.|...+..+|+.+.+. .+..|+.-+.+++.|.||++++|. .+-+|+|+|++.+.|+.+. +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 4689999999998888876655 477899999999999999998864 4579999999999988774 3322 11
Q ss_pred cceEEecccchhHHHHHHHHHhh
Q 021885 174 HLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
.+.....+||.++++.|.+.+..
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHH
Confidence 12223479999999988877654
No 33
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.57 E-value=1.1e-06 Score=87.94 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=72.3
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-------CeEEEEecCCCceEEEEee--cceec
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-------LTGLVIDSGDGVTHVVPVV--DGYSF 172 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-------~tglVVDiG~~~t~v~pV~--dG~~~ 172 (306)
..++++.|...+..+|+.+.+ ..+..|+.-+.+++.|.||++++|. .+-+|+|+|++.+.|+-+- +|..-
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 578999999988887777665 5567899999999999999988753 4689999999999987763 34321
Q ss_pred -ccceEEecccchhHHHHHHHHHhh
Q 021885 173 -PHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 173 -~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
..+.-...+||+++++.|.+.+..
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHH
Confidence 111123479999999999887754
No 34
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.56 E-value=9.2e-07 Score=88.46 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC------CeEEEEecCCCceEEEEee--ccee-c
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~------~tglVVDiG~~~t~v~pV~--dG~~-~ 172 (306)
..++++.|...+..+|+.+.+ ..+..|+.-+.+++.|.|||+++|. .+-+|+|+|++.+.|+-+. +|.. +
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V 212 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV 212 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence 568999999998888887766 4567899999999999999998864 3479999999999988663 2221 1
Q ss_pred ccceEEecccchhHHHHHHHHHhh
Q 021885 173 PHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
..+.....+||+++++.|.+.+..
T Consensus 213 ~at~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 213 KATAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred EEEecCCCcCHHHHHHHHHHHHHH
Confidence 111223479999999998877754
No 35
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.55 E-value=1.7e-06 Score=85.95 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC------CeEEEEecCCCceEEEEeec--cee-c
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVVD--GYS-F 172 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~------~tglVVDiG~~~t~v~pV~d--G~~-~ 172 (306)
..++++.|...+..+|+.+.+ ..+..|+.-+.++++|.||++++|. .+-+|+|+|++.+.++.+.- |.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 468999999999888888766 4556799999999999999988753 45799999999999887742 221 1
Q ss_pred ccceEEecccchhHHHHHHHHHhh
Q 021885 173 PHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
..+.....+||.++|+.|.+.+..
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHH
Confidence 111223479999999999887753
No 36
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.55 E-value=2e-06 Score=85.82 Aligned_cols=94 Identities=18% Similarity=0.159 Sum_probs=72.2
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEeecce--e-cc
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGY--S-FP 173 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~dG~--~-~~ 173 (306)
..++++.|...+..+|+.+.+ ..+..|+.-+.+++.|.||++++|. .+-+|+|+|++.+.++.+.-+. . +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 468999999998888887754 4456899999999999999988763 5689999999999988774331 1 11
Q ss_pred cceEEecccchhHHHHHHHHHhh
Q 021885 174 HLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
.+....++||.++++.|.+.+..
T Consensus 213 a~~gd~~lGG~d~D~~l~~~~~~ 235 (627)
T PRK00290 213 STNGDTHLGGDDFDQRIIDYLAD 235 (627)
T ss_pred EecCCCCcChHHHHHHHHHHHHH
Confidence 11223579999999999887754
No 37
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.44 E-value=5.6e-06 Score=82.69 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=72.6
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEee--cceec-c
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYSF-P 173 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~--dG~~~-~ 173 (306)
..++++.|.......|+.+.+ ..+..|+.-+.+++.|.||++++|. .+-+|+|+|++.+.|+-+. +|..- .
T Consensus 161 ~~aVITVPayF~~~qR~at~~-Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKD-AGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHHH-HHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 468899998888887777655 5567899999999999999998874 4679999999999998874 55332 2
Q ss_pred cceEEecccchhHHHHHHHHHhh
Q 021885 174 HLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
.+.-...+||.++++.|.+.+..
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHH
Confidence 22224579999999998887654
No 38
>PRK11678 putative chaperone; Provisional
Probab=98.32 E-value=7.1e-06 Score=78.45 Aligned_cols=182 Identities=18% Similarity=0.190 Sum_probs=108.3
Q ss_pred eEEEeCCCceEEEeecCCCCC--------CccCCceEEEeCccch--h----------------------h-----hhcc
Q 021885 6 VVVCDNGTGYVKCGFAGENFP--------NSVFPCVVGRPMLRYE--E----------------------S-----LMEQ 48 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~~~P--------~~~~ps~v~~~~~~~~--~----------------------~-----~~~~ 48 (306)
.+-||+||.+.-+++..+..| ...+||+++....... . + ....
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 467999999999999865433 3457888865311000 0 0 0001
Q ss_pred cCCceEeccccccc--c--CCceee---------ceeecCeeechh-hHHHHHHHHhh---cccCCCCCCCeeEEecCCC
Q 021885 49 ELKDTIVGAAALDL--R--HQLDVS---------YPVNNGIVQNWE-DMGQVWDHAFF---SELKIDPPECKILLTDPPL 111 (306)
Q Consensus 49 ~~~~~~~g~~~~~~--~--~~~~~~---------~p~~~g~i~~~d-~l~~ll~~~~~---~~L~~~~~~~~vll~e~~~ 111 (306)
......+|.++... . ....+. .++..+.+...+ .+..+|.++-. ..++. .-..++++.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~--~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQA--AITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCc
Confidence 12355688777432 1 111111 122323222222 23444544431 22322 235688888876
Q ss_pred CC-----HHHHHH--HHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEeecc----------
Q 021885 112 NP-----AKNREK--MVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDG---------- 169 (306)
Q Consensus 112 ~~-----~~~r~~--l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~dG---------- 169 (306)
.. ..+|+. .+.-..+..|++.+.+++.|++|++++|. .+-+|+|+|++.+.++-|--+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 54 455543 24566778899999999999999999873 568999999999988877421
Q ss_pred -eecccceEEecccchhHHHHHH
Q 021885 170 -YSFPHLTKRMNVAGRHITSYLV 191 (306)
Q Consensus 170 -~~~~~~~~~~~~GG~~l~~~l~ 191 (306)
.++.++. ..+||+++|+.|.
T Consensus 240 ~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred eeEEecCC--CCCChHHHHHHHH
Confidence 1222221 3699999999985
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.28 E-value=6.8e-06 Score=75.29 Aligned_cols=185 Identities=13% Similarity=-0.012 Sum_probs=116.1
Q ss_pred EeCCCceEEEeecC-CCCC-CccCCceEEEeCccchhhhh----------cccCCceEeccccccccCCceeeceeecCe
Q 021885 9 CDNGTGYVKCGFAG-ENFP-NSVFPCVVGRPMLRYEESLM----------EQELKDTIVGAAALDLRHQLDVSYPVNNGI 76 (306)
Q Consensus 9 iD~Gs~~~k~G~ag-~~~P-~~~~ps~v~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~ 76 (306)
||+|-.++|+=+.+ +..+ +.+|||+++........... ......+++|+.+..... ....+.+....
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~-~~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAAD-TNRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhccc-Cccceeccccc
Confidence 79999999986642 2233 35788887543221100000 123457788877632211 01111222222
Q ss_pred eechhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhh--------cCCceeeeehhhhHhhhhc--
Q 021885 77 VQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEK--------YNFAGVFIQIQAVLTLYAQ-- 146 (306)
Q Consensus 77 i~~~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~--------~~v~~v~~~~~~~ls~~~~-- 146 (306)
. .-+....++.+++. ..+.+ ....+++--|...-...++.+.+.+-.. ..+..+.+.+|++.|.+..
T Consensus 81 ~-~~~~~~~L~~~Al~-~~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 T-ETPEYMALLRGALA-LSKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred c-CCHHHHHHHHHHHH-HhcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 1 12456677777773 33322 1223555555544456677777776533 4678899999999887754
Q ss_pred -------CCCeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhc
Q 021885 147 -------GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRR 197 (306)
Q Consensus 147 -------g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (306)
...+.+|||+|+..|.++.+-++.+..+.....+.|-..+.+.+.+.|+++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 345569999999999999888888877777778999999999999999866
No 40
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.4e-05 Score=74.66 Aligned_cols=179 Identities=18% Similarity=0.165 Sum_probs=113.3
Q ss_pred CCeEEEeCCCceEEEeecCCC-CCCc--------cCCceEEEeCccchhhhhcccCCceEeccccccc--cCC----cee
Q 021885 4 RNVVVCDNGTGYVKCGFAGEN-FPNS--------VFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL--RHQ----LDV 68 (306)
Q Consensus 4 ~~~vViD~Gs~~~k~G~ag~~-~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~----~~~ 68 (306)
..+|-||+|+.++-+.+.... .|++ ..||+++...+. +.++|..+... ... ..+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~-----------~~~vG~~A~~q~~~~p~~t~~~~ 73 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNG-----------EVLVGQAAKRQAVDNPENTIFSI 73 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCC-----------CEEecHHHHHHhhhCCcceEEEE
Confidence 468999999999999998755 4543 356666543221 45666655321 010 111
Q ss_pred ecee------------ecCeeec-hhhHHHHHHHHhh---cccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCce
Q 021885 69 SYPV------------NNGIVQN-WEDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAG 132 (306)
Q Consensus 69 ~~p~------------~~g~i~~-~d~l~~ll~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~ 132 (306)
+.-+ -.|.... .+....++.++-. ..++ ..-..++++.|......+|..+.+ ..+..|++-
T Consensus 74 kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at~~-A~~iaGl~v 150 (579)
T COG0443 74 KRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQATKD-AARIAGLNV 150 (579)
T ss_pred ehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHHHH-HHHHcCCCe
Confidence 1111 1111122 2222333443221 2232 234678999998888777665554 455689999
Q ss_pred eeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEeec--c-eecccceEEecccchhHHHHHHHHHhh
Q 021885 133 VFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVD--G-YSFPHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 133 v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~d--G-~~~~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
+.+++.|.||+|++|. .+-+|+|+|++.+.|+-|-= | +-+..+.....+||+++++.|.+.+..
