Query 021888
Match_columns 306
No_of_seqs 161 out of 213
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e2t_A NAT, N-hydroxyarylamine 93.8 0.15 5.1E-06 47.0 7.7 55 113-172 75-131 (284)
2 2bsz_A Arylamine N-acetyltrans 93.0 0.21 7.2E-06 46.0 7.2 55 113-172 76-133 (278)
3 1w4t_A Arylamine N-acetyltrans 93.0 0.19 6.6E-06 46.8 7.0 55 113-172 96-154 (299)
4 2vfb_A Arylamine N-acetyltrans 91.6 0.31 1.1E-05 44.8 6.5 55 113-172 73-133 (280)
5 1w5r_A Arylamine N-acetyltrans 91.5 0.27 9.4E-06 45.1 6.0 55 113-172 76-136 (278)
6 3lnb_A N-acetyltransferase fam 91.3 0.34 1.2E-05 45.6 6.5 55 113-172 102-159 (309)
7 3d9w_A Putative acetyltransfer 90.8 0.34 1.2E-05 44.9 6.0 54 113-170 85-140 (293)
8 2ija_A Arylamine N-acetyltrans 87.4 1.1 3.9E-05 41.2 6.8 56 113-173 76-134 (295)
9 3kd4_A Putative protease; stru 57.1 20 0.0007 35.1 6.9 56 106-168 285-344 (506)
10 4eg0_A D-alanine--D-alanine li 47.9 22 0.00077 31.6 5.1 94 115-228 35-128 (317)
11 3vot_A L-amino acid ligase, BL 34.2 1.7E+02 0.0059 26.9 9.0 36 116-151 19-54 (425)
12 1iow_A DD-ligase, DDLB, D-ALA\ 31.0 78 0.0027 27.2 5.7 94 115-228 24-117 (306)
13 4fu0_A D-alanine--D-alanine li 26.7 1.6E+02 0.0054 26.8 7.2 45 181-227 114-159 (357)
14 3se7_A VANA; alpha-beta struct 25.5 2E+02 0.0069 25.8 7.6 46 181-228 107-153 (346)
15 3ouz_A Biotin carboxylase; str 21.9 87 0.003 29.2 4.6 107 113-226 17-138 (446)
16 3v4g_A Arginine repressor; vib 21.5 27 0.00094 30.6 0.9 104 79-196 29-148 (180)
17 2z06_A Putative uncharacterize 21.3 49 0.0017 30.1 2.6 31 99-129 30-61 (252)
No 1
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=93.85 E-value=0.15 Score=47.04 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCceeeeeec--cCCCCCCCCCcceEEEEEecCCCCCceeEEEecCcccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTR--WQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSY 172 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~--W~~s~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~q 172 (306)
+...+...|+++||++..+..+ |...+..|+..|-.+.|.+ .+.+||||+.|=+.
T Consensus 75 lN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~i-----dg~~ylvDVGFG~~ 131 (284)
T 1e2t_A 75 LNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDV-----EDEQWIADVGFGGQ 131 (284)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEE-----TTEEEEECSCSCTT
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEE-----CCceEEEecCCCcc
Confidence 4567889999999999998876 5444455688999999998 46799999999763
No 2
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=93.01 E-value=0.21 Score=45.96 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCceeeeeec--cCCCCCC-CCCcceEEEEEecCCCCCceeEEEecCcccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTR--WQGSGKV-PGGDHEYIDVVNYNTAGSSERLIIDIDFRSY 172 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~--W~~s~~~-p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~q 172 (306)
+...+...|+++||++..+..+ |...+.. ++..|-.+.|.+ .+.+||||+.|=+.
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~i-----dg~~ylvDVGFG~~ 133 (278)
T 2bsz_A 76 HNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVEL-----DGRTYIADVGFGGL 133 (278)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEE-----TTEEEEECSCCSSS
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEE-----CCceEEEeCCCCcc
Confidence 4567889999999999998876 4444554 478899999998 36799999999774
No 3
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=93.00 E-value=0.19 Score=46.78 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCceeeeeec--cCCCCCC--CCCcceEEEEEecCCCCCceeEEEecCcccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTR--WQGSGKV--PGGDHEYIDVVNYNTAGSSERLIIDIDFRSY 172 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~--W~~s~~~--p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~q 172 (306)
+...+...|+++||++..+..+ |...+.. ++..|-.+.|.+ .+.+||||+.|=+.
