BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021890
(306 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225459201|ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|302142004|emb|CBI19207.3| unnamed protein product [Vitis vinifera]
Length = 294
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 163/310 (52%), Positives = 218/310 (70%), Gaps = 24/310 (7%)
Query: 1 MSLLRLYCCFPST-SYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFP 59
M+LLR + CFPST S+L +P Q+ H L ++ PL
Sbjct: 1 MALLR-HLCFPSTTSFLTPQPLQKPLHSI----LSFSSSFSPLSHALPLR---------- 45
Query: 60 ITPKKVSPFVFHFSATTQD---PFVDSSSAAAVNTEQ--REEEYSKTRLVAQNVPWTSTH 114
T ++++ +FH SA+ Q P S+A V+T Q EEE+S+TRL+AQN+PWT T
Sbjct: 46 -TTRRIN--LFHVSASAQTQSPPPASPSTAVTVDTPQNDEEEEFSRTRLIAQNIPWTCTA 102
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
+DIR+LFE++GTVLD+ELSMH+K RNRGLAF++MGSP+EA AAL+NLESYE EGR +KVN
Sbjct: 103 QDIRSLFEKYGTVLDVELSMHNKTRNRGLAFISMGSPEEALAALSNLESYELEGRAIKVN 162
Query: 175 YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR 234
YA +KK P P+Q KP +NLFIANL ++ARAKDLREFF S +VVSAEVIFH+NPR
Sbjct: 163 YANPQKKKPSSPIQHKPVTPYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPR 222
Query: 235 RSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDDLN 294
RS+GYGFVSF SK+ A+TA+S+FQG++FMGRPLRVA SR+F + + K +++ ++ LN
Sbjct: 223 RSSGYGFVSFGSKEEADTALSSFQGQMFMGRPLRVARSRRFVKRENKMSDQTEDVANPLN 282
Query: 295 INAEEADTAD 304
N+E++ D
Sbjct: 283 SNSEQSGEGD 292
>gi|147769276|emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]
Length = 294
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 217/308 (70%), Gaps = 20/308 (6%)
Query: 1 MSLLRLYCCFPST-SYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFP 59
M+LLR + CFPST S+L +P Q+ H L ++ PL +
Sbjct: 1 MALLR-HLCFPSTTSFLTXQPLQKPLHSI----LSFSSSFSPLSHALPLRXT-------- 47
Query: 60 ITPKKVSPFVFHFSATTQDPFVDS-SSAAAVNTEQ--REEEYSKTRLVAQNVPWTSTHED 116
++++ F SA TQ P S S+A V+T Q EEE+S+TRL+AQN+PWT T +D
Sbjct: 48 ---RRINLFHVSASAQTQSPPPASPSTAVTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQD 104
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
IR+LFE++GTVLD+ELSMH+K RNRGLAF++MGSP+EA AAL+NLESYE EGR +KVNYA
Sbjct: 105 IRSLFEKYGTVLDVELSMHNKTRNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYA 164
Query: 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
+KK P P+Q KP +NLFIANL ++ARAKDLREFF S +VVSAEVIFH+NPRRS
Sbjct: 165 NPQKKKPSSPIQHKPVTPYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRS 224
Query: 237 AGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDDLNIN 296
+GYGFVSF SK+ A+TA+S+FQG++FMGRPLRVA SR+F + + K +++ ++ LN N
Sbjct: 225 SGYGFVSFGSKEEADTALSSFQGQMFMGRPLRVARSRRFVKRENKMSDQTEDVANPLNSN 284
Query: 297 AEEADTAD 304
+E++ D
Sbjct: 285 SEQSGEGD 292
>gi|224082053|ref|XP_002306558.1| predicted protein [Populus trichocarpa]
gi|222856007|gb|EEE93554.1| predicted protein [Populus trichocarpa]
Length = 309
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 179/312 (57%), Positives = 215/312 (68%), Gaps = 13/312 (4%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI 60
M+ LRL CC S + P + P +S L + S H+ FPI
Sbjct: 1 MASLRLPCCLSSKT-----PSFSINPITPKLSSLHNHPNNFTFNTNTNNISLSHSLCFPI 55
Query: 61 -TPKKVSPFVFHFSATTQD-PFVDSSSAAAVNTE------QREEEYSKTRLVAQNVPWTS 112
K F+ HFS+TTQD P VDSSS V TE ++EEE+SKTRL A NVPW
Sbjct: 56 RNNNKFRHFLLHFSSTTQDHPVVDSSSLDDVVTEYQSKAEEKEEEFSKTRLFASNVPWNC 115
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIRALF++ GTV+D+ELSM+SK RNRGLAFVTMGSP+EA AALNNLESYEFEGRTLK
Sbjct: 116 TAEDIRALFQKFGTVVDVELSMYSKIRNRGLAFVTMGSPEEAVAALNNLESYEFEGRTLK 175
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
+NYAK KKK P PP PKP TFNLF+ANL FEA++KDL+EFFI+EG +VVSAE+IFHDN
Sbjct: 176 MNYAKAKKKKPSPPPPPKPGPTFNLFVANLPFEAKSKDLKEFFIAEGANVVSAEIIFHDN 235
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDD 292
PRR +GYGFV+FK+KK A+ AIS F K FMGR LRVA SRQF + + ++ SD TS +
Sbjct: 236 PRRPSGYGFVAFKTKKEADYAISTFSDKEFMGRQLRVARSRQFVKQRKEDAAQSDGTSGE 295
Query: 293 LNINAEEADTAD 304
L +ADTA+
Sbjct: 296 LESEKVQADTAN 307
>gi|356515764|ref|XP_003526568.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Glycine
max]
Length = 315
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 202/304 (66%), Gaps = 21/304 (6%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI 60
M+LLRL C PST+ L T+P S F L + Q N F LSS F +
Sbjct: 1 MALLRL-VCLPSTNQLSTQPHSH-SQSTSFSFLRKTPHSQPIN--FSLSSFHFPRLSLIT 56
Query: 61 TPKKVSPFVFHFSAT---TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDI 117
T + ++ H S + T++P V EEE+S+TRL+AQNVPWTST EDI
Sbjct: 57 TKQTLNLTPTHASTSEQQTEEPLVS------------EEEFSRTRLLAQNVPWTSTPEDI 104
Query: 118 RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
R LFE+HG VL++ELSM+ KNRNRGLAFV MGSP+EA ALNNLESYEFEGR +KVNYA+
Sbjct: 105 RTLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYAR 164
Query: 178 IKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
KK K PPV+PK TFNLF+ANLS+EA +KDL+EFF VVSAEV++ DNPRR
Sbjct: 165 PKKEKTAPPPVKPK-VVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRP 223
Query: 237 AGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDDLNIN 296
+GYGFVSFKSKK AE A++ FQGK+FMGRP+RV R+F + S++T +L++N
Sbjct: 224 SGYGFVSFKSKKEAEAALAEFQGKVFMGRPIRVDRGRRFVQQPGDGSAKSEDTPSELSVN 283
Query: 297 AEEA 300
EA
Sbjct: 284 GAEA 287
>gi|255645618|gb|ACU23303.1| unknown [Glycine max]
Length = 315
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 202/304 (66%), Gaps = 21/304 (6%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI 60
M+LLRL C PST+ L T+P S F L + Q N F LSS F +
Sbjct: 1 MALLRL-VCLPSTNQLSTQPHSH-SQSTSFSFLRKTPHSQPIN--FSLSSFHFPRLSLIT 56
Query: 61 TPKKVSPFVFHFSAT---TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDI 117
T + ++ H S + T++P V EEE+S+TRL+AQNVPWTST EDI
Sbjct: 57 TKQTLNLTPTHASTSEQQTEEPLVS------------EEEFSRTRLLAQNVPWTSTPEDI 104
Query: 118 RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
R LFE+HG VL++ELSM+ KNRNRGLAFV MGSP+EA ALNNLESYEFEGR +KVNYA+
Sbjct: 105 RTLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYAR 164
Query: 178 IKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
KK K PPV+PK TFNLF+ANLS+EA +KDL+EFF VVSAEV++ DNPRR
Sbjct: 165 PKKEKTAPPPVKPK-VVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRP 223
Query: 237 AGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDDLNIN 296
+GYGFVSFKSKK AE A++ FQGK+FMGRP+RV R+F + S++T +L++N
Sbjct: 224 SGYGFVSFKSKKEAEAALAEFQGKVFMGRPIRVDRGRRFVQQPGDGSAKSEDTPSELSVN 283
Query: 297 AEEA 300
EA
Sbjct: 284 GAEA 287
>gi|449436976|ref|XP_004136268.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449497014|ref|XP_004160289.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 300
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 150/245 (61%), Positives = 189/245 (77%), Gaps = 9/245 (3%)
Query: 48 LSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQN 107
LS+S H+ I K+ S FVF F++T+QD AV++ EE+S+TRL+AQN
Sbjct: 54 LSTSISHSPLISIRAKRTSTFVFQFASTSQD--------EAVSSPSDTEEFSQTRLLAQN 105
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
VPW ST EDIR+LFE++GTVLD+ELSM++K RNRGLAFVTMGSP+EA AALNNLESYEFE
Sbjct: 106 VPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFE 165
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GRTL++NYAK+KK+ P P TFNLF+ANL F+ARAKDL+EFF S +VVSA++
Sbjct: 166 GRTLRLNYAKLKKEKP-SPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQI 224
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSD 287
IF++NPRRS+GYGFV+FK+KK AE AIS FQGK FMGR LRVA S+QF +L ++E S+
Sbjct: 225 IFNENPRRSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSE 284
Query: 288 ETSDD 292
+ S D
Sbjct: 285 DASTD 289
>gi|356508060|ref|XP_003522779.1| PREDICTED: 30 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 297
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 135/206 (65%), Positives = 164/206 (79%), Gaps = 1/206 (0%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EEE+S+TRL+AQNVPWTST EDIR+LFE+HG VL +ELSM+ KNRNRGLAFV MGSP+EA
Sbjct: 65 EEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMYKKNRNRGLAFVEMGSPEEA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
ALNNLESYEFEGR +KVNYA+ KK+ PPV+PK TFNLF+ANLS+EA AKDL+EF
Sbjct: 125 LEALNNLESYEFEGRVIKVNYARPKKEKTPPPVKPK-VVTFNLFVANLSYEASAKDLKEF 183
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
F S VVSAEV++ DNPRR +GYGFVS+KSKK AE A++ FQGK+FMGRP+RV R+
Sbjct: 184 FDSGTGKVVSAEVVYRDNPRRPSGYGFVSYKSKKEAEAALAEFQGKIFMGRPIRVDRGRR 243
Query: 275 FARLQTKEGLHSDETSDDLNINAEEA 300
F + S++T DL++N EA
Sbjct: 244 FVQQPGDGSAKSEDTPSDLSVNGAEA 269
>gi|297808953|ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
lyrata]
gi|297318197|gb|EFH48619.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
lyrata]
Length = 300
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/234 (63%), Positives = 181/234 (77%), Gaps = 4/234 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
H TFP + P K F +FS TTQDP ++SSS++A TE EEE SKTRL+AQNVPWTS
Sbjct: 46 HYSTFPDSIPAKSRNFTTYFSTTTQDPVLESSSSSA--TEVVEEEISKTRLIAQNVPWTS 103
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G V+DIE+SMH K RNRGL F+ M SPDEA AL +LES ++EGR LK
Sbjct: 104 TPEDIRSLFEKYGNVIDIEMSMHKKERNRGLVFIEMASPDEAATALKSLESCDYEGRRLK 163
Query: 173 VNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF ++ +VVS EVIF +
Sbjct: 164 VDYAKTKKKKTYAPREKPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFQE 223
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLH 285
NPRRS+GYGFVSFK+KK AE A+ FQGK FMGRP+R+A S+QF +LQ KEGL
Sbjct: 224 NPRRSSGYGFVSFKTKKQAEAALIEFQGKDFMGRPIRLAKSKQFVKLQAKEGLQ 277
>gi|51969402|dbj|BAD43393.1| putative protein [Arabidopsis thaliana]
Length = 304
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/233 (62%), Positives = 182/233 (78%), Gaps = 3/233 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P +DSSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLDSSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES E+EGR LK
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLK 165
Query: 173 VNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF ++ +VVS EVIFH+
Sbjct: 166 VDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHE 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGL 284
NPRRS+GYGFVSFK+KK AE A+ FQGK F+GRP+R+A S+QF +LQ KEGL
Sbjct: 226 NPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGL 278
>gi|255545842|ref|XP_002513981.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547067|gb|EEF48564.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 305
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 215/313 (68%), Gaps = 19/313 (6%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQ--QQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTF 58
M+ LRL PS YL T+ + + +PF K Q N F LS S H
Sbjct: 1 MASLRLPGS-PSAPYLSTDNLTFLKTALSSPF----HKPFNQSNNNTFSLSISHSH---- 51
Query: 59 PITPKKVSPFVFHFSAT-TQDPFVDSSSAAAVNTEQREEE----YSKTRLVAQNVPWTST 113
I P K F+ HFSA+ TQDP ++ S TE+ +E+ +S TR++A NVPW T
Sbjct: 52 -IIPFKTKHFIVHFSASATQDPILEPQSLLESKTEKEQEQEQEEFSTTRVLASNVPWNCT 110
Query: 114 HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173
EDIRALFE+ GTV+D+ELSM++K RNRGLAFV+MGSP+EA A+ +L+SYEFEGR+LK+
Sbjct: 111 TEDIRALFEKFGTVVDVELSMYNKTRNRGLAFVSMGSPEEAATAIKSLDSYEFEGRSLKM 170
Query: 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF--HD 231
NYAK+KK+ P PP+ PKP TFNLF+ANL F+A+ DL+EFF SEG D+ SAE+++ HD
Sbjct: 171 NYAKLKKEKPLPPLPPKPVPTFNLFVANLPFDAKDNDLKEFFKSEGADIASAEIVYHNHD 230
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSD 291
PR+ +GYGFV+FK+KK A+ A+S F K+FMGRP+RVA S+QF R +EG SD+TS
Sbjct: 231 KPRKPSGYGFVAFKTKKEADAALSTFADKVFMGRPIRVARSKQFVRQPREEGQQSDDTST 290
Query: 292 DLNINAEEADTAD 304
DLNI E+ADT +
Sbjct: 291 DLNIGVEQADTTN 303
>gi|357465131|ref|XP_003602847.1| Multiple RNA-binding domain-containing protein [Medicago
truncatula]
gi|355491895|gb|AES73098.1| Multiple RNA-binding domain-containing protein [Medicago
truncatula]
Length = 290
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/271 (54%), Positives = 199/271 (73%), Gaps = 15/271 (5%)
Query: 38 QKQHY--NYFFP--LSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQ 93
+K+HY + FF L S H T IT K+ HF++T + S+S V T++
Sbjct: 31 KKKHYSPDPFFSSSLRLSVTHTPTLIITTKQ------HFNSTLR---FASTSEQQVTTQE 81
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
+ EE S TRL+AQNVPW+ST ED+R+LFE++G VL +ELSM++KNRNRGLAFV MGSP+E
Sbjct: 82 QTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEE 141
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A+ ALN+L+SYEF+GR + + YAK KK+ PPV+ KP T+NLF+AN +EAR+KD++E
Sbjct: 142 ASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPI-TYNLFVANFPYEARSKDVKE 200
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
FF S VVSAEVIFH+NPRR +GYGFVS+KSKK A+ A++ FQGK FMGRPLRVAPS+
Sbjct: 201 FFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRVAPSK 260
Query: 274 QFARLQTKEGLHSDETSDDLNINAEEADTAD 304
+F +L +E S++TS +L++N EAD D
Sbjct: 261 RFVQL-AEESAGSEDTSSELSVNEAEADKTD 290
>gi|22328520|ref|NP_192643.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|38603886|gb|AAR24688.1| At4g09040 [Arabidopsis thaliana]
gi|51968384|dbj|BAD42884.1| putative protein [Arabidopsis thaliana]
gi|51969486|dbj|BAD43435.1| putative protein [Arabidopsis thaliana]
gi|51969588|dbj|BAD43486.1| putative protein [Arabidopsis thaliana]
gi|51970774|dbj|BAD44079.1| putative protein [Arabidopsis thaliana]
gi|62319325|dbj|BAD94588.1| hypothetical protein [Arabidopsis thaliana]
gi|332657315|gb|AEE82715.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 304
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/233 (62%), Positives = 182/233 (78%), Gaps = 3/233 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P ++SSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES E+EGR LK
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLK 165
Query: 173 VNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF ++ +VVS EVIFH+
Sbjct: 166 VDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHE 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGL 284
NPRRS+GYGFVSFK+KK AE A+ FQGK F+GRP+R+A S+QF +LQ KEGL
Sbjct: 226 NPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGL 278
>gi|388510586|gb|AFK43359.1| unknown [Lotus japonicus]
Length = 305
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 159/312 (50%), Positives = 203/312 (65%), Gaps = 15/312 (4%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI 60
M+LLR+ C TS T Q+H PF SL + K++ N P S S H ++ +
Sbjct: 1 MALLRVLCL---TSSTTTTHISTQNHSPPFSSL-EIHHKKNNNK--PYSQSSSHNHSTKL 54
Query: 61 TPKKVSPFVF--------HFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
T + PF F H + F S++ E EE+S TRLVAQNVPWTS
Sbjct: 55 TFCHI-PFSFRLPCLSITHSTRANTLTFASSTTQQQQTEEATTEEFSTTRLVAQNVPWTS 113
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T ED+R+LFE++GTVL++ELSM++K R+RGLAFV M SP+EA ALN LESYEFEGR LK
Sbjct: 114 TPEDVRSLFERYGTVLEVELSMYNKTRSRGLAFVEMSSPEEALEALNKLESYEFEGRVLK 173
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
+NYA+ KKK PPV + TFNLF+ANLS+EA +KDLREFF S VVSAEV+FH++
Sbjct: 174 LNYARPKKKKAPPPVVQRKPVTFNLFVANLSYEATSKDLREFFDSGSSQVVSAEVVFHED 233
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDD 292
PR+S GYGFVSFKSKK A A+S FQ K FMGR LRVAPS++F + + ++TS +
Sbjct: 234 PRKSTGYGFVSFKSKKEANAALSEFQEKTFMGRSLRVAPSKRFVQPLEESSAKPEDTSTE 293
Query: 293 LNINAEEADTAD 304
L++N D AD
Sbjct: 294 LSVNGAGVDNAD 305
>gi|145332989|ref|NP_001078360.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332657316|gb|AEE82716.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 244
