Query 021888
Match_columns 306
No_of_seqs 161 out of 213
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04720 DUF506: Protein of un 100.0 8.8E-69 1.9E-73 488.1 21.0 203 33-241 1-218 (218)
2 TIGR01615 A_thal_3542 uncharac 100.0 1.4E-62 3E-67 417.4 14.5 130 114-243 1-131 (131)
3 PF00797 Acetyltransf_2: N-ace 94.7 0.098 2.1E-06 47.2 6.9 55 113-172 52-109 (240)
4 PRK15047 N-hydroxyarylamine O- 92.4 0.42 9.2E-06 45.7 7.1 54 113-171 72-127 (281)
5 PF08742 C8: C8 domain; Inter 87.3 0.55 1.2E-05 35.4 2.7 62 163-229 10-71 (74)
6 PF14475 Mso1_Sec1_bdg: Sec1-b 75.0 3.1 6.6E-05 29.8 2.6 20 206-225 21-40 (41)
7 smart00460 TGc Transglutaminas 73.3 28 0.00061 24.8 7.5 56 106-168 7-67 (68)
8 COG2162 NhoA Arylamine N-acety 66.2 17 0.00038 35.3 6.4 60 113-177 73-135 (275)
9 PF01841 Transglut_core: Trans 63.1 20 0.00043 27.8 5.2 56 106-167 52-113 (113)
10 PF15645 Tox-PLDMTX: Dermonecr 60.6 26 0.00057 30.6 5.9 77 106-201 5-84 (135)
11 PF08774 VRR_NUC: VRR-NUC doma 47.1 27 0.00058 27.6 3.6 25 111-135 76-100 (100)
12 TIGR00514 accC acetyl-CoA carb 46.8 55 0.0012 32.6 6.5 112 113-226 13-134 (449)
13 PRK08462 biotin carboxylase; V 42.0 83 0.0018 31.2 6.9 109 114-226 16-136 (445)
14 PRK14675 hypothetical protein; 36.2 1.5E+02 0.0032 25.3 6.7 83 115-226 16-98 (125)
15 PF09551 Spore_II_R: Stage II 35.5 2.4E+02 0.0052 24.7 7.9 42 112-153 56-105 (130)
16 smart00832 C8 C8 domain. This 33.3 34 0.00073 26.5 2.1 63 162-229 9-73 (76)
17 PF01927 Mut7-C: Mut7-C RNAse 31.2 37 0.0008 29.2 2.2 17 116-132 11-27 (147)
18 COG3349 Uncharacterized conser 28.2 62 0.0013 33.9 3.6 72 117-207 15-86 (485)
19 PRK05586 biotin carboxylase; V 27.0 1.3E+02 0.0027 30.1 5.5 44 181-225 90-133 (447)
20 COG5005 Mu-like prophage prote 26.9 53 0.0011 29.1 2.4 61 179-241 9-70 (140)
21 PRK08591 acetyl-CoA carboxylas 26.1 1.3E+02 0.0027 29.8 5.2 44 181-225 90-133 (451)
22 TIGR01205 D_ala_D_alaTIGR D-al 25.4 2.8E+02 0.006 25.7 7.1 97 115-228 21-126 (315)
23 PRK15068 tRNA mo(5)U34 methylt 25.4 15 0.00032 35.5 -1.3 52 180-232 40-96 (322)
24 PRK08654 pyruvate carboxylase 25.3 1.5E+02 0.0032 30.6 5.7 46 181-227 90-135 (499)
25 PRK01372 ddl D-alanine--D-alan 22.4 3E+02 0.0065 25.4 6.7 47 182-229 74-120 (304)
26 cd00523 archeal_HJR Holliday j 22.2 3.4E+02 0.0073 23.2 6.4 49 114-172 9-57 (123)
27 PRK14569 D-alanyl-alanine synt 21.7 2.6E+02 0.0057 26.3 6.3 46 181-227 73-118 (296)
28 PRK12413 phosphomethylpyrimidi 21.3 1.9E+02 0.0041 26.1 5.1 47 159-205 96-145 (253)
29 PRK08463 acetyl-CoA carboxylas 21.0 1.1E+02 0.0024 31.0 3.9 46 181-227 89-134 (478)
30 PF12852 Cupin_6: Cupin 20.6 1.3E+02 0.0028 26.0 3.7 41 171-213 115-160 (186)
No 1
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=8.8e-69 Score=488.13 Aligned_cols=203 Identities=42% Similarity=0.705 Sum_probs=170.8
Q ss_pred HHHHHHHHHhCCCCCCCC-CC----------CCCCCCCCCchhhHHHhhhhhccCCChhHHH---HHHHHHHHHHhhhhc
Q 021888 33 LALMVSDFLENGSAGTDS-LC----------SSDSDSGFSDLAHLADKISFYKRSVPQYEMD---LTSVVHSLILSIKET 98 (306)
Q Consensus 33 La~MV~~FlE~~s~~~~s-~~----------~sdsd~~~~d~~~~~e~i~~l~~~~~~~E~~---LL~~V~~~v~~~~e~ 98 (306)
|++||++|||+++.+... .+ ++|++++..+..++.+.++.|..+.+..|.. |+++|.++++.....
