Query 021886
Match_columns 306
No_of_seqs 144 out of 204
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1971 Lysyl hydroxylase [Pos 100.0 6.8E-50 1.5E-54 389.5 11.3 259 43-301 30-312 (415)
2 KOG1971 Lysyl hydroxylase [Pos 99.6 5.4E-16 1.2E-20 152.6 3.7 110 111-231 290-415 (415)
3 smart00702 P4Hc Prolyl 4-hydro 98.8 2.9E-08 6.4E-13 85.5 9.3 122 166-295 1-135 (178)
4 PRK05467 Fe(II)-dependent oxyg 98.0 5.3E-05 1.2E-09 70.3 10.4 114 172-294 7-138 (226)
5 PF03171 2OG-FeII_Oxy: 2OG-Fe( 95.1 0.021 4.6E-07 44.5 3.0 47 249-299 2-51 (98)
6 PLN00052 prolyl 4-hydroxylase; 92.6 0.76 1.6E-05 44.8 9.2 117 165-293 53-186 (310)
7 PF13661 2OG-FeII_Oxy_4: 2OG-F 90.8 0.33 7.2E-06 36.7 3.6 42 253-294 13-66 (70)
8 PHA02813 hypothetical protein; 87.5 3.7 8.1E-05 41.1 9.3 120 166-296 5-147 (354)
9 PHA02869 C4L/C10L-like gene fa 85.2 5.4 0.00012 40.7 9.1 119 166-292 9-152 (418)
10 PF13640 2OG-FeII_Oxy_3: 2OG-F 84.3 0.63 1.4E-05 36.2 1.7 40 253-294 3-50 (100)
11 PF11265 Med25_VWA: Mediator c 56.7 18 0.00039 34.2 4.6 70 217-288 25-106 (226)
12 PF13532 2OG-FeII_Oxy_2: 2OG-F 51.8 62 0.0013 27.8 6.9 29 250-280 98-131 (194)
13 PF09864 MliC: Membrane-bound 48.3 14 0.0003 27.7 2.0 46 249-294 6-54 (72)
14 KOG3636 Uncharacterized conser 47.7 7.6 0.00016 40.7 0.7 72 64-136 107-187 (669)
15 PF05721 PhyH: Phytanoyl-CoA d 46.4 1.7E+02 0.0037 24.2 9.3 118 172-291 11-144 (211)
16 PRK13916 plasmid segregation p 36.0 16 0.00034 30.2 0.7 31 69-107 18-48 (97)
17 TIGR02408 ectoine_ThpD ectoine 35.9 3E+02 0.0066 25.8 9.3 25 167-191 29-54 (277)
18 TIGR01762 chlorin-enz chlorina 35.4 3.2E+02 0.007 26.1 9.6 21 168-188 17-37 (288)
19 TIGR02409 carnitine_bodg gamma 34.9 85 0.0019 30.6 5.7 32 262-293 185-222 (366)
20 PRK15401 alpha-ketoglutarate-d 33.2 3.7E+02 0.0081 25.1 9.3 28 162-189 14-41 (213)
21 cd00250 CAS_like Clavaminic ac 27.7 88 0.0019 28.6 4.2 67 221-292 58-130 (262)
22 TIGR01563 gp16_SPP1 phage head 27.1 75 0.0016 24.5 3.1 56 230-285 36-91 (101)
23 TIGR02410 carnitine_TMLD trime 25.8 1.4E+02 0.0031 29.2 5.5 74 208-292 126-213 (362)
24 TIGR00568 alkb DNA alkylation 22.5 1.2E+02 0.0026 27.1 3.9 31 249-281 95-130 (169)
25 PF09859 Oxygenase-NA: Oxygena 21.7 1E+02 0.0022 28.3 3.3 40 253-294 66-113 (173)
26 PF10637 Ofd1_CTDD: Oxoglutara 21.3 1.4E+02 0.003 28.8 4.3 124 167-290 32-187 (266)
No 1
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-50 Score=389.53 Aligned_cols=259 Identities=38% Similarity=0.530 Sum_probs=254.4
Q ss_pred cccccccCCCCCCCCCCCCCccccCChhHHHHhhhcCCCccCCCCHHHHHHHHHHHHHHhCCccchhhhhccHHhhhhHh
Q 021886 43 QNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKII 122 (306)
Q Consensus 43 ~~~rl~~~p~~~h~~~~y~d~~l~~~~~~~~~le~~lp~~~~~~~r~~k~~fm~~iL~~~~~~~eR~r~~~~~e~~~~I~ 122 (306)
.+.++.+.|+.+|.+++|+|++|+|+++..++||.|+|+.+|++.|+.|+|||.++|.+|++..++.++..+..|+.+|.