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 154/187 (82%), Gaps = 1/187 (0%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKTRL+AQNVPWTST EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL
Sbjct: 32 SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQ-PKPFATFNLFIANLSFEARAKDLREFFIS 217
+LES E+EGR LKV+YAK KKK + P + P P TFNLF+ANL+FEARAK L+EFF +
Sbjct: 92 KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
+ +VVS EVIFH+NPRRS+GYGFVSFK+KK AE A+ FQGK F+GRP+R+A S+QF +
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211
Query: 278 LQTKEGL 284
LQ KEGL
Sbjct: 212 LQAKEGL 218
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 127/180 (70%), Gaps = 3/180 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E E+ +TRLVAQN+PW ST +++RALF+ HG+V+ +ELSM+S ++NRGLAFVTMGS
Sbjct: 63 ETVEQVGPRTRLVAQNIPWDSTADEMRALFQTHGSVVGVELSMYSASKNRGLAFVTMGSE 122
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFATFNLFIANLSFEARAKD 210
++A AAL +L S R +KV++A+ +KK P P V P + +F+ NL++ R +
Sbjct: 123 EDALAALTHLNSTILNDRKIKVDFARPRKKQPKQPVVVSNPMEKYIVFVGNLTWRVRNRH 182
Query: 211 LREFFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LRE F S V+SAEVIFH PRRSAGY FVSF SK+ AE AISAF GK+ MGRP+ V
Sbjct: 183 LRELFAS-APGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKILMGRPINV 241
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 123/177 (69%), Gaps = 3/177 (1%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ KTRLVAQN+PW T +++RALFE HG+V+ +ELSM+S N+NRGLAFVTMGS +EA
Sbjct: 65 EQVGPKTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPF-PPVQPKPFATFNLFIANLSFEARAKDLRE 213
AAL +L S R +KV++A+ +KK P P V + +F+ NL++ R + LRE
Sbjct: 125 LAALTHLNSTILNDRKIKVDFARPRKKQPKQPAVVSDATEKYVVFVGNLTWRVRNRHLRE 184
Query: 214 FFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F S VVSAEVIFH PRRSAGY FVSF SK+ A AISAF GK+ MGRP+ V
Sbjct: 185 LFASAP-GVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINV 240
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 137/215 (63%), Gaps = 16/215 (7%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ KTRLVAQN+PW T +++RALFE HG+V+ +ELSM+S N+NRGLAFVTMGS +EA
Sbjct: 65 EQVGPKTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPF-PPVQPKPFATFNLFIANLSFEARAKDLRE 213
AAL +L S R +KV++A+ +KK P P V + +F+ NL++ R + LRE
Sbjct: 125 LAALTHLNSTILNDRKIKVDFARPRKKQPKQPAVVSDDTEKYVVFVGNLTWRVRNRHLRE 184
Query: 214 FFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA-- 270
F S VVSAEVIFH PRRSAGY FVSF SK+ A AISAF GK+ MGRP+ V
Sbjct: 185 LFASAP-GVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINVMFK 243
Query: 271 --------PSRQFARLQTKEGLHSDETSDDLNINA 297
PS + + + SD+ SD L++N
Sbjct: 244 DENGEKNEPSSVPKKAEVEP---SDDQSDKLSMNC 275
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 130/201 (64%), Gaps = 8/201 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+TRL+AQN+PW T +D+RALF +HG+V+D+ELSM++ RNRGLAFVTMGS +EA +ALN
Sbjct: 72 RTRLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNSTRNRGLAFVTMGSEEEALSALN 131
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+L S RT+KV++ + +KK P P P ++F+ NL++ R++ LRE F S
Sbjct: 132 HLNSTTLNDRTIKVDFTRSRKKQYVVPSAPMP--KHSVFVGNLTWRVRSRHLRELFASTP 189
Query: 220 WDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278
V S EV+FH +PRRSAGYGFVSF SK+ AE AIS F G MGR + V F
Sbjct: 190 -GVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINV----MFKDD 244
Query: 279 QTKEGLHSDETSDDLNINAEE 299
K+ + T +DL + E
Sbjct: 245 NAKKNKSAAPTEEDLKAESSE 265
>gi|7267547|emb|CAB78028.1| putative protein [Arabidopsis thaliana]
Length = 225
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/141 (63%), Positives = 113/141 (80%), Gaps = 1/141 (0%)
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ-PKPFATFNLFIANLS 203
F+ M SP+EA+ A +LESYE+EGR LKV+YAK KKK + P + P P TFNLF+ANL+
Sbjct: 59 FIEMASPEEASTAFISLESYEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLA 118
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
FEARAK L+EFF ++ +VVS EVIFH+NPRRS+GYGFVSFK+KK AE A+ FQGK F+
Sbjct: 119 FEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFL 178
Query: 264 GRPLRVAPSRQFARLQTKEGL 284
GRP+R+A S+QF +LQ KEGL
Sbjct: 179 GRPIRLAKSKQFVKLQAKEGL 199
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 136/226 (60%), Gaps = 10/226 (4%)
Query: 50 SSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYS----KTRLVA 105
SSP + P TP +SP F+ S S+ V E+ EE K +L
Sbjct: 36 SSPLLSLN-PTTP--ISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYI 92
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + DI+ LF Q GTV D+E+ R+RG AFVTM SPDEA AA+ +S E
Sbjct: 93 FNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQE 152
Query: 166 FEGRTLKVNYAK-IKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFISEGWDVV 223
GR +KV +AK +KK P P P P T N L+++NL+++ R+ +LR+FF SE ++ +
Sbjct: 153 ISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFF-SENFNPI 211
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+A V+F RSAGYGFVSF +++ A+TA+S+ +GK MGRPLR+
Sbjct: 212 AARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRL 257
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
+L N+ W ++R F ++ + + S R+ G FV+ + +EA AL++
Sbjct: 185 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 244
Query: 161 LESYEFEGRTLKVNYAK 177
LE E GR L++ +++
Sbjct: 245 LEGKELMGRPLRLKFSE 261
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 136/226 (60%), Gaps = 10/226 (4%)
Query: 50 SSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYS----KTRLVA 105
SSP + P TP +SP F+ S S+ V E+ EE K +L
Sbjct: 42 SSPLLSLN-PTTP--ISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYI 98
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + DI+ LF Q GTV D+E+ R+RG AFVTM SPDEA AA+ +S E
Sbjct: 99 FNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQE 158
Query: 166 FEGRTLKVNYAK-IKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFISEGWDVV 223
GR +KV +AK +KK P P P P T N L+++NL+++ R+ +LR+FF SE ++ +
Sbjct: 159 ISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFF-SENFNPI 217
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+A V+F RSAGYGFVSF +++ A+TA+S+ +GK MGRPLR+
Sbjct: 218 AARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRL 263
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
+L N+ W ++R F ++ + + S R+ G FV+ + +EA AL++
Sbjct: 191 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 250
Query: 161 LESYEFEGRTLKVNYAK 177
LE E GR L++ +++
Sbjct: 251 LEGKELMGRPLRLKFSE 267
>gi|51968436|dbj|BAD42910.1| putative protein [Arabidopsis thaliana]
Length = 171
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 96/125 (76%), Gaps = 2/125 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P ++SSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES E+EGR LK
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLK 165
Query: 173 VNYAK 177
V+YAK
Sbjct: 166 VDYAK 170
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 11/208 (5%)
Query: 68 FVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTV 127
F +T Q+ V+ + E+ +E K +L N+PW+ + DI+ LF Q GTV
Sbjct: 65 LCFQLCSTVQEVTVEITP----EEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTV 120
Query: 128 LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV 187
D+E+ R+RG AFVTM + +EA AA++ S E GR ++V +AK ++ P P +
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRL 180
Query: 188 QPKPF------ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
P L+I+NL+++ R LREFF S + VS+ V+F RS+GYGF
Sbjct: 181 PGTPADIPAGETRHKLYISNLAWKVRGSHLREFF-STNCNPVSSRVVFDGPAGRSSGYGF 239
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
VSF +++ A AISAF GK MGRP+R+
Sbjct: 240 VSFATREEAVAAISAFSGKELMGRPIRL 267
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 15/226 (6%)
Query: 46 FPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVA 105
PL S F +T +K+S F +T Q+ + E+ +E K +L
Sbjct: 40 IPLLSHNFSLSNIHLTARKLS---FERFSTAQEIMIP---------EETQETTQKRKLYV 87
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + DI+ LF Q GTV D+E+ R+RG AFVT+ S +EA AA++ L+S+E
Sbjct: 88 FNLPWSLSVVDIKNLFGQCGTVTDVEIIKQKNGRSRGFAFVTLASGEEAQAAIDKLDSHE 147
Query: 166 FEGRTLKVNYAK-IKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVV 223
GR ++V +AK +K +P P T ++++NL+++ R+ LREFF S + V
Sbjct: 148 VSGRIIRVEFAKRLKPPSPPSPTGTSARETRHKIYVSNLAWKVRSTHLREFF-STNFSPV 206
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
S+ V+F RS+GYGFVSF +++ AE AISA GK MGRPLR+
Sbjct: 207 SSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDGKELMGRPLRL 252
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 110/184 (59%), Gaps = 7/184 (3%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E+ +E K +L N+PW+ + DI+ LF Q GTV D+E+ R+RG AFVTM +
Sbjct: 85 EEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKNGRSRGFAFVTMTTG 144
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF------ATFNLFIANLSFE 205
+EA AA++ S E GR ++V +AK ++ P P + P L+I+NL+++
Sbjct: 145 EEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRLPGTPADIPAGETRHKLYISNLAWK 204
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
R LREFF S + VS+ V+F RS+GYGFVSF +++ A AISAF GK MGR
Sbjct: 205 VRGSHLREFF-STNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISAFSGKELMGR 263
Query: 266 PLRV 269
P+R+
Sbjct: 264 PIRL 267
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 11/237 (4%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S ++ D ++ TE+ + K +L N+PW+ + DI LF Q GTV ++E+
Sbjct: 67 SVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI 126
Query: 133 SMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA-KIKKKNPFPPVQ--- 188
+NRG AFVTM S +EA AA++ ++++ GR + V++A + KK P P
Sbjct: 127 IRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPS 186
Query: 189 PKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
P P T L+++NL+++AR+ LRE F + ++ VSA V+F D RS+GYGFVSF ++
Sbjct: 187 PAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATR 246
Query: 248 KVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDDLNINAEEADTAD 304
+ AE AI+ GK MGRP+ + +F+ E D S + N +E+ DT +
Sbjct: 247 EEAENAITKLNGKEIMGRPITL----KFSLRSASESEDGD--SVEANNASEDGDTVE 297
>gi|297823333|ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
gi|297325388|gb|EFH55808.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 124/220 (56%), Gaps = 13/220 (5%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
TE+ ++ K +L N+PW+ + DI LF Q GTV ++E+ +NRG AFVTM S
Sbjct: 85 TEETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMAS 144
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF------NLFIANLSF 204
+EA AA++ ++ + GR + VN+A+ KK P P + L+++NL++
Sbjct: 145 GEEAQAAIDKFDTSQVSGRIISVNFARRFKK-PTPKPPNDLPSPPPGDTRHKLYVSNLAW 203
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+AR+ LRE F + ++ VSA V+F D RS+GYGFVSF +++ AE AI+ GK MG
Sbjct: 204 KARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGFVSFATREEAEDAIAKLDGKEIMG 263
Query: 265 RPLRVAPSRQFARLQTKEGLHSDETSDDLNINAEEADTAD 304
RP+ + +F+ E D D N +E+ DT +
Sbjct: 264 RPIIL----KFSLRSASESEDGDTVGD--NNTSEDGDTVE 297
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 12/207 (5%)
Query: 68 FVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTV 127
F F ++ Q+ V++ EQ +E K +L N+PW+ + DI+ LF + GTV
Sbjct: 62 FSFELCSSVQEIEVEA------KPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTV 115
Query: 128 LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV 187
D+E+ R+RG AFVTM S +EA A + +SYE GR ++V +AK KK PP
Sbjct: 116 TDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPPPP 175
Query: 188 QPKPFATF-----NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV 242
P L+++NL+++ R+ LREFF S ++ VS V+F RS GYGF
Sbjct: 176 PPPAGPPAGETRHKLYVSNLAWKVRSTHLREFF-SSNFNPVSVRVVFDSPSGRSGGYGFA 234
Query: 243 SFKSKKVAETAISAFQGKLFMGRPLRV 269
SF +K+ AE AISA GK MGRP+ +
Sbjct: 235 SFATKEEAEAAISALDGKELMGRPVHL 261
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ NL + D++ F E V E+I + R S GY FV+ S + A+ +
Sbjct: 90 KLFVLNLPWSLSVVDIKNLF-GECGTVTDVEIIKQKDGR-SRGYAFVTMDSGEEAQAVVE 147
Query: 256 AFQGKLFMGRPLRVAPSRQFAR 277
F GR +RV +++F +
Sbjct: 148 KFDSYELSGRIIRVEFAKRFKK 169
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 117/209 (55%), Gaps = 12/209 (5%)
Query: 66 SPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHG 125
+ F F ++ Q+ V++ EQ +E K +L N+PW+ + DI+ LF + G
Sbjct: 30 TKFSFELCSSVQEIEVEA------KPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECG 83
Query: 126 TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP 185
TV D+E+ R+RG AFVTM S +EA A + +SYE GR ++V +AK KK P
Sbjct: 84 TVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPP 143
Query: 186 PVQPKPFATF-----NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
P P L+++NL+++ R+ LREFF S ++ VS V+F RS GYG
Sbjct: 144 PPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREFF-SSNFNPVSVRVVFDSPSGRSGGYG 202
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F SF +K+ AE AISA GK MGRP+ +
Sbjct: 203 FASFATKEEAEAAISALDGKELMGRPVHL 231
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 185 PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
P +P LF+ NL + D++ F E V E+I + R S GY FV+
Sbjct: 49 PEQTQEPNQKRKLFVLNLPWSLSVVDIKNLF-GECGTVTDVEIIKQKDGR-SRGYAFVTM 106
Query: 245 KSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
S + A+ + F GR +RV +++F +
Sbjct: 107 DSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKK 139
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 114/203 (56%), Gaps = 7/203 (3%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ W+ T DI LF Q GTV D+E+ R++G AFVTM S +EA AA++
Sbjct: 81 KLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKF 140
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---LFIANLSFEARAKDLREFFISE 218
+SYE GR ++V AK KK P PP P P ++ +NL+++AR+ LR+ F
Sbjct: 141 DSYELSGRIIRVELAKRFKKPPSPPPPPGPRPGETRHVIYASNLAWKARSTHLRQLFAEN 200
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278
SA V+F RSAGYGFVSF +K+ AE AIS GK MGRPLR+ +F+
Sbjct: 201 FKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRL----KFSEK 256
Query: 279 QTKEGLHSDETSDDLNINAEEAD 301
+ K G DE D + E+ D
Sbjct: 257 KDKAGREKDEDQDKDAGSEEDED 279
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 108/190 (56%), Gaps = 7/190 (3%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ W+ T DI LF Q GTV D+E+ R++G AFVTM S +EA AA++
Sbjct: 74 KLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKF 133
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---LFIANLSFEARAKDLREFFISE 218
+SYE GR ++V AK KK P P P P ++ +NL+++AR+ LR+ F
Sbjct: 134 DSYELSGRIIRVELAKRLKKPPSLPPPPGPRPGETRHVIYASNLAWKARSTHLRQVFTEN 193
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278
SA V+F RSAGYGFVSF +++ AE AIS GK MGRPLR+ +F+
Sbjct: 194 FKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAISTVDGKELMGRPLRL----KFSEK 249
Query: 279 QTKEGLHSDE 288
+ G +DE
Sbjct: 250 NKEAGSQNDE 259
>gi|326507746|dbj|BAJ86616.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 192
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 85/132 (64%), Gaps = 4/132 (3%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
+NRGLAFVTMGS +EA +AL NL RT+KV++AK KKK P P P +F
Sbjct: 33 KNRGLAFVTMGSEEEALSALKNLNLSTLNDRTIKVDFAKPKKKQPAVPSA--PVEKNVVF 90
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAF 257
+ NL++ R++ LRE F S V S EVIFH PRRSAGYGFVSF SK+ AE AIS F
Sbjct: 91 VGNLTWRVRSRHLRELFASTP-GVQSVEVIFHTTTPRRSAGYGFVSFSSKEEAEAAISTF 149
Query: 258 QGKLFMGRPLRV 269
GK MGR + V
Sbjct: 150 NGKELMGRSINV 161
>gi|7267548|emb|CAB78029.1| putative protein [Arabidopsis thaliana]
Length = 211