T Consensus 96 lN~Lf~~~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~i-----dg~~ylvDVGFG~~ 154 (299)
T 1w4t_A 96 LNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYL-----AEGEFLVDVGFGSA 154 (299)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEE-----TTEEEEECSCSGGG
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEE-----CCceEEEeCCCCCc
Confidence 4567889999999999998875 4444445 678999999998 36899999999774
No 4
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=91.58 E-value=0.31 Score=44.80 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCceeeeeec--cCCCCCC--CCCcceEEEEEecCCCCCcee--EEEecCcccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTR--WQGSGKV--PGGDHEYIDVVNYNTAGSSER--LIIDIDFRSY 172 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~--W~~s~~~--p~G~hEyIdV~~~~~~~~~~r--~IVD~dFR~q 172 (306)
+...+...|+++||++..+..+ |...+.. ++..|-.+.|.+ .+.+ ||||+.|=+.
T Consensus 73 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~i-----dg~~~~ylvDVGFG~~ 133 (280)
T 2vfb_A 73 HNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTF-----PGCQGPYLVDVGFGGM 133 (280)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEEC-----TTCSSCEEECSCSGGG
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEE-----CCeEEEEEEecCCCcc
Confidence 4567889999999999998876 5555555 478999999988 3457 9999999774
No 5
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=91.49 E-value=0.27 Score=45.12 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCceeeeeec--cCCCCCC--CCCcceEEEEEecCCCCCcee--EEEecCcccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTR--WQGSGKV--PGGDHEYIDVVNYNTAGSSER--LIIDIDFRSY 172 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~--W~~s~~~--p~G~hEyIdV~~~~~~~~~~r--~IVD~dFR~q 172 (306)
+...+...|+++||++..+..+ |...+.+ ++..|-.+.|.+ .+.+ ||||+.|=+.
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~i-----dg~~~~ylvDVGFG~~ 136 (278)
T 1w5r_A 76 HNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAV-----PGADGRYLVDVGFGGQ 136 (278)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECTTCCTTCCCCCEEEEEEEEEC-----SSCSCCEEECSCSCTT
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEeeCCCCCCCCCCCccEEEEEEE-----CCeEEEEEEecCCCcc
Confidence 4567889999999999998876 5555555 478899999988 3457 9999999774
No 6
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=91.27 E-value=0.34 Score=45.65 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCceeeeeecc--CCCCCC-CCCcceEEEEEecCCCCCceeEEEecCcccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTRW--QGSGKV-PGGDHEYIDVVNYNTAGSSERLIIDIDFRSY 172 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~W--~~s~~~-p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~q 172 (306)
+...+...|+++||++..+..+= ...+.. +++.|--|.|.+ .+.+||||+.|-+.