T Consensus 151 lrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 151 LRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred EEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 9999999999999985 56799999999999988843 3 112333445689999999998777644
No 41
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.20 E-value=1.2e-05 Score=79.98 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=69.2
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC------CeEEEEecCCCceEEEEee--cceec-
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVV--DGYSF- 172 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~------~tglVVDiG~~~t~v~pV~--dG~~~- 172 (306)
..++++.|...+..+|+.+.+.+ +..|+..+.+++.|.||+++++. .+-+|+|+|++.+.|+.+. +|..-
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46899999999988887776654 46788889999999999987753 4679999999999888773 44322
Q ss_pred ccceEEecccchhHHHHHHHHHhh
Q 021885 173 PHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
........+||+++++.|.+.+..
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccccceecceeeccccc
Confidence 222234579999999999988864
No 42
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.02 E-value=0.00018 Score=67.67 Aligned_cols=90 Identities=23% Similarity=0.201 Sum_probs=70.4
Q ss_pred HHhhhhcCCceeeeehhhhHhhhhcC-----CCeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhh
Q 021885 122 ETMFEKYNFAGVFIQIQAVLTLYAQG-----LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 122 e~lfE~~~v~~v~~~~~~~ls~~~~g-----~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~ 196 (306)
+-++|+-+..--.++-+|+||+.+.= ...+++||+|++.|+|+.+.+|.+... ..+|+||+++|.-+.+.|.
T Consensus 171 ~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~l~- 247 (418)
T COG0849 171 EKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKGLK- 247 (418)
T ss_pred HHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHHhC-
Confidence 34556777777777788888887663 356899999999999999999988744 5679999999999987764
Q ss_pred cCCccccCChHHHHHHHHHhcccccc
Q 021885 197 RGYSMNRTADFETVRQIKEKLCYISY 222 (306)
Q Consensus 197 ~~~~~~~~~~~~~~~~iKe~~~~vs~ 222 (306)
.+.+.+|++|.+++....
T Consensus 248 --------t~~~~AE~iK~~~g~a~~ 265 (418)
T COG0849 248 --------TPFEEAERIKIKYGSALI 265 (418)
T ss_pred --------CCHHHHHHHHHHcCcccc
Confidence 257788888888775443
No 43
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.00 E-value=0.00038 Score=66.25 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEeecceecccceEEecccchhHHH
Q 021885 114 AKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITS 188 (306)
Q Consensus 114 ~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~ 188 (306)
+...+.+.+ +++..|+.-..++.+|++++++... ...+|||+|++.|.++-+.+|.++ .....++||+++++
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHH
Confidence 344445554 6688899999999999999998753 347899999999999999999877 45678999999999
Q ss_pred HHHHHHhhcCCccccCChHHHHHHHHHhccc
Q 021885 189 YLVDLLSRRGYSMNRTADFETVRQIKEKLCY 219 (306)
Q Consensus 189 ~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~ 219 (306)
.+.+.+. .+...++++|.+++.
T Consensus 242 dIa~~l~---------i~~~~AE~lK~~~g~ 263 (420)
T PRK09472 242 DIAYAFG---------TPPSDAEAIKVRHGC 263 (420)
T ss_pred HHHHHhC---------cCHHHHHHHHHhcce
Confidence 9876553 246778888866543
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.98 E-value=0.00022 Score=66.00 Aligned_cols=189 Identities=16% Similarity=0.130 Sum_probs=109.6
Q ss_pred CeEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhh-----------cccCCc---eEeccccccccCCceeec
Q 021885 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLM-----------EQELKD---TIVGAAALDLRHQLDVSY 70 (306)
Q Consensus 5 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~-----------~~~~~~---~~~g~~~~~~~~~~~~~~ 70 (306)
.++-||+|-.+||.=+.. ....+||.++..........+ ...... +++|+++........-.+
T Consensus 3 ~v~~iDiG~g~tK~~~~~---~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~~ 79 (344)
T PRK13917 3 YVMALDFGNGFVKGKIND---EKFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDTY 79 (344)
T ss_pred eEEEEeccCCeEEEEecC---CCEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCcc
Confidence 578899999999995541 123557776543211100000 011224 788877633211000001
Q ss_pred eeecCeeechhhHHHHHHHHhhcccCCC--CCCCeeEE--ecCCCC-CHHHHHHHHHHhhhh-----------cCCceee
Q 021885 71 PVNNGIVQNWEDMGQVWDHAFFSELKID--PPECKILL--TDPPLN-PAKNREKMVETMFEK-----------YNFAGVF 134 (306)
Q Consensus 71 p~~~g~i~~~d~l~~ll~~~~~~~L~~~--~~~~~vll--~e~~~~-~~~~r~~l~e~lfE~-----------~~v~~v~ 134 (306)
-.+. .. .-+.++.++..++...+... .....+++ --|... ..+.++++.+.+-.. ..+..+.
T Consensus 80 ~~~~-~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~ 157 (344)
T PRK13917 80 STND-RY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVK 157 (344)
T ss_pred cccc-cc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEE
Confidence 1111 11 12456777776653222111 11223333 344332 123235565554222 4567788
Q ss_pred eehhhhHhhhhcCC-------------CeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcC
Q 021885 135 IQIQAVLTLYAQGL-------------LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRG 198 (306)
Q Consensus 135 ~~~~~~ls~~~~g~-------------~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~ 198 (306)
+++|++.++|.... ..-+|||+|+..|.++.+.++.+........+.|...+.+.+.+.++.+.
T Consensus 158 V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~ 234 (344)
T PRK13917 158 VVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKKE 234 (344)
T ss_pred EecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhhC
Confidence 99999999875432 24599999999999999999999888777789999999999999996543
No 45
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.61 E-value=0.00037 Score=65.16 Aligned_cols=96 Identities=24% Similarity=0.244 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-----CeEEEEecCCCceEEEEeecceecccceEEecccchhHHH
Q 021885 114 AKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITS 188 (306)
Q Consensus 114 ~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-----~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~ 188 (306)
+...+.+.+ +++..|+.-..+..+|+++++++.. ...+|||+|++.|+++.+.+|.+.. ....++||+++|+
T Consensus 157 ~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~ 233 (371)
T TIGR01174 157 STILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITK 233 (371)
T ss_pred HHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHH
Confidence 344444443 5677899999999999999987642 3469999999999999999998663 4678999999999
Q ss_pred HHHHHHhhcCCccccCChHHHHHHHHHhccccc
Q 021885 189 YLVDLLSRRGYSMNRTADFETVRQIKEKLCYIS 221 (306)
Q Consensus 189 ~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~vs 221 (306)
.+.+.+. .+...++++|.+++...
T Consensus 234 ~i~~~l~---------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 234 DIAKALR---------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred HHHHHhC---------CCHHHHHHHHHHeeEec
Confidence 8876542 34778999999988653
No 46
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.51 E-value=0.00098 Score=63.07 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=80.9
Q ss_pred eeceeecCeeechhhHHHHHHHHhhcccCCCCC--CCeeEEecCCCCCHHHHHHHHHHhh---hhcCCceeeeehhhhHh
Q 021885 68 VSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPP--ECKILLTDPPLNPAKNREKMVETMF---EKYNFAGVFIQIQAVLT 142 (306)
Q Consensus 68 ~~~p~~~g~i~~~d~l~~ll~~~~~~~L~~~~~--~~~vll~e~~~~~~~~r~~l~e~lf---E~~~v~~v~~~~~~~ls 142 (306)
+..|+......|-+.++.+.+.-| ++-++.++ +..+.++....+..++-++..+-+= ..|=|....+--..+++
T Consensus 53 ~fTPl~~~~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva 131 (475)
T PRK10719 53 YFTPLLKQGEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA 131 (475)
T ss_pred eecCCCCCccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh
Confidence 356887767778899999999999 67788775 3444444444444444444444311 11111111111122222
Q ss_pred hhhcC--------CCeEEEEecCCCceEEEEeecceecccceEEecccchhHHH-----------HHHHHHhhcCCccc
Q 021885 143 LYAQG--------LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITS-----------YLVDLLSRRGYSMN 202 (306)
Q Consensus 143 ~~~~g--------~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~-----------~l~~~l~~~~~~~~ 202 (306)
.+|+| ....++||+|++.|+++-+.+|.++.. ...++||+.++. -.+.+++..+.++.