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 84/111 (75%), Gaps = 2/111 (1%)
Query: 54 HAYTFPIT-PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
HA TFP + P K +FS TTQ+P ++SSS+++ E EEE SKTRL+AQNVPWTS
Sbjct: 47 HA-TFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTS 105
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES 163
T EDIR+LFE++G+V+DIE+SMH K RNRGL F+ M SP+EA AL +LES
Sbjct: 106 TPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLES 156
>gi|242076980|ref|XP_002448426.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
gi|241939609|gb|EES12754.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
Length = 278
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 107/171 (62%), Gaps = 9/171 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ +L N+PW+ +I LF QHGTV D+E+ RNRG AFVTM + +EA AA
Sbjct: 74 RRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGRNRGFAFVTMSTTEEAAAAAE 133
Query: 160 NLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
L S++ GRT+KV +++ +K P PP+ L+++NL ++ARA +++EFF
Sbjct: 134 KLNSHDVMGRTIKVEFSRSFRKPAPLPPI----IERHKLYVSNLPWKARAPNVKEFFAK- 188
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++ +SA VIF + ++AGY FVSF +K+ AE A++ GK MGRP+R+
Sbjct: 189 -FNPLSANVIFDNG--KAAGYCFVSFGTKEEAEAALTELDGKELMGRPVRL 236
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 2/178 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ ++ Y K +L N+PW+ + DI+ LF Q GTV D+E+ R +G AFVTM S
Sbjct: 77 QDQQATYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASG 136
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--ATFNLFIANLSFEARAK 209
+EA AA++ ++ E GR L+V AK KK P P A ++ +NL+++ R+
Sbjct: 137 EEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRST 196
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
LREFF +SA ++F ++ GYGF+S+ +K+ AE AISA GK MGR L
Sbjct: 197 HLREFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISALDGKELMGRSL 254
>gi|357165665|ref|XP_003580455.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 1
[Brachypodium distachyon]
gi|357165668|ref|XP_003580456.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 2
[Brachypodium distachyon]
Length = 286
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 136/240 (56%), Gaps = 9/240 (3%)
Query: 29 PFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAA 88
P + LQ+ + H+ PL+ SP Y P ++ S+ + D+ + A
Sbjct: 11 PAAAALQRPRITHFAALLPLTRSPRQPY--PRLRLRLPAPAVAASSAPEAQVADAEAVAE 68
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E++EEE + VA N+PWT +I LF + G V D+++ R RG AFVTM
Sbjct: 69 GGEEEKEEERRRNLYVA-NLPWTLPAVEIEKLFAECGVVKDVQVIKMKDGRKRGFAFVTM 127
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP-FATFNLFIANLSFEAR 207
GS +EA AA+ SY+ GR +KV ++K +K P PP P FA L+++NL+++AR
Sbjct: 128 GSAEEAAAAVEKFNSYDVMGRIIKVEFSKTFRK-PAPPRIPSTIFARHKLYVSNLAWKAR 186
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
+ D++ FF ++ +SA V+F D ++SAGYGFVSF++K+ AE A+S GK + RP+
Sbjct: 187 SSDIKAFFSQ--FNPISANVVFDD--KKSAGYGFVSFQTKEDAEAALSELNGKELLERPV 242
>gi|226499642|ref|NP_001147738.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195613392|gb|ACG28526.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414585685|tpg|DAA36256.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 272
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 113/184 (61%), Gaps = 4/184 (2%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
A A + E+ + +L N+PW+ +I LF QHGTV D+E+ RNRG AF
Sbjct: 51 AQAAPVAEDEQGEKRRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGRNRGFAF 110
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
VTM + +EA AA + L S++ GRT+KV ++K ++ PP L+++NL ++
Sbjct: 111 VTMSTAEEAAAAADKLNSHDVMGRTIKVEFSKSFRRPAPPPPPGTIIERHKLYVSNLPWK 170
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
ARA +++EFF + ++ +SA VIF + ++AGYGFVSF +K+ AE A++ GK +GR
Sbjct: 171 ARAPNVKEFFAN--FNPLSANVIFDNG--KAAGYGFVSFGTKEEAEAALTELDGKELLGR 226
Query: 266 PLRV 269
P+R+
Sbjct: 227 PVRL 230
>gi|357141664|ref|XP_003572305.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like
[Brachypodium distachyon]
Length = 250
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 109/206 (52%), Gaps = 42/206 (20%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+TRL+A N+PW T +D+RALFE+ G+V+ +E LN
Sbjct: 85 RTRLIAMNIPWDYTPDDMRALFEKQGSVVSVE-------------------------TLN 119
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ RT+KV++AK +KK P P P +F+ NL++ R++ LRE F S
Sbjct: 120 D--------RTIKVDFAKPRKKQPTVPSAPMQNKHI-VFVGNLTWRVRSRHLRELFASTP 170
Query: 220 WDVVSAEVIFHDN-PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278
V S EVIF PRRSAGY FVSF SK+ AE AIS F GK +GRP+ V + A+
Sbjct: 171 -GVQSVEVIFQTTTPRRSAGYAFVSFSSKEEAEAAISTFNGKELLGRPINVTFKEETAK- 228
Query: 279 QTKEGLHSDETSDDLNINAEEADTAD 304
K HS+E N+ AE ++ +D
Sbjct: 229 -KKISSHSEEE----NLEAESSEQSD 249
>gi|388504962|gb|AFK40547.1| unknown [Lotus japonicus]
Length = 285
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 100/178 (56%), Gaps = 2/178 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ ++ Y K +L +PW+ + DI+ LF Q GTV D+E+ R +G AFVTM S
Sbjct: 77 QDQQATYIKKKLYVFTLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASG 136
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--ATFNLFIANLSFEARAK 209
+EA AA++ ++ E GR L+V AK KK P P A ++ +NL+++ R+
Sbjct: 137 EEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRST 196
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
LREFF +SA ++F + GYGF+S+ +K+ AE AISA GK MGR L
Sbjct: 197 HLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
>gi|326503644|dbj|BAJ86328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 11/216 (5%)
Query: 87 AAVNTEQREEEYSKTR--LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
AA + +EE +TR L N+P+T + + LF + G V D+E+ R RG A
Sbjct: 63 AAEPAAEGDEELGETRRKLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKDGRKRGFA 122
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-ATFNLFIANLS 203
FVTM + +EA A + + ++ GR +KV ++K +K P PP P A + L+++NL+
Sbjct: 123 FVTMATAEEAAAVVEKFDGHDINGRVIKVEFSKSFRK-PAPPSSPDTIVAKYKLYVSNLA 181
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
++AR+ DL+EFF ++ VSA ++F D R+SAGYGFVSF +K+ AE A+S GK M
Sbjct: 182 WKARSADLKEFFSQ--FNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALSELNGKELM 237
Query: 264 GRP--LRVAPSRQFARLQTK-EGLHSDETSDDLNIN 296
RP LR ++ + + EG+ D+ ++ + +
Sbjct: 238 ERPVILRWREDKETVKADGEVEGVKVDDQAEGVVVG 273
>gi|326496905|dbj|BAJ98479.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 123/210 (58%), Gaps = 11/210 (5%)
Query: 93 QREEEYSKTR--LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
+ +EE +TR L N+P+T + + LF + G V D+E+ R RG AFVTM +
Sbjct: 50 EGDEELGETRRKLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKDGRKRGFAFVTMAT 109
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-ATFNLFIANLSFEARAK 209
+EA A + + ++ GR +KV ++K +K P PP P A + L+++NL+++AR+
Sbjct: 110 AEEAAAVVEKFDGHDINGRVIKVEFSKSFRK-PAPPSSPDTIVAKYKLYVSNLAWKARSA 168
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP--L 267
DL+EFF ++ VSA ++F D R+SAGYGFVSF +K+ AE A+S GK M RP L
Sbjct: 169 DLKEFFSQ--FNPVSANIVFDD--RKSAGYGFVSFGTKEEAEAALSELNGKELMERPVIL 224
Query: 268 RVAPSRQFARLQTK-EGLHSDETSDDLNIN 296
R ++ + + EG+ D+ ++ + +
Sbjct: 225 RWREDKETVKADGEVEGVKVDDQAEGVVVG 254
>gi|357485175|ref|XP_003612875.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355514210|gb|AES95833.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 324
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 3/195 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K L+ N+PW+ + DI+ LF Q GTV+D+E+ + +G FVTM S + A AA++
Sbjct: 95 KKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVD 154
Query: 160 NLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
+ E GR L+V +AK KK P PP A + ++ +NL+++AR+ LR+ F
Sbjct: 155 KFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTEN 214
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278
VSA V+F +SAGYGFVS+ +++ AE AISA QGK +GRPL V S + +
Sbjct: 215 FKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERKVKE 274
Query: 279 QTKEGLHSDETSDDL 293
E + +E DD+
Sbjct: 275 AGSEEV--EEKVDDV 287
>gi|388503916|gb|AFK40024.1| unknown [Medicago truncatula]
Length = 324
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 3/195 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K L+ N+PW+ + DI+ LF Q GTV+D+E+ + +G FVTM S + A AA++
Sbjct: 95 KKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVD 154
Query: 160 NLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
+ E GR L+V +AK KK P PP A + ++ +NL+++AR+ LR+ F
Sbjct: 155 KFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTEN 214
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278
VSA V+F +SAGYGFVS+ +++ AE AI A QGK +GRPL V S + +
Sbjct: 215 FKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAIFALQGKELLGRPLLVKISERKVKE 274
Query: 279 QTKEGLHSDETSDDL 293
E + +E DD+
Sbjct: 275 AGSEEV--EEKVDDV 287
>gi|238010966|gb|ACR36518.1| unknown [Zea mays]
gi|414869197|tpg|DAA47754.1| TPA: hypothetical protein ZEAMMB73_464077 [Zea mays]
Length = 169
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 69/92 (75%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ KTRLVAQN+PW T +++RALFE HG+V+ +ELSM+S N+NRGLAFVTMGS +EA
Sbjct: 65 EQVGPKTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPP 186
AAL +L S R +KV++A+ +KK P P
Sbjct: 125 LAALTHLNSTILNDRKIKVDFARPRKKQPKQP 156
>gi|125549538|gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indica Group]
Length = 290
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 118/205 (57%), Gaps = 5/205 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ +L N+PW+ +I LF Q G V D+E+ + +G AFVTM + +EA AA+
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L S + GRT++V ++K +K P PP L+++NL ++ARA +++EF
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRK-PAPPPPGTILERHKLYVSNLPWKARAPNMKEF--CSK 195
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
++ +SA+V+F +SAGYGFVSF +K+ AE A++ GK MGRP+R+ RQ
Sbjct: 196 FNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLR-WRQSVD-D 253
Query: 280 TKEGLHSDETSDDLNINAEEADTAD 304
+ + + +D +D+N++ E D
Sbjct: 254 SDDSVKADGEIEDVNVDGEAEGVTD 278
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
EEE +T+L N+PWT + + HGTV +E+ ++ K R+RG AFVTM +P+
Sbjct: 38 EEEQFETKLYVGNLPWTCDSAQLAEICSDHGTVDVVEV-IYDKISGRSRGFAFVTMATPE 96
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDL 211
+A A +N L+ + GR LKVNY + +K P +P N LF+ NLS+ L
Sbjct: 97 DAQAVINALDGTDMGGRPLKVNYPQSQKDKPRVERSERPRDDANKLFVGNLSWGCDEAAL 156
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
FF SE VV A+V+F + RS G+GFV+ +S A AI G GR LRV
Sbjct: 157 YSFF-SEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIENLDGAELDGRRLRV 213
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+ W + + F ++GTV+D ++ R+RG FVTM S A AA+ N
Sbjct: 141 KLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIEN 200
Query: 161 LESYEFEGRTLKVNYAKIK 179
L+ E +GR L+VN A K
Sbjct: 201 LDGAELDGRRLRVNLAGEK 219
>gi|116311029|emb|CAH67960.1| OSIGBa0142I02-OSIGBa0101B20.3 [Oryza sativa Indica Group]
Length = 291
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 116/205 (56%), Gaps = 4/205 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ +L N+PW+ +I LF Q G V D+E+ + +G AFVTM + +EA AA+
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L S + GRT++V ++K +K PP L+++NL ++ARA +++EFF
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILERHKLYVSNLPWKARAPNMKEFF--SK 196
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
++ +SA+V+F +SAGYGFVSF +K+ AE A++ GK MGRP+R+ +
Sbjct: 197 FNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWRQSVD--D 254
Query: 280 TKEGLHSDETSDDLNINAEEADTAD 304
+ + + +D +D N++ E D
Sbjct: 255 SDDSVKADGEIEDANVDGEAEGVTD 279
>gi|115460220|ref|NP_001053710.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|38346724|emb|CAE04874.2| OSJNBa0086O06.22 [Oryza sativa Japonica Group]
gi|113565281|dbj|BAF15624.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|215706340|dbj|BAG93196.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 291
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 116/205 (56%), Gaps = 4/205 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ +L N+PW+ +I LF Q G V D+E+ + +G AFVTM + +EA AA+
Sbjct: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L S + GRT++V ++K +K PP L+++NL ++ARA +++EFF
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILERHKLYVSNLPWKARAPNMKEFF--SK 196
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
++ +SA+V+F +SAGYGFVSF +K+ AE A++ GK MGRP+R+ +
Sbjct: 197 FNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWRQSVD--D 254
Query: 280 TKEGLHSDETSDDLNINAEEADTAD 304
+ + + +D +D N++ E D
Sbjct: 255 SDDSVKADGEIEDANVDGEAEGVTD 279
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 104/181 (57%), Gaps = 10/181 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
EE + +L N+P T T++++RA+F HGTVL ++ M+ K R+R FVTM S +E
Sbjct: 64 EELATRKLYVGNIPRTVTNDELRAMFADHGTVLRADV-MYDKYSGRSRRFGFVTMSSVEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPF---ATFNLFIANLSFEARA 208
A AA+ +L E GR +KVN + + +P P +P+P + + +++ NL+
Sbjct: 123 ANAAIESLNETEVGGRKIKVNVTESFLPNIDPSAP-EPEPAFVDSQYKVYVGNLAKTVTT 181
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
+ L+ FF SE +V+SA V +S GYGFV+F S++ E A+S F G+P+R
Sbjct: 182 EVLKNFF-SEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTELEGQPIR 240
Query: 269 V 269
V
Sbjct: 241 V 241
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ T T E ++ F + G VL +S + +++G FVT S +E AA
Sbjct: 166 SQYKVYVGNLAKTVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAA 225
Query: 158 LNNLESYEFEGRTLKVNYA 176
++ + E EG+ ++VN A
Sbjct: 226 VSTFNNTELEGQPIRVNRA 244
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 10/180 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T E++ +F + G V D ++ ++ K NR+RG AFVTM + +EA A+
Sbjct: 111 RLFVGNLPYTYTSEELAQVFAEAGRVDDAQI-IYDKVTNRSRGFAFVTMATAEEAAKAIQ 169
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPV----QPKPFATFNLFIANLSFEARAKDLREFF 215
+ GRT +VNY ++ + V + + T+ ++ NL + RA LR F
Sbjct: 170 MFDGALLGGRTARVNYPEVPRGGERRTVTMAGRRRDDGTYKIYAGNLGWGVRADTLRNVF 229
Query: 216 ISEG-WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
EG ++ A VIF RS G+GFVSF++ + A+ A+ A G GRPLR++ + Q
Sbjct: 230 --EGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSLAEQ 287
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V R + ++ A N+ W + +R +FE +LD + + R+RG FV+
Sbjct: 197 VTMAGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 256
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+ ++A AAL L+ E EGR L+++ A+
Sbjct: 257 FRTAEDAQAALEALDGVELEGRPLRLSLAE 286
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 7/194 (3%)
Query: 79 PFVDSSSAAAVNTEQREEEY-SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
P V+ A+ TE ++ T+L N+P+ + + +++GT +E+ H +
Sbjct: 84 PAVEEEELASGETEGEADQVPVNTKLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRE 143
Query: 138 -NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN 196
R+RG AFVTM S ++ + NL+ ++ GR L+VN+A K P P+ P+ +
Sbjct: 144 TGRSRGFAFVTMSSIEDCETVIENLDGSQYMGRILRVNFAD--KPKPKEPLYPE--TEYK 199
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LFI NLS+ ++ L + F G +VV A V++ +S GYGFV + +K+ ETA+ +
Sbjct: 200 LFIGNLSWSVTSESLTQAFQEYG-NVVGARVLYDGETGKSRGYGFVCYSTKEELETALQS 258
Query: 257 FQGKLFMGRPLRVA 270
G GR LRV+
Sbjct: 259 LNGVELEGRALRVS 272
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W+ T E + F+++G V+ + + ++RG FV + +E
Sbjct: 195 ETEY---KLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEE 251