T Consensus 102 lN~lf~~~L~~lGf~v~~~~arV~~~~~~~~~~~~~H~~l~V~~-----~g~~ylvDVGFG~~ 159 (309)
T 3lnb_A 102 LNSLLYYFLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHH-----NKKDYVIDAGFASH 159 (309)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECSTTCEEEEEEEE-----TTEEEEECSCSTTC
T ss_pred HHHHHHHHHHHcCCeEEEEeEEEecCCCCCCCCCCccEEEEEEE-----CCeEEEEecCCCCc
Confidence 45788999999999999998872 333333 667999999998 46899999999874
No 7
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=90.81 E-value=0.34 Score=44.92 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCceeeeeecc-CCCCCCCCCcceEEEE-EecCCCCCceeEEEecCcc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTRW-QGSGKVPGGDHEYIDV-VNYNTAGSSERLIIDIDFR 170 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~W-~~s~~~p~G~hEyIdV-~~~~~~~~~~r~IVD~dFR 170 (306)
+...+...|+++||++..+..+= ...+..++..|--+.| .++ .+.+||||+.|=
T Consensus 85 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~H~~l~V~~l~----dg~~ylvDVGFG 140 (293)
T 3d9w_A 85 NAGLFAAALERLGFGVTGHTGRVTMGAGGLRPATHALLRVTTAD----DDRVWMCDVGFG 140 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEECTTCCSCCCEEEEEEEEECSS----CSCEEEECCSSS
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCccEEEEEEEcC----CCCeEEEecCCC
Confidence 45788999999999999988863 2223456789999999 772 257999999997
No 8
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=87.42 E-value=1.1 Score=41.21 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCceeeeeec-c-CCCCCC-CCCcceEEEEEecCCCCCceeEEEecCccccc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTR-W-QGSGKV-PGGDHEYIDVVNYNTAGSSERLIIDIDFRSYF 173 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~-W-~~s~~~-p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~qF 173 (306)
+...+...|+++||++..+..+ | ...+.+ +...|--+.|.+ .+.+||||+.|=+..
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~~H~~l~V~i-----dg~~ylvDVGFG~~~ 134 (295)
T 2ija_A 76 VNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTI-----DGRNYIVDAGSGRSY 134 (295)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSSCCEEEEEEEE-----TTEEEEECSCCCGGG
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEeeCCCCCCCCCCCcEEEEEEE-----CCceEEEeCCCCCcc
Confidence 4567889999999999998876 2 223333 358899999998 468999999998765
No 9
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=57.12 E-value=20 Score=35.11 Aligned_cols=56 Identities=9% Similarity=-0.019 Sum_probs=42.3
Q ss_pred cCcchhhHHHHHHHHHHhcCCceeeeeeccCCC----CCCCCCcceEEEEEecCCCCCceeEEEecC
Q 021888 106 DQCNASCIRFVLVKLLRLSGYDAAVCSTRWQGS----GKVPGGDHEYIDVVNYNTAGSSERLIIDID 168 (306)
Q Consensus 106 ~~~~~~~~rr~l~~~Lr~~GydAaiCkS~W~~s----~~~p~G~hEyIdV~~~~~~~~~~r~IVD~d 168 (306)
|.|.. +-..++..||++|..|..|--.-... ..+|+.+|-.+.|.+ .|..|++|+-
T Consensus 285 G~C~d--~a~Ll~AllRa~GIpA~~v~~~t~~~~~~~~~lp~~nh~i~~v~~-----~g~~y~lDat 344 (506)
T 3kd4_A 285 GTPLE--IAQLLNVMLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATV-----DGKDQYLSAS 344 (506)
T ss_dssp ECHHH--HHHHHHHHHHHTTCCEEEEEEEETTSCGGGCCSTTCCEEEEEEEE-----TTEEEEESSS
T ss_pred cchHH--HHHHHHHHHHHCCCCcEEEEEEcCCCCCccCCCCCCCEEEEEEEE-----CCEEEEEecC
Confidence 45532 45788999999999999887654322 367777999888887 4789999983
No 10
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=47.94 E-value=22 Score=31.59 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCCCCCceeEEEecCccccceeccCcHHHHHHHHhCCCcee
Q 021888 115 FVLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSYFEIARAVDSYDRILKSLPVVYV 194 (306)
Q Consensus 115 r~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~lL~~LP~vFV 194 (306)
+.|++.|+..||++.+.-+. . ..+.....+-+|+++..-.+. |- -....+.+++.+-..|+
T Consensus 35 ~~v~~al~~~g~~v~~i~~~--~-~~~~~l~~~~~D~v~~~~hg~-------------~g---e~~~~~~~le~~gip~~ 95 (317)
T 4eg0_A 35 RLVLQGLRDAGIDAHPFDPA--E-RPLSALKDEGFVRAFNALHGG-------------YG---ENGQIQGALDFYGIRYT 95 (317)
T ss_dssp HHHHHHHHHTTCEEEEECTT--T-SCTTHHHHTTCCEEEECCCSG-------------GG---TSSHHHHHHHHHTCEES
T ss_pred HHHHHHHHHCCCEEEEEeCC--C-chHHHhhhcCCCEEEEcCCCC-------------CC---chHHHHHHHHHcCCCee
Confidence 57899999999999888632 1 111111112244544211111 10 01234688888888899
Q ss_pred eChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCCh
Q 021888 195 GSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSL 228 (306)
Q Consensus 195 G~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~ 228 (306)
|+......+.. ==..+|+-|++.|++.|||+..