T Consensus 132 ~~ASg~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~~~ 208 (475)
T PRK10719 132 GKGAGAQTLSEERNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETDSQGRVTYISPPGQMILDELGLAIT 208 (475)
T ss_pred HHHhhHHHhhhhccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEECCCCCEEEEChHHHHHHHHcCCCcc
Confidence 33332 245689999999999999999998854 567999997664 45666777665543
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=97.41 E-value=0.012 Score=54.51 Aligned_cols=124 Identities=10% Similarity=0.083 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHhhcccCCCCC------------------CCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhH
Q 021885 80 WEDMGQVWDHAFFSELKIDPP------------------ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVL 141 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~------------------~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~l 141 (306)
-+.++..+++-..+.+..+.. ...++++. .++...+.+.++ |++.|+.-..+..++++
T Consensus 93 ~~el~~~i~~e~~~~ip~~~~e~~~D~~~~~~~~~~~~~~~~v~v~a---~~~~~v~~~~~~-~~~aGl~~~~id~~~~A 168 (348)
T TIGR01175 93 ERELEFAVYIEASHYIPYPIEEVSLDFEKLGLKANNPESTVQVLLAA---TRKEVVDSRLHA-LKLAGLEPKVVDVESFA 168 (348)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHheeeeEEccCCCCCCCceEEEEEEE---ecHHHHHHHHHH-HHHcCCceEEEecHHHH
Confidence 356777777666555543321 11233332 245555555555 56677764445445544
Q ss_pred h--hhh--------c-CCC-eEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHH
Q 021885 142 T--LYA--------Q-GLL-TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFET 209 (306)
Q Consensus 142 s--~~~--------~-g~~-tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~ 209 (306)
. ++. . ... +.++||+|++.|+++-+.+|.+.. .+..++||.++++.+.+.+. .+.+.
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G~~~i~~~i~~~~~---------~~~~~ 237 (348)
T TIGR01175 169 LLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPFGTRQLTSELSRAYG---------LNPEE 237 (348)
T ss_pred HHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeechHHHHHHHHHHHcC---------CCHHH
Confidence 3 442 1 122 488999999999999999998874 57789999999998865542 13455
Q ss_pred HHHHHHhcc
Q 021885 210 VRQIKEKLC 218 (306)
Q Consensus 210 ~~~iKe~~~ 218 (306)
++++|.+..
T Consensus 238 Ae~~k~~~~ 246 (348)
T TIGR01175 238 AGEAKQQGG 246 (348)
T ss_pred HHHHHhcCC
Confidence 566665544
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.03 E-value=0.0032 Score=57.68 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=66.9
Q ss_pred HHHHHhhcccCCCCCCCeeEEecCCC---CC--HHHHHHH----HHHhh-------hhcCCceeeeehhhhHhhhhc---
Q 021885 86 VWDHAFFSELKIDPPECKILLTDPPL---NP--AKNREKM----VETMF-------EKYNFAGVFIQIQAVLTLYAQ--- 146 (306)
Q Consensus 86 ll~~~~~~~L~~~~~~~~vll~e~~~---~~--~~~r~~l----~e~lf-------E~~~v~~v~~~~~~~ls~~~~--- 146 (306)
+..|++ .+-++.+.+-.+++.-|.. .. ...++.+ ..++. +.+.+..+.+.+++++|.|..
T Consensus 81 av~haL-~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHAL-LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHH-HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHH-HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 446677 4557777666677777621 11 1112222 11221 234577899999999998864
Q ss_pred --CCCeEEEEecCCCceEEEEeecceecccce-EEecccchhHHHHHHHHHhhcC
Q 021885 147 --GLLTGLVIDSGDGVTHVVPVVDGYSFPHLT-KRMNVAGRHITSYLVDLLSRRG 198 (306)
Q Consensus 147 --g~~tglVVDiG~~~t~v~pV~dG~~~~~~~-~~~~~GG~~l~~~l~~~l~~~~ 198 (306)
...+-+|||+|+..|.++.|..+....+.. ...+.|-..+.+.+.+.|...+
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~ 214 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSAG 214 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--S
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHhc
Confidence 246789999999999999887765443333 3457888999999999887743
No 49
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0094 Score=58.94 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=71.9
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC----------CeEEEEecCCCceEEEEeeccee
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL----------LTGLVIDSGDGVTHVVPVVDGYS 171 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~----------~tglVVDiG~~~t~v~pV~dG~~ 171 (306)
..++++.|++.....|+.+++..= -.|..-+++++...++|..+|. +.-++-|+|+++|.++-|..-.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa~-iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAAQ-IAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHHH-hcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 468999999999999998887643 4577788999999999987774 55799999999999988853222
Q ss_pred ccc-------ce------EEecccchhHHHHHHHHHhh
Q 021885 172 FPH-------LT------KRMNVAGRHITSYLVDLLSR 196 (306)
Q Consensus 172 ~~~-------~~------~~~~~GG~~l~~~l~~~l~~ 196 (306)
-.. .+ ....+||..+++.|++.|..
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 111 11 12368999999999998854
No 50
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.73 E-value=0.049 Score=51.78 Aligned_cols=131 Identities=15% Similarity=0.236 Sum_probs=88.8
Q ss_pred eeceeecCeeechhhHHHHHHHHhhcccCCCCC--CC-eeEEecCCCCCHHHHHHHHHHhhhhcCC---ceeeeehhhhH
Q 021885 68 VSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPP--EC-KILLTDPPLNPAKNREKMVETMFEKYNF---AGVFIQIQAVL 141 (306)
Q Consensus 68 ~~~p~~~g~i~~~d~l~~ll~~~~~~~L~~~~~--~~-~vll~e~~~~~~~~r~~l~e~lfE~~~v---~~v~~~~~~~l 141 (306)
+..|+......|-+.++++.+.-| ++-++.++ +. .|++|- ...-+++-+.+.+.|-+..|= ..-----.+++
T Consensus 50 ~fTPl~~~~~ID~~al~~iv~~eY-~~Agi~p~~I~TGAVIITG-ETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsii 127 (473)
T PF06277_consen 50 YFTPLLSQTEIDAEALKEIVEEEY-RKAGITPEDIDTGAVIITG-ETARKENAREVLHALSGFAGDFVVATAGPDLESII 127 (473)
T ss_pred cccCCCCCCccCHHHHHHHHHHHH-HHcCCCHHHCccccEEEec-chhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHH
Confidence 357888777778999999999999 77888875 33 455554 333445555566666554431 11111135677
Q ss_pred hhhhcCC--------CeEEEEecCCCceEEEEeecceecccceEEecccch-----------hHHHHHHHHHhhcCCccc
Q 021885 142 TLYAQGL--------LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGR-----------HITSYLVDLLSRRGYSMN 202 (306)
Q Consensus 142 s~~~~g~--------~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~-----------~l~~~l~~~l~~~~~~~~ 202 (306)
|..++|. .+-+=+|||.+.|+++-.-+|.++..++ +++||+ .+..-++.+++..+.++.
T Consensus 128 AgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~~ 205 (473)
T PF06277_consen 128 AGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLELS 205 (473)
T ss_pred hccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCCC
Confidence 7777762 4455689999999999999999996554 588987 456667777877776543
No 51
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=96.63 E-value=0.038 Score=51.07 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=62.1
Q ss_pred chhhHHHHHHHHhhcccCCCCCC-----------------CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeee--ehhh
Q 021885 79 NWEDMGQVWDHAFFSELKIDPPE-----------------CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFI--QIQA 139 (306)
Q Consensus 79 ~~d~l~~ll~~~~~~~L~~~~~~-----------------~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~--~~~~ 139 (306)
+.+.++..+++-..+++..+.++ ..|+++.. ++..-+..+ -+|+..|..-..+ -.-+
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~-~~~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYV-ELFEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHH-HHHHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHH-HHHHHcCCceEEEeehHHH
Confidence 44667777777776666654332 22333332 223323333 2566677654333 2334
Q ss_pred hHhhhhc---------CCCeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHH
Q 021885 140 VLTLYAQ---------GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLL 194 (306)
Q Consensus 140 ~ls~~~~---------g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l 194 (306)
++-+|.. ...+-++||+|++.|+++-+.+|.++- .+.+++||+.+++.+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~ 223 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIAREL 223 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhc
Confidence 4444433 123458999999999999999999884 4677999999999887664
No 52
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.58 E-value=0.22 Score=45.20 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=37.5
Q ss_pred EEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHh
Q 021885 151 GLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLS 195 (306)
Q Consensus 151 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~ 195 (306)
..|+|||++.|.+.-+++|+++.. +..++||+++++.+.+...
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~ 237 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYS 237 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhC
Confidence 358999999999999999999854 7889999999999877653
No 53
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=96.53 E-value=0.00066 Score=64.43 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=40.4
Q ss_pred EEEECCccccccccCCCCCCCCCCCcccchhhhhcccccCCCchh
Q 021885 248 VIKVGTERFQAPEALFTPVSLYFFSVVFYPLKLTHAIHCSCSTEH 292 (306)
Q Consensus 248 ~i~l~~er~~~~E~lF~P~~~g~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
.+.++-||+.+||++|+|+++|+++.|+.+++.-.+.+.+-++..
T Consensus 512 qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~ 556 (645)
T KOG0681|consen 512 QLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQE 556 (645)
T ss_pred hhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhH
Confidence 466888999999999999999999999999998888888877666
No 54
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=96.14 E-value=0.0033 Score=52.76 Aligned_cols=131 Identities=21% Similarity=0.225 Sum_probs=85.0
Q ss_pred eeecCeeechh----hHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhc
Q 021885 71 PVNNGIVQNWE----DMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ 146 (306)
Q Consensus 71 p~~~g~i~~~d----~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~ 146 (306)
-++.|.+.|+- .++++.+. +.++|++.... ---..||-+.... .++.--..|.-|...++.++.|.++++-.