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +L E EGR L+V+ A+ +K
Sbjct: 252 LETALQSLNGVELEGRALRVSLAEGRK 278
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 12/184 (6%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
+ Y RL N+P++ T+ + LF + GTV +E+ M+ + +R+RG AFVTMG+ ++
Sbjct: 100 DSYDAGRLYVGNLPYSITNSALAELFGEAGTVASVEI-MYDRVTDRSRGFAFVTMGNVED 158
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFE 205
A A+ + + GRT+KVN+ ++ K + K ++ F+ NL +
Sbjct: 159 AKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNSYRGFVDSPHKIYAGNLGWG 218
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
++ LRE F +E V+SA+VI+ + RS G+GFVSF++ + A+ A+ G GR
Sbjct: 219 LTSQGLREAF-AEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVEVQGR 277
Query: 266 PLRV 269
PLR+
Sbjct: 278 PLRL 281
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T + +R F EQ G + + R+RG FV+ + + A AAL+
Sbjct: 209 KIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDI 268
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
+ E +GR L++N A+ + + P +Q
Sbjct: 269 MNGVEVQGRPLRLNLAEARAPSSPPVIQ 296
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T+ ++ LF + GTV +E+ +R+RG AFVTMGS ++A A+
Sbjct: 109 RLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRM 168
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDLR 212
+ + GRT+KVN+ ++ K + K ++ F+ NL + ++ LR
Sbjct: 169 FDGSQVGGRTVKVNFPEVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQGLR 228
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E F +E V+SA+VI+ + RS G+GFVSF++ + A A+ G GRPLR+
Sbjct: 229 EAF-AEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGVEVQGRPLRL 284
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T + +R F EQ G + + R+RG FV+ + + A AAL+
Sbjct: 212 KIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDI 271
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
+ E +GR L++N A+ + + P +Q
Sbjct: 272 MNGVEVQGRPLRLNLAEARTPSSPPVIQ 299
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 6/180 (3%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS 150
E+ E T+L N+P++ + + + +G+ +E L R+RG AFVTM S
Sbjct: 102 EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSS 161
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
++ A + NL+ E+ GRTL+VN++ K P P+ P+ + LF+ NLS+ ++
Sbjct: 162 VEDCNAVIENLDGSEYGGRTLRVNFS--DKPKPKLPLYPE--TEYKLFVGNLSWSVTSES 217
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L + F G +V+ A V++ RS GYGFV + +K +TA+ + G GR +RV
Sbjct: 218 LNQVFQEYG-NVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRVG 276
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 6/180 (3%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS 150
E+ E T+L N+P++ + + + +G+ +E L R+RG AFVTM S
Sbjct: 102 EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSS 161
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
++ A + NL+ E+ GRTL+VN++ K P P+ P+ + LF+ NLS+ ++
Sbjct: 162 VEDCNAVIENLDGSEYGGRTLRVNFS--DKPKPKLPLYPE--TEYKLFVGNLSWSVTSES 217
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L + F G +V+ A V++ RS GYGFV + +K +TA+ + G GR +R++
Sbjct: 218 LNQVFQEYG-NVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRIS 276
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W+ T E + +F+++G V+ + + R+RG FV + E
Sbjct: 199 ETEY---KLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAE 255
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +L E EGR ++++ A+ ++
Sbjct: 256 MDTALESLNGVELEGRAIRISLAQGRR 282
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 6/183 (3%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
+ E E ++T+L N+P++ + L E++G+ IE L ++RG AFVT
Sbjct: 101 IGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVT 160
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
M ++ A + NL+ EF GRTL+VN++ K P P+ P+ + LF+ NL++
Sbjct: 161 MSCVEDCNAVIQNLDGKEFMGRTLRVNFS--DKPKPKEPLYPE--TEYKLFVGNLAWTVT 216
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
++ L + F G VV A V+F +S GYGFVS+ +K +TA++ GR L
Sbjct: 217 SESLTQAFQEHG-TVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTL 275
Query: 268 RVA 270
RV+
Sbjct: 276 RVS 278
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ WT T E + F++HGTV+ + + ++RG FV+ + E
Sbjct: 201 ETEY---KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSE 257
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +++ E EGRTL+V+ A+ K+
Sbjct: 258 MDTALAIMDNVELEGRTLRVSLAQGKR 284
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T E++ +F + G V D ++ ++ K NR+RG AFVTM + +EA A+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQI-IYDKVTNRSRGFAFVTMATAEEAAKAIQ 171
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPV----QPKPFATFNLFIANLSFEARAKDLREFF 215
+ GRT +VNY ++ + V + + T+ ++ NL + RA LR F
Sbjct: 172 MFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVF 231
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
++ A VIF RS G+GFVSF + + A+ A+ + G GRPLR++ + Q
Sbjct: 232 EGRAG-LLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGVELEGRPLRLSLAEQ 289
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V R + ++ A N+ W + +R +FE +LD + + R+RG FV+
Sbjct: 199 VTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 258
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ ++A AAL +L+ E EGR L+++ A ++NP PP P
Sbjct: 259 FSTAEDAQAALESLDGVELEGRPLRLSLA---EQNP-PPGSP 296
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 6/183 (3%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
+ E E ++T+L N+P++ + L E++G+ IE L ++RG AFVT
Sbjct: 203 IGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVT 262
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
M ++ A + NL+ EF GRTL+VN++ K P P+ P+ + LF+ NL++
Sbjct: 263 MSCVEDCNAVIQNLDGKEFMGRTLRVNFS--DKPKPKEPLYPE--TEYKLFVGNLAWTVT 318
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
++ L + F G VV A V+F +S GYGFVS+ +K +TA++ GR L
Sbjct: 319 SESLTQAFQEHG-TVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTL 377
Query: 268 RVA 270
RV+
Sbjct: 378 RVS 380
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ WT T E + F++HGTV+ + + ++RG FV+ + E
Sbjct: 303 ETEY---KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSE 359
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +++ E EGRTL+V+ A+ K+
Sbjct: 360 MDTALAIMDNVELEGRTLRVSLAQGKR 386
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + +++G+ +E+ H + R+RG AFVTM S ++ A +
Sbjct: 107 TKLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIEDCNAVIE 166
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ ++ GR L+VN++ NP P P + LF+ NLS+ A ++ L + F G
Sbjct: 167 NLDESQYMGRILRVNFS----DNPKPKEPLYPETEYKLFVGNLSWSATSESLTQAFQEYG 222
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+VV A V++ +S GYGFV + +K +TA+ + G GR LRV+
Sbjct: 223 -NVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGVELEGRALRVS 272
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W++T E + F+++G V+ + + ++RG FV + E
Sbjct: 195 ETEY---KLFVGNLSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAE 251
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +L+ E EGR L+V+ A+ +K
Sbjct: 252 MQTALVSLDGVELEGRALRVSLAEGRK 278
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 13/191 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ E + +F++ G V +E+ S R+RG AFVTM + +EA AA+
Sbjct: 167 TKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIK 226
Query: 160 NLESYEFEGRTLKVNYAKIKK-KNPFPPVQ-PKPFATF-----NLFIANLSFEARAKDLR 212
+E +GR+L+VN+ ++ + +N P + P F F +++ NL++ ++ LR
Sbjct: 227 KFNGFEIDGRSLRVNFPEVPRLQNGRSPARSPSNFGGFVDSPHKVYVGNLAWSVTSETLR 286
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
E +G +V+ A+VI RS G+GFVSF S+ E A+S G GR +RV
Sbjct: 287 EALNGKG-NVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRV--- 342
Query: 273 RQFARLQTKEG 283
A+ ++ EG
Sbjct: 343 -NVAKSRSTEG 352
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 13/191 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ E + +F++ G V +E+ S R+RG AFVTM + +EA AA+
Sbjct: 159 TKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIK 218
Query: 160 NLESYEFEGRTLKVNYAKIKK-KNPFPPVQ-PKPFATF-----NLFIANLSFEARAKDLR 212
+E +GR+L+VN+ ++ + +N P + P F F +++ NL++ ++ LR
Sbjct: 219 KFNGFEIDGRSLRVNFPEVPRLQNGRSPARSPSNFGGFVDSPHKVYVGNLAWSVTSETLR 278
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
E +G +V+ A+VI RS G+GFVSF S+ E A+S G GR +RV
Sbjct: 279 EALNGKG-NVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRV--- 334
Query: 273 RQFARLQTKEG 283
A+ ++ EG
Sbjct: 335 -NVAKSRSTEG 344
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 16/184 (8%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
EE + +L N+P T T++++ A+F HGTV E+ M K R+R FVTM +P+E
Sbjct: 65 EEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEV-MFDKYTGRSRRFGFVTMSTPEE 123
Query: 154 ATAALNNLESYEFEGRTLKVNYAK-----IKKKNPFPPVQPKPF---ATFNLFIANLSFE 205
A AA+ +L E GR +KVN + I + P +P+P + + +++ NL+
Sbjct: 124 ANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAP----EPEPVFVDSQYKVYVGNLAKS 179
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
+ L+ FF SE +V+SA V +S GYGFV+F S++ + A+S F G+
Sbjct: 180 VTTEMLKNFF-SEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQ 238
Query: 266 PLRV 269
P+RV
Sbjct: 239 PIRV 242
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ + T E ++ F + G VL +S + +++G FVT S +E AA
Sbjct: 167 SQYKVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAA 226
Query: 158 LNNLESYEFEGRTLKVNYA 176
++ + E EG+ ++VN A
Sbjct: 227 VSTFNNAELEGQPIRVNKA 245
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 13/199 (6%)
Query: 95 EEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPD 152
E EYS+ ++ N+P+T + LFEQ G+V +E+ R+RG FVTMGS +
Sbjct: 80 EAEYSEDLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVE 139
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP---------FATFN-LFIANL 202
E AA+ Y F+GR L+VN ++ F P P+ F + N L++ NL
Sbjct: 140 EVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMGGGGGGGSFDSANKLYVGNL 199
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
S+ L F SE V+ A+VI+ + RS G+GFV++ S AIS G
Sbjct: 200 SWGVDNSTLENLF-SEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDL 258
Query: 263 MGRPLRVAPSRQFARLQTK 281
GR +RV + R Q +
Sbjct: 259 DGRQIRVTVAESKPREQRR 277
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 110/203 (54%), Gaps = 12/203 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T + +F + GTV ++E+ +R+RG AFVTMGS +EA A+
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLSFEARAKDLR 212
+ + GRT+KVN+ ++ + + K +T+ L++ANLS+ ++ LR
Sbjct: 170 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 229
Query: 213 EFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+ F + G+ +SA+VI+ + RS G+GF++F S + ++A+ GRPLR+
Sbjct: 230 DAFADQPGF--MSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVELEGRPLRLNV 287
Query: 272 SRQFARLQTKEGLHSDETSDDLN 294
+ Q A L + + + +D N
Sbjct: 288 AGQKAPLSSPSVVETSPENDSEN 310
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159
+RL N+P++ + F + G V+ +E+ +R+RG AFVTMGS ++A A+
Sbjct: 88 SRLFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIR 147
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARAKDLREF 214
+ E GR +KVN+ I K+ V + F ++ NL + ++DLR+
Sbjct: 148 MFDGSEIGGRIMKVNFTAIPKRGK-RLVMGSNYRGFVDSPHKIYAGNLGWGLTSQDLRDA 206
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F +E +SA+VI+ N RS GYGFVSF++ + E A+++ G GRPLR+
Sbjct: 207 F-AEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNSMNGVEVQGRPLRL 260
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T +D+R F EQ G + + + R+RG FV+ + ++ AALN+
Sbjct: 188 KIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNS 247
Query: 161 LESYEFEGRTLKVNYAKIK 179
+ E +GR L++N A K
Sbjct: 248 MNGVEVQGRPLRLNLATDK 266
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 96/173 (55%), Gaps = 3/173 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ + + LFEQ GTV E+ + + +++RG FVTM + +EA A+
Sbjct: 123 EAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAV 182
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y+F+GR L VN A + P PP + + ++++ NL ++ L + F S
Sbjct: 183 EKFSRYDFDGRLLTVNKASPRGTRPERPPPRHSFEPSLSIYVGNLPWDVDNTRLEQIF-S 241
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E +VV+A V++ RRS G+GFV+ + + A++A G+ GRP+RV+
Sbjct: 242 EHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVS 294
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYE 165
N+PW + + +F +HG V++ + + R +RG FVTM E A+ L+
Sbjct: 226 NLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQS 285
Query: 166 FEGRTLKVNYAKIKKK 181
+GR ++V+ A+ + +
Sbjct: 286 LDGRPIRVSVAEDRPR 301
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
+RL N+P++ T + +F + G+V+ +E+ +R+RG AFVTMGS EA A+
Sbjct: 103 SRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIR 162
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDL 211
+ + GRT+KVN+ ++ + + PK +++ F+ NLS+ ++ L
Sbjct: 163 MFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGL 222
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
R+ F ++ ++ A+VI+ RS G+GF+SF S + AE+A++A GRPLR+
Sbjct: 223 RDAF-ADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLRL 279
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T E +R F H +L ++ + R+RG F++ S + A +ALN
Sbjct: 207 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 266
Query: 161 LESYEFEGRTLKVNYAKIK 179
+ E EGR L++N A ++
Sbjct: 267 MNEVEVEGRPLRLNLAAVR 285
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
+RL N+P++ T + +F + G+V+ +E+ +R+RG AFVTMGS EA A+
Sbjct: 246 SRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIR 305
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDL 211
+ + GRT+KVN+ ++ + + PK +++ F+ NLS+ ++ L
Sbjct: 306 MFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGL 365
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
R+ F ++ ++ A+VI+ RS G+GF+SF S + AE+A++A GRPLR+
Sbjct: 366 RDAF-ADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMBEVEVEGRPLRL 422
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T E +R F +L ++ + R+RG F++ S + A +ALN
Sbjct: 350 KIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 409
Query: 161 LESYEFEGRTLKVNYAKIK 179
++ E EGR L++N A ++
Sbjct: 410 MBEVEVEGRPLRLNLAAVR 428
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEA 154
EE ++T+L N+P++ + L E++G+ +E L ++RG AF TM ++
Sbjct: 112 EEDTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDC 171
Query: 155 TAALNNLESYEFEGRTLKVNYA-KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A + NL+ EF GRTL+VN++ K K K P + LFI NLS++ ++ L E
Sbjct: 172 KAVIENLDGKEFMGRTLRVNFSDKPKAKESL-----YPETEYKLFIGNLSWKVTSEILTE 226
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F G VV A VI+ S GYGFVS+ +K E A++ GR LRV+
Sbjct: 227 AFQEHG-TVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTIMNDVELEGRALRVS 282
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDE 153
E EY +L N+ W T E + F++HGTV+ + + N RG FV+ + E
Sbjct: 205 ETEY---KLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSE 261
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AAL + E EGR L+V+ A+ K+
Sbjct: 262 MEAALTIMNDVELEGRALRVSLAQGKR 288
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 13/185 (7%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
EE +++ N+PWT + + QHGTV +E+ ++ K R+RG AFVTM S D+
Sbjct: 18 EEQLGSKVYVGNLPWTCDSAQLAEICSQHGTVDVVEV-IYDKLSGRSRGFAFVTMASHDD 76
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPF--------PPVQPKPFATFN-LFIANLSF 204
A A +N L+ + GR LKVN+ + +K P P +P N LF+ N+ +
Sbjct: 77 AQALINALDGSDMGGRALKVNFPQSQKDKPRFEKSEARPPTADRRPRDDPNKLFVGNIPW 136