T Consensus 96 g~~~~~~~~~~-dK~~~k~~l~~~Gip~p~~~~~ 128 (317)
T 4eg0_A 96 GSGVLGSALGL-DKFRTKLVWQQTGVPTPPFETV 128 (317)
T ss_dssp SCCHHHHHHHH-CHHHHHHHHHHTTCCCCCEEEE
T ss_pred CcCHHHHHHHh-CHHHHHHHHHHCCcCCCCEEEE
Confidence 87644332211 0235677899999999999753
No 11
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=34.23 E-value=1.7e+02 Score=26.85 Aligned_cols=36 Identities=3% Similarity=-0.085 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEE
Q 021888 116 VLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDV 151 (306)
Q Consensus 116 ~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV 151 (306)
.+.+..+++||.+.++.+..+..........+|+.+
T Consensus 19 ~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~ 54 (425)
T 3vot_A 19 FIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPL 54 (425)
T ss_dssp HHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEECCCcccccCHhhccEEEec
Confidence 678889999999998877765433332333445444
No 12
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=31.01 E-value=78 Score=27.22 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCCCCCceeEEEecCccccceeccCcHHHHHHHHhCCCcee
Q 021888 115 FVLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNTAGSSERLIIDIDFRSYFEIARAVDSYDRILKSLPVVYV 194 (306)
Q Consensus 115 r~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~lL~~LP~vFV 194 (306)
+.++..|++.||++.++... +.. ......+-+|+++....+ .+. | ....+.+++.+-..|+
T Consensus 24 ~~l~~al~~~G~~v~~~~~~-~~~--~~~~~~~~~d~v~~~~~~---------~~~---e----~~~~~~~~e~~g~~~~ 84 (306)
T 1iow_A 24 AAVLAGLREGGIDAYPVDPK-EVD--VTQLKSMGFQKVFIALHG---------RGG---E----DGTLQGMLELMGLPYT 84 (306)
T ss_dssp HHHHHHHHHTTCEEEEECTT-TSC--GGGTTTTTEEEEEECCCS---------TTT---S----SSHHHHHHHHHTCCBS
T ss_pred HHHHHHHHHCCCeEEEEecC-chH--HHHhhccCCCEEEEcCCC---------CCC---c----chHHHHHHHHcCCCcc
Confidence 57899999999998887644 110 111111234555421111 110 0 1123556776665677
Q ss_pred eChHHHHHHHHHHHHHHHhhHhhCCCCCCCCCCh
Q 021888 195 GSLIRLKQFLQVMVDAARSSLSQNSMPLPPWRSL 228 (306)
Q Consensus 195 G~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~ 228 (306)
|.......+.. ==..+++-|++.|.++|||...
T Consensus 85 g~~~~~~~~~~-dK~~~~~~l~~~gi~~p~~~~~ 117 (306)
T 1iow_A 85 GSGVMASALSM-DKLRSKLLWQGAGLPVAPWVAL 117 (306)
T ss_dssp SCCHHHHHHHH-CHHHHHHHHHHTTCCBCCEEEE
T ss_pred CCCHHHHHHHc-CHHHHHHHHHHCCCCCCCeEEE
Confidence 76543322211 0134667789999999999754
No 13
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=26.65 E-value=1.6e+02 Score=26.76 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCceeeChHHHHHHHHHH-HHHHHhhHhhCCCCCCCCCC
Q 021888 181 SYDRILKSLPVVYVGSLIRLKQFLQVM-VDAARSSLSQNSMPLPPWRS 227 (306)
Q Consensus 181 ~Y~~lL~~LP~vFVG~~~rL~~iV~~m-c~Aak~S~k~~Gm~lPPWRk 227 (306)
..+.+|+.+=--|||+...--.+- | =..+|+-|++.|.++|||..