T Consensus 1 Ls~mV~~FlE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~e~l~~Ll~~~~~~e~~~~~l~~~v~~~v~~~~~~ 80 (218)
T PF04720_consen 1 LSDMVQGFLEEEESSAPSFSFSGNGDDSSDEDSDSDSGSSESAEFWEELQELLQCISERESSRRRLLADVRRAVEEAKDE 80 (218)
T ss_pred CHHHHHHHhccCCcccccccccccCCCCccccccccCcccchHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhh
Confidence 789999999998653321 11 1111122223446777888776665555544 999999999764322
Q ss_pred ccccccCcCcchhhHHHHHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCC-CCCceeEEEecCccccceecc
Q 021888 99 DLHAVKSDQCNASCIRFVLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNT-AGSSERLIIDIDFRSYFEIAR 177 (306)
Q Consensus 99 ~l~~~~~~~~~~~~~rr~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~-~~~~~r~IVD~dFR~qFeIAr 177 (306)
- ..|.++|+|+.||++||.+||||+||||+|++++++|+|+||||||++.+. .++.+|||||||||+||||||
T Consensus 81 ~------~~~~~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~p~g~yeyIdV~~~~~~~~~~~r~IVd~~fr~~FeiAr 154 (218)
T PF04720_consen 81 I------KRGCRSCLRRSVMSRLRALGYDAAICKSRWESSGGIPAGEYEYIDVIVSGSSSGKSERYIVDPDFRSQFEIAR 154 (218)
T ss_pred h------cccchHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCcceeEEEEEECCCCCCcceeEEEecchHhCeeecC
Confidence 1 125689999999999999999999999999999999999999999999754 567899999999999999999
Q ss_pred CcHHHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCChhHHHhhhcCCCcc
Q 021888 178 AVDSYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSLAYLQAKWQSPHQR 241 (306)
Q Consensus 178 pT~~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ym~aKWl~~~~R 241 (306)
||++|+++|+.||.||||++++|++||++||+|||+|||++|||||||||.+|||+|||+||+|
T Consensus 155 pt~~Y~~ll~~lP~vfVG~~~~L~~iV~~~c~a~k~s~k~~g~~lPPWR~~~ym~aKW~~~y~R 218 (218)
T PF04720_consen 155 PTPEYAALLAALPEVFVGTPERLKQIVRLMCDAAKRSFKERGMHLPPWRKNSYMQAKWLSPYKR 218 (218)
T ss_pred CCHHHHHHHHhCCCceEcCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 2
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=1.4e-62 Score=417.40 Aligned_cols=130 Identities=50% Similarity=0.942 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCC-CCCceeEEEecCccccceeccCcHHHHHHHHhCCCc
Q 021888 114 RFVLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNT-AGSSERLIIDIDFRSYFEIARAVDSYDRILKSLPVV 192 (306)
Q Consensus 114 rr~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~-~~~~~r~IVD~dFR~qFeIArpT~~Y~~lL~~LP~v 192 (306)
||.||++||.+||||+||||+|++++++|+|+||||||++.++ .++.+|||||+|||+||||||||++|+++|++||.|
T Consensus 1 ~r~v~~~Lr~~Gy~AaiCkS~W~~s~~~p~G~yeyidV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~Y~~ll~~LP~v 80 (131)
T TIGR01615 1 RRIVMSLLRSLGYDAAICKSKWDSSGDIPAGKYEYIDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEEYKRLLESLPEV 80 (131)
T ss_pred ChhHHHHHHHCCCCeeeEEeecCCCCCCCCCceeeEEEEecCCCCCCcceEEEeccchhhceecCCCHHHHHHHHhCCcc
Confidence 4789999999999999999999999999999999999998653 356789999999999999999999999999999999
Q ss_pred eeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCChhHHHhhhcCCCccCC
Q 021888 193 YVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSLAYLQAKWQSPHQRDF 243 (306)
Q Consensus 193 FVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ym~aKWl~~~~R~~ 243 (306)
|||+.++|++||++||+|||+|||++|||||||||.+|||||||+||+|++
T Consensus 81 FVG~~~rL~~iV~~mc~Aak~Slk~~gmhlPPWRk~~ym~aKWl~~~~R~~ 131 (131)
T TIGR01615 81 FVGTTERLRQLVRLMCDAAKKSLKKKGMPLPPWRKNRYMQSKWLGPYKRTS 131 (131)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHhccCCccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 3
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=94.74 E-value=0.098 Score=47.16 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCceeeeeecc--CCCCC-CCCCcceEEEEEecCCCCCceeEEEecCcccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTRW--QGSGK-VPGGDHEYIDVVNYNTAGSSERLIIDIDFRSY 172 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~W--~~s~~-~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~q 172 (306)
+...+...|+++||++.++.++= ..... .+.+.|--|.|.+ .+.+|+||+.|=..