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+ F G VV A++++ + RS G+GFV+ + A+TA+ G G
Sbjct: 137 GCDEAAMTSLFSPYG-SVVDAKIVYDRDSGRSRGFGFVTMEKVGDAQTAMENLDGTELDG 195
Query: 265 RPLRV 269
R LRV
Sbjct: 196 RELRV 200
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMG 149
T R +L N+PW + +LF +G+V+D ++ R+RG FVTM
Sbjct: 117 TADRRPRDDPNKLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTME 176
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+A A+ NL+ E +GR L+VN+A K
Sbjct: 177 KVGDAQTAMENLDGTELDGRELRVNFAGEK 206
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T E++ +F + G V D ++ ++ K NR+RG AFVTM + +EA A+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQI-IYDKVTNRSRGFAFVTMATAEEAAKAIQ 171
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPV----QPKPFATFNLFIANLSFEARAKDLREFF 215
+ GRT +VNY ++ + V + + T+ ++ NL + RA LR F
Sbjct: 172 MFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVF 231
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
++ A VIF RS G+GFVSF + + A+ A+ + G GR LR++ + Q
Sbjct: 232 EGRAG-LLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGVELEGRSLRLSLAEQ 289
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V R + ++ A N+ W + +R +FE +LD + + R+RG FV+
Sbjct: 199 VTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 258
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ ++A AAL +L+ E EGR+L+++ A ++NP PP P
Sbjct: 259 FSTAEDAQAALESLDGVELEGRSLRLSLA---EQNP-PPGSP 296
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 2 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 61
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P+ FA+ F ++ NL ++A L + F S
Sbjct: 62 ETFNRYDISGRLLNVNRAAQRGSRVERP--PRQFASSFRAYVGNLPWQAEDSRLVQLF-S 118
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E +VV+A V++ RS G+GFV+ SK+ ++AISA G+ GRPLRV
Sbjct: 119 EHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 170
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R N+PW + + LF +HG V++ + + R+RG FVTM S ++ +A
Sbjct: 95 SSFRAYVGNLPWQAEDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSA 154
Query: 158 LNNLESYEFEGRTLKV 173
++ L+ E +GR L+V
Sbjct: 155 ISALDGQEMDGRPLRV 170
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NL ++ ++ L + F G V AEVI++ +S G+GFV+ + + A+ AI
Sbjct: 5 VYVGNLPYDVDSERLAQLFDQAGV-VEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 63
Query: 257 FQGKLFMGRPLRV-----------APSRQFA 276
F GR L V P RQFA
Sbjct: 64 FNRYDISGRLLNVNRAAQRGSRVERPPRQFA 94
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + ++RG FVTM + +EA A+ L Y+
Sbjct: 133 NLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEMLNRYD 192
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA F ++ NL ++ L + F SE +VV+
Sbjct: 193 INGRLLNVNRAAPRGSRVERP--PRQFAPAFRAYVGNLPWQVDDSRLLQLF-SEHGEVVN 249
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
A V++ RS G+GFVS SK+ + AISA G+ GRPLRV
Sbjct: 250 ASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 294
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + R+RG FV+M S +E A++
Sbjct: 222 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 281
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 282 LDGQELDGRPLRVNVAAERPQRGF 305
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + ++RG FVTM + +EA A+ L Y+
Sbjct: 22 NLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEMLNRYD 81
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA F ++ NL ++ L + F SE +VV+
Sbjct: 82 INGRLLNVNRAAPRGSRVERP--PRQFAPAFRAYVGNLPWQVDDSRLLQLF-SEHGEVVN 138
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
A V++ RS G+GFVS SK+ + AISA G+ GRPLRV
Sbjct: 139 ASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + + R+RG FV+M S +E A++
Sbjct: 111 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 170
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 171 LDGQELDGRPLRVNVAAERPQRGF 194
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ E + LFEQ G V E+ + + ++RG FVTM + +EA A+ L Y+
Sbjct: 134 NLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEMLNRYD 193
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR L VN A + P P+ FA F ++ NL ++ L + F SE +VV+
Sbjct: 194 INGRLLNVNRAAPRGSRVERP--PRQFAPAFRAYVGNLPWQVDDSRLLQLF-SEHGEVVN 250
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
A V++ RS G+GFVS SK+ + AISA G+ GRPLRV
Sbjct: 251 ASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 295
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + R+RG FV+M S +E A++
Sbjct: 223 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 282
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 283 LDGQELDGRPLRVNVAAERPQRGF 306
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T ++ +F + GTV+D+++ ++ K +R+RG FVTMGS +EA A+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKGAMQ 175
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAKDL 211
S + GRT+KVN+ ++ + ++ K + ++ NL ++ ++ L
Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWDLTSQGL 235
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G GR LR+
Sbjct: 236 KDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 292
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
++ A N+ W T + ++ F VL ++ ++ +N R+RG F++ S + +AL
Sbjct: 220 KVYAGNLGWDLTSQGLKDAFGDQPGVLGAKV-IYERNTGRSRGFGFISFESAENVQSALA 278
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ E EGR L++N A ++K P V P
Sbjct: 279 TMNGVEVEGRALRLNLASEREK---PTVSP 305
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS 150
+ +E ++ T+L N+P++ + L + +G+ IE L ++RG AFVTM
Sbjct: 104 QDSDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSC 163
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA-KIKKKNP-FPPVQPKPFATFNLFIANLSFEARA 208
++ A + NL+ E+ GRTL+VN++ K K K P +P + K LF+ NLS+
Sbjct: 164 IEDCNAVIENLDGKEYLGRTLRVNFSNKPKAKEPLYPETEHK------LFVGNLSWSVTN 217
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
+ L + F G VV A V++ RS GYGFV F +K+ E A+ A GR +R
Sbjct: 218 EILTQAFQEYG-TVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVELEGRAMR 276
Query: 269 VA 270
V+
Sbjct: 277 VS 278
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T+E + F+++GTV+ + + R+RG FV + +E AAL
Sbjct: 205 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGA 264
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ K+
Sbjct: 265 LNDVELEGRAMRVSLAEGKR 284
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 12/185 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T + +F + GTV ++E+ +R+RG AFVTMGS +EA A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLSFEARAKDLR 212
+ + GRT+KVN+ ++ + + K +T+ L++ANLS+ ++ LR
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 213 EFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+ F + G+ +SA+VI+ + RS G+GF++F S + +A+ GRPLR+
Sbjct: 235 DAFADQPGF--MSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNV 292
Query: 272 SRQFA 276
+ Q A
Sbjct: 293 AGQKA 297
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 12/190 (6%)
Query: 95 EEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSP 151
EEE+S+ R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S
Sbjct: 76 EEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSV 134
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
E AA+ Y +GR+L+VN ++P P+ A +++ NLS+ L
Sbjct: 135 QEVEAAVEQFNGYVLDGRSLRVNSGPPPPRDPSSQRGPRGDAN-RVYVGNLSWGVDNSAL 193
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA- 270
F SE +V+ A +++ RS G+GFV++ S + E AIS G GR +RV
Sbjct: 194 ANLF-SEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGRQIRVTV 252
Query: 271 -----PSRQF 275
P RQF
Sbjct: 253 AESKPPRRQF 262
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P T T+E++ + E+HG V E+ M+ K R+R AFVTM + ++A AA+
Sbjct: 80 RLYVGNIPRTLTNEELTKIVEEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTAEDANAAIE 138
Query: 160 NLESYEFEGRTLKVNYA-KIKKKNPFPPVQPKPF----ATFNLFIANLSFEARAKDLREF 214
L E GR +KVN K + P +Q + + +++ NL+ L+ F
Sbjct: 139 KLNGTEIGGREIKVNITEKPLQSLDLPSLQSDETQFVDSPYKVYVGNLAKTVATDTLKNF 198
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F +G +V+SA+V +S+G+GFV+F S++ E AIS+F L G+P+RV
Sbjct: 199 FSKKG-NVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLLEGQPIRV 252
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 175 YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR 234
+A ++ P V P A L++ N+ ++L + + E V AEV++
Sbjct: 59 FAVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKI-VEEHGAVEKAEVMYDKYSG 117
Query: 235 RSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDET 289
RS + FV+ K+ + A AI G GR ++V + + + L SDET
Sbjct: 118 RSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPLQSLDLPSLQSDET 172
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P T T+E++ + E+HG V E+ M+ K R+R AFVTM + ++A AA+
Sbjct: 80 RLYVGNIPRTLTNEELTKIVEEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTAEDANAAIE 138
Query: 160 NLESYEFEGRTLKVNYA-KIKKKNPFPPVQPKPF----ATFNLFIANLSFEARAKDLREF 214
L E GR +KVN K + P +Q + + +++ NL+ L+ F
Sbjct: 139 KLNGTEIGGREIKVNITEKPLQSLDLPSLQSDESQFVDSPYKVYVGNLAKTVATDTLKNF 198
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F +G +V+SA+V +S+G+GFV+F S++ E AIS+F L G+P+RV
Sbjct: 199 FSKKG-NVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLLEGQPIRV 252
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ GTV E+ + + + +RG FVTM + +E+ A+
Sbjct: 148 EAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAV 207
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L Y+ +GR L VN A + P PP +P + +++ NL ++ + L + F S
Sbjct: 208 EMLHRYDLDGRFLTVNKAAPRGSRPERPPRVSEP--GYRIYVGNLPWDVDSGRLEQIF-S 264
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VVSA V+F RS G+GFV+ ++ AI+A G+ GRP+RV
Sbjct: 265 EHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLDGRPIRV 316
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+ + + NR+RG FVTM + E A+
Sbjct: 244 RIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAA 303
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 304 LDGQNLDGRPIRVNVAEERPRRTF 327
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +R+RG FV+M + +EA A+
Sbjct: 126 EAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 185
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
+ YE +GR L VN A + P P P+ F F +++ NL ++ + L + F S
Sbjct: 186 DMFHRYELDGRLLTVNKAAPRGSQPERP--PRVFEPAFRMYVGNLPWDVDSARLEQVF-S 242
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V+F RS G+GFV+ S+ E AI+A G+ GR +RV
Sbjct: 243 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRV 294
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM S E A+
Sbjct: 222 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAA 281
Query: 161 LESYEFEGRTLKVNYAK 177
+ +GRT++VN A+
Sbjct: 282 TDGQTLDGRTIRVNVAE 298
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 104 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 163
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P+ FA+ F ++ NL ++A L + F S
Sbjct: 164 ETFNRYDISGRLLNVNRAAQRGSRVERP--PRQFASSFRAYVGNLPWQAEDSRLVQMF-S 220
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E +VV+A +++ RS G+GFV+ SK+ ++AISA G+ GRPLRV
Sbjct: 221 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + +F +HG V++ + + R+RG FVTM S ++ +A++
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 260 LDGQEMDGRPLRVNVAAERPQRGF 283
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NL ++ ++ L + F G V AEVI++ +S G+GFV+ + + A+ AI
Sbjct: 107 VYVGNLPYDVDSERLAQLFDQAGV-VEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 165
Query: 257 FQGKLFMGRPLRV-----------APSRQFA 276
F GR L V P RQFA
Sbjct: 166 FNRYDISGRLLNVNRAAQRGSRVERPPRQFA 196
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+P++ + LFEQ G+V +E+ + R+RG FVTM + +EA AA+
Sbjct: 76 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 135
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----FATFN-LFIANLSFEARAKDLREFF 215
Y F+GR L+VN ++ F P P+ F + N L++ NL++ L F
Sbjct: 136 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLF 195
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA----- 270
SE V+ A+VI+ RS G+GFV++ S + AIS G GR +RV
Sbjct: 196 -SEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESK 254
Query: 271 PSRQF 275
P RQF
Sbjct: 255 PRRQF 259
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+P++ + LFEQ G+V +E+ + R+RG FVTM + +EA AA+
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----FATFN-LFIANLSFEARAKDLREFF 215
Y F+GR L+VN ++ F P P+ F + N L++ NL++ L F
Sbjct: 141 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLF 200
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA----- 270
SE V+ A+VI+ RS G+GFV++ S + AIS G GR +RV
Sbjct: 201 -SEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESK 259
Query: 271 PSRQF 275
P RQF
Sbjct: 260 PRRQF 264
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+P++ + LFEQ G+V +E+ + R+RG FVTM + +EA AA+
Sbjct: 22 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIEQ 81
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----FATFN-LFIANLSFEARAKDLREFF 215
Y F+GR L+VN ++ F P P+ F + N L++ NL++ L F
Sbjct: 82 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLF 141
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA----- 270
+G V+ A+VI+ RS G+GFV++ S + AIS G GR +RV
Sbjct: 142 SEQG-TVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESK 200
Query: 271 PSRQF 275
P RQF
Sbjct: 201 PRRQF 205
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +R+RG FV+M + +EA A+
Sbjct: 147 EAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 206
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
+ YE +GR L VN A + P P P+ F F +++ NL ++ + L + F S
Sbjct: 207 DMFHRYELDGRLLTVNKAAPRGSQPERP--PRVFEPAFRMYVGNLPWDVDSARLEQVF-S 263
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V+F RS G+GFV+ S+ E AI+A G+ GR +RV
Sbjct: 264 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRV 315
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM S E A+
Sbjct: 243 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAA 302
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
+ +GRT++VN A+ + +
Sbjct: 303 TDGQTLDGRTIRVNVAEERPR 323
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 104 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 163
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P+ FA+ F ++ NL ++A L + F S
Sbjct: 164 ETFNRYDISGRLLNVNRAAQRGSRVERP--PRRFASSFRAYVGNLPWQAEDSRLVQMF-S 220
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E +VV+A +++ RS G+GFV+ SK+ ++AISA G+ GRPLRV
Sbjct: 221 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + +F +HG V++ + + R+RG FVTM S ++ +A++
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 260 LDGQEMDGRPLRVNVAAERPQRGF 283
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 185 PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
PP + K +++ NL ++ ++ L + F G V AEVI++ +S G+GFV+
Sbjct: 101 PPEEAK------VYVGNLPYDVDSERLAQLFDQAGV-VEVAEVIYNRESGQSRGFGFVTM 153
Query: 245 KSKKVAETAISAFQGKLFMGRPLRV 269
+ + A+ AI F GR L V
Sbjct: 154 STIEEADKAIETFNRYDISGRLLNV 178
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 100/178 (56%), Gaps = 12/178 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T ++ +F + GTV+D+++ ++ K +R+RG FVTMGS +EA A+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAKDL 211
S + GRT+KVN+ ++ + ++ K + ++ NL + ++ L
Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G GR LR+
Sbjct: 236 KDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 292
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
++ A N+ W T + ++ F VL ++ ++ +N R+RG F++ S + +AL
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKV-IYERNTGRSRGFGFISFESAENVQSALA 278
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ E EGR L++N A ++K P V P