T Consensus 30 ni~ld~~~~~fq~l~g~~~dv~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d~l~nY~~r~~~~~~l~~~~~r~~~~ 109 (415)
T KOG1971|consen 30 NITLDHRSRIFQNLNGAYEDVVLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLDYLGNYIPREWTGCSLCCKNYRELIK 109 (415)
T ss_pred cccccCcCcccccCcCCcCCeeEecccCchhhhhhcCCCcceeeccCccHHHHHHHHhhhcchhhhhhhccccccchhhh
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccccccCcccCCCchhHHHhhhccHhhhhccccccCCceeEeecCCHHHHHHHHHHHHHhhhhhhcccCCCCC
Q 021886 123 TNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMR 202 (306)
Q Consensus 123 ~~Y~pLhpdLy~lnpe~yl~P~f~~ai~~~tee~~~~ii~EpcPdVY~FP~Ft~~FC~~LIeE~E~F~~Ws~gs~~pi~R 202 (306)
++||+|+-..|.++|+.++.|+|..+...++++.|+++++|+.|++|.||||++.||+++++|||+|++|+.+++.+|+|
T Consensus 110 s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i~~ 189 (415)
T KOG1971|consen 110 SNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVITR 189 (415)
T ss_pred hccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccc--ChHHHHHHHHHHHhchhhh---------------------hhccccCCCCCcccceEEEEEecC
Q 021886 203 PNTMNKYGAVLDDF--GLETMLDKLMETYIRPLSK---------------------VFFAEVGGSTLDSHHGFVVEYGKD 259 (306)
Q Consensus 203 PntMN~YG~VL~ei--G~e~~~~~ll~~yi~Pl~~---------------------~Lfp~~~g~~Ldsh~~FVVrY~p~ 259 (306)
||+|++||++++++ ||..+..+|.++|+.||++ .+||.++|..||+|++|+|+|..+
T Consensus 190 P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~~~ 269 (415)
T KOG1971|consen 190 PNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESSED 269 (415)
T ss_pred ChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeeccCc
Confidence 99999999999999 9999999999999999999 999999999999999999999665
Q ss_pred -CCCCCCccccCCceeeeeecCCCccCCceeeeeccccccccC
Q 021886 260 -RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNT 301 (306)
Q Consensus 260 -~d~~L~~H~DdSevTLNV~LgkdFeGGgl~F~g~~C~~hv~~ 301 (306)
.|+++++|+|++++|+|+||+++|+||.++|.+.+|++|+++
T Consensus 270 ~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~ 312 (415)
T KOG1971|consen 270 NRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT 312 (415)
T ss_pred CCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC
Confidence 999999999999999999999999999999999999999998
No 2
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.4e-16 Score=152.57 Aligned_cols=110 Identities=22% Similarity=0.483 Sum_probs=98.0
Q ss_pred hhccHHhhhhHhh-cCC--CCCc-ccccc--Cc----ccCCCchhHHHhhhccHhhhhccccccCCceeEeecCCHHHHH
Q 021886 111 VQRHRDYRQKIIT-NYQ--PLHR-ELYNL--HI----GNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCE 180 (306)
Q Consensus 111 ~~~~~e~~~~I~~-~Y~--pLhp-dLy~l--np----e~yl~P~f~~ai~~~tee~~~~ii~EpcPdVY~FP~Ft~~FC~ 180 (306)
+.|++++|+++.. .|+ ++++ ++|+| |+ ++|||++|.++.+.+ .++.++||+|||||++ ++|+
T Consensus 290 l~nq~~gG~L~~~~~~~~~h~~~~~~~EiFdn~h~p~qa~LHrg~~~~~a~~------~~~~~~~~nv~~~~~~--~~c~ 361 (415)
T KOG1971|consen 290 LSNQFEGGELLFTGKYCTKHLRTDDLWEIFDNSHDPGQAYLHRGYHKHGARA------TIVGQPCPNVYWFPIS--SLCD 361 (415)
T ss_pred ecccccCCeeEeeccccccccCCCchhhhccCcCCCccceecCcchhccccc------cCCCCCCCceeeehhH--HHHH
Confidence 7899999999988 887 7777 99998 43 999999999999986 4889999999999999 9999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCcccc------ccccChHHHHHHHHHHHhc
Q 021886 181 LLLAEVENFEKWVNEAKFRIMRPNTMNKYGAV------LDDFGLETMLDKLMETYIR 231 (306)
Q Consensus 181 ~LIeE~E~F~~Ws~gs~~pi~RPntMN~YG~V------L~eiG~e~~~~~ll~~yi~ 231 (306)
+|++||++|++|++|.+.++ +..++|++| |+++|++..|..++..||+
T Consensus 362 el~~~me~f~~Ws~g~~~D~---r~~~gye~~~trdi~m~q~~~e~~~~~~~~~~~~ 415 (415)
T KOG1971|consen 362 ELVEEMEEFGRWSGGCAEDK---RLAGGYENVPTRDIHMRQVGFERLWLKFLRTYVR 415 (415)
T ss_pred HHHHHHHHhhcccccchhhh---hhcCCcccCCchhhHHHhhhhHHHHHHHHHHhhC
Confidence 99999999999999999874 356677776 7889999999999999985
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=98.79 E-value=2.9e-08 Score=85.46 Aligned_cols=122 Identities=30% Similarity=0.428 Sum_probs=74.9
Q ss_pred CceeEee-cCCHHHHHHHHHHHHHhhhhhhcccCCCCCCCCC----CCccccccccChHHHHHHHHHHHhchhhhhhccc
Q 021886 166 PGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTM----NKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAE 240 (306)
Q Consensus 166 PdVY~FP-~Ft~~FC~~LIeE~E~F~~Ws~gs~~pi~RPntM----N~YG~VL~eiG~e~~~~~ll~~yi~Pl~~~Lfp~ 240 (306)
|+||.++ +||+++|++|+++.+..+ |........+.++.. +.....++.-.-+. +.++|....+.+++.