T Consensus 62 vVRDGiVvdf~eaveiVrrlkd~-lEk~lGi~~th--a~taiPPGt~~~~-~ri~iNViESAGlevl~vlDEPTAaa~vL 137 (277)
T COG4820 62 VVRDGIVVDFFEAVEIVRRLKDT-LEKQLGIRFTH--AATAIPPGTEQGD-PRISINVIESAGLEVLHVLDEPTAAADVL 137 (277)
T ss_pred hhccceEEehhhHHHHHHHHHHH-HHHhhCeEeee--ccccCCCCccCCC-ceEEEEeecccCceeeeecCCchhHHHHh
Confidence 45678887763 23333333 33677765321 1112233321111 12222356788999999999999999999
Q ss_pred CCCeEEEEecCCCceEEEEeecceecccceEEecccchhHHHHHHHHHhhcCCccccCChHHHHHHHHHh
Q 021885 147 GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEK 216 (306)
Q Consensus 147 g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~ 216 (306)
+.++|.|||+|.+.|-|.-+-+|.++..+ .-+.||.+++-.|. | +..++.+.++++|..
T Consensus 138 ~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlA------G---~ygi~~EeAE~~Kr~ 196 (277)
T COG4820 138 QLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLA------G---NYGISLEEAEQYKRG 196 (277)
T ss_pred ccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEe------c---ccCcCHhHHHHhhhc
Confidence 99999999999999999999999998654 34788988775442 1 012346667777654
No 55
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.15 Score=50.30 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC------------CeEEEEecCCCceEEEEee
Q 021885 100 PECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------------LTGLVIDSGDGVTHVVPVV 167 (306)
Q Consensus 100 ~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~------------~tglVVDiG~~~t~v~pV~ 167 (306)
.-.++++..|.+.+..+|..+++..= -.|+.-+.++..-.+++.++|. .+-+-||+||+.++++...
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA~-iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAAR-IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHHh-hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 44678999999999999999988764 4678888899998888888873 4478899999999988774
Q ss_pred c--ceec-ccceEEecccchhHHHHHHHHHhhc
Q 021885 168 D--GYSF-PHLTKRMNVAGRHITSYLVDLLSRR 197 (306)
Q Consensus 168 d--G~~~-~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (306)
- |..- ..+...-.+||+++++.|.+.+...
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 3 3221 1222334799999999998887553
No 56
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.61 E-value=0.23 Score=45.00 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=55.7
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeeh---hhhHhhhh----cCCCeEEEEecCCCceEEEEeecceecc
Q 021885 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQI---QAVLTLYA----QGLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (306)
Q Consensus 101 ~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~---~~~ls~~~----~g~~tglVVDiG~~~t~v~pV~dG~~~~ 173 (306)
+..++-|.... .-.+++.+++.+.+..|++ +-++. .+.++..+ ....+++++|+|.++|.++-+.+|.+.
T Consensus 72 ~i~~vaTsa~R-~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~- 148 (300)
T TIGR03706 72 EVRAVATAALR-DAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG- 148 (300)
T ss_pred eEEEEEcHHHH-cCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe-
Confidence 34444444333 3456777888887777763 33433 33332222 123457999999999999998888765
Q ss_pred cceEEecccchhHHHHH
Q 021885 174 HLTKRMNVAGRHITSYL 190 (306)
Q Consensus 174 ~~~~~~~~GG~~l~~~l 190 (306)
....+|+|.-.+++.+
T Consensus 149 -~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 149 -EGVSLPLGCVRLTEQF 164 (300)
T ss_pred -EEEEEccceEEhHHhh
Confidence 3467899998888765
No 57
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.43 E-value=0.14 Score=49.82 Aligned_cols=74 Identities=18% Similarity=0.100 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHhhhhcCCceeeee---hhhhHhhhhc-----CCCeEEEEecCCCceEEEEeecceecccceEEecccch
Q 021885 113 PAKNREKMVETMFEKYNFAGVFIQ---IQAVLTLYAQ-----GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGR 184 (306)
Q Consensus 113 ~~~~r~~l~e~lfE~~~v~~v~~~---~~~~ls~~~~-----g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~ 184 (306)
.-.+++.+++-+.+..|++ +-++ ..+-++..|. ...+++|+|+|.++|.++-+-+|.+. ....+|+|.-
T Consensus 89 eA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~v 165 (496)
T PRK11031 89 LAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SLFSLSMGCV 165 (496)
T ss_pred cCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--eeeEEeccch
Confidence 4455677777777777764 2222 2222222211 12358999999999999999888766 3467899997
Q ss_pred hHHHH
Q 021885 185 HITSY 189 (306)
Q Consensus 185 ~l~~~ 189 (306)
.+++.
T Consensus 166 rl~e~ 170 (496)
T PRK11031 166 TWLER 170 (496)
T ss_pred HHHHH
Confidence 76644
No 58
>PRK10854 exopolyphosphatase; Provisional
Probab=93.69 E-value=0.15 Score=49.91 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHhhhhcCCceeeeeh---hhhHhhhhc-----CCCeEEEEecCCCceEEEEeecceecccceEEecccch
Q 021885 113 PAKNREKMVETMFEKYNFAGVFIQI---QAVLTLYAQ-----GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGR 184 (306)
Q Consensus 113 ~~~~r~~l~e~lfE~~~v~~v~~~~---~~~ls~~~~-----g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~ 184 (306)
.-.+++.+++-+.+..|++ +-+++ .+-++..|. ...+++|||+|.++|.++-+-+|.+.. ....++|.-
T Consensus 94 eA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~v 170 (513)
T PRK10854 94 QALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCV 170 (513)
T ss_pred cCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--eEEEeccee
Confidence 4455677777777777764 22222 222222211 124689999999999999998886553 344588887
Q ss_pred hHHHH
Q 021885 185 HITSY 189 (306)
Q Consensus 185 ~l~~~ 189 (306)
.+++.
T Consensus 171 rl~e~ 175 (513)
T PRK10854 171 SFAQL 175 (513)
T ss_pred eHHhh
Confidence 77663
No 59
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=92.91 E-value=1.1 Score=40.93 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=26.6
Q ss_pred hhcCCCeEEEEecCCCceEEEEeecceeccc
Q 021885 144 YAQGLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (306)
Q Consensus 144 ~~~g~~tglVVDiG~~~t~v~pV~dG~~~~~ 174 (306)
++....+++.+|+|..+|.|+||.+|.+...
T Consensus 123 la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 123 IAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 3345788999999999999999999998753
No 60
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.79 E-value=0.37 Score=46.69 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhhcCCceeeee---hhhhHhhhhc----C-CCeEEEEecCCCceEEEEeecceecccceEEecccchhHH
Q 021885 116 NREKMVETMFEKYNFAGVFIQ---IQAVLTLYAQ----G-LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHIT 187 (306)
Q Consensus 116 ~r~~l~e~lfE~~~v~~v~~~---~~~~ls~~~~----g-~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l~ 187 (306)
+.+...+.+-+.+|++ +-++ ..+-++.+|. + ...++|+|+|.++|.++-+-+..+. ....+++|.-.++
T Consensus 89 N~~eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt 165 (492)
T COG0248 89 NGDEFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLT 165 (492)
T ss_pred CHHHHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEee
Confidence 3445555555566664 2222 2333333322 3 6789999999999999988765554 2455677766555
Q ss_pred HHH
Q 021885 188 SYL 190 (306)
Q Consensus 188 ~~l 190 (306)
+.+
T Consensus 166 ~~~ 168 (492)
T COG0248 166 ERF 168 (492)
T ss_pred hhh
Confidence 444
No 61
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=89.52 E-value=0.42 Score=43.19 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=24.4
Q ss_pred hHhhh-hcCCCeEEEEecCCCceEEEEeecceec
Q 021885 140 VLTLY-AQGLLTGLVIDSGDGVTHVVPVVDGYSF 172 (306)
Q Consensus 140 ~ls~~-~~g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (306)
..+++ ..|..++++||+|..+|.|.+|.+|.+.
T Consensus 67 ~ga~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 67 IGAAARLTGLENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp HHHHH--HT-SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred hhhhhhcCCCCCEEEEeCCCCEEEEEEEECCeee
Confidence 33445 5688999999999999999999999985
No 62
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=89.21 E-value=1.4 Score=39.27 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCe-----EEEEecCCCceEEEEee-cceecccceEEecccchhHHH
Q 021885 115 KNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLT-----GLVIDSGDGVTHVVPVV-DGYSFPHLTKRMNVAGRHITS 188 (306)
Q Consensus 115 ~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~t-----glVVDiG~~~t~v~pV~-dG~~~~~~~~~~~~GG~~l~~ 188 (306)
..-+++++.|-++++++.---...+-||..++=.+- -.|+|+|.++|...-|- +|.+. ..++-=+|+.+|.
T Consensus 95 l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mVTm 171 (332)
T PF08841_consen 95 LQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMVTM 171 (332)
T ss_dssp -TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHHHH
T ss_pred ccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhhHH
Confidence 344678888999999998888888888888764322 46889999999988774 44332 2334456788888
Q ss_pred HHHHHHhhcCCccccCChHHHHHHHHHh
Q 021885 189 YLVDLLSRRGYSMNRTADFETVRQIKEK 216 (306)
Q Consensus 189 ~l~~~l~~~~~~~~~~~~~~~~~~iKe~ 216 (306)
.+...|-.. +++++++||+.