T Consensus 114 ~~q~~le~~gip~~G~~~~a~~~~--~DK~~~k~~l~~~Gip~p~~~~ 159 (357)
T 4fu0_A 114 TLQGIFELAGIPVVGCDTLSSALC--MDKDRAHKLVSLAGISVPKSVT 159 (357)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHH--HCHHHHHHHHHHTTCBCCCEEE
T ss_pred HHHHHHHHCCCcEECcCHHHHHHH--hCHHHHHHHHHHCCCCCCCEEe
Confidence 578899999889999865433221 1 24578889999999999965
No 14
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=25.48 E-value=2e+02 Score=25.80 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCceeeChHHHHHHHHHH-HHHHHhhHhhCCCCCCCCCCh
Q 021888 181 SYDRILKSLPVVYVGSLIRLKQFLQVM-VDAARSSLSQNSMPLPPWRSL 228 (306)
Q Consensus 181 ~Y~~lL~~LP~vFVG~~~rL~~iV~~m-c~Aak~S~k~~Gm~lPPWRk~ 228 (306)
..+.+|+.+---|+|+...-..+. + =..+|+-|++.|.++|||...
T Consensus 107 ~iq~~le~~gip~~g~~~~a~~~~--~dK~~~k~~l~~~Gip~p~~~~~ 153 (346)
T 3se7_A 107 AIQGLLELSGIPYVGCDIQSSALC--MDKSLTYLVARSAGIATPNFWTV 153 (346)
T ss_dssp HHHHHHHHHCCCBSSCCHHHHHHH--HSHHHHHHHHHHTTCBCCCEEEE
T ss_pred HHHHHHHHcCCCeeCcCHHHHHHH--hCHHHHHHHHHHcCcCcCCEEEE
Confidence 567888887777899854322221 1 235677899999999999754
No 15
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=21.89 E-value=87 Score=29.21 Aligned_cols=107 Identities=11% Similarity=0.148 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCceeeeeeccCCCCCCCCCcceEEEEEecCCCC--------------CceeEEE-ecCccccceecc
Q 021888 113 IRFVLVKLLRLSGYDAAVCSTRWQGSGKVPGGDHEYIDVVNYNTAG--------------SSERLII-DIDFRSYFEIAR 177 (306)
Q Consensus 113 ~rr~l~~~Lr~~GydAaiCkS~W~~s~~~p~G~hEyIdV~~~~~~~--------------~~~r~IV-D~dFR~qFeIAr 177 (306)
+-..++..++.+||.+.++.+.-+........-.+++.+-...... .+.-+|+ -.+|-++
T Consensus 17 ~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p~~g~~~e----- 91 (446)
T 3ouz_A 17 IALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSE----- 91 (446)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEECCSSTTTT-----
T ss_pred HHHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEECCccccc-----
Confidence 4467899999999998877654332211111123333331100000 0111121 1222111
Q ss_pred CcHHHHHHHHhCCCceeeChHHHHHHHHHHHHHHHhhHhhCCCCCCCCC
Q 021888 178 AVDSYDRILKSLPVVYVGSLIRLKQFLQVMVDAARSSLSQNSMPLPPWR 226 (306)
Q Consensus 178 pT~~Y~~lL~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWR 226 (306)
...+.+.+..+--.|+|+......+..- =..+|+-|++.|.++|||.