T Consensus 52 lN~lf~~lL~~lGf~v~~~~arv~~~~~~~~~~~~~H~~liV~~-----~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 52 LNGLFYWLLRELGFDVTLVSARVYSPGGPDYWPPRTHLVLIVTL-----DGERYLVDVGFGGP 109 (240)
T ss_dssp HHHHHHHHHHHCT-EEEEEEEEEETTTTTCCSSSEEEEEEEEEE-----TTEEEEE-SSSTTC
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCceEEEEEEE-----CCEEEEEeccCCCc
Confidence 55788999999999999999873 23232 5788999999998 46799999999876
No 4
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=92.38 E-value=0.42 Score=45.69 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCceeeeeec--cCCCCCCCCCcceEEEEEecCCCCCceeEEEecCccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTR--WQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRS 171 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~--W~~s~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~ 171 (306)
+...+...|+++||++.....+ |...+..++..|-.+.|.+ .+.+|+||+.|-+
T Consensus 72 ~N~Lf~~~L~~LGF~v~~~~arV~~~~~~~~~~~tH~~l~V~i-----~~~~yLvDVGFG~ 127 (281)
T PRK15047 72 QNGLFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVEL-----EGEKWIADVGFGG 127 (281)
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEecCCCCCCCcCcEEEEEEE-----CCeeEEEEecCCC
Confidence 4567899999999999988776 3333445778999999998 4679999999986
No 5
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=87.32 E-value=0.55 Score=35.42 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=44.6
Q ss_pred EEEecCccccceeccCcHHHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCChh
Q 021888 163 LIIDIDFRSYFEIARAVDSYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSLA 229 (306)
Q Consensus 163 ~IVD~dFR~qFeIArpT~~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ 229 (306)
+|.|+.|+.=+.+.-|++-|...+..+=. +-|.. ..+-..|.+-++.+ +..|..+++||+..
T Consensus 10 ~l~~~~F~~C~~~v~~~~f~~~C~~d~C~-~~~~~---~~~C~~l~~Ya~~C-~~~g~~~~~WR~~~ 71 (74)
T PF08742_consen 10 ILLDPEFAPCHSVVDPDPFYEACVYDMCA-CPGSQ---QCLCEALSAYAREC-QRAGICVGDWRTPT 71 (74)
T ss_pred HHcCchhhhhcccCccHHHHHHHHHHHcC-CCCCc---chhhHHHHHHHHHH-HHCcCCCCCCCCcC
Confidence 45688899999999999999999866543 22222 34445555555555 67899999999864
No 6
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=74.99 E-value=3.1 Score=29.77 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=18.8
Q ss_pred HHHHHHHhhHhhCCCCCCCC
Q 021888 206 VMVDAARSSLSQNSMPLPPW 225 (306)
Q Consensus 206 ~mc~Aak~S~k~~Gm~lPPW 225 (306)
++|.++.+-.+++|.++|+|
T Consensus 21 ~v~r~l~~yY~~k~~~~P~W 40 (41)
T PF14475_consen 21 HVHRVLRKYYTEKGRPFPGW 40 (41)
T ss_pred HHHHHHHHHHHHcCCCCCCc
Confidence 67999999999999999999
No 7
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=73.32 E-value=28 Score=24.77 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=40.1
Q ss_pred cCcchhhHHHHHHHHHHhcCCceeeeeec-cCCCCC----CCCCcceEEEEEecCCCCCceeEEEecC
Q 021888 106 DQCNASCIRFVLVKLLRLSGYDAAVCSTR-WQGSGK----VPGGDHEYIDVVNYNTAGSSERLIIDID 168 (306)
Q Consensus 106 ~~~~~~~~rr~l~~~Lr~~GydAaiCkS~-W~~s~~----~p~G~hEyIdV~~~~~~~~~~r~IVD~d 168 (306)
|.|.. .-..++..||.+|+.|.++..- +..+.. -+...|.++.|-+ .+.-+.+||.