Sbjct: 279 TMNGVEVEGRALRLNLASEREK---PTVSP 305
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 6/179 (3%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSP 151
+++ + S T+L N+P++ + L + +G+ IE L ++RG AFVTM
Sbjct: 102 EQDSDSSATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCI 161
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
++ A + NL+ EF GRTL+VN++ K P P+ P+ LF+ NLS+ + L
Sbjct: 162 EDCNAVIENLDGKEFLGRTLRVNFS--SKPKPKEPLYPE--TEHKLFVGNLSWSVTNEIL 217
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ F G VV A V++ RS GYGFV + ++ E A++A GR +RV+
Sbjct: 218 TQAFQEYG-TVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRAMRVS 275
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T+E + F+++GTV+ + + R+RG FV + E AA+
Sbjct: 202 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAA 261
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ K+
Sbjct: 262 LNDVELEGRAMRVSLAQGKR 281
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 104 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKAI 163
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
Y GR L VN A + P P+ FA+ F ++ NL ++A L + F S
Sbjct: 164 ETFNRYNISGRLLNVNRAAQRGSRVERP--PRQFASSFRAYVGNLPWQAEDSRLVQMF-S 220
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E +VV+A +++ RS G+GFV+ SK+ ++AISA G+ GRPLRV
Sbjct: 221 EHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 272
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + +F +HG V++ + + R+RG FVTM S ++ +A++
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 260 LDGQEMDGRPLRVNVAAERPQRGF 283
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NL ++ ++ L + F G V AEVI++ +S G+GFV+ + + A+ AI
Sbjct: 107 VYVGNLPYDVDSERLAQLFDQAGV-VEVAEVIYNKESGQSRGFGFVTMSTIEEADKAIET 165
Query: 257 FQGKLFMGRPLRV-----------APSRQFA 276
F GR L V P RQFA
Sbjct: 166 FNRYNISGRLLNVNRAAQRGSRVERPPRQFA 196
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 10/188 (5%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
EE +L N+P+ E + LFE+ GTV E+ + + +R+RG FVTM + +E
Sbjct: 146 EEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEE 205
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLR 212
A A++ Y+ GR L VN A + +P+PF TF +++ NL ++ L
Sbjct: 206 AEKAVDTFNRYDLSGRLLTVNKAAPRGSRQ--EREPRPFQPTFRIYVGNLPWDVDNGRLE 263
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV--- 269
+ F SE VV A V++ + RS G+GFV+ + AI+A G+ GR +RV
Sbjct: 264 QLF-SEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVA 322
Query: 270 --APSRQF 275
P R F
Sbjct: 323 EERPRRNF 330
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +R+RG FV+M + +EA A+
Sbjct: 942 EAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 1001
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
+ YE +GR L VN A + P P P+ F F +++ NL ++ + L + F S
Sbjct: 1002 DMFHRYELDGRLLTVNKAAPRGSQPERP--PRVFEPAFRMYVGNLPWDVDSARLEQVF-S 1058
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V+F RS G+GFV+ S+ E AI+A G+ GR +RV
Sbjct: 1059 EHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRV 1110
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM S E A+
Sbjct: 1038 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAA 1097
Query: 161 LESYEFEGRTLKVNYAK 177
+ +GRT++VN A+
Sbjct: 1098 TDGQTLDGRTIRVNVAE 1114
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 106/183 (57%), Gaps = 14/183 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATA 156
+ T++ N+P++ ++ + ++HG+V +E+ ++ +N R+RG AF TM S ++A A
Sbjct: 109 AGTKVYLGNLPFSCDSAELAGIIQEHGSVEMVEV-IYDQNTGRSRGFAFATMSSVEDANA 167
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-----TFN-----LFIANLSFEA 206
+ NL+ ++ GRTL+VN + ++ ++ K + T N ++I NLS++
Sbjct: 168 LVENLDGSQYGGRTLRVNLREEASRSLRVNLRDKSRSEQRNQTNNDGQHRVYIGNLSWDV 227
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266
+ L E F SE +++ A+++F RS G+GF++F ++ AE A+++ GK GR
Sbjct: 228 NEEILNEVF-SEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGKELEGRA 286
Query: 267 LRV 269
+RV
Sbjct: 287 MRV 289
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 91 TEQREEEYS--KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
+EQR + + + R+ N+ W E + +F +HG +LD ++ + R+RG F+T
Sbjct: 204 SEQRNQTNNDGQHRVYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFIT 263
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA 176
+ EA AA+ +L E EGR ++V+ A
Sbjct: 264 FSTQSEAEAAVASLNGKELEGRAMRVDLA 292
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 10/188 (5%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
EE +L N+P+ E + LFE+ GTV E+ + + +R+RG FVTM + +E
Sbjct: 140 EEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEE 199
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLR 212
A A++ Y+ GR L VN K + +P+PF TF +++ NL ++ L
Sbjct: 200 AEKAVDTFNRYDLSGRLLTVN--KAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLE 257
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV--- 269
+ F SE VV A V++ + RS G+GFV+ + AI+A G+ GR +RV
Sbjct: 258 QLF-SEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVA 316
Query: 270 --APSRQF 275
P R F
Sbjct: 317 EERPRRNF 324
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 15/189 (7%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTM 148
T+ EE+ RL N+P+T T ++ +F + GTV+D+++ ++ K +R+RG FVTM
Sbjct: 101 TQASGEEW---RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTM 156
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIA 200
GS +EA A+ S + GRT+KVN+ ++ + ++ K + ++
Sbjct: 157 GSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAG 216
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + ++ L++ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G
Sbjct: 217 NLGWNLTSQGLKDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV 275
Query: 261 LFMGRPLRV 269
GR LR+
Sbjct: 276 EVEGRALRL 284
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
++ A N+ W T + ++ F VL ++ ++ +N R+RG F++ S + +AL
Sbjct: 212 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKV-IYERNTGRSRGFGFISFESAENVQSALA 270
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ E EGR L++N A ++K P V P
Sbjct: 271 TMNGVEVEGRALRLNLASEREK---PTVSP 297
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 6/183 (3%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
+ E E ++T+L N+P++ + L E++G+ IE L ++RG AFVT
Sbjct: 101 IGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVT 160
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
M ++ A + NL+ EF GRTL+VN++ K P P+ P+ + LF+ NL++
Sbjct: 161 MSCVEDCNAVIQNLDGKEFMGRTLRVNFS--DKPKPKEPLYPE--TEYKLFVGNLAWTVT 216
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
+ + F G VV A V+F + GYGFVS+ +K +TA++ GR L
Sbjct: 217 FESFTQAFQEHG-TVVGARVLFDGETGKFRGYGFVSYATKSEMDTALAIMDNVELEGRTL 275
Query: 268 RVA 270
RV+
Sbjct: 276 RVS 278
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ WT T E F++HGTV+ + + + RG FV+ + E
Sbjct: 201 ETEY---KLFVGNLAWTVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSE 257
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL +++ E EGRTL+V+ A+ K+
Sbjct: 258 MDTALAIMDNVELEGRTLRVSLAQGKR 284
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 9/178 (5%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATA 156
S RL N+P T T+E++ + ++HG V E+ M+ K R+R AFVTM + ++ATA
Sbjct: 68 SARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTVEDATA 126
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARAKDL 211
+ L E GR +KVN + P P+ + F +++ NL+ L
Sbjct: 127 VIEKLNGTEIGGREVKVNVTEKPLSTPDLPLLQAEESEFIDSPHKVYVGNLAKTVTTDTL 186
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ FF SE V+SA+V +S+GYGFV+F S++ E AIS+F L G+ +RV
Sbjct: 187 KNFF-SEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRV 243
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAALNN 160
++ N+ T T + ++ F + G VL ++S + +++ G FVT S ++ AA+++
Sbjct: 171 KVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISS 230
Query: 161 LESYEFEGRTLKVNYA 176
+ EG+T++VN A
Sbjct: 231 FNNSLLEGQTIRVNKA 246
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 8/180 (4%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
EE + +L N+P T T++++ A+F HGTV+ E+ M+ K R+R FVTM + +E
Sbjct: 64 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEV-MYDKYSGRSRRFGFVTMSTAEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPF--ATFNLFIANLSFEARAK 209
AA+ +L E GR +KVN + + + P F + + +++ NL+ + +
Sbjct: 123 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 182
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L+ FF SE +V+SA V +S GYGFV+F S++ E A+S F G+ +RV
Sbjct: 183 VLKNFF-SEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTELEGQTIRV 241
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ T E ++ F + G VL +S + +++G FVT S +E AA
Sbjct: 166 SQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAA 225
Query: 158 LNNLESYEFEGRTLKVNYA 176
++ + E EG+T++VN A
Sbjct: 226 VSTFNNTELEGQTIRVNRA 244
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 189 PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKK 248
P+ AT L++ N+ +L F + G VV AEV++ RS +GFV+ + +
Sbjct: 63 PEELATRKLYVGNIPRTVTNDELSAMFAAHGT-VVRAEVMYDKYSGRSRRFGFVTMSTAE 121
Query: 249 VAETAISAFQGKLFMGRPLRVAPSRQF 275
AI + GR ++V + F
Sbjct: 122 EVAAAIESLNDTEVGGRKIKVNVTESF 148
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + +GT +E L R+RG AFVTM + ++ A +
Sbjct: 113 TKLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIE 172
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ +F GR L+VN++ K P P+ P+ LF+ NLS+ ++ L E F G
Sbjct: 173 NLDGSQFMGRILRVNFS--DKPKPKEPLYPE--TEHKLFVGNLSWSVTSESLVEAFQEYG 228
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
++V A V++ RS GYGFV + ++ E A+ + G GR +RV+
Sbjct: 229 -NIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNGVELEGRAMRVS 278
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T E + F+++G ++ + + R+RG FV + E AL +
Sbjct: 205 KLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVS 264
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ KK
Sbjct: 265 LNGVELEGRAMRVSLAQGKK 284
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 107 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAI 166
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P+ FA+ F ++ NL ++A L + F S
Sbjct: 167 EMFNRYDISGRLLNVNRAAQRGSRVERP--PRQFASAFRAYVGNLPWQAEDSRLVQLF-S 223
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E +V++A V++ RS G+GFV+ SK+ + AISA G+ GRPLRV
Sbjct: 224 EHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDAISALDGQELDGRPLRV 275
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R N+PW + + LF +HG VL+ + + R+RG FVTM S +E A
Sbjct: 200 SAFRAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDA 259
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++ L+ E +GR L+VN A + + F
Sbjct: 260 ISALDGQELDGRPLRVNVAAERPQRGF 286
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NL ++ ++ L + F G V AEVI++ +S G+GFV+ + + A+ AI
Sbjct: 110 VYVGNLPYDVDSERLAQLFDQAGV-VEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIEM 168
Query: 257 FQGKLFMGRPLRV-----------APSRQFA 276
F GR L V P RQFA
Sbjct: 169 FNRYDISGRLLNVNRAAQRGSRVERPPRQFA 199
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 12/179 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+P+T + LFEQ G+V +E+ R+RG FVTM + +E +AA+
Sbjct: 85 KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQ 144
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPK---------PFATFN-LFIANLSFEARAKD 210
Y F+GR L+VN ++ F P P+ F + N L++ NLS+
Sbjct: 145 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRGMGGGGGGGSFDSGNKLYVGNLSWGVDNST 204
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L F SE V+ A+VI+ + RS G+GFV++ S AIS G GR +RV
Sbjct: 205 LENLF-SEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 262
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S +L N+ W + + LF + G VLD ++ R+RG FVT GS DE A
Sbjct: 187 SGNKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNA 246
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNP 183
++NL+ + +GR ++V A+ K + P
Sbjct: 247 ISNLDGVDLDGRQIRVTVAESKPREP 272
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALN 159
T+L N+P+ ++ + LFE G VLD+ + + N RG FVTMG+ +EA +
Sbjct: 113 TKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE 172
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ EGR L VN A + P Q +T +++ NL ++A L + F SE
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTKVERPSQAGS-STNKIYVGNLPWQADDNSLLQLF-SEH 230
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+ A V++ RS G+GFV++ S+ AI+A G GRPLRV
Sbjct: 231 GKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRV 280
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S ++ N+PW + + LF +HG VL+ + + R+RG FVT S E A
Sbjct: 205 STNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDA 264
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
+ L+ + +GR L+VN A+ +++
Sbjct: 265 IAALDGTDMDGRPLRVNIAEDRRRG 289
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 10/177 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+PW+ ++ LF+ G V +E+ + R+RG AFVTM + +A A+
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPP----VQPKPFATFN----LFIANLSFEARAKDLR 212
YE++GRTL+VN K+ F P KP +N +F+ NL + A L
Sbjct: 174 FNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFVGNLPWGADDLSLE 233
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ F G V+ A+V++ RS G+GFV+ S + E AIS+ G GR ++V
Sbjct: 234 QLFSDHG-KVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSDMDGRQIKV 289
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R+ N+PW + + LF HG V++ ++ + R+RG FVT+ SP E A
Sbjct: 214 SANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEA 273
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
+++L+ + +GR +KV A+ K
Sbjct: 274 ISSLDGSDMDGRQIKVTLAETK 295
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 5/195 (2%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV 146
A TE+ +E +L N+P+ E + LF+Q G V E+ + + +R+RG FV
Sbjct: 84 AGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFV 143
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFE 205
TM + +EA A+ Y+ GR L VN K + P P+ F T+ +++ N+ ++
Sbjct: 144 TMSTVEEADKAVELYSQYDLNGRLLTVN--KAAPRGSRPERAPRTFQPTYRIYVGNIPWD 201
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
L + F SE VVSA V+F RS G+GFV+ S+ AI+ G+ GR
Sbjct: 202 IDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGR 260
Query: 266 PLRVAPSRQFARLQT 280
+RV + + R T
Sbjct: 261 TIRVNAAEERPRRNT 275
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 97/204 (47%), Gaps = 19/204 (9%)
Query: 89 VNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAF 145
V+++ E +S+ +L N+P+ + LFE G V +E+ ++ K R+RG F
Sbjct: 79 VSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEV-IYDKVTGRSRGFGF 137
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK---------PFATFN 196
VTM S DE AA YE EGR L+VN ++ P+
Sbjct: 138 VTMSSIDEVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSRSPRFGGGGGGGESLEGNR 197
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NLS+ L FF SE VV A+V++ RS G+GFV++ S + E AI +
Sbjct: 198 LYVGNLSWSVDNLALESFF-SEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDS 256
Query: 257 FQGKLFMGRPLRVA-----PSRQF 275
G GR +RV+ P RQF
Sbjct: 257 LNGAELDGRAIRVSVAEARPRRQF 280
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 16/184 (8%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
E + +L NVP T T++++R +F HGTV E+ M+ K NR+R FVTM + +E
Sbjct: 62 EVVAARKLYVGNVPRTVTNDELRDMFAAHGTVERAEV-MYDKYTNRSRRFGFVTMSTVEE 120
Query: 154 ATAALNNLESYEFEGRTLKVNYAK-----IKKKNPFPPVQPKPF---ATFNLFIANLSFE 205
A AA+ L E GR +KVN + I + P + +P + + +++ NL+
Sbjct: 121 ANAAVEALNGTEVGGRKIKVNVTESFLPNIDRSAP----ESEPVFVDSQYKVYVGNLAKN 176