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~-~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~-----~~~~l~~~i~~~~~~ 74 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLG-WRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDL-----VIERIRQRLADFLGL 74 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhc-ccceeecCCCCccccCCCEeecceecCCCCCCH-----HHHHHHHHHHHHHCC
Confidence 7899997 999999999999999876 332222111111100 01122232211011 112222222233322
Q ss_pred cCCCCCcccceEEEEEecCCCCCCCccccCC--------ceeeeeecCCCccCCceeeeeccc
Q 021886 241 VGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS--------EVTLNVCLGKQFTGGELFFRGTRC 295 (306)
Q Consensus 241 ~~g~~Ldsh~~FVVrY~p~~d~~L~~H~DdS--------evTLNV~LgkdFeGGgl~F~g~~C 295 (306)
..+.........+++|.++ ..+.+|+|.+ .+|+.|-|+++++||++.|.+..+
T Consensus 75 ~~~~~~~~~~~~~~~Y~~g--~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~ 135 (178)
T smart00702 75 LRGLPLSAEDAQVARYGPG--GHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGL 135 (178)
T ss_pred CchhhccCcceEEEEECCC--CcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCC
Confidence 1111224567899999885 6899999955 799999999999999999998876
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.98 E-value=5.3e-05 Score=70.29 Aligned_cols=114 Identities=22% Similarity=0.359 Sum_probs=68.9
Q ss_pred ecCCHHHHHHHHHHHHHhhhhhhcccCCC-CCCCCCCCccccccccChHHHHHHHHHHHhc--hhhhhhccccCCCCCcc
Q 021886 172 EMLQPRFCELLLAEVENFEKWVNEAKFRI-MRPNTMNKYGAVLDDFGLETMLDKLMETYIR--PLSKVFFAEVGGSTLDS 248 (306)
Q Consensus 172 P~Ft~~FC~~LIeE~E~F~~Ws~gs~~pi-~RPntMN~YG~VL~eiG~e~~~~~ll~~yi~--Pl~~~Lfp~~~g~~Lds 248 (306)
.+||++.|+.+++.+|.- .|..|...-- ..+.--||--+..+.- +...+...+..++. |+ |-.. +-+..-
T Consensus 7 ~vLs~eec~~~~~~le~~-~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~~~L~~~~l----~~sa-~lp~~i 79 (226)
T PRK05467 7 DVLSPEEVAQIRELLDAA-EWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLILDALTRNPL----FFSA-ALPRKI 79 (226)
T ss_pred ccCCHHHHHHHHHHHHhc-CCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHHHHHhcCch----hhhh-cccccc
Confidence 479999999999999984 5765443210 0011233323333333 43444444555553 43 2111 111122
Q ss_pred cceEEEEEecCCCCCCCccccCC-------------ceeeeeecC--CCccCCceeeeecc
Q 021886 249 HHGFVVEYGKDRDVDLGFHVDDS-------------EVTLNVCLG--KQFTGGELFFRGTR 294 (306)
Q Consensus 249 h~~FVVrY~p~~d~~L~~H~DdS-------------evTLNV~Lg--kdFeGGgl~F~g~~ 294 (306)
+.-.+.+|.++ -..++|+|++ .+|+.|-|+ ++|+||+|.|....
T Consensus 80 ~~~~f~rY~~G--~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~ 138 (226)
T PRK05467 80 HPPLFNRYEGG--MSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY 138 (226)
T ss_pred ccceEEEECCC--CccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC
Confidence 34457899877 6889999975 678999998 47999999998643
No 5
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=95.06 E-value=0.021 Score=44.45 Aligned_cols=47 Identities=23% Similarity=0.172 Sum_probs=36.5
Q ss_pred cceEEEEEe-cCCCCCCCccccC--CceeeeeecCCCccCCceeeeeccccccc
Q 021886 249 HHGFVVEYG-KDRDVDLGFHVDD--SEVTLNVCLGKQFTGGELFFRGTRCEKHV 299 (306)
Q Consensus 249 h~~FVVrY~-p~~d~~L~~H~Dd--SevTLNV~LgkdFeGGgl~F~g~~C~~hv 299 (306)
++..+.+|. +++...+++|+|. +.+||++. .++|||+|....+...|
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~~~~~Til~~----~~~~gL~~~~~~~~~~v 51 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDEDGLLTILFQ----DEVGGLQVRDDGEWVDV 51 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES--SSEEEEEE----TSTS-EEEEETTEEEE-
T ss_pred CEEEEEECCCcccCCceeCCCcCCCCeEEEEec----ccchheeccccccccCc
Confidence 456789999 7789999999999 99999998 78999999987544433
No 6
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=92.58 E-value=0.76 Score=44.80 Aligned_cols=117 Identities=19% Similarity=0.355 Sum_probs=65.0
Q ss_pred CCceeEee-cCCHHHHHHHHHHHHH-hhhhhh---cccCCCCCCCCCCCccccccccChHHHHHHHHHHHhchhhhhhcc
Q 021886 165 SPGVFTFE-MLQPRFCELLLAEVEN-FEKWVN---EAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFA 239 (306)
Q Consensus 165 cPdVY~FP-~Ft~~FC~~LIeE~E~-F~~Ws~---gs~~pi~RPntMN~YG~VL~eiG~e~~~~~ll~~yi~Pl~~~Lfp 239 (306)
-|.||.++ +||++.|+.||+-.+. +..+.- +++.... ...-..+++.|+.-. +.....+ ++.|+-++ ..|
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~-s~~RTS~~~~l~~~~-dpvv~~I-~~Ria~~t--~lp 127 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVM-SEVRTSSGMFLDKRQ-DPVVSRI-EERIAAWT--FLP 127 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcccc-CCCEEecceeecCCC-CHHHHHH-HHHHHHHh--CCC
Confidence 58999886 8999999999988765 222110 0000000 000112344443321 2222222 22222222 122
Q ss_pred ccCCCCCcccceEEEEEecCCCCCCCcccc------------CCceeeeeecCCCccCCceeeeec
Q 021886 240 EVGGSTLDSHHGFVVEYGKDRDVDLGFHVD------------DSEVTLNVCLGKQFTGGELFFRGT 293 (306)
Q Consensus 240 ~~~g~~Ldsh~~FVVrY~p~~d~~L~~H~D------------dSevTLNV~LgkdFeGGgl~F~g~ 293 (306)
-..+ -..-|++|.+++ ...+|+| +.-.|+=|=|+...+||++.|-..