T Consensus 7 G~C~~--~a~l~~~llr~~GIpar~v~g~~~~~~~~~~~~~~~~~H~W~ev~~-----~~~W~~~D~~ 67 (68)
T smart00460 7 GTCGE--FAALFVALLRSLGIPARVVSGYLKAPDTIGGLRSIWEAHAWAEVYL-----EGGWVPVDPT 67 (68)
T ss_pred eeeHH--HHHHHHHHHHHCCCCeEEEeeeecCCCCCcccccCCCcEEEEEEEE-----CCCeEEEeCC
Confidence 45543 3467889999999999999763 322222 2467899999987 2678889985
No 8
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.23 E-value=17 Score=35.32 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCceee--eeeccCCC-CCCCCCcceEEEEEecCCCCCceeEEEecCccccceecc
Q 021888 113 IRFVLVKLLRLSGYDAAV--CSTRWQGS-GKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSYFEIAR 177 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAai--CkS~W~~s-~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~qFeIAr 177 (306)
++-.+...|+++||+... |.=.|... +..|.+.|.=|-|.+ .++-+|+|+.|=.+--.|+
T Consensus 73 lNglf~~vL~~lGF~v~~l~arV~~g~~~~a~~~~tH~~L~v~~-----~~~~~l~DvGFGg~~l~AP 135 (275)
T COG2162 73 LNGLFGRVLRELGFNVRLLLARVVWGLAPDALPPRTHRLLLVEL-----EGETWLADVGFGGQTLTAP 135 (275)
T ss_pred hhhHHHHHHHHcCCcceeeEEEEEecCCCCCCCcccceEEEEEe-----cCceeEEecCCCCCCcCCC
Confidence 456778899999999976 66679875 467789999999998 4569999999997766673
No 9
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=63.15 E-value=20 Score=27.82 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=37.6
Q ss_pred cCcchhhHHHHHHHHHHhcCCceeeeeeccCCCC------CCCCCcceEEEEEecCCCCCceeEEEec
Q 021888 106 DQCNASCIRFVLVKLLRLSGYDAAVCSTRWQGSG------KVPGGDHEYIDVVNYNTAGSSERLIIDI 167 (306)
Q Consensus 106 ~~~~~~~~rr~l~~~Lr~~GydAaiCkS~W~~s~------~~p~G~hEyIdV~~~~~~~~~~r~IVD~ 167 (306)
|.|. .+-..++..||.+|+.|.+......... ......|-...|-+ ..+..+.+||
T Consensus 52 G~C~--~~a~l~~allr~~Gipar~v~g~~~~~~~~~~~~~~~~~~H~w~ev~~----~~~~W~~~Dp 113 (113)
T PF01841_consen 52 GDCE--DYASLFVALLRALGIPARVVSGYVKGPDPDGDYSVDGNDNHAWVEVYL----PGGGWIPLDP 113 (113)
T ss_dssp ESHH--HHHHHHHHHHHHHT--EEEEEEEEEECSSTTCTSTSSEEEEEEEEEEE----TTTEEEEEET
T ss_pred CccH--HHHHHHHHHHhhCCCceEEEEEEcCCccccccccCCCCCCEEEEEEEE----cCCcEEEcCC
Confidence 4553 3457889999999999988866543321 23456799999987 2456888887
No 10
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=60.56 E-value=26 Score=30.63 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=51.3
Q ss_pred cCcchhhHHHHHHHHHHhcCC-ceeeee-eccCCCCCCCCCcceEEEEEecCCCCCceeEEEecCccccceeccCcHHHH
Q 021888 106 DQCNASCIRFVLVKLLRLSGY-DAAVCS-TRWQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSYFEIARAVDSYD 183 (306)
Q Consensus 106 ~~~~~~~~rr~l~~~Lr~~Gy-dAaiCk-S~W~~s~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~ 183 (306)
++|..++ +.|+..||..|| |..+.. .-|++.....+-+|-=+.+.. .|.-|||||-- -||.=--.
T Consensus 5 ~~C~~a~--~~v~~~lk~~g~~~~k~~~l~~W~~~~~~~p~NH~vv~~k~-----~g~eyV~D~Ta-~QF~~~~~----- 71 (135)
T PF15645_consen 5 EQCESAM--KEVADFLKDKGYEDIKYRGLLIWENANDDSPTNHFVVVAKK-----NGKEYVFDPTA-HQFSNKGN----- 71 (135)
T ss_pred HHHHHHH--HHHHHHHHhCCCCcceeeEEEEecCCCccCCcceEEEEEEE-----CCEEEEEeCcH-HHhhccCC-----
Confidence 4564433 679999999999 533332 248777777778886665555 58999999974 34442111
Q ss_pred HHHHhCC-CceeeChHHHH
Q 021888 184 RILKSLP-VVYVGSLIRLK 201 (306)
Q Consensus 184 ~lL~~LP-~vFVG~~~rL~ 201 (306)
+ .+|+|+.+.=.