T Consensus 172 lI~sELGl~--------d~~lAE~IKky 191 (332)
T PF08841_consen 172 LINSELGLE--------DRELAEDIKKY 191 (332)
T ss_dssp HHHHHCT-S---------HHHHHHHHHS
T ss_pred HHHHhhCCC--------CHHHHHHhhhc
Confidence 887665432 78999999975
No 63
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=2.3 Score=42.20 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=66.9
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC-------CeEEEEecCCCceEEEEee--cce-
Q 021885 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-------LTGLVIDSGDGVTHVVPVV--DGY- 170 (306)
Q Consensus 101 ~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~-------~tglVVDiG~~~t~v~pV~--dG~- 170 (306)
-..++++.|......+|..+-+ .-...|++.+-+++.|.+++.++|. .+-+|.|.|.+...|.++. +|.
T Consensus 143 v~~aviTVPa~F~~~Qr~at~~-A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~ 221 (620)
T KOG0101|consen 143 VKKAVVTVPAYFNDSQRAATKD-AALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIF 221 (620)
T ss_pred eeeEEEEecCCcCHHHHHHHHH-HHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchh
Confidence 3567788887766666655443 4445788899999999999998873 4559999999998888873 342
Q ss_pred ecccceEEecccchhHHHHHHHHHh
Q 021885 171 SFPHLTKRMNVAGRHITSYLVDLLS 195 (306)
Q Consensus 171 ~~~~~~~~~~~GG~~l~~~l~~~l~ 195 (306)
.+....-..++||.++++.|.+.+.
T Consensus 222 ~vkat~gd~~lGGedf~~~l~~h~~ 246 (620)
T KOG0101|consen 222 EVKATAGDTHLGGEDFDNKLVNHFA 246 (620)
T ss_pred hhhhhcccccccchhhhHHHHHHHH
Confidence 1223334468999998888766653
No 64
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=87.67 E-value=6.4 Score=36.02 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=82.7
Q ss_pred eeceeecCeeechhhHHHHHHHHhhcccCCCCC---CCeeEEecCCCCCHHHHHHHHHHhhhhcC---CceeeeehhhhH
Q 021885 68 VSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPP---ECKILLTDPPLNPAKNREKMVETMFEKYN---FAGVFIQIQAVL 141 (306)
Q Consensus 68 ~~~p~~~g~i~~~d~l~~ll~~~~~~~L~~~~~---~~~vll~e~~~~~~~~r~~l~e~lfE~~~---v~~v~~~~~~~l 141 (306)
+..|+...--.+.+.++++...-+ ..-++.++ ...++++-...-.+..|..+. .|-...| +...----.++-
T Consensus 52 ~FTPv~~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~vl~-alSg~aGDFVVAtAGPdLESiI 129 (473)
T COG4819 52 FFTPVDKQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPVLM-ALSGSAGDFVVATAGPDLESII 129 (473)
T ss_pred eeeeecccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHHHH-HhhhcccceEEEecCCCHHHHh
Confidence 346775544456677888887777 56677764 345666655444433333222 2211111 111111112222
Q ss_pred -------hhhhcCCCeE-EEEecCCCceEEEEeecceecccceEEecccchhH------------HHHHHHHHhhcCCcc
Q 021885 142 -------TLYAQGLLTG-LVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHI------------TSYLVDLLSRRGYSM 201 (306)
Q Consensus 142 -------s~~~~g~~tg-lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~~l------------~~~l~~~l~~~~~~~ 201 (306)
-.|+-.+.++ +=+|+|.+.|+..-.-.|.+...++ +++||+.+ ..-...++.+.+.+.
T Consensus 130 AGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLik~drst~~v~Yi~~k~q~lI~~~g~~i 207 (473)
T COG4819 130 AGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLIKTDRSTGRVVYIHKKGQMLIDECGGAI 207 (473)
T ss_pred ccCCccccchhhhhceEEEEEeccCCccceeeeccccccccee--eecCcEEEEeecccceEEEEccchHHHHHHcCCCc
Confidence 2233334555 4489999999999998898886655 58999854 233455555555443
Q ss_pred cc----------CChHHHHHHHHHhcccccc
Q 021885 202 NR----------TADFETVRQIKEKLCYISY 222 (306)
Q Consensus 202 ~~----------~~~~~~~~~iKe~~~~vs~ 222 (306)
.. ...+++++-+++...+-++
T Consensus 208 t~g~k~~~~~l~~v~~emaell~~~v~~ga~ 238 (473)
T COG4819 208 TDGRKLTGAQLVQVTREMAELLVEVVDFGAL 238 (473)
T ss_pred chhhccCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 21 1235566667776665444
No 65
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=87.43 E-value=2.8 Score=32.32 Aligned_cols=59 Identities=25% Similarity=0.319 Sum_probs=39.6
Q ss_pred EEEecCCCceEEEEeecceecccceEEeccc--------chhHH--HHHHHHHhhcCCccccCChHHHHHHH-HHhcccc
Q 021885 152 LVIDSGDGVTHVVPVVDGYSFPHLTKRMNVA--------GRHIT--SYLVDLLSRRGYSMNRTADFETVRQI-KEKLCYI 220 (306)
Q Consensus 152 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~G--------G~~l~--~~l~~~l~~~~~~~~~~~~~~~~~~i-Ke~~~~v 220 (306)
++||+|.+.|.++-...+.... ...+++| |..++ +.+.+-++.- ...++++ |.+...+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a---------~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKIA---------IEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHHH---------HHHHHHHhCCeeeEE
Confidence 6899999999998888776553 6778999 99999 8888777642 5567777 7765544
Q ss_pred c
Q 021885 221 S 221 (306)
Q Consensus 221 s 221 (306)
.
T Consensus 71 ~ 71 (120)
T PF14450_consen 71 Y 71 (120)
T ss_dssp -
T ss_pred E
Confidence 3
No 66
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=86.98 E-value=3.4 Score=36.41 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=15.5
Q ss_pred EEEeCCCceEEEeecCC
Q 021885 7 VVCDNGTGYVKCGFAGE 23 (306)
Q Consensus 7 vViD~Gs~~~k~G~ag~ 23 (306)
+.||+|-++++.|+..+
T Consensus 3 L~iDiGNT~~~~a~~~~ 19 (251)
T COG1521 3 LLIDIGNTRIVFALYEG 19 (251)
T ss_pred EEEEeCCCeEEEEEecC
Confidence 78999999999999874
No 67
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=4.9 Score=37.73 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=68.2
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCC------CeEEEEecCCCceEEEE--eecceec-
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVP--VVDGYSF- 172 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~------~tglVVDiG~~~t~v~p--V~dG~~~- 172 (306)
...+++.|......+|+..-+.= --.|..-+.+++.|.+|+.++|. .+-+|.|+|.+.-.|.- |-.|.--
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDAG-tIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDAG-TIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhcccc-eeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 35566777776777776654321 11244567788999999988864 67899999999776654 3444321
Q ss_pred ccceEEecccchhHHHHHHHHHh----h-cCCccccCChHHHHHHHHHh
Q 021885 173 PHLTKRMNVAGRHITSYLVDLLS----R-RGYSMNRTADFETVRQIKEK 216 (306)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~----~-~~~~~~~~~~~~~~~~iKe~ 216 (306)
..+.-.-.+||.++++..++.+- + .+.++ ..+...++.++++
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv--~kdnkA~~KLrRe 298 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDV--RKDNKAVQKLRRE 298 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCcc--chhhHHHHHHHHH
Confidence 11122346899999887666542 2 23333 3345555555443
No 68
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=86.45 E-value=1 Score=40.42 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhhhcCCceeeeeh---hh------hHhhhhcCCCeEEEEecCCCceEEEEeecceecccceEEecccch
Q 021885 114 AKNREKMVETMFEKYNFAGVFIQI---QA------VLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGR 184 (306)
Q Consensus 114 ~~~r~~l~e~lfE~~~v~~v~~~~---~~------~ls~~~~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~GG~ 184 (306)
-.+++.+.+.+.+..|++ +-+++ .+ +.+.+ ....+++|+|+|.++|.++-+-+|.+.. ...+|+|.-
T Consensus 70 A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~v 145 (285)
T PF02541_consen 70 AKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGAV 145 (285)
T ss_dssp STTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEETTEEEE--EEEES--HH
T ss_pred CcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEECCeeeE--eeeeehHHH
Confidence 455677788888888874 33332 22 22222 3678899999999999999999998774 467899998
Q ss_pred hHHHHH
Q 021885 185 HITSYL 190 (306)
Q Consensus 185 ~l~~~l 190 (306)
.+++.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887666
No 69
>PRK13321 pantothenate kinase; Reviewed
Probab=82.88 E-value=7.6 Score=34.28 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.2
Q ss_pred eEEEeCCCceEEEeecCCC
Q 021885 6 VVVCDNGTGYVKCGFAGEN 24 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~~ 24 (306)
.+.||+|..++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 3789999999999998654
No 70
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=81.13 E-value=25 Score=30.71 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=31.6
Q ss_pred eEEEEecCCCceEEEEeecceecccce-EEecccchhHHHHHHHHH
Q 021885 150 TGLVIDSGDGVTHVVPVVDGYSFPHLT-KRMNVAGRHITSYLVDLL 194 (306)
Q Consensus 150 tglVVDiG~~~t~v~pV~dG~~~~~~~-~~~~~GG~~l~~~l~~~l 194 (306)
...|||+|.+.|.++-+.+|.+..-.. .....|+..+.+.+.+.|
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 345999999999999999887762211 234567776776665554
No 71
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=77.44 E-value=1.7 Score=38.24 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCceEEEEeecce
Q 021885 148 LLTGLVIDSGDGVTHVVPVVDGY 170 (306)
Q Consensus 148 ~~tglVVDiG~~~t~v~pV~dG~ 170 (306)
..+++.||+|...|.|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46799999999999999999996
No 72
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=77.16 E-value=22 Score=33.63 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=43.4
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCcee-e-eehhhhHhhhhcC--CCeEEEEec
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGV-F-IQIQAVLTLYAQG--LLTGLVIDS 156 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v-~-~~~~~~ls~~~~g--~~tglVVDi 156 (306)
+..+++++.++ +..++...+..-+.+ +-.-|..+ ..+| +.+.+ . +.-.+..+.|-.. ....+|+||
T Consensus 179 ~~a~~~l~~~l-~~~Gl~~~di~~i~~-----TGyGR~~i-~~~~---~ad~iv~EItaha~GA~~L~p~~~~v~TIIDI 248 (404)
T TIGR03286 179 ESAEEAVERAL-EEAGVSLEDVEAIGT-----TGYGRFTI-GEHF---GADLIQEELTVNSKGAVYLADKQEGPATVIDI 248 (404)
T ss_pred HHHHHHHHHHH-HHcCCCccceeEEEe-----eeecHHHH-hhhc---CCCceEEEEhhHHHHHHHhcccCCCCcEEEEe
Confidence 34677887777 566665444332222 22223333 2222 22211 1 1112222333332 247899999
Q ss_pred CCCceEEEEeecceec
Q 021885 157 GDGVTHVVPVVDGYSF 172 (306)
Q Consensus 157 G~~~t~v~pV~dG~~~ 172 (306)
|.+-+.++-+-+|.+.