T Consensus 128 ~~~~-----E~lQVlrY~~Gq--~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~ 186 (310)
T PLN00052 128 EENA-----ENIQILRYEHGQ--KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNA 186 (310)
T ss_pred cccC-----cceEEEecCCCC--CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCc
Confidence 1111 134699999885 4677877 235777788899899999999875
No 7
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=90.76 E-value=0.33 Score=36.72 Aligned_cols=42 Identities=38% Similarity=0.593 Sum_probs=33.5
Q ss_pred EEEEecCCCCCCCccccCCc--------eeeeeecC----CCccCCceeeeecc
Q 021886 253 VVEYGKDRDVDLGFHVDDSE--------VTLNVCLG----KQFTGGELFFRGTR 294 (306)
Q Consensus 253 VVrY~p~~d~~L~~H~DdSe--------vTLNV~Lg----kdFeGGgl~F~g~~ 294 (306)
+-.|+......+.+|+|+.. +|+-|-|+ .+|.||.+.|....
T Consensus 13 ~~~~~~~~g~~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 13 FRFYRYRRGDFFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred eeEEEcCCCCEeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 33466677889999999655 78889998 78999999997654
No 8
>PHA02813 hypothetical protein; Provisional
Probab=87.54 E-value=3.7 Score=41.08 Aligned_cols=120 Identities=11% Similarity=0.176 Sum_probs=63.2
Q ss_pred CceeEeecCCHHHHHHH----HHHHHHh-hhhhhcccCCC------CCCCCCCCccccccccChHHHHHHHHHHHhchhh
Q 021886 166 PGVFTFEMLQPRFCELL----LAEVENF-EKWVNEAKFRI------MRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLS 234 (306)
Q Consensus 166 PdVY~FP~Ft~~FC~~L----IeE~E~F-~~Ws~gs~~pi------~RPntMN~YG~VL~eiG~e~~~~~ll~~yi~Pl~ 234 (306)
.|+-+.-+|+...-..+ +.+++-- -.|+.+.-++- ..++.-|+=-+++++. +..|..+..
T Consensus 5 ~~~l~~~~F~~~~f~~~k~~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~--~~L~erIr~------- 75 (354)
T PHA02813 5 DGIIKVKTFNDDYFNNVKKIIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL--DDIFKVIRK------- 75 (354)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHHhccccCccccceeccccCceEEccccccceEEEEcCH--HHHHHHHHH-------
Confidence 36677788888844444 4444400 13655333320 0111111112334444 555555433
Q ss_pred hhhccccCCC------CCcccceEEEEEecCC--CCCCCccc----cCCceeeeeecCCCccCCceeeeecccc
Q 021886 235 KVFFAEVGGS------TLDSHHGFVVEYGKDR--DVDLGFHV----DDSEVTLNVCLGKQFTGGELFFRGTRCE 296 (306)
Q Consensus 235 ~~Lfp~~~g~------~Ldsh~~FVVrY~p~~--d~~L~~H~----DdSevTLNV~LgkdFeGGgl~F~g~~C~ 296 (306)
.|+.+..|. .+..+..| ++|.++. +.+-.+++ +.|.+||=+=|++.++||++.|.--.++
T Consensus 76 -~Lp~~l~~~~lv~~V~vnerirf-yrY~kGq~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~~~t 147 (354)
T PHA02813 76 -KLLLSFEFPQKISDIILDNTITL-IKYEKGDFFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIKDNT 147 (354)
T ss_pred -hhHHHhcCCccceeEEEcceEEE-EEECCCcccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcCCCc
Confidence 233333232 23445444 5788776 33333332 3477889999999999999999865444
No 9
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=85.17 E-value=5.4 Score=40.70 Aligned_cols=119 Identities=17% Similarity=0.106 Sum_probs=67.0
Q ss_pred CceeEeecCCHHHHHH----HHHHHH----Hhh--hhhhcccCCCCCCCCCCCcccc------ccccChHHHHHHHHHHH
Q 021886 166 PGVFTFEMLQPRFCEL----LLAEVE----NFE--KWVNEAKFRIMRPNTMNKYGAV------LDDFGLETMLDKLMETY 229 (306)
Q Consensus 166 PdVY~FP~Ft~~FC~~----LIeE~E----~F~--~Ws~gs~~pi~RPntMN~YG~V------L~eiG~e~~~~~ll~~y 229 (306)
.++-..-+|++..-.. |+++++ ++- .|+.+.-++ ..++++++ -.|+=++..+..-+-+-
T Consensus 9 ~~~l~vh~Fsd~~f~~~K~~~~~~i~~~~~n~~~~~~~~s~i~~-----~~~g~e~~~~~~~ksKqii~e~~La~~L~er 83 (418)
T PHA02869 9 NNQLAVHRFTETRFTSFKKELLVNLGISDLNDIKNICEDSKIFF-----PEKRTELLSIKDRKSKQIVFENSLNDDLLKK 83 (418)
T ss_pred CCeEEEEEecHHHHHHHHHHHHHHhccccccccccccccceeec-----cccCceeEeeccccceeEEechHHHHHHHHH
Confidence 4677888999984444 444443 222 465544443 23344443 23455554333333333
Q ss_pred hchhhhhhcccc-CCCCCcccceEEEEEecCCCCCCCccccC--------CceeeeeecCCCccCCceeeee
Q 021886 230 IRPLSKVFFAEV-GGSTLDSHHGFVVEYGKDRDVDLGFHVDD--------SEVTLNVCLGKQFTGGELFFRG 292 (306)
Q Consensus 230 i~Pl~~~Lfp~~-~g~~Ldsh~~FVVrY~p~~d~~L~~H~Dd--------SevTLNV~LgkdFeGGgl~F~g 292 (306)
|+++.-.-|-++ .--.+..+..| ++|.++. .+.+|.|. |.+||=+=|++.++||++.|.-
T Consensus 84 lr~lLp~~lk~~v~~V~lnerirf-yrY~kGq--~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~ 152 (418)
T PHA02869 84 LHALIYDELSTVVDSVTVENTVTL-IMYEKGD--YFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYI 152 (418)
T ss_pred HHHhhhHHhhCccceEEEcceEEE-EEECCCC--cccccccCceecCCCEEEEEEEEEEeccCCCCceEEEe
Confidence 333322222221 11133445444 5787664 45577776 6789999999999999999987
No 10
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=84.26 E-value=0.63 Score=36.16 Aligned_cols=40 Identities=35% Similarity=0.510 Sum_probs=27.8
Q ss_pred EEEEecCCCCCCCccccC-----CceeeeeecC-CC--ccCCceeeeecc
Q 021886 253 VVEYGKDRDVDLGFHVDD-----SEVTLNVCLG-KQ--FTGGELFFRGTR 294 (306)
Q Consensus 253 VVrY~p~~d~~L~~H~Dd-----SevTLNV~Lg-kd--FeGGgl~F~g~~ 294 (306)
+.+|.+ ...+.+|+|. ..+|+-+-|+ .+ ++||++.|....
T Consensus 3 ~~~y~~--G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~ 50 (100)
T PF13640_consen 3 LNRYPP--GGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK 50 (100)
T ss_dssp EEEEET--TEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS
T ss_pred EEEECc--CCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc
Confidence 456643 4588899998 5677777787 44 799999999763
No 11
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=56.72 E-value=18 Score=34.15 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHhchhhhhhcccc------CCCCCcccceEEEEEecCCCCCCCccccCCceeeeeec------CCCcc
Q 021886 217 GLETMLDKLMETYIRPLSKVFFAEV------GGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCL------GKQFT 284 (306)
Q Consensus 217 G~e~~~~~ll~~yi~Pl~~~Lfp~~------~g~~Ldsh~~FVVrY~p~~d~~L~~H~DdSevTLNV~L------gkdFe 284 (306)
.+-.+|..|..+||-|+.+.+-.+. ++...-+..+.||-.. -|..-.+=.+-+.+|-++-. .-+|.
T Consensus 25 algpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t--~d~~~~~~v~~~g~T~~~~~fl~~L~~I~f~ 102 (226)
T PF11265_consen 25 ALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNT--ADCYPEPIVQRSGPTSSPQKFLQWLDAIQFS 102 (226)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEec--cCCCcccceeccCCcCCHHHHHHHHHccCcC
Confidence 3558999999999999999998542 1111124566666553 34455556667778877765 45999
Q ss_pred CCce
Q 021886 285 GGEL 288 (306)
Q Consensus 285 GGgl 288 (306)
|||-
T Consensus 103 GGG~ 106 (226)
T PF11265_consen 103 GGGF 106 (226)
T ss_pred CCCc
Confidence 9984
No 12
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=51.85 E-value=62 Score=27.84 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=18.0
Q ss_pred ceEEEEEecCCCCCCCccccCCce-----eeeeecC
Q 021886 250 HGFVVEYGKDRDVDLGFHVDDSEV-----TLNVCLG 280 (306)
Q Consensus 250 ~~FVVrY~p~~d~~L~~H~DdSev-----TLNV~Lg 280 (306)
.+.+-.|.++. .+++|.|+.++ -+.|+||
T Consensus 98 ~~liN~Y~~g~--~i~~H~D~~~~~~~~~I~slSLG 131 (194)
T PF13532_consen 98 QCLINYYRDGS--GIGPHSDDEEYGFGPPIASLSLG 131 (194)
T ss_dssp EEEEEEESSTT---EEEE---TTC-CCSEEEEEEEE
T ss_pred EEEEEecCCCC--CcCCCCCcccccCCCcEEEEEEc
Confidence 56677888865 99999998855 5566664
No 13
>PF09864 MliC: Membrane-bound lysozyme-inhibitor of c-type lysozyme; InterPro: IPR018660 This entry contains proteins that represent a novel family of bacterial lysozyme inhibitors with widespread homologues in Gram-negative bacteria, that may function as colonization or virulence factors in bacteria interacting with an animal host []. ; PDB: 3OE3_F 2F09_A 3F6Z_D.
Probab=48.34 E-value=14 Score=27.75 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=37.2
Q ss_pred cceEEEEEecCCCCCCCccccCCceeeeeec---CCCccCCceeeeecc
Q 021886 249 HHGFVVEYGKDRDVDLGFHVDDSEVTLNVCL---GKQFTGGELFFRGTR 294 (306)
Q Consensus 249 h~~FVVrY~p~~d~~L~~H~DdSevTLNV~L---gkdFeGGgl~F~g~~ 294 (306)
-..|.|+|..+.+.....-+++.+++|.... |..|++|++.|..-.