T Consensus 72 ------~~~p~i~~~~~W~ 84 (135)
T PF15645_consen 72 ------DNGPIILPEDAWK 84 (135)
T ss_pred ------CCCceEecHHHHH
Confidence 2 68888887655
No 11
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=47.09 E-value=27 Score=27.59 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHhcCCceeeeeecc
Q 021888 111 SCIRFVLVKLLRLSGYDAAVCSTRW 135 (306)
Q Consensus 111 ~~~rr~l~~~Lr~~GydAaiCkS~W 135 (306)
+-..+...+.|+..|+++.||.+.|
T Consensus 76 s~~Q~~~~~~l~~~G~~v~V~~~~~ 100 (100)
T PF08774_consen 76 SPNQKEWIDKLREAGFRVAVCRSVE 100 (100)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEccC
Confidence 3345666799999999999999987
No 12
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=46.75 E-value=55 Score=32.57 Aligned_cols=112 Identities=9% Similarity=0.031 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCceeeeeeccCCC-CCCCCCcceEEEEEecCC--CCCceeEEEecCccccceeccCc-------HHH
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTRWQGS-GKVPGGDHEYIDVVNYNT--AGSSERLIIDIDFRSYFEIARAV-------DSY 182 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~W~~s-~~~p~G~hEyIdV~~~~~--~~~~~r~IVD~dFR~qFeIArpT-------~~Y 182 (306)
+-..++..++.+||...+|.+.-+.. ..+. .-++|+.+.-..+ .-....-|+++-++.+..+-.|+ ..+
T Consensus 13 ~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~-~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~~ 91 (449)
T TIGR00514 13 IALRILRACKELGIKTVAVHSTADRDALHVL-LADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANF 91 (449)
T ss_pred HHHHHHHHHHHcCCeEEEEEChhhhcccccc-cCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHHH
Confidence 44678999999999999997643322 2221 2234443310000 00000113333333333322221 235
Q ss_pred HHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCC
Q 021888 183 DRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWR 226 (306)
Q Consensus 183 ~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWR 226 (306)
..+++.+-..|+|+......+..= =..+|+-|++.|.+.|||-
T Consensus 92 a~~~e~~Gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gip~pp~~ 134 (449)
T TIGR00514 92 AEQCERSGFTFIGPSAESIRLMGD-KVSAIETMKKAGVPCVPGS 134 (449)
T ss_pred HHHHHHCCCcEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 677888887788876554333211 2367888999999999984
No 13
>PRK08462 biotin carboxylase; Validated
Probab=42.02 E-value=83 Score=31.16 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCCCCCceeE-----EEecCccccceeccCc-------HH
Q 021888 114 RFVLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNTAGSSERL-----IIDIDFRSYFEIARAV-------DS 181 (306)
Q Consensus 114 rr~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~~~~~~r~-----IVD~dFR~qFeIArpT-------~~ 181 (306)
.-.++..++++||.+..|.+.-+.....-.--++++.+-. ......| |+++--+.++...-|+ ..
T Consensus 16 ~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~---~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~ 92 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGG---AKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQN 92 (445)
T ss_pred HHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCC---CchhcccCCHHHHHHHHHHcCCCEEEECCCccccCHH
Confidence 3468899999999999998766543211122234443311 0001122 2222222233222232 34
Q ss_pred HHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCC
Q 021888 182 YDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWR 226 (306)
Q Consensus 182 Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWR 226 (306)
...+++.+-..|+|+...-..+..= =..+|+-|++.|.+.|||.
T Consensus 93 ~a~~~e~~Gi~~~g~~~~~~~~~~d-K~~~r~~l~~~gIp~pp~~ 136 (445)
T PRK08462 93 FVEICSHHNIKFIGPSVEVMALMSD-KSKAKEVMKRAGVPVIPGS 136 (445)
T ss_pred HHHHHHHCCCeEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 4456777777788987654433211 2467788999999999985
No 14
>PRK14675 hypothetical protein; Provisional
Probab=36.16 E-value=1.5e+02 Score=25.28 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCCCCCceeEEEecCccccceeccCcHHHHHHHHhCCCcee
Q 021888 115 FVLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSYFEIARAVDSYDRILKSLPVVYV 194 (306)
Q Consensus 115 r~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~lL~~LP~vFV 194 (306)
...+..|...||. |..-.|.. + |=.||++... ...-++||+-.|..-..+.|-.. |
T Consensus 16 ~~A~~~L~~~G~~--il~rn~r~----~---~GEIDlIa~d---~~~lvFVEVK~R~~~~~g~~~~a------------V 71 (125)
T PRK14675 16 SIAVTYLKGLRYK--IVERNFRC----R---CGEIDIIARD---GKTLVFVEVKTRKNYAYGVPQLA------------V 71 (125)
T ss_pred HHHHHHHHHCCCE--EEEEEEeC----C---CCeEEEEEEe---CCEEEEEEEEeccCCCCcChHHc------------C
Confidence 4568999999997 44556643 2 5679999742 35899999999976554444221 2
Q ss_pred eChHHHHHHHHHHHHHHHhhHhhCCCCCCCCC
Q 021888 195 GSLIRLKQFLQVMVDAARSSLSQNSMPLPPWR 226 (306)
Q Consensus 195 G~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWR 226 (306)
... +.+ -|..+|+.-|.++++.-.|+|
T Consensus 72 ~~~-K~~----ri~~~A~~yL~~~~~~~~~~R 98 (125)
T PRK14675 72 TPF-KQR----QISKAALTWLAKKKLLDAEAR 98 (125)
T ss_pred CHH-HHH----HHHHHHHHHHHHCCCCCCCEE
Confidence 111 111 556677777888876334444
No 15
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=35.49 E-value=2.4e+02 Score=24.67 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhcCCceeeeeecc--------CCCCCCCCCcceEEEEEe
Q 021888 112 CIRFVLVKLLRLSGYDAAVCSTRW--------QGSGKVPGGDHEYIDVVN 153 (306)
Q Consensus 112 ~~rr~l~~~Lr~~GydAaiCkS~W--------~~s~~~p~G~hEyIdV~~ 153 (306)
-|+...-+.|...|||-.+-..-. -+.-.+|+|+|+.+-|.+
T Consensus 56 ~Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlrI~I 105 (130)
T PF09551_consen 56 EIEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGEYEALRITI 105 (130)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCceEEEEEEe
Confidence 355566688889997754443322 234468999999999998
No 16
>smart00832 C8 C8 domain. This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.