T Consensus 249 GGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 249 GGMDNKAISVWDGIPD 264 (404)
T ss_pred CCCceEEEEEcCCcee
Confidence 9999999888778654
No 73
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=76.83 E-value=8.7 Score=32.65 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=14.9
Q ss_pred EEEeCCCceEEEeecCCC
Q 021885 7 VVCDNGTGYVKCGFAGEN 24 (306)
Q Consensus 7 vViD~Gs~~~k~G~ag~~ 24 (306)
++||+|-.++|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 689999999999998654
No 74
>PRK13318 pantothenate kinase; Reviewed
Probab=76.16 E-value=11 Score=33.13 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.6
Q ss_pred eEEEeCCCceEEEeecCC
Q 021885 6 VVVCDNGTGYVKCGFAGE 23 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~ 23 (306)
.+.||+|..++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999999863
No 75
>PRK13324 pantothenate kinase; Reviewed
Probab=75.71 E-value=36 Score=30.16 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.5
Q ss_pred eEEEeCCCceEEEeecCC
Q 021885 6 VVVCDNGTGYVKCGFAGE 23 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~ 23 (306)
-+.||+|-.++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 478999999999998753
No 76
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=69.32 E-value=8.8 Score=33.27 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=37.3
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|=+|+| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 45666667777 467899999999999999999999999999885
No 77
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=68.38 E-value=78 Score=29.67 Aligned_cols=81 Identities=21% Similarity=0.074 Sum_probs=44.9
Q ss_pred HHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCceEE
Q 021885 84 GQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHV 163 (306)
Q Consensus 84 ~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~v 163 (306)
++.++.++ +.++.+..+-.-+ -.+-.=|+.+-..++-.. .-.-+.-.+..|.|-..... .|+|||.+-+-+
T Consensus 173 ~~~l~~~l-e~l~~~~~~I~~~-----~~TGYGR~~v~~~~~aD~--~~~Ei~ah~kgA~~f~p~~d-tIiDIGGQD~K~ 243 (396)
T COG1924 173 EKALKEAL-EELGEKLEEILGL-----GVTGYGRNLVGAALGADK--VVVEISAHAKGARYFAPDVD-TVIDIGGQDSKV 243 (396)
T ss_pred HHHHHHHH-HHcccChheeeee-----eeecccHHHhhhhhcCCc--ceeeeehhHHHHHHhCCCCc-EEEEecCcceeE
Confidence 45666666 5665553222211 122333444443443222 22333444455555443333 999999999999
Q ss_pred EEeecceecc
Q 021885 164 VPVVDGYSFP 173 (306)
Q Consensus 164 ~pV~dG~~~~ 173 (306)
+-|-||.+..
T Consensus 244 i~i~dG~v~d 253 (396)
T COG1924 244 IKLEDGKVDD 253 (396)
T ss_pred EEEeCCeeee
Confidence 9999998763
No 78
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=67.21 E-value=10 Score=33.62 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
-|.++.|-+++| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 73 ~~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 73 RDVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 355677777777 367899999999999999999999999998885
No 79
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=67.09 E-value=9.8 Score=33.62 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+++| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 76 dv~~aI~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAF------VTSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhc------ccCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 55677777777 357899999999999999999999999998874
No 80
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=66.60 E-value=10 Score=33.42 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|=+|+| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 55666667777 357899999999999999999999999998874
No 81
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=66.33 E-value=11 Score=33.23 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 55666667777 367899999999999999999999999998874
No 82
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=66.12 E-value=11 Score=33.42 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+++| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 45666667777 367899999999999999999999999998874
No 83
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=65.84 E-value=11 Score=33.37 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
-|.++.|-+|+| .++++||+|+.....+...+++|+++|-|.||=
T Consensus 73 ~~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 73 KEVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 355667777777 368899999999999999999999999998874
No 84
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=65.80 E-value=72 Score=27.90 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.4
Q ss_pred EEEeCCCceEEEeecCCC
Q 021885 7 VVCDNGTGYVKCGFAGEN 24 (306)
Q Consensus 7 vViD~Gs~~~k~G~ag~~ 24 (306)
++||+|-.++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987653
No 85
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=53 Score=32.28 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=73.0
Q ss_pred CeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCC-----eEEEEecCCCceEEE--Eeecceecc-
Q 021885 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLL-----TGLVIDSGDGVTHVV--PVVDGYSFP- 173 (306)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~-----tglVVDiG~~~t~v~--pV~dG~~~~- 173 (306)
...+++.|.+....+|+..-... .-.+..-+-.++.|.+++.++|.. .-.|-|+|.+...|. -|.+|..--
T Consensus 161 ~~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 35677888887777776655443 345666677789999999888753 347889998865543 345664332
Q ss_pred cceEEecccchhHHHHHHHHHhhc---CCccccCChHHHHHHHHHh
Q 021885 174 HLTKRMNVAGRHITSYLVDLLSRR---GYSMNRTADFETVRQIKEK 216 (306)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~~---~~~~~~~~~~~~~~~iKe~ 216 (306)
.+--....||.+++..+.+++-.+ +-.+....+...++.++|.
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~ea 285 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREA 285 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHH
Confidence 222344689999999998887542 1112233456666666553
No 86
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=65.46 E-value=11 Score=32.54 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
-|.++.|-+|+| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 73 ~dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 73 RDVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 355666667777 357899999999999999999999999998874
No 87
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=65.44 E-value=11 Score=33.35 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 45666666777 357899999999999999999999999998874
No 88
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=65.02 E-value=11 Score=33.31 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
-|.++.|-+++| ..+++||+|+.....+...+++|++++-|.||=
T Consensus 73 ~~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 73 KDVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 355667777777 357899999999999999999999999998874
No 89
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=64.68 E-value=12 Score=32.99 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 55666667777 357899999999999999999999999998874
No 90
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=64.03 E-value=12 Score=32.43 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..+++||+|+.....+.+.+++|+++|-|.||-
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 55666667776 467899999999999999999999999998884
No 91
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=63.92 E-value=12 Score=33.03 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|=+++| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 55666667777 367899999999999999999999999998874
No 92
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=63.55 E-value=13 Score=32.43 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
-|.++.|=+++| ..+++||+|+.....+...+++|+++|-|.||-
T Consensus 73 ~dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 73 RDVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 355666777777 357899999999999999999999999998885
No 93
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=61.21 E-value=15 Score=31.89 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
-|.++.|=+++| ..+++||+|+.....+...+++|+++|-+.||-
T Consensus 73 ~dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd 117 (226)
T cd08558 73 KDVIEAIKEYAF------VTSPYPVILSLENHCSLEQQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHHhc------ccCCCCeEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 355677777777 357899999999999999999999999998874
No 94
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=59.63 E-value=15 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..+++||+|+.....+...+++|+++|-|.||-
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 55666667777 357899999999999999999999999998884
No 95
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=57.47 E-value=91 Score=27.57 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=39.5
Q ss_pred eeehhhhHhhhhc-------CCCeEEEEecCCCceEEEEeecceecccceEEe---cccchhHHHHHHHHH
Q 021885 134 FIQIQAVLTLYAQ-------GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRM---NVAGRHITSYLVDLL 194 (306)
Q Consensus 134 ~~~~~~~ls~~~~-------g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~---~~GG~~l~~~l~~~l 194 (306)
++.+...+|.+++ .....+|||+|.+.|-..-|.+|++. ++... .+-...|..++.++.