T Consensus 92 -~~~~~~~~~~~g~~~~g~~~~~~~~~~d-K~~~~~~l~~~Gip~p~~~ 138 (446)
T 3ouz_A 92 -NQNFVEICAKHNIKFIGPSVEAMNLMSD-KSKAKQVMQRAGVPVIPGS 138 (446)
T ss_dssp -CHHHHHHHHHTTCEESSCCHHHHHHHHS-HHHHHHHHHHTTCCBCSBC
T ss_pred -CHHHHHHHHHCCCceECcCHHHHHHhCC-HHHHHHHHHHcCCCcCCCc
Confidence 1456677777766788876543332211 1356778999999999996
No 16
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=21.48 E-value=27 Score=30.58 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccccCcCcchhhHHHHHHHHHHhcCCce-eeeeeccC----CCCCCCC--CcceEEEE
Q 021888 79 QYEMDLTSVVHSLILSIKETDLHAVKSDQCNASCIRFVLVKLLRLSGYDA-AVCSTRWQ----GSGKVPG--GDHEYIDV 151 (306)
Q Consensus 79 ~~E~~LL~~V~~~v~~~~e~~l~~~~~~~~~~~~~rr~l~~~Lr~~GydA-aiCkS~W~----~s~~~p~--G~hEyIdV 151 (306)
....++++.++++|.+.. . . -...|+..|+..||++ .--+=..+ +--++|. |.|-|..-
T Consensus 29 ~k~~~r~~~I~eiI~~~~---I---~--------TQeEL~~~L~~~Gi~viTQATvSRDIkELglvKv~~~~G~~~Y~lp 94 (180)
T 3v4g_A 29 EKQDNLVRAFKALLKEER---F---G--------SQGEIVEALKQEGFENINQSKVSRMLTKFGAVRTRNAKMEMVYCLP 94 (180)
T ss_dssp -CHHHHHHHHHHHHHHTC---C---C--------SHHHHHHHHHHTTCTTCCHHHHHHHHHHTTCEEEECTTSCEEEECC
T ss_pred ccHHHHHHHHHHHHhhCC---c---C--------CHHHHHHHHHHCCCcccCHHHHHHHHHHcCCEEeeCCCCCEEEEeC
Confidence 455677888888886421 1 0 1368999999999997 32222221 1224454 44544432
Q ss_pred EecC---CCCCceeEEEecCccccceeccCcHHHHHH----HHh--CCCceeeC
Q 021888 152 VNYN---TAGSSERLIIDIDFRSYFEIARAVDSYDRI----LKS--LPVVYVGS 196 (306)
Q Consensus 152 ~~~~---~~~~~~r~IVD~dFR~qFeIArpT~~Y~~l----L~~--LP~vFVG~ 196 (306)
.-.. -...-...||++++.+.|-|=+-.|-|+.. |+. +|+-.+|+
T Consensus 95 ~~~~~~~~~~~l~~~vvsv~~~~nlvVIkT~PG~A~~vA~~ID~~~~~e~IlGT 148 (180)
T 3v4g_A 95 TELGVPTVSSSLRELVLDVDHNQALVVIHTGPGAAQLIARMLDSLGKSEGILGV 148 (180)
T ss_dssp ------CTTCCTGGGEEEEEECSSCEEEEESTTCHHHHHHHHHHHCGGGTEEEE
T ss_pred CcccchhHHHHHHHHEEEEeecCCEEEEEeCCCcHHHHHHHHHhCCCCCCeEEE
Confidence 1110 001123479999999999987765555554 443 57623443
No 17
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=21.27 E-value=49 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=21.8
Q ss_pred ccccccCcC-cchhhHHHHHHHHHHhcCCcee
Q 021888 99 DLHAVKSDQ-CNASCIRFVLVKLLRLSGYDAA 129 (306)
Q Consensus 99 ~l~~~~~~~-~~~~~~rr~l~~~Lr~~GydAa 129 (306)
|+..++.++ .+++-+....+..|-.+||||.
T Consensus 30 d~vi~ngen~~~G~g~~~~~~~~l~~~G~D~~ 61 (252)
T 2z06_A 30 DLVIANGENAARGKGLDRRSYRLLREAGVDLV 61 (252)
T ss_dssp SEEEEECTTTTTTSSCCHHHHHHHHHHTCCEE
T ss_pred CEEEEeCCCccCCCCcCHHHHHHHHhCCCCEE
Confidence 555455443 2445566899999999999974
Done!