Probab=33.29 E-value=34 Score=26.51 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=41.0
Q ss_pred eEEEecC--ccccceeccCcHHHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCChh
Q 021888 162 RLIIDID--FRSYFEIARAVDSYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSLA 229 (306)
Q Consensus 162 r~IVD~d--FR~qFeIArpT~~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ 229 (306)
.+|.+++ |+.--.+=-|++-|+..+.-+=.. -|..+.|-..+ ..-++.+. +.|..+.+||+..
T Consensus 9 ~~l~~~~g~F~~Ch~~V~p~~f~~~Cv~D~C~~-~~~~~~lC~al---~aYa~aC~-~~Gv~v~~WR~~~ 73 (76)
T smart00832 9 GILLSPRGPFAACHSVVDPEPFFENCVYDTCAC-GGDCECLCDAL---AAYAAACA-EAGVCISPWRTPT 73 (76)
T ss_pred HhhcCCCCChHHHhCcCChHHHHHHHHHHHhCC-CCCCcccCHHH---HHHHHHHH-HCcCcCCCCCCCC
Confidence 3566663 777666778999999998655322 24444444443 44444444 5899999999865
No 17
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=31.22 E-value=37 Score=29.20 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCceeeee
Q 021888 116 VLVKLLRLSGYDAAVCS 132 (306)
Q Consensus 116 ~l~~~Lr~~GydAaiCk 132 (306)
.||+.||.+||||..+.
T Consensus 11 ~Lar~LR~lG~Dt~~~~ 27 (147)
T PF01927_consen 11 RLARWLRLLGYDTLYSR 27 (147)
T ss_pred HHHHHHHHCCCcEEEeC
Confidence 58999999999999764
No 18
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=28.15 E-value=62 Score=33.87 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=51.3
Q ss_pred HHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCCCCCceeEEEecCccccceeccCcHHHHHHHHhCCCceeeC
Q 021888 117 LVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSYFEIARAVDSYDRILKSLPVVYVGS 196 (306)
Q Consensus 117 l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~lL~~LP~vFVG~ 196 (306)
-|..|..+|||..||.++|.-.|++.++.- +.--++|-.|+-=| ..|..+++.++++....
T Consensus 15 ~a~~La~~g~~vt~~ea~~~~GGk~~s~~~-------------~dg~~~E~glh~f~------~~Y~n~~~ll~~~~~~~ 75 (485)
T COG3349 15 AAYELADAGYDVTLYEARDRLGGKVASWRD-------------SDGNHVEHGLHVFF------GCYYNLLTLLKELPIED 75 (485)
T ss_pred HHHHHHhCCCceEEEeccCccCceeeeeec-------------CCCCeeeeeeEEec------hhHHHHHHHhhhCCchh
Confidence 467899999999999999987676655432 11223344444333 57999999999998887
Q ss_pred hHHHHHHHHHH
Q 021888 197 LIRLKQFLQVM 207 (306)
Q Consensus 197 ~~rL~~iV~~m 207 (306)
..+++..+.+.
T Consensus 76 ~~~~~~~~~~~ 86 (485)
T COG3349 76 RLQLREHTKTF 86 (485)
T ss_pred eeehHhhhhhh
Confidence 77777776665
No 19
>PRK05586 biotin carboxylase; Validated
Probab=27.02 E-value=1.3e+02 Score=30.08 Aligned_cols=44 Identities=16% Similarity=0.344 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCC
Q 021888 181 SYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPW 225 (306)
Q Consensus 181 ~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPW 225 (306)
.-+.+++.+--.|+|+..+...+..= =..+|+-|++.|.++|||
T Consensus 90 ~~a~~~~~~gi~~~g~s~~~~~~~~D-K~~~k~~l~~~GIpvp~~ 133 (447)
T PRK05586 90 KFAKMCKECNIVFIGPDSETIELMGN-KSNAREIMIKAGVPVVPG 133 (447)
T ss_pred HHHHHHHHCCCcEECcCHHHHHhhCC-HHHHHHHHHHCCCCCCCC
Confidence 55567777888889987654443321 246788899999999998
No 20
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=26.90 E-value=53 Score=29.09 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=47.4
Q ss_pred cHHHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCChhH-HHhhhcCCCcc
Q 021888 179 VDSYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSLAY-LQAKWQSPHQR 241 (306)
Q Consensus 179 T~~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~y-m~aKWl~~~~R 241 (306)
|..-++-|.+|-.+.=|+-+=.+.+..+|-.|++..|..-|-| -|++.+| +.-|=|.-..|
T Consensus 9 ~~~i~~~~~~laq~~~~rk~Lmr~vA~~m~sav~~nF~~~grP--~w~~~Ky~r~Gk~L~~~Gr 70 (140)
T COG5005 9 TSTIQQKLEALAQVTDGRKDLMRSVAGTMRSAVEKNFELEGRP--KWKKRKYGRTGKILQDSGR 70 (140)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCc--chhhcccCCCCCceeecch
Confidence 3344555666666777777888999999999999999999986 8999999 77666665555
No 21