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
+ L+ FF SE ++SA V +S GYGFV+F S++ E A++ F G+
Sbjct: 177 VTTEVLKNFF-SEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAELEGQ 235
Query: 266 PLRV 269
P+RV
Sbjct: 236 PIRV 239
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 189 PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKK 248
P+ A L++ N+ +LR+ F + G V AEV++ RS +GFV+ + +
Sbjct: 61 PEVVAARKLYVGNVPRTVTNDELRDMFAAHG-TVERAEVMYDKYTNRSRRFGFVTMSTVE 119
Query: 249 VAETAISAFQGKLFMGRPLRVAPSRQF 275
A A+ A G GR ++V + F
Sbjct: 120 EANAAVEALNGTEVGGRKIKVNVTESF 146
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ T E ++ F + G +L +S + ++++G FVT S +E AA
Sbjct: 164 SQYKVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAA 223
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ + E EG+ ++VN A
Sbjct: 224 VATFNNAELEGQPIRVNRA 242
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALN 159
T+L N+P+ ++ + LFE G VLD+ + + N RG FVTMG+ +EA +
Sbjct: 113 TKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE 172
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ EGR L VN A + P Q +T +++ NL ++A L + F SE
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTKVERPSQAGS-STNKIYVGNLPWQADDNSLLQLF-SEH 230
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+ A V++ RS G+GFV++ S+ AI+A G GRPLRV
Sbjct: 231 GKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRV 280
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S ++ N+PW + + LF +HG VL+ + + R+RG FVT S E A
Sbjct: 205 STNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDA 264
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
+ L+ + +GR L+VN A+ +++
Sbjct: 265 IAALDGTDMDGRPLRVNIAEDRRRG 289
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LF+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 110 EAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKAI 169
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P+ FA F ++ NL ++A L + F S
Sbjct: 170 EMFNRYDISGRLLNVNRASPRGTRMERP--PRQFAPAFRAYVGNLPWQADDSRLVQLF-S 226
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E +VV+A V++ RS G+GFV+ SK+ + AISA G+ GRPLRV
Sbjct: 227 EYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQELDGRPLRV 278
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + LF ++G V++ + + R+RG FVTM S +E A++
Sbjct: 206 RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISA 265
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 266 LDGQELDGRPLRVNVAAERPQRGF 289
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 19/211 (9%)
Query: 83 SSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRN 140
SS EQ++ E+S+ +L N+P++ + LFEQ G+V +E+ R+
Sbjct: 58 SSEYGTEGAEQQDGEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRS 117
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF----- 195
RG FVTM S +EA AA+ Y F+GR L+VN ++ P P+
Sbjct: 118 RGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGGGGS 177
Query: 196 ------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+++ NL++ L F SE V+ A+VI+ + RS G+GFV++ S +
Sbjct: 178 FVDSGNKVYVGNLAWGVDNSTLENLF-SEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEE 236
Query: 250 AETAISAFQGKLFMGRPLRVA-----PSRQF 275
AIS G GR +RV P R+F
Sbjct: 237 VNNAISNLDGIDLDGRQIRVTVAESKPRREF 267
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 14/186 (7%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSP 151
Q E RL N+P++ + + LF + G V+ +E+ NR+RG AFVTMG+
Sbjct: 100 QEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNV 159
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLS 203
++A A+ + GR +KVN+ ++ P + + +T+ ++ NL
Sbjct: 160 EDAEEAIRMFDGTTVGGRAIKVNFPEV----PIVGKRVQMGSTYRGYVDSPHKIYAGNLG 215
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
++ ++ LR+ F + ++SA+V++ N +S GYGFVSF++ + E A+SA G
Sbjct: 216 WDMTSQYLRKAFAKQ-PGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQ 274
Query: 264 GRPLRV 269
GRPLR+
Sbjct: 275 GRPLRL 280
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T + +R F + +L ++ N ++RG FV+ + ++ AL+
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
+ E +GR L++ A +K
Sbjct: 268 MNGVEVQGRPLRLKLAVDNRK 288
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 12/189 (6%)
Query: 89 VNTEQREEEYS-------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRN 140
+N + EEE T+L N+P+ + + + +E L ++
Sbjct: 60 INVKLEEEEKDLDPPAAINTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQS 119
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
RG AFVTM + ++ ++NL+ E+ GR LKVN+A K N P P LF+
Sbjct: 120 RGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLY---PETEHKLFVG 176
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NLS+ ++ L E F E DVV A V++ + RS GYGFV + SK ETA+ + G
Sbjct: 177 NLSWTVTSESLAEAF-RECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDGF 235
Query: 261 LFMGRPLRV 269
GR +RV
Sbjct: 236 ELEGRAIRV 244
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + G V+ + R+RG FV S E AL +
Sbjct: 172 KLFVGNLSWTVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALES 231
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L+ +E EGR ++VN A+ KK
Sbjct: 232 LDGFELEGRAIRVNLAQGKK 251
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEA 154
E T+L N+P++ + A+ + +G IE+ ++ +N ++RG AFVTM S ++
Sbjct: 98 ESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEV-LYDRNTGKSRGFAFVTMSSIEDC 156
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
+ NL+ + GR L+VN++ K P P+ P+ + LF+ NLS+ ++ L +
Sbjct: 157 NKVIENLDGSAYMGRILRVNFSD--KPKPKEPLYPE--TEYKLFVGNLSWSVTSEILTQA 212
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F G +VV A VI+ +S GYGFVS+ +K ETA+ GR +RV+
Sbjct: 213 FQEYG-NVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVS 267
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
E EY +L N+ W+ T E + F+++G V+ + + ++RG FV+ + E
Sbjct: 190 ETEY---KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSE 246
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK 180
AL + E EGR ++V+ A+ K+
Sbjct: 247 METALETINELELEGRVIRVSLAEGKQ 273
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSP 151
R E T+L N+ W + + F G + ++E M+ + ++RG AFVT+ +
Sbjct: 11 RSEPAPNTKLYVGNIAWNVDSKMLADCFNGVG-ITELEEVMYDRMLGKSRGFAFVTLSTE 69
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK----------NPFPPVQPKPFATFNLFIAN 201
D A A+ L+ +E EGR L+VNY ++ + P P P F+AN
Sbjct: 70 DAAKTAIEKLDGHELEGRPLRVNYPQVPRGGGGFGGGFGTRPSIPANPA-----KCFVAN 124
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
+ + + L+EFF S G VV ++ RS G GFV+F + A AISA G
Sbjct: 125 IPWSVDDQGLQEFFSSHG-TVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDGAE 183
Query: 262 FMGRPLRVA 270
GR +RVA
Sbjct: 184 LGGRSIRVA 192
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + ++ F HGTV+D L+ R+RG+ FVT +PDEA A++ L+ E
Sbjct: 124 NIPWSVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDGAE 183
Query: 166 FEGRTLKVNYA 176
GR+++V A
Sbjct: 184 LGGRSIRVALA 194
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 15/185 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P+T T ++ A F + G+V D+++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQI-IYDKITDRSRGFAFVTMATAEEAAKAVQ 167
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF---------ATFNLFIANLSFEARAKD 210
GRT++VN+ ++ + T+ ++ NL + RA
Sbjct: 168 MFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYAGNLGWGVRADA 227
Query: 211 LREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L+ F EG +V A VIF + RS G+GFVSF + + A+ A+ A G GRPLR+
Sbjct: 228 LKTAF--EGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 285
Query: 270 APSRQ 274
+ + Q
Sbjct: 286 SLAAQ 290
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P++ + L E++G+ IE L ++RG AFVTM ++ +
Sbjct: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ EF GRTL+VN + K P P+ P+ LF+ NLS+ ++ L + F G
Sbjct: 161 NLDGKEFLGRTLRVNLS--DKPKPKEPLYPE--TEHKLFVGNLSWTVTSESLIQVFQEYG 216
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
VV A V++ RS GYGFV + + ETA+ + GR +RV+
Sbjct: 217 -TVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + +F+++GTV+ + + R+RG FV E AL +
Sbjct: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L + E EGR ++V+ A+ K+
Sbjct: 253 LNNVELEGRAIRVSLAEGKR 272
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 15/185 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P+T T ++ A F + G+V D+++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQI-IYDKITDRSRGFAFVTMATAEEAAKAVQ 167
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF---------ATFNLFIANLSFEARAKD 210
GRT++VN+ ++ + T+ ++ NL + RA
Sbjct: 168 MFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYAGNLGWGVRADA 227
Query: 211 LREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L+ F EG +V A VIF + RS G+GFVSF + + A+ A+ A G GRPLR+
Sbjct: 228 LKTAF--EGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 285
Query: 270 APSRQ 274
+ + Q
Sbjct: 286 SLAAQ 290
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 11/186 (5%)
Query: 92 EQREEEYS------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
++ E EY+ + ++ N+P+ E + LF+Q G V E+ + + ++RG
Sbjct: 96 DEGEGEYAAVEPPEEAKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFG 155
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLS 203
FVTM + +EA A+ Y+ GR L VN A + P P+ FA F ++ NL
Sbjct: 156 FVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMERP--PRQFAPAFRAYVGNLP 213
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
++A L + F SE +VV+A V++ RS G+GFV+ SK+ + AISA G+
Sbjct: 214 WQADDSRLVQLF-SEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQELD 272
Query: 264 GRPLRV 269
GRPLRV
Sbjct: 273 GRPLRV 278
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + + LF ++G V++ + + R+RG FVTM S +E A++
Sbjct: 206 RAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISA 265
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 266 LDGQELDGRPLRVNVAAERPQRGF 289
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 6/170 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + + T +E L + R+RG AFVTM + ++ +
Sbjct: 145 TKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIK 204
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ + GRT++VN+A P P + P LF+ NLS+ ++ L E F G
Sbjct: 205 NLDGSLYSGRTMRVNFAD----KPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCG 260
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+VV A V++ RS GYGFV + +K+ + A+S+ G GR +RV
Sbjct: 261 -NVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRV 309
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + +F++ G V+ + + R+RG FV + +E AL++
Sbjct: 237 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 296
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A KK
Sbjct: 297 LNGTELEGREIRVNLALGKK 316
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 10/180 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+P+ ++ LF GTV +E+ ++ K R+RG FVTM S +E AA
Sbjct: 39 KIFVGNLPFNVDSAELAGLFGAAGTVEMVEV-IYDKLTGRSRGFGFVTMSSVEEVEAAAQ 97
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPK--PFATFN-LFIANLSFEARAKDLREFFI 216
+YE +GRTL+V K P V+ + F + N + + NLS++ L+ F
Sbjct: 98 QFNNYELDGRTLRVTEDS-HKDMTLPRVESECDSFGSSNRVHVGNLSWKVDDDALKTLF- 155
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV--APSRQ 274
SE DVV A+VI+ + RS G+GFV++ S TAI + G GR +RV A +RQ
Sbjct: 156 SETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIESLDGVDLNGRSIRVTAAEARQ 215
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S R+ N+ W + ++ LF + G V++ ++ R+RG FVT S +E A
Sbjct: 133 SSNRVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTA 192
Query: 158 LNNLESYEFEGRTLKVNYAKIKKK 181
+ +L+ + GR+++V A+ +++
Sbjct: 193 IESLDGVDLNGRSIRVTAAEARQR 216
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 10/179 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAAL 158
+ +L N+P++ T ++ +FE+ G V E+ +R+RG FVTMGS +EA A+
Sbjct: 112 EGKLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAI 171
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKD 210
+F GR+++VN+ ++ + + P+ + + FI NL + ++
Sbjct: 172 QMFNGTQFGGRSVRVNFPEVPRGGEREVMGPRIQSGYKGFIDSEHKIYAGNLGWRLTSEG 231
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LR+ F ++ V+SA+VI+ + RRS G+GFVSF+S + AE A+ A G+ GRP+R+
Sbjct: 232 LRDAFANQ-PGVLSAKVIYERDSRRSRGFGFVSFESAENAEAALEAMNGEEVEGRPMRL 289
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 11/186 (5%)
Query: 92 EQREEEYS------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLA 144
++ E EY+ + ++ N+P+ E + LF+Q G V E+ + + ++RG
Sbjct: 99 DEGEGEYAAVEPPEEAKVYVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRETGQSRGFG 158
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLS 203
FVTM + +EA A+ Y+ GR L VN A + P P+ FA F ++ NL
Sbjct: 159 FVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMERP--PRQFAPAFRAYVGNLP 216
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
++ L + F SE +VV+A V++ RS G+GFV+ SK+ + AISA G+
Sbjct: 217 WQVDDSRLVQLF-SEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAISALDGQELD 275
Query: 264 GRPLRV 269
GRPLRV
Sbjct: 276 GRPLRV 281
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + R+RG FVTM S +E A++
Sbjct: 209 RAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAISA 268
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 269 LDGQELDGRPLRVNVAAERPQRGF 292
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAA 157
S T+L N+P+ + + + H T +E L + R+RG AFVTM + ++
Sbjct: 131 SATKLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERV 190
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ NL+ + GRT++VN A K P P+ P+ LF+ NLS+ + L + F
Sbjct: 191 IKNLDGTLYSGRTMRVNMAD--KPKPKEPLYPE--TEHKLFVGNLSWTVTPEMLTDAFQQ 246
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G DVV A V++ RS GYGFV + +K+ + AI G GR +RV
Sbjct: 247 CG-DVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRV 297
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F+Q G V+ + + R+RG FV + +E A+
Sbjct: 225 KLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 284
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A K+
Sbjct: 285 LNGTEIEGREIRVNLALGKR 304
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 9/194 (4%)
Query: 82 DSSSAAAVNTEQREEEY----SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
D+ A+A ++ EY + ++ N+P+ E + LFEQ G V E+ + +
Sbjct: 93 DAVEASAAVEDEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRE 152
Query: 138 -NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFATF 195
+R+RG FVTM + +EA A+ L Y+ GR L VN A + + PP Q P +
Sbjct: 153 TDRSRGFGFVTMSTVEEADKAVEMLHRYDVNGRLLTVNKAAPRGSRVDRPPRQSGP--SL 210
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+++ NL ++ L + F SE VV A V++ RS G+GFV+ ++ + AI+
Sbjct: 211 RIYVGNLPWQVDDSKLVQMF-SEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIA 269
Query: 256 AFQGKLFMGRPLRV 269
A G+ GR LRV
Sbjct: 270 ALDGQSLDGRALRV 283
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+D + + R+RG FVTM + DE A+
Sbjct: 211 RIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIAA 270
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR L+VN A+ + + F
Sbjct: 271 LDGQSLDGRALRVNVAEERPRRSF 294
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+PW E++ LFE+ G+V E+ + + N++RG FV M + ++ ALN
Sbjct: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAKDLR 212
YE +GR L VN A K+ P P P+ F + ++++ NL + A L
Sbjct: 181 FSGYELDGRVLTVNKATPKEARPERP--PRTFGSGSGSRDSGLSVYVGNLPWSVDAARLE 238
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G +V +A ++ RS G+GFV+ S+ AI+A G+ GR +RV+
Sbjct: 239 EIFREHG-NVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW+ + +F +HG V + + M + R+RG FVTM S + A+ L+