T Consensus 145 ~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~--GvfEHHT~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 145 VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY--GVFEHHTGMLTPEKLEEYLERLR 213 (254)
T ss_pred eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE--EEEecccCCCCHHHHHHHHHHHH
Confidence 5667666666654 35778999999999999999999876 33222 233444444444443
No 96
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=57.34 E-value=19 Score=31.90 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCC-CHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|=+|+| ..+++||+|+..... +..++++|+++|-|.||=
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd 120 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 55666667777 367899999998888 588999999999998885
No 97
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=57.29 E-value=19 Score=31.83 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..++.||+|+.....+...+++|+++|-|.||-
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 45666667777 357899999999999999999999999998875
No 98
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=56.81 E-value=19 Score=31.93 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCC-CHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..+++||+|+..... +..++++|+++|-|.||=
T Consensus 76 dv~~~I~~~AF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAF------KTSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 55666667777 357899999988887 678999999999999885
No 99
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=56.08 E-value=13 Score=37.60 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
+.++.|=+|+| ..+++||+|+.....+...+.++++++-+.||=
T Consensus 361 ~vl~aIk~~AF------~~S~YPvIlsLE~Hc~~~qQ~~mA~~~~~ifGd 404 (746)
T KOG0169|consen 361 DVLRAIKKYAF------VTSPYPVILTLENHCSPDQQAKMAQMLKEIFGD 404 (746)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 44566666666 467999999999999999999999999888873
No 100
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=53.50 E-value=21 Score=31.59 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCC-CHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|=+|+| ..+++||+|+..... +.+.+++|+++|-|.||-
T Consensus 76 dv~~~I~~~aF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAF------KTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 55666667777 357899999998888 588999999999988875
No 101
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.04 E-value=1.5e+02 Score=26.52 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=29.4
Q ss_pred CeEEEEecCCCceEEEEeecceec---c-cceEEecccchhHHHHHHHHHh
Q 021885 149 LTGLVIDSGDGVTHVVPVVDGYSF---P-HLTKRMNVAGRHITSYLVDLLS 195 (306)
Q Consensus 149 ~tglVVDiG~~~t~v~pV~dG~~~---~-~~~~~~~~GG~~l~~~l~~~l~ 195 (306)
.-++|||+|.+.|...-|-++++. . |++. ..-..+..++.++..
T Consensus 227 ~palvVd~GngHttaalvdedRI~gv~EHHT~~---Lspekled~I~rf~~ 274 (342)
T COG4012 227 DPALVVDYGNGHTTAALVDEDRIVGVYEHHTIR---LSPEKLEDQIIRFVE 274 (342)
T ss_pred CceEEEEccCCceEEEEecCCeEEEEeeccccc---CCHHHHHHHHHHHHh
Confidence 568999999999999888888765 2 2222 222555556655544
No 102
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=51.74 E-value=2e+02 Score=26.78 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.5
Q ss_pred eEEEEecCCCceEEEEeecceecccc
Q 021885 150 TGLVIDSGDGVTHVVPVVDGYSFPHL 175 (306)
Q Consensus 150 tglVVDiG~~~t~v~pV~dG~~~~~~ 175 (306)
+-+++.+|.+.. ++.|.+|+++..+
T Consensus 175 ~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 175 NLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred CEEEEEeCCCce-eeeEECCEEEEcC
Confidence 789999999877 9999999997544
No 103
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.47 E-value=16 Score=37.07 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=26.0
Q ss_pred hhhhcCCCe--EEEEecCCCceEEEEeecceec
Q 021885 142 TLYAQGLLT--GLVIDSGDGVTHVVPVVDGYSF 172 (306)
Q Consensus 142 s~~~~g~~t--glVVDiG~~~t~v~pV~dG~~~ 172 (306)
++|-+|+.+ ++++|+|..+|.+.-+.+|.+-
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 455557777 9999999999999999988775
No 104
>PRK13326 pantothenate kinase; Reviewed
Probab=49.52 E-value=1.5e+02 Score=26.37 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.3
Q ss_pred CeEEEeCCCceEEEeecCCC
Q 021885 5 NVVVCDNGTGYVKCGFAGEN 24 (306)
Q Consensus 5 ~~vViD~Gs~~~k~G~ag~~ 24 (306)
--++||+|-.++|+|+..++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEEeCCCeEEEEEEECC
Confidence 45899999999999998764
No 105
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=48.68 E-value=34 Score=29.74 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceee
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVF 134 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~ 134 (306)
|.++.|-+|+| ..+++||+|+.....+...+++++++|-+.|| ..++
T Consensus 74 dvl~~I~~~aF------~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG-d~L~ 120 (228)
T cd08599 74 DCIKAIKENAF------TASEYPVIITLENHLSPELQAKAAQILRETLG-DKLF 120 (228)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHh-hhhc
Confidence 44555556666 35789999999988899999999999999998 3444
No 106
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=48.22 E-value=2.1e+02 Score=25.89 Aligned_cols=136 Identities=10% Similarity=-0.005 Sum_probs=0.0
Q ss_pred eEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechhhHHH
Q 021885 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQ 85 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d~l~~ 85 (306)
.+-||+||.++|+-.-.+.. ++-+.+.+........ .+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~---i~~~~~~~tg~~~~~~--------------------------------------a~~ 72 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGE---LYGYNSMRTGNNSPDS--------------------------------------AKN 72 (293)
T ss_pred EEEEEeCchhEEEEEEeCCE---EEEEEeecCCCCHHHH--------------------------------------HHH
Q ss_pred HHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCceEEEE
Q 021885 86 VWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVP 165 (306)
Q Consensus 86 ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~v~p 165 (306)
+++.++ ++++....+...+.+.-.- +.++..-.-.-.-+.-.+..+.|-.+.....|+|||.+-+.++-
T Consensus 73 ~l~~~l-~~~g~~~~~v~~~~~TGyG----------r~~~~~a~~~v~EItaha~Ga~~~~pp~v~tIIDIGGQDsK~I~ 141 (293)
T TIGR03192 73 ALQGIM-DKIGMKLEDINYVVGTGYG----------RVNVPFAHKAITEIACHARGANYMGGNAVRTILDMGGQDCKAIH 141 (293)
T ss_pred HHHHHH-HHcCCcccceEEEEEECcc----------hhhcchhhcceeeHHHHHHHHHHhcCCCCCEEEEeCCCceEEEE
Q ss_pred eecceecccceEEeccc---chhHHHHHHHH
Q 021885 166 VVDGYSFPHLTKRMNVA---GRHITSYLVDL 193 (306)
Q Consensus 166 V~dG~~~~~~~~~~~~G---G~~l~~~l~~~ 193 (306)
+.+.-.+.+-...-.++ |+.|...-+.+
T Consensus 142 ~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~L 172 (293)
T TIGR03192 142 CDEKGKVTNFLMNDKCAAGTGRGMEVISDLM 172 (293)
T ss_pred EcCCCcEeeeeecCcccccccHHHHHHHHHc
No 107
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=46.97 E-value=30 Score=25.33 Aligned_cols=50 Identities=16% Similarity=0.405 Sum_probs=34.3
Q ss_pred ecCeeechhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcC
Q 021885 73 NNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (306)
Q Consensus 73 ~~g~i~~~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~ 129 (306)
+.|++.|+..++.+++.+. +.| ++..|.-.+++. ...-|.+++++++.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 4799999999999998766 433 344444444442 2245789999988753
No 108
>PRK13320 pantothenate kinase; Reviewed
Probab=45.42 E-value=2.1e+02 Score=25.01 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=15.9
Q ss_pred eEEEeCCCceEEEeecCC
Q 021885 6 VVVCDNGTGYVKCGFAGE 23 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~ 23 (306)
-+.||+|-.++|.|+..+
T Consensus 4 ~L~iDiGNT~ik~~~~~~ 21 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG 21 (244)
T ss_pred EEEEEeCCCcEEEEEEEC
Confidence 578999999999998764
No 109
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=44.55 E-value=1.7e+02 Score=26.52 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=67.3
Q ss_pred hhHHHHHHHHhhcccCCCCCC--CeeEEecCCCCCHHHHHHHHHHhhhhcC--CceeeeehhhhHhhhhc--CCCeEEEE
Q 021885 81 EDMGQVWDHAFFSELKIDPPE--CKILLTDPPLNPAKNREKMVETMFEKYN--FAGVFIQIQAVLTLYAQ--GLLTGLVI 154 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~--~~vll~e~~~~~~~~r~~l~e~lfE~~~--v~~v~~~~~~~ls~~~~--g~~tglVV 154 (306)
+.++.+.+.++ ++-+++.+. +.|.|..+-.......+++.+.+=.+|. +..+++..++.+++++. |...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 45777888787 666777654 5677777777777777788877766652 34588889999988877 55999999
Q ss_pred ecCCCceEEEEeeccee
Q 021885 155 DSGDGVTHVVPVVDGYS 171 (306)
Q Consensus 155 DiG~~~t~v~pV~dG~~ 171 (306)
=.|.++..-.-.-||-.