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=26.11 E-value=1.3e+02 Score=29.83 Aligned_cols=44 Identities=11% Similarity=0.297 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCC
Q 021888 181 SYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPW 225 (306)
Q Consensus 181 ~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPW 225 (306)
.+..+++.+-..|+|+......+..= =..+|+-|++.|.+.|||
T Consensus 90 ~~~~~~e~~gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gIp~pp~ 133 (451)
T PRK08591 90 DFAEICEDSGFTFIGPSAETIRLMGD-KVTAKATMKKAGVPVVPG 133 (451)
T ss_pred HHHHHHHHCCCceECcCHHHHHHhcC-HHHHHHHHHHcCCCCCCC
Confidence 46778888888888876554433321 235788899999999998
No 22
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=25.44 E-value=2.8e+02 Score=25.73 Aligned_cols=97 Identities=23% Similarity=0.203 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCceeeeeeccCCCC---CCCCC------cceEEEEEecCCCCCceeEEEecCccccceeccCcHHHHHH
Q 021888 115 FVLVKLLRLSGYDAAVCSTRWQGSG---KVPGG------DHEYIDVVNYNTAGSSERLIIDIDFRSYFEIARAVDSYDRI 185 (306)
Q Consensus 115 r~l~~~Lr~~GydAaiCkS~W~~s~---~~p~G------~hEyIdV~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~l 185 (306)
+.|.+.|++.||++.++...=.+.. .+..- .-+-+|++++...+. +. .....+++
T Consensus 21 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~-------------~~---~~~~~~~~ 84 (315)
T TIGR01205 21 AAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGR-------------YG---EDGTIQGL 84 (315)
T ss_pred HHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCC-------------CC---CCcHHHHH
Confidence 4688999999999999976532211 11100 001134443210000 00 11245778
Q ss_pred HHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCCh
Q 021888 186 LKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSL 228 (306)
Q Consensus 186 L~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~ 228 (306)
++.+--.|+|.......+.. ==..+++-|++.|.++|||...
T Consensus 85 le~~gip~~g~~~~~~~~~~-dK~~~~~~l~~~gip~p~~~~~ 126 (315)
T TIGR01205 85 LELMGIPYTGSGVLASALSM-DKLLTKLLWKALGLPTPDYIVL 126 (315)
T ss_pred HHHcCCCccCCCHHHHHHHH-CHHHHHHHHHHCCCCCCCEEEE
Confidence 88888888897543332211 1135677899999999999854
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=25.42 E-value=15 Score=35.49 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCceeeChHHHHHHHHH-----HHHHHHhhHhhCCCCCCCCCChhHHH
Q 021888 180 DSYDRILKSLPVVYVGSLIRLKQFLQV-----MVDAARSSLSQNSMPLPPWRSLAYLQ 232 (306)
Q Consensus 180 ~~Y~~lL~~LP~vFVG~~~rL~~iV~~-----mc~Aak~S~k~~Gm~lPPWRk~~ym~ 232 (306)
+.|...|+.||.+- +..-.|..-|.+ +.++.++.+......+.|||+-.|-.
T Consensus 40 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pwrkg~~~~ 96 (322)
T PRK15068 40 KKWEKALEQLPELT-PDRLDLLDSVTIGSEEPLSEGQRKRIENLLRALMPWRKGPFSL 96 (322)
T ss_pred HHHHHHHHhccCCC-cceeccCCceEeccCCCCCHHHHHHHHHHHHhhcCcccCCccc
Confidence 77999999999764 332345554544 57888889999999999999998875
No 24
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=25.31 E-value=1.5e+02 Score=30.60 Aligned_cols=46 Identities=11% Similarity=0.258 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCC
Q 021888 181 SYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRS 227 (306)
Q Consensus 181 ~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk 227 (306)
...+.++.+--.|+|+....-.+..= =..+|+-|++.|.++|||..
T Consensus 90 ~~a~~~e~~gi~~iGps~~~i~~~~D-K~~~k~~l~~~GVpv~p~~~ 135 (499)
T PRK08654 90 EFAKACEKAGIVFIGPSSDVIEAMGS-KINAKKLMKKAGVPVLPGTE 135 (499)
T ss_pred HHHHHHHHCCCcEECCCHHHHHHhCC-HHHHHHHHHHcCcCCCCCcC
Confidence 45677777888899976543332211 23578889999999999975
No 25
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.38 E-value=3e+02 Score=25.40 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=31.1
Q ss_pred HHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCChh
Q 021888 182 YDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSLA 229 (306)
Q Consensus 182 Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ 229 (306)
+..+++.+--.|+|+......+.. ==..+|+-|++.|.+.|||....
