BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021888
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0RZV0|THII_FINM2 Probable tRNA sulfurtransferase OS=Finegoldia magna (strain ATCC
29328) GN=thiI PE=3 SV=1
Length = 391
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 56 SDSGFSDLAHLADKISFYKRSVPQYEMDLTSVVHSLILSIKETDLHAVKSDQCNASCIRF 115
S GF + LA+++S+Y ++ Y ++L V ++ + KE + + RF
Sbjct: 218 SQRGFEKVKQLAEEVSYYTGNINFYSVNLLPVYKAITKNCKERMMTIISR--------RF 269
Query: 116 VLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSYFEI 175
++ R++ + + G+V + + V+N T+ R +I D EI
Sbjct: 270 MMRIAERIANENKIDALITGESLGQVASQTIQGVSVINEVTSLPILRPLIASDKTEIIEI 329
Query: 176 ARAVDSYD 183
AR + +Y+
Sbjct: 330 AREIGTYE 337
>sp|P37508|YYAP_BACSU Uncharacterized protein YyaP OS=Bacillus subtilis (strain 168)
GN=yyaP PE=1 SV=1
Length = 188
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 32 DLALMVSDFLENGSAGTDSLCSSDSDSGFSDLAHLADKISFYKRSV------------PQ 79
DLA+ + F+E G G C D D GF+D + D I + ++S P
Sbjct: 13 DLAVTLDGFIE-GKNGEVDWCIMDPDMGFTDFLNQIDTILYGRKSFDLWGQYIPKNEDPD 71
Query: 80 YEMDLTSVVHS 90
E +L +VHS
Sbjct: 72 TEKELWKLVHS 82
>sp|Q06680|CND3_YEAST Condensin complex subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YCG1 PE=1 SV=2
Length = 1035
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 228 LAYLQAKWQSPHQRDFNPDEQNITTTYSLDHKQCRGHLKRLQSSLHSEVEAERFLNPINS 287
L Q + Q+ H + + +E+N T +L + +Q+ +EV LN IN
Sbjct: 182 LTKFQDEEQTEHLTELSDNEENFEATRTL--------VASIQNDPSAEVRRAAMLNLIND 233
Query: 288 DNTRWLKLERRRHFSL 303
+NTR LER R ++
Sbjct: 234 NNTRPYILERARDVNI 249
>sp|Q7A0W5|ARLS_STAAW Signal transduction histidine-protein kinase ArlS OS=Staphylococcus
aureus (strain MW2) GN=arlS PE=3 SV=1
Length = 451
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 PGGDHEYIDVVNYNTAGSSERLIID-----IDFRSYFEIARAVDSYDRILKSLPVV 192
PG +H Y D V E LII DF+ Y + ++++YD I+KSL ++
Sbjct: 102 PGYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYII 157
>sp|Q6G9E7|ARLS_STAAS Signal transduction histidine-protein kinase ArlS OS=Staphylococcus
aureus (strain MSSA476) GN=arlS PE=3 SV=1
Length = 451
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 PGGDHEYIDVVNYNTAGSSERLIID-----IDFRSYFEIARAVDSYDRILKSLPVV 192
PG +H Y D V E LII DF+ Y + ++++YD I+KSL ++
Sbjct: 102 PGYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYII 157
>sp|Q7A5N3|ARLS_STAAN Signal transduction histidine-protein kinase ArlS OS=Staphylococcus
aureus (strain N315) GN=arlS PE=1 SV=1
Length = 451
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 PGGDHEYIDVVNYNTAGSSERLIID-----IDFRSYFEIARAVDSYDRILKSLPVV 192
PG +H Y D V E LII DF+ Y + ++++YD I+KSL ++
Sbjct: 102 PGYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYII 157
>sp|Q7A2R7|ARLS_STAAM Signal transduction histidine-protein kinase ArlS OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=arlS PE=3 SV=1
Length = 451
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 PGGDHEYIDVVNYNTAGSSERLIID-----IDFRSYFEIARAVDSYDRILKSLPVV 192
PG +H Y D V E LII DF+ Y + ++++YD I+KSL ++
Sbjct: 102 PGYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYII 157
>sp|Q5HG05|ARLS_STAAC Signal transduction histidine-protein kinase ArlS OS=Staphylococcus
aureus (strain COL) GN=arlS PE=3 SV=1
Length = 451
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 PGGDHEYIDVVNYNTAGSSERLIID-----IDFRSYFEIARAVDSYDRILKSLPVV 192
PG +H Y D V E LII DF+ Y + ++++YD I+KSL ++
Sbjct: 102 PGYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYII 157
>sp|Q9KJN3|ARLS_STAA8 Signal transduction histidine-protein kinase ArlS OS=Staphylococcus
aureus (strain NCTC 8325) GN=arlS PE=1 SV=1
Length = 451
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 PGGDHEYIDVVNYNTAGSSERLIID-----IDFRSYFEIARAVDSYDRILKSLPVV 192
PG +H Y D V E LII DF+ Y + ++++YD I+KSL ++
Sbjct: 102 PGYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYII 157
>sp|Q2FH24|ARLS_STAA3 Signal transduction histidine-protein kinase ArlS OS=Staphylococcus
aureus (strain USA300) GN=arlS PE=3 SV=1
Length = 451
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 142 PGGDHEYIDVVNYNTAGSSERLIID-----IDFRSYFEIARAVDSYDRILKSLPVV 192
PG +H Y D V E LII DF+ Y + ++++YD I+KSL ++
Sbjct: 102 PGYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYII 157
>sp|Q69RG7|4CLL7_ORYSJ 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica
GN=4CLL7 PE=2 SV=1
Length = 558
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 14 GDLWARG--IGGGFSHESEHDLALMVSDFLENGSAGTDSLCSSDSDSGFSDLAHLADKIS 71
G+LW RG + G+ ++E + + F G T LC D D + L + I
Sbjct: 400 GELWVRGPAVMTGYVGDNEAN----ATTFNSEGWLKTGDLCYIDQDGFLFVVDRLKELIK 455
Query: 72 FYKRSVPQYEMDLTSVVHSL 91
+ VP E++L V+HSL
Sbjct: 456 YKAYQVPPAELEL--VLHSL 473
>sp|O83691|Y693_TREPA Uncharacterized lipoprotein TP_0693 OS=Treponema pallidum (strain
Nichols) GN=TP_0693 PE=4 SV=1
Length = 440
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 14 GDLWARGIGGGFSHESEHDLALMVSDFLENGSAGTDSLCSSDSDSGFSDLAHLADKIS 71
G W +G G +EH AL E G TD+LC+ D+ + F++L L D S
Sbjct: 74 GSAWVQGTVGHI--PAEHHAALQAFFDTEEGMRITDALCTGDTYAAFNELEALYDPSS 129
>sp|Q4L3A8|Y2560_STAHJ UPF0753 protein SH2560 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=SH2560 PE=3 SV=1
Length = 856
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 184 RILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSLAYLQAKWQSPHQRDF 243
+++K+LP Y +LI L + D S L+ + + LP W + Y +A+ Q H+ D
Sbjct: 208 KMIKTLPQDYREALIMALNHLDIAEDERESYLTGHFLSLPGWAGMMYYRAE-QHEHEADL 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,599,156
Number of Sequences: 539616
Number of extensions: 4416290
Number of successful extensions: 11044
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 11043
Number of HSP's gapped (non-prelim): 17
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)