T Consensus 6 ~~~i~v~~~~~~~~~a~l~~~~~~~~L~~~~SaSGarY~~~~~~~w~kG 54 (72)
T PF09864_consen 6 GQRISVTYINDDDPSAVLRYDDQEYTLPQAPSASGARYSNGGYEFWTKG 54 (72)
T ss_dssp SCEEEEEEEECTTEEEEEECCTEEEEEEEECTSSSEEEECCTEEEEEET
T ss_pred CCEEEEEEcCCCCcEEEEEECCEEEEEEEeecCCCCcEeCCCEEEEEEC
Confidence 3568999999888667777788999999888 568999999998543
No 14
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=47.74 E-value=7.6 Score=40.68 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=59.2
Q ss_pred cccCChhHHHHhhhcCCCccCCCCHHHHHHHHHHHHHHhCCccchhhhhccHHhhhhHhh------cC---CCCCccccc
Q 021886 64 QLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIIT------NY---QPLHRELYN 134 (306)
Q Consensus 64 ~l~~~~~~~~~le~~lp~~~~~~~r~~k~~fm~~iL~~~~~~~eR~r~~~~~e~~~~I~~------~Y---~pLhpdLy~ 134 (306)
.++|.+++ +-++--+|--.|++||-.--...-+|-.+|+|..-|.|++--+-||-+|.= +| .+.-||+|+
T Consensus 107 n~~Y~~d~-gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~ 185 (669)
T KOG3636|consen 107 NMDYIKDI-GWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYT 185 (669)
T ss_pred CCcccccc-cHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHH
Confidence 46777764 556667788899999999999999999999999999999999999987753 12 167899999
Q ss_pred cC
Q 021886 135 LH 136 (306)
Q Consensus 135 ln 136 (306)
+|
T Consensus 186 ln 187 (669)
T KOG3636|consen 186 LN 187 (669)
T ss_pred HH
Confidence 85
No 15
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=46.37 E-value=1.7e+02 Score=24.24 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=53.8
Q ss_pred ecCCHHHHHHHHHHHHHh--hhhhhcccCCCCCCCC-CCCccccccccChHHHHHHHHHH-HhchhhhhhccccCCCCCc
Q 021886 172 EMLQPRFCELLLAEVENF--EKWVNEAKFRIMRPNT-MNKYGAVLDDFGLETMLDKLMET-YIRPLSKVFFAEVGGSTLD 247 (306)
Q Consensus 172 P~Ft~~FC~~LIeE~E~F--~~Ws~gs~~pi~RPnt-MN~YG~VL~eiG~e~~~~~ll~~-yi~Pl~~~Lfp~~~g~~Ld 247 (306)
.+|+++-|+.|.++++.. ..+..+.+........ ...+...+ .--...+..++.. .+..+.+.++..-......
T Consensus 11 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 88 (211)
T PF05721_consen 11 NVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFFGDYTEQL--AKSPNFYDLFLHPPRILDLVRALLGSDVFVQNW 88 (211)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCCCTCCCCG--CCCHHHHHHHHTHHHHHHHHHHHHTSSEEEE--
T ss_pred CcCCHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccc--ccchhhHHHHhhHHHHHHHHHHhhCCcchhhhh
Confidence 489999999999999986 2222222211100001 11111112 0112455666666 6777777776421100000
Q ss_pred ccceEEEEEec-CCCCC-CCccccC---------CceeeeeecCC-CccCCceeee
Q 021886 248 SHHGFVVEYGK-DRDVD-LGFHVDD---------SEVTLNVCLGK-QFTGGELFFR 291 (306)
Q Consensus 248 sh~~FVVrY~p-~~d~~-L~~H~Dd---------SevTLNV~Lgk-dFeGGgl~F~ 291 (306)
.+..+..-+.+ ..... ..+|.|. ..+|+-|+|.. .=+.|++.+.
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~~~~~G~~~v~ 144 (211)
T PF05721_consen 89 LQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDITPENGPLEVV 144 (211)
T ss_dssp EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-BBTTCTCEEEE
T ss_pred hHHHHHhhhhccccCCCCCCCCCCCcccccCCccceEEEEEeeccCCcccCceEee
Confidence 11112002233 22233 4788772 34577888854 3345666654
No 16
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=36.00 E-value=16 Score=30.24 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=25.0
Q ss_pred hhHHHHhhhcCCCccCCCCHHHHHHHHHHHHHHhCCccc
Q 021886 69 PSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGE 107 (306)
Q Consensus 69 ~~~~~~le~~lp~~~~~~~r~~k~~fm~~iL~~~~~~~e 107 (306)
|.+|.-|| ++||-.|-.|.|++|++|+.++-
T Consensus 18 ~~iF~FL~--------~~P~GT~~~~iR~~L~rYI~~~G 48 (97)
T PRK13916 18 PQIFDFLE--------NVPRGTKTAHIREALRRYIEEIG 48 (97)
T ss_pred HHHHHHHH--------HCCCCCccHHHHHHHHHHHHhcC
Confidence 56777776 57888899999999999987543
No 17
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=35.87 E-value=3e+02 Score=25.78 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.8
Q ss_pred ceeEe-ecCCHHHHHHHHHHHHHhhh
Q 021886 167 GVFTF-EMLQPRFCELLLAEVENFEK 191 (306)
Q Consensus 167 dVY~F-P~Ft~~FC~~LIeE~E~F~~ 191 (306)
|.... .+|+++.|+.|.++++....
T Consensus 29 Gyvvl~~vls~eev~~lr~~i~~~~~ 54 (277)
T TIGR02408 29 GFLLLENLFSDDEVAALLAEVERMTR 54 (277)
T ss_pred CEEECcccCCHHHHHHHHHHHHHHHh
Confidence 44444 68999999999999998753
No 18
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=35.45 E-value=3.2e+02 Score=26.10 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=16.7
Q ss_pred eeEeecCCHHHHHHHHHHHHH
Q 021886 168 VFTFEMLQPRFCELLLAEVEN 188 (306)
Q Consensus 168 VY~FP~Ft~~FC~~LIeE~E~ 188 (306)
|..-.+|+++..+.|.++++.
T Consensus 17 v~~~~~~s~eei~~L~~~~~~ 37 (288)
T TIGR01762 17 IGPFTLYSPEEMKETWKRIRL 37 (288)
T ss_pred EeCcCCCCHHHHHHHHHHHHH
Confidence 445568999999999998863
No 19
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=34.95 E-value=85 Score=30.64 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=24.0
Q ss_pred CCCCccccCC------ceeeeeecCCCccCCceeeeec
Q 021886 262 VDLGFHVDDS------EVTLNVCLGKQFTGGELFFRGT 293 (306)
Q Consensus 262 ~~L~~H~DdS------evTLNV~LgkdFeGGgl~F~g~ 293 (306)
..|.+|+|.+ .+++=-|+...=+||+..|...
T Consensus 185 ~~l~~HtD~~y~~~pP~~~~L~c~~~~~~GG~T~~~d~ 222 (366)
T TIGR02409 185 GGLPFHTDNPYRDHPPGLQLLHCLESTVEGGDSLFVDG 222 (366)
T ss_pred ccccccccCCccCCCCceeeeeecccCCCCcceeeeeH
Confidence 4688999976 3455567766678999999863
No 20
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=33.24 E-value=3.7e+02 Score=25.10 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.9
Q ss_pred cccCCceeEeecCCHHHHHHHHHHHHHh
Q 021886 162 SEPSPGVFTFEMLQPRFCELLLAEVENF 189 (306)
Q Consensus 162 ~EpcPdVY~FP~Ft~~FC~~LIeE~E~F 189 (306)
++..||++.+|=|..+.+++|+++++.-
T Consensus 14 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 41 (213)
T PRK15401 14 EPLAPGAVLLRGFALAAAEALLAAIEAV 41 (213)
T ss_pred eecCCCcEEeCCCCHHHHHHHHHHHHHH
Confidence 4457999999999999999999999983
No 21
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=27.65 E-value=88 Score=28.59 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHHHHHHHHhchhhhhhccccCCCCCcccceEEEEEecCCCCCCCccccCC------ceeeeeecCCCccCCceeeee
Q 021886 221 MLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS------EVTLNVCLGKQFTGGELFFRG 292 (306)
Q Consensus 221 ~~~~ll~~yi~Pl~~~Lfp~~~g~~Ldsh~~FVVrY~p~~d~~L~~H~DdS------evTLNV~LgkdFeGGgl~F~g 292 (306)
....+.+.+ .++....|+++..-.-+.. .-...| ....|.+|+|.+ .+++=-|+..+-+||...|..
T Consensus 58 ~~~~~~~~~-g~~~~~~~~~~~~v~~~~~-~~~~~~---t~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 58 ALLGLAERI-GFIRGTLYGDVVPVPGKEN-AQNGAY---TNTLLPLHTDLAYHEYRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred HHHHHHHHh-cccccccCCCeEEeccCCC-cccccc---ccCCcCccccCCCCCCCCceEEEEEeccCCCCCcceeee
Confidence 344555544 4666666765422110110 112223 457888999974 777778887777899999987
No 22
>TIGR01563 gp16_SPP1 phage head-tail adaptor, putative, SPP1 family. This family describes a small protein of about 100 amino acids found in bacteriophage and in bacterial prophage regions. Examples include gp9 of phage HK022 and gp16 of phage SPP1. This minor structural protein is suggested to be a head-tail adaptor protein (although the source of this annotation was not traced during construction of this model).
Probab=27.10 E-value=75 Score=24.45 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=34.7
Q ss_pred hchhhhhhccccCCCCCcccceEEEEEecCCCCCCCccccCCceeeeeecCCCccC
Q 021886 230 IRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTG 285 (306)
Q Consensus 230 i~Pl~~~Lfp~~~g~~Ldsh~~FVVrY~p~~d~~L~~H~DdSevTLNV~LgkdFeG 285 (306)
+.|++..-|-.-.+...+.-+-|.|+|.++=+...+..+++-.+.|.+.+..+..+
T Consensus 36 v~~~~~~e~~~a~~~~~~~t~~~~iR~~~~i~~~~ri~~~g~~Y~I~~~~d~~~~~ 91 (101)
T TIGR01563 36 VKPMSGQEFYRAGQEGVEITHVILIRYRKDVTNKMRVIYDGRIYTIGAVIDPSRTR 91 (101)
T ss_pred eeecCcceeeecccccCceEEEEEEeccCCCChhhEEEECCEEEEEEeccCcccCc
Confidence 34444333322223333555779999999988888888888877775444444433
No 23
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=25.84 E-value=1.4e+02 Score=29.20 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=42.8
Q ss_pred Ccccc-ccccChH-HHHHHHHHHHhchhhhhhccccCCCCCcccceEEEEEecCC------CCCCCccccCC------ce
Q 021886 208 KYGAV-LDDFGLE-TMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDR------DVDLGFHVDDS------EV 273 (306)
Q Consensus 208 ~YG~V-L~eiG~e-~~~~~ll~~yi~Pl~~~Lfp~~~g~~Ldsh~~FVVrY~p~~------d~~L~~H~DdS------ev 273 (306)
+||+| +..+..+ .....|.+ -+.|+....| | .-|+|+.+++. ...|.+|+|.+ .+
T Consensus 126 ~~G~v~~~g~~~~~~~~~~~a~-riG~~r~t~~----g------~~~~v~~~~~~~~~ayt~~~l~~HtD~~y~~~pp~~ 194 (362)
T TIGR02410 126 KYGFTFVDNVPVTPEATEKLCE-RISIIRPTHY----G------GFWDFTSDLSKNDTAYTSLAIDMHTDGTYWDETPGL 194 (362)
T ss_pred hhCEEEEcCCCCCHHHHHHHHH-HhccceecCC----C------CeEEEEecCCCcccccccCCccccccCCCCCCCCcc
Confidence 36654 5555544 23344444 3455543333 2 11345444432 24788999974 56
Q ss_pred eeeeecCCCccCCceeeee
Q 021886 274 TLNVCLGKQFTGGELFFRG 292 (306)
Q Consensus 274 TLNV~LgkdFeGGgl~F~g 292 (306)
++=-|+-..=+||+..|..
T Consensus 195 ~~L~c~~~~~~GG~t~~~d 213 (362)
T TIGR02410 195 QLFHCLTHDGTGGETVLVD 213 (362)
T ss_pred eeEeeeecCCCCCceeeee
Confidence 6666776666999999987
No 24
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=22.54 E-value=1.2e+02 Score=27.10 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=23.7
Q ss_pred cceEEEEEecCCCCCCCccccCCcee-----eeeecCC
Q 021886 249 HHGFVVEYGKDRDVDLGFHVDDSEVT-----LNVCLGK 281 (306)
Q Consensus 249 h~~FVVrY~p~~d~~L~~H~DdSevT-----LNV~Lgk 281 (306)
..+.|-.|.++ ..+++|.|++|.. +.|+||.
T Consensus 95 n~~LvN~Y~~G--d~mg~H~D~~e~~~~~pI~SvSLG~ 130 (169)
T TIGR00568 95 DACLVNRYAPG--ATLSLHQDRDEPDLRAPLLSVSLGL 130 (169)
T ss_pred CEEEEEeecCC--CccccccccccccCCCCEEEEeCCC
Confidence 46678889888 5899999987764 5666664
No 25
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=21.71 E-value=1e+02 Score=28.28 Aligned_cols=40 Identities=33% Similarity=0.630 Sum_probs=25.2
Q ss_pred EEEEecCCCCCCCcccc---CCceeeeeec-----CCCccCCceeeeecc
Q 021886 253 VVEYGKDRDVDLGFHVD---DSEVTLNVCL-----GKQFTGGELFFRGTR 294 (306)
Q Consensus 253 VVrY~p~~d~~L~~H~D---dSevTLNV~L-----gkdFeGGgl~F~g~~ 294 (306)
..+|.++. ..+.|-| +--+.|.|.+ |+||+||+.-....+
T Consensus 66 llrY~~gd--yn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQr 113 (173)
T PF09859_consen 66 LLRYGPGD--YNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQR 113 (173)
T ss_pred hheeCCCC--ccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEec
Confidence 66776654 3444544 4445555554 679999998776544
No 26
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=21.26 E-value=1.4e+02 Score=28.79 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=48.7
Q ss_pred ceeEeecCCHHHHHHHHHHHHHhhhh-----hhccc----CCCCCCCCCCCccccccc----------cChHHH----HH
Q 021886 167 GVFTFEMLQPRFCELLLAEVENFEKW-----VNEAK----FRIMRPNTMNKYGAVLDD----------FGLETM----LD 223 (306)
Q Consensus 167 dVY~FP~Ft~~FC~~LIeE~E~F~~W-----s~gs~----~pi~RPntMN~YG~VL~e----------iG~e~~----~~ 223 (306)
-|----+|.+++++.|.+.++.-+.- ..... -.+.+|=+..+|-.+-.. .+++.. +.
T Consensus 32 ~i~L~~FL~~~~~~~L~~~l~~~e~~~~~~p~~~~~~~~~W~~~gPphK~rY~~~~~~~~~~~~~~~~~pl~e~~~~~l~ 111 (266)
T PF10637_consen 32 EIQLENFLKPEKAEQLKEALESQEIEDLSLPQSSKEVEKPWKVAGPPHKRRYLYLDPKSEASINSDNKSPLPELPPFLLR 111 (266)
T ss_dssp EEEESS-B-HHHHHHHHHHHHHHHHH-S----SGGG--TT-EE-B-TTTEE-EEE-SSSHHHHHHHH---------SHHH
T ss_pred eEeHHHhcCHHHHHHHHHHHHhhccccccCCCcccccCCCceECCCChhhheeEeCCcccccccccccccccchhHHHHH
Confidence 45556789999999999988754331 00000 112335556666554222 122221 11
Q ss_pred HHHHHHhchhhhhhccccCCCCCcccceEEEEEecCCCCCCCcccc--CCceeeeeecCC-------CccCCceee
Q 021886 224 KLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVD--DSEVTLNVCLGK-------QFTGGELFF 290 (306)
Q Consensus 224 ~ll~~yi~Pl~~~Lfp~~~g~~Ldsh~~FVVrY~p~~d~~L~~H~D--dSevTLNV~Lgk-------dFeGGgl~F 290 (306)
.+..-+-+.--.++.-.+.|-.+-++...+=|++|+.|--|.-..| +...-+++||+. ++-|-.||-
T Consensus 112 ~l~~lf~S~aF~~~L~~~TgL~l~~~~~~~RRfr~G~dYTLa~~~~~~~~~Ld~~L~ltp~~~W~~~e~GG~e~Ym 187 (266)
T PF10637_consen 112 ELMDLFKSEAFFKWLSNLTGLDLTSCQIEARRFRPGLDYTLATDEDEEEPRLDVTLCLTPSKGWESGEVGGYECYM 187 (266)
T ss_dssp HHHHHHHSHHHHHHHHHHHSEEE-EEEEEEEEE-TTT-EE--B---EEEEEEEEEEEE---S-TTTTTT---EEEE
T ss_pred HHHHHcCCHHHHHHHHHHHCCCCccCceEEEEccCCCCeEEecCCCCCceEEEEEEEecCCCCCCCCccccEEEEE
Confidence 1111111111111111222333345667778889998888888877 444444445531 455556665
Done!