T Consensus 74 ~~~~le~~gi~~~g~~~~~~~~~~-dK~~~k~~l~~~gIp~p~~~~~~ 120 (304)
T PRK01372 74 IQGLLELLGIPYTGSGVLASALAM-DKLRTKLVWQAAGLPTPPWIVLT 120 (304)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHh-CHHHHHHHHHHCCCCCCCEEEEe
Confidence 456788887778888633222211 01356777999999999997543
No 26
>cd00523 archeal_HJR Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain eukaryotes, however this CD includes only the archeal HJR's. The bacterial and archeal HJRs perform a similar function but differ in both sequence and structure. Structural similarity does however, exist between the archeal HJRs and type II restriction endonucleases, such as EcoRV, BglII, and Fok, and this similarity includes their active site configurations.
Probab=22.22 E-value=3.4e+02 Score=23.18 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCCCCCceeEEEecCcccc
Q 021888 114 RFVLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSY 172 (306)
Q Consensus 114 rr~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~q 172 (306)
-+.++..|...||.+- +..+++ ++.+-.||++.. ..+.-++||+-.|..
T Consensus 9 E~~a~~~L~~~G~~vl----R~~~sG---~~~~~eiDIIA~---~~~~lvfVEVK~r~~ 57 (123)
T cd00523 9 ERELVKILEEKGFAVV----RAPGSG---GGPRPLPDIVAG---NGGTYLAIEVKSTKK 57 (123)
T ss_pred HHHHHHHHHhCCCEEE----EEcCCC---CCCCCceeEEEe---cCCEEEEEEEEecCC
Confidence 3689999999999987 222222 223568999973 236889999998875
No 27
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=21.75 E-value=2.6e+02 Score=26.25 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCC
Q 021888 181 SYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRS 227 (306)
Q Consensus 181 ~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk 227 (306)
..+.+++.+=--|+|+..+-..+- .==..+|+-|++.|.+.|||+-
T Consensus 73 ~i~~~le~~gip~~Gs~~~a~~l~-~DK~~~k~~l~~~gIptp~~~~ 118 (296)
T PRK14569 73 RVSALLEMLEIKHTSSSMKSSVIT-MDKMISKEILMHHRMPTPMAKF 118 (296)
T ss_pred HHHHHHHHcCCCeeCCCHHHHHHH-HCHHHHHHHHHHCCCCCCCeEE
Confidence 356788877777888664332221 1124567789999999999964
No 28
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=21.35 E-value=1.9e+02 Score=26.06 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=30.6
Q ss_pred CceeEEEecCccccceeccCcHHHHHHH-HhCC--CceeeChHHHHHHHH
Q 021888 159 SSERLIIDIDFRSYFEIARAVDSYDRIL-KSLP--VVYVGSLIRLKQFLQ 205 (306)
Q Consensus 159 ~~~r~IVD~dFR~qFeIArpT~~Y~~lL-~~LP--~vFVG~~~rL~~iV~ 205 (306)
.+.++|+||.++...--.-..+.+...+ ..+| .++....+.+..+..
T Consensus 96 ~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g 145 (253)
T PRK12413 96 PGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSG 145 (253)
T ss_pred CCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhC
Confidence 3568999999997653111123444444 4578 678888888887765
No 29
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=21.02 E-value=1.1e+02 Score=30.98 Aligned_cols=46 Identities=13% Similarity=0.357 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCC
Q 021888 181 SYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRS 227 (306)
Q Consensus 181 ~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk 227 (306)
...+.+..+--.|+|+......+..= =..+|+-|++.|.++|||-.
T Consensus 89 ~~a~~~e~~Gi~~iGps~~~i~~~~D-K~~~k~~l~~~gIpvpp~~~ 134 (478)
T PRK08463 89 EFAKAVEDAGIIFIGPKSEVIRKMGN-KNIARYLMKKNGIPIVPGTE 134 (478)
T ss_pred HHHHHHHHCCCceecCCHHHHHhhCc-HHHHHHHHHHcCCCCCCCcc
Confidence 45677788888899986654444333 25788889999999999853
No 30
>PF12852 Cupin_6: Cupin
Probab=20.65 E-value=1.3e+02 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=31.1
Q ss_pred ccceeccCcHHHHHHHHhCCCceee-----ChHHHHHHHHHHHHHHHh
Q 021888 171 SYFEIARAVDSYDRILKSLPVVYVG-----SLIRLKQFLQVMVDAARS 213 (306)
Q Consensus 171 ~qFeIArpT~~Y~~lL~~LP~vFVG-----~~~rL~~iV~~mc~Aak~ 213 (306)
.+|++..+.. ..+++.||++++= ..+.|..++++|-+++..
T Consensus 115 g~~~~~~~~~--~~Ll~~LP~~i~i~~~~~~~~~L~~~l~~l~~E~~~ 160 (186)
T PF12852_consen 115 GRFEFDPGAA--HPLLAALPPVIHIRADDAAAPWLAALLALLRSESAQ 160 (186)
T ss_pred EEEEECCccc--chhHhhCCCeEEEecCCCCchhHHHHHHHHHHHHhc
Confidence 4566665544 6789999988776 678899999999877654
Done!