T Consensus 126 iaGTgs~crl~~~DGs~ 142 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSE 142 (336)
T ss_pred EecCCceeEEECCCCCc
Confidence 99999887776667743
No 110
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=44.42 E-value=69 Score=26.50 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=18.7
Q ss_pred eeecCeeechhhHHHHHHHHhh
Q 021885 71 PVNNGIVQNWEDMGQVWDHAFF 92 (306)
Q Consensus 71 p~~~g~i~~~d~l~~ll~~~~~ 92 (306)
-+++|.|.|.+.+.+.++.++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 3789999999998888888883
No 111
>PLN02230 phosphoinositide phospholipase C 4
Probab=43.80 E-value=36 Score=34.02 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
+.++.|-+|+| ..+++||+|+.....+...+.+|+++|-+.||-
T Consensus 187 ~v~~~I~~~aF------~~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAF------AISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhcc------CCCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 45666667777 467899999999999999999999999988874
No 112
>PLN02952 phosphoinositide phospholipase C
Probab=43.78 E-value=36 Score=33.98 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..+++||+|+.....+...+++|+++|-|.||=
T Consensus 196 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAF------SSSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 55666667777 357899999999999999999999999988874
No 113
>PLN02222 phosphoinositide phospholipase C 2
Probab=42.99 E-value=35 Score=33.96 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
+.++.|-+|+| ..+++||+|+.....+...+.+|+++|-|.||=
T Consensus 176 ~v~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 176 KCLKAIRAHAF------DVSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 44566666666 467899999999999999999999999988874
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=41.50 E-value=41 Score=33.41 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
|.++.|-+|+| ..+++||+|+.....+...+++|+++|-|.||-
T Consensus 179 ~v~~~I~~~AF------~~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 179 KCLNAIKDNAF------QVSDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 45666667777 357899999999999999999999999888874
No 115
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=39.90 E-value=47 Score=30.68 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=34.6
Q ss_pred cCCCeEEEEecCCCceEEEEeecceecccceEEe-c---ccchhHHHHHHHHHh
Q 021885 146 QGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRM-N---VAGRHITSYLVDLLS 195 (306)
Q Consensus 146 ~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~-~---~GG~~l~~~l~~~l~ 195 (306)
+...+-++||+|++.|.++.|.+|.++..---.+ . ++.-.++-.+..++.
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDGiggt~g~pG~~~~G~lD~Evay~i~ 204 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDGIGGTIGFPGYLSHGALDGEVAYLIG 204 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEccccccccCCccccCCcccHHHHHHhc
Confidence 4566999999999999999999999985432222 1 223345555555554
No 116
>PLN02223 phosphoinositide phospholipase C
Probab=39.26 E-value=46 Score=32.71 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCC
Q 021885 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (306)
Q Consensus 80 ~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v 130 (306)
-+.++.|-+|+|. ..+++||+|+.....+...+.+|++++-|.||=
T Consensus 178 ~~vl~aI~~~AF~-----~s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 178 QECLDAIKEHAFT-----KCRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHHhhh-----cCCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 3566777777772 234899999999999999999999999888874
No 117
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=33.14 E-value=3.5e+02 Score=24.05 Aligned_cols=139 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred eEEEeCCCceEEEeecCCCCCCccCCceEEEeCccchhhhhcccCCceEeccccccccCCceeeceeecCeeechhhHHH
Q 021885 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQ 85 (306)
Q Consensus 6 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~d~l~~ 85 (306)
.+-||+||.++|+=.-.++.=....-.....+....... +..+.
T Consensus 3 ~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~ 46 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRIRQRDPF------------------------------------KLAED 46 (262)
T ss_pred EEEEEcCcccEEEEEEecCCCeeEEEEEEEecCCCCCHH------------------------------------HHHHH
Q ss_pred HHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcCCceeeeehhhhHhhhhcCCCeEEEEecCCCceEEEE
Q 021885 86 VWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVP 165 (306)
Q Consensus 86 ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~v~~v~~~~~~~ls~~~~g~~tglVVDiG~~~t~v~p 165 (306)
+++.++ +++++...+..-+.+.-. -+.. ......+.| +......+.........|+|+|.+-+.++-
T Consensus 47 ~l~~~~-~~~g~~~~~i~~i~~TGY--GR~~-~~a~~~vtE---------It~ha~GA~~~~p~~~tIiDIGGQD~K~I~ 113 (262)
T TIGR02261 47 AYDDLL-EEAGLAAADVAYCATTGE--GESL-AFHTGHFYS---------MTTHARGAIYLNPEARAVLDIGALHGRAIR 113 (262)
T ss_pred HHHHHH-HHcCCChhheEEEEEECC--chhh-hhhcCCeeE---------EeHHHHHHHHHCCCCCEEEEeCCCceEEEE
Q ss_pred eecceecccceEEeccc---chhHHHHHHHH
Q 021885 166 VVDGYSFPHLTKRMNVA---GRHITSYLVDL 193 (306)
Q Consensus 166 V~dG~~~~~~~~~~~~G---G~~l~~~l~~~ 193 (306)
+-+.-.+.+....-.++ |+.|......+
T Consensus 114 ~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L 144 (262)
T TIGR02261 114 MDERGKVEAYKMTSQCASGSGQFLENIARYL 144 (262)
T ss_pred EcCCCcEeeEEecCcccccccHHHHHHHHHh
No 118
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=31.01 E-value=71 Score=33.30 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=33.9
Q ss_pred hhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcC
Q 021885 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (306)
Q Consensus 81 d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~ 129 (306)
|.++.|-+.+| .++.+||+|+.-+..+++++.+|++++-+-||
T Consensus 388 dVleAIaEtAF------kTSpyPVILSfENH~s~kQQaKMa~ycr~IFG 430 (1189)
T KOG1265|consen 388 DVLEAIAETAF------KTSPYPVILSFENHCSPKQQAKMAEYCRDIFG 430 (1189)
T ss_pred HHHHHHHHhhc------cCCCCceEEeecccCCHHHHHHHHHHHHHHHH
Confidence 45666666666 47899999999988899999999998765554
No 119
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=30.30 E-value=1.8e+02 Score=20.76 Aligned_cols=47 Identities=19% Similarity=0.068 Sum_probs=30.4
Q ss_pred EEEEecCCCceEEEEe-ecceecccceEEecccchhHHHHHHHHHhhc
Q 021885 151 GLVIDSGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLSRR 197 (306)
Q Consensus 151 glVVDiG~~~t~v~pV-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (306)
-+-+|+|...+.+.-+ .+|..+........-++..+-+.+.+++.+.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 50 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKY 50 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHHh
Confidence 4789999888887777 4676664322222224566677777777664
No 120
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=30.26 E-value=1.4e+02 Score=26.81 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHhhhhcCCceeeeehhhhHhhhh-------cCCCeEEEEecCCCceEEEEeecceecc
Q 021885 120 MVETMFEKYNFAGVFIQIQAVLTLYA-------QGLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (306)
Q Consensus 120 l~e~lfE~~~v~~v~~~~~~~ls~~~-------~g~~tglVVDiG~~~t~v~pV~dG~~~~ 173 (306)
+.+.+=|.+++| +++.+++-+++++ .+..+.++|.+|.+. -..-|.+|.++.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 555666778887 7788888887763 246889999999876 577778998875
No 121
>PRK13333 pantothenate kinase; Reviewed
Probab=28.48 E-value=72 Score=27.28 Aligned_cols=28 Identities=32% Similarity=0.561 Sum_probs=19.3
Q ss_pred hhHhhhhcCCCeEEEEecCCCceEEEEeecc
Q 021885 139 AVLTLYAQGLLTGLVIDSGDGVTHVVPVVDG 169 (306)
Q Consensus 139 ~~ls~~~~g~~tglVVDiG~~~t~v~pV~dG 169 (306)
-++++++. ..++|||+|.+.| +..|.+|
T Consensus 76 R~~a~~aa--~~~lVIDaGTAiT-iDvv~~g 103 (206)
T PRK13333 76 RIAACYAI--EDGVVVDAGSAIT-VDIMSNG 103 (206)
T ss_pred HHHHhccC--CCeEEEEcCCceE-EEEEcCC
Confidence 34556654 5799999998877 5455555
No 122
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=25.28 E-value=1.8e+02 Score=26.98 Aligned_cols=22 Identities=14% Similarity=0.207 Sum_probs=18.6
Q ss_pred eeecCeeechhhHHHHHHHHhh
Q 021885 71 PVNNGIVQNWEDMGQVWDHAFF 92 (306)
Q Consensus 71 p~~~g~i~~~d~l~~ll~~~~~ 92 (306)
-+++|.|.|.+.+.+.++.++.
T Consensus 37 gi~~G~I~d~~~~~~~i~~al~ 58 (371)
T TIGR01174 37 GIKKGVINDIEAAVGSIQRAIE 58 (371)
T ss_pred CccCcEEEcHHHHHHHHHHHHH
Confidence 3689999999998888888884
No 123
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=23.62 E-value=1.2e+02 Score=23.38 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=33.2
Q ss_pred ecCeeechhhHHHHHHHHhhcccCCCCCCCeeEEecCCCCCHHHHHHHHHHhhhhcC
Q 021885 73 NNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (306)
Q Consensus 73 ~~g~i~~~d~l~~ll~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfE~~~ 129 (306)
..|++.|+..++++++.++.+.| +|..+.-..++...-.-|.++.++++.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999988773223 44444433331111244778888887654
No 124
>PRK00976 hypothetical protein; Provisional
Probab=22.81 E-value=1.3e+02 Score=27.66 Aligned_cols=31 Identities=23% Similarity=0.103 Sum_probs=26.2
Q ss_pred hhhhcCCCeEEEEecCCCceEEEEeecceecc
Q 021885 142 TLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (306)
Q Consensus 142 s~~~~g~~tglVVDiG~~~t~v~pV~dG~~~~ 173 (306)
+.+-.+..+-+|+|+|+ .|-...|-+|+++-
T Consensus 142 a~~~~~~~~fi~~diss-ntv~~~V~~gkIvg 172 (326)
T PRK00976 142 AYKLFGFENFIVSDISS-NTVTLLVKDGKIVG 172 (326)
T ss_pred HHhhcCCCcEEEEeccc-cEEEEEEECCEEEc
Confidence 33456889999999999 99999999999873
Done!