Sbjct: 227 NLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQS 286
Query: 166 FEGRTLKVNYAK 177
+GRT++V+ A+
Sbjct: 287 LDGRTIRVSVAE 298
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 6/170 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + + T +E L + R+RG AFVTM + ++ +
Sbjct: 147 TKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIK 206
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ + GRT++VN+A P P + P LF+ NLS+ ++ L E F G
Sbjct: 207 NLDGSLYSGRTMRVNFAD----KPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCG 262
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+VV A V++ RS GYGFV + +K+ + A+S+ G GR +RV
Sbjct: 263 -NVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRV 311
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + +F++ G V+ + + R+RG FV + +E AL++
Sbjct: 239 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 298
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A KK
Sbjct: 299 LNGTELEGREIRVNLALGKK 318
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
RL N+P+T T ++ LF + G V+D+++ +R+RG FVTMG+ +EA A+
Sbjct: 118 RLYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGTIEEAKEAIQM 177
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAKDLR 212
S + GRT+KVN ++ + ++ K + ++ NL + ++ L+
Sbjct: 178 FNSSQIGGRTVKVNLPEVPRGGEREVMRTKIRDNNRSYVDSPHKIYAGNLGWNLTSQGLK 237
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ F + V+ A+VI+ N RS G+GF+SF+S + ++A++ G GR LR+
Sbjct: 238 DAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSALATMNGVEVEGRALRL 293
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 33/187 (17%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P T T++++ + ++HG V E+ M+ K R+R AFVTM + ++ATA +
Sbjct: 71 RLYVGNIPRTVTNDELAKIVQEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTVEDATAVIE 129
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL-----------------FIANL 202
L E GR +KVN V KP +T +L ++ NL
Sbjct: 130 KLNGTELGGREIKVN------------VTEKPLSTLDLPLLQAEESEFIDSPHKVYVGNL 177
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
+ L+ FF SE V+SA+V +S+GYGFV+F S++ E AIS+F L
Sbjct: 178 AKTVTTDTLKNFF-SEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSLL 236
Query: 263 MGRPLRV 269
G+ +RV
Sbjct: 237 EGQTIRV 243
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAALNN 160
++ N+ T T + ++ F + G VL ++S + +++ G FVT S ++ AA+++
Sbjct: 171 KVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISS 230
Query: 161 LESYEFEGRTLKVNYA 176
+ EG+T++VN A
Sbjct: 231 FNNSLLEGQTIRVNKA 246
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN----RGLAFVTMGSPDEAT 155
+ +L N+P+ + + LFEQ GTV E+S NR+ RG FVTM + +EA
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTV---EISEVIYNRDTDQSRGFGFVTMSTVEEAK 168
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-ATFNLFIANLSFEARAKDLREF 214
A+ YE GR L VN A + P QP+ + A F +++ NL ++ L++
Sbjct: 169 KAVEKFNRYEVNGRLLTVNIAAPRGSR--PERQPRQYDAAFRIYVGNLPWDVDNDRLQQV 226
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F SE VV A V++ RS G+GFV+ ++ AI+A G+ GR ++V
Sbjct: 227 F-SEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAALDGQNLEGRAIKV 280
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW ++ ++ +F +HG V+D + + R+RG FVTM + +E A+
Sbjct: 208 RIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAA 267
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ EGR +KVN A+ + + F
Sbjct: 268 LDGQNLEGRAIKVNVAEERPRRGF 291
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 14/197 (7%)
Query: 91 TEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVT 147
++ E+ +S+ +L N+P+ + LFE G V +E+ ++ K R+RG FVT
Sbjct: 79 SDGDEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEV-IYDKVTGRSRGFGFVT 137
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN----LFIANLS 203
M + +E AA YE +GRTL+VN+ +K P+ TF+ +++ NLS
Sbjct: 138 MTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQKESSFSRGPRGGETFDSGNRVYVGNLS 197
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
+ L F +G V+ A+V++ + RS G+GFV++ S + + AI + G
Sbjct: 198 WNVDNLALETLFREKGR-VMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELD 256
Query: 264 GRPLRVA-----PSRQF 275
GR +RV+ P RQF
Sbjct: 257 GRAIRVSVAEAKPRRQF 273
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 15/185 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P+T T ++ ++F + G+V D+++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 122 RIYVGNLPYTFTAAELTSVFSEAGSVDDVQI-IYDKITDRSRGFAFVTMATAEEAAKAVQ 180
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPF---------PPVQPKPFATFNLFIANLSFEARAKD 210
GRT++VN+ ++ + ++ T+ ++ NL + RA
Sbjct: 181 MFNGALLGGRTIRVNFPEVPRGGERAVASAAAAKTSLRVVDDGTYKVYAGNLGWGVRADA 240
Query: 211 LREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L+ F EG ++ + VIF + RS G+GFVSF++ + A AI A G GRPLR+
Sbjct: 241 LKTAF--EGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQAMDGVELDGRPLRL 298
Query: 270 APSRQ 274
+ + Q
Sbjct: 299 SLASQ 303
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + +E L ++RG AFVTM + ++ ++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ E+ GR LKVN+A K N P P LF+ NLS+ ++ L F E
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPNKEPLY---PETEHKLFVGNLSWTVTSESLAGAF-REC 200
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
DVV A V+F + RS GYGFV + SK ETA+ + G GR +RV
Sbjct: 201 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + G V+ + R+RG FV S E AL +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L+ +E EGR ++VN A+ KK
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ T E + LF+Q GTV E+ +++ + +RG FVTM + +E+ A+
Sbjct: 115 EAKIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVEESDKAI 174
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y +GR L VN A + P PP +P ++ +++ NL + + L E F S
Sbjct: 175 EMFNRYNLDGRLLTVNKAAPRGSRPERPPRVSEP--SYRIYVGNLPWGVDSGRLEEVF-S 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VVSA+V+ RS G+GFV+ S+ AI+A G+ GR +RV
Sbjct: 232 EHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDGQELDGRAIRV 283
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+ ++ S R+RG FVTM S E A+
Sbjct: 211 RIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAA 270
Query: 161 LESYEFEGRTLKVNYA 176
L+ E +GR ++VN A
Sbjct: 271 LDGQELDGRAIRVNVA 286
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 120/263 (45%), Gaps = 35/263 (13%)
Query: 31 VSLLQKQQKQHYNYFFPLSSSPFHAYTFPITPK---KVSPFVFHFSATTQDPFVDSSSAA 87
VSLL H N PLS S F ++ + K K SPFV F A T D + +
Sbjct: 43 VSLLTG----HIN--LPLSFSRFSRFSLSLKSKTHLKKSPFV-SFVAQTSD-WAEEGGEG 94
Query: 88 AVNTEQREEEYS-------------------KTRLVAQNVPWTSTHEDIRALFEQHGTVL 128
+V E+ E+ + + +L N+ + + + LFEQ GTV
Sbjct: 95 SVAVEENEDSFESQDAEGDVSEGAEFPEPSEEAKLFVGNLAYDVDSQALAMLFEQAGTVE 154
Query: 129 DIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV 187
E+ + + +++RG FVTM + +EA A+ Y+ GR L VN K + P
Sbjct: 155 IAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVN--KAAPRGSRPER 212
Query: 188 QPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
P+ + F +++ NL ++ L + F SE VV A V++ RS G+GFV+ +
Sbjct: 213 APRVYEPAFRVYVGNLPWDVDNGRLEQVF-SEHGKVVEARVVYDRETGRSRGFGFVTMSN 271
Query: 247 KKVAETAISAFQGKLFMGRPLRV 269
+ AI+A G+ GR +RV
Sbjct: 272 ENELNDAIAALDGQNMEGRAIRV 294
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG V++ + + R+RG FVTM + +E A+
Sbjct: 222 RVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAA 281
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ EGR ++VN A+ + + F
Sbjct: 282 LDGQNMEGRAIRVNVAEERPRRGF 305
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 34/241 (14%)
Query: 45 FFPLSSSPFHAYTFPITPKKVSP---------FVFHFSATTQDPFVDSSSAAAVNTEQRE 95
F L+ + H F + PK +P F HF +++ VDS +
Sbjct: 10 FLSLTHNNTHT-NFTLKPKTTTPSSLVVTTRRFRKHFVVSSEQATVDSPALR-------- 60
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
+L N+P T +++++ + ++HG V E+ M+ K R+R AFVTM + ++
Sbjct: 61 ------KLYVGNIPRTVSNDELEKIVQEHGAVEKAEV-MYDKYSKRSRRFAFVTMKTVED 113
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA L E GR +KVN + PVQ +TF +++ NL+ +
Sbjct: 114 ANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGE-STFVDSPYKVYVGNLAKNVTS 172
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
L++FF SE + +SA+V +S+G+GFV+F S + E AIS+F L G+ +R
Sbjct: 173 DSLKKFF-SEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIR 231
Query: 269 V 269
V
Sbjct: 232 V 232
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 34/241 (14%)
Query: 45 FFPLSSSPFHAYTFPITPKKVSP---------FVFHFSATTQDPFVDSSSAAAVNTEQRE 95
F L+ + H F + PK +P F HF +++ VDS +
Sbjct: 10 FLSLTHNNTHT-NFTLKPKTTTPSSLVVTTRRFRKHFVVSSEQATVDSPALR-------- 60
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
+L N+P T +++++ + ++HG V E+ M+ K R+R AFVTM + ++
Sbjct: 61 ------KLYVGNIPRTVSNDELEKIVQEHGAVEKAEV-MYDKYSKRSRRFAFVTMKTVED 113
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA L E GR +KVN + PVQ +TF +++ NL+ +
Sbjct: 114 ANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGE-STFVDSPYKVYVGNLAKNVTS 172
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
L++FF SE + +SA+V +S+G+GFV+F S + E AIS+F L G+ +R
Sbjct: 173 DSLKKFF-SEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIR 231
Query: 269 V 269
V
Sbjct: 232 V 232
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 21/187 (11%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +E AA+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPP----VQPKPFATFN-LFIANLSFEARAKDLREF 214
Y +GR+L+VN P PP Q P N +++ NLS+ L
Sbjct: 146 QFNGYILDGRSLRVN------SGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANL 199
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA---- 270
F EG +V+ A+VI+ RS G+GFV++ S + E A+S G GR +RV
Sbjct: 200 FSGEG-EVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAES 258
Query: 271 --PSRQF 275
P RQ+
Sbjct: 259 KPPRRQY 265
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMG 149
+ QR R+ N+ W + + LF G VL+ ++ R+RG FVT G
Sbjct: 170 SSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYG 229
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIK 179
S +E A++NL+ + +GR ++V A+ K
Sbjct: 230 SAEEVENAVSNLDGADMDGRQIRVTVAESK 259
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
R N+ W + E + A Q GTV+ E++ R++G V +PD A +A+N L
Sbjct: 110 RCYVGNLAWETNEESLIAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTL 169
Query: 162 ESYEFEGRTLKVNYAKIKKKN-PFPPVQPKPFATFNLFIA--NLSFEARAKDLREFFISE 218
+ + +GR++ V + N P +P A+ L I NL + ++DLR+ F
Sbjct: 170 HNSDLQGRSIIVRLERAGGANKSGGPNAGRPEASSGLQIVVRNLPWSTTSEDLRQVFQQV 229
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
G V+ AE + H + RS G+G V F++++ A+ AI F G RP+++ R
Sbjct: 230 G-TVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKLDR 283
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 10/181 (5%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E RL N+PW++T +++R +F GT+ +++ + R+RG V + +EA
Sbjct: 3 EGPTNRLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQV 62
Query: 157 ALNNLESYEFEGRTLKVNYAKI-------KKKNPFPPVQPKPFA-TFNLFIANLSFEARA 208
A+ L+ + R + V K K + P A ++ NL++E
Sbjct: 63 AIQTLDGHTLGDRNITVREDKAPTKSAPSKSGGNRSTIGDTPAADGCRCYVGNLAWETNE 122
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
+ L G VV AEV RS G+G V F++ A +AI+ GR +
Sbjct: 123 ESLIAHCSQVG-TVVQAEVAKQPGG-RSKGWGLVDFETPDAANSAINTLHNSDLQGRSII 180
Query: 269 V 269
V
Sbjct: 181 V 181
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPD 152
R E S ++V +N+PW++T ED+R +F+Q GTV+ E H+ R++G V + +
Sbjct: 199 RPEASSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETRE 258
Query: 153 EATAALNNLESYEFEGRTLKV 173
+A AA+ E E R +++
Sbjct: 259 QAQAAIQGFNGVELEHRPMQI 279
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 121/268 (45%), Gaps = 29/268 (10%)
Query: 32 SLLQKQQKQHYNYFFPLSSSPFHAYTFPITPKKV---SPFVFHFSATT--------QDPF 80
S+ + + + F LSS P + T + K + SP V S T+ +D
Sbjct: 28 SIFNISSSESHRFNFSLSSRPVN-LTLSLKSKTLRNSSPVVTFVSQTSNWAEEEEGEDGS 86
Query: 81 VDSSSAAAVNTEQREEEYS------KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM 134
+ +S + + E+ + +L N+P+ + + LFEQ GTV E+S
Sbjct: 87 IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTV---EISE 143
Query: 135 HSKNRN----RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
NR+ RG FVTM + +EA A+ S+E GR L VN A + P QP+
Sbjct: 144 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA--APRGSRPERQPR 201
Query: 191 PF-ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+ A F +++ NL ++ + L F SE VV A V+ RS G+GFV ++
Sbjct: 202 VYDAAFRIYVGNLPWDVDSGRLERLF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260
Query: 250 AETAISAFQGKLFMGRPLRVAPSRQFAR 277
AI+A G+ GR ++V + + R
Sbjct: 261 VNVAIAALDGQNLEGRAIKVNVAEERTR 288
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 8/174 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P TST+E++ +F + G V E+ M+ K R+R AFVTM + ++A AA+
Sbjct: 74 RLYVGNIPRTSTNEELAKIFGECGNVEKAEV-MYDKYTKRSRRFAFVTMSTVEDAQAAIE 132
Query: 160 NLESYEFEGRTLKVNYAK----IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+ E GR +KVN + + N + + +++ NL+ + L++ F
Sbjct: 133 KMNGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFIDSPYKVYVGNLAKAVTTETLKKKF 192
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+G +V+ A+V +S GYGFVSF S+ E AISAF + G+P+RV
Sbjct: 193 AEKG-NVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVVLEGKPMRV 245
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 4/172 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N P+ E + LF Q GTV E+ + + + +RG FVTM + +EA +A+
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEK 169
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ-PKPFA-TFNLFIANLSFEARAKDLREFFISE 218
Y++ GR+L VN A K P + P+ F +++ANL++E L + F SE
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF-SE 228
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+VSA V++ RS G+GFV+ + AI+A G+ GR +RV+
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVS 280
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + +F +HG ++ + + R+RG FVTM E A+
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ EGRT++V+ A+ + +
Sbjct: 267 LDGQSLEGRTIRVSVAEDRPR 287
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
+L N+P+ T + +F + G V+ +++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 116 KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQV-IYDKVTDRSRGFAFVTMATLEEAKEAIR 174
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDL 211
+ + GRT++VN+ ++ + + P+ +++N F+ NL + ++ L
Sbjct: 175 MFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 234
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
R+ F ++ ++SA++I+ +S G+GFVSF++ + AE+A+ + G GRPLR+
Sbjct: 235 RDAFENQ-PGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRL 291
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S ++ A N+ W T + +R FE +L ++ + ++RG FV+ + ++A +A
Sbjct: 216 SPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESA 275
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
L ++ E EGR L++N A + P+ P F
Sbjct: 276 LESMNGVEVEGRPLRLNIAAGQS-----PISPAAF 305
>gi|8163877|gb|AAF73892.1|AF224345_1 enhancer binding protein-1 [Entamoeba histolytica]
Length = 247
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 13/195 (6%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN----RNRGLAFVTM 148
+R E + L +N+P+ T E ++ +F + G V + H K +N G+AF+T+
Sbjct: 46 KRTNEVTDNMLFIKNLPFAITEEKLKEMFSKFGVVEITLIKTHRKKGNVTKNNGIAFITV 105
Query: 149 GSPDEATAALNNLESYEFEGRTLKV--NYAKIKKKNPFPPV-QPKPFATFNLFIANLSFE 205
+ +E A+ ++++E EGR + V Y K++ K +PK + N+F+ NL F
Sbjct: 106 KTAEEQKKAIAEMDNFEVEGRKITVAAAYKKVENKQTTKKTNEPKSLSETNVFVKNLPFT 165
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR----RSAGYGFVSFKSKKVAETAISAