BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021888
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
           Regulatory Factor 1(150-358)
          Length = 216

 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 147 EYIDVVNYNTAGSSER--LIIDIDFRSYFEIARAVDSYDRILKSLPVVYVGSLIRLKQFL 204
           ++ DVV+   AG  E   L++D +   +F+  R + S + +   LPV +    I+ +   
Sbjct: 69  QHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSR 128

Query: 205 QVMVDAA 211
           + + +AA
Sbjct: 129 EALAEAA 135


>pdb|1R6Y|A Chain A, Crystal Structure Of Ygin From Escherichia Coli
          Length = 115

 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 207 MVDAARSSLSQNSMP-----LPPWRSLAYLQAKWQSPHQRDFN 244
           MVD A     Q+  P     +  W S+A+L+A  Q+PH + ++
Sbjct: 43  MVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYS 85


>pdb|1TUV|A Chain A, Crystal Structure Of Ygin In Complex With Menadione
          Length = 114

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 207 MVDAARSSLSQNSMP-----LPPWRSLAYLQAKWQSPHQRDFN 244
           MVD A     Q+  P     +  W S+A+L+A  Q+PH + ++
Sbjct: 43  MVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYS 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,348,528
Number of Sequences: 62578
Number of extensions: 305213
Number of successful extensions: 611
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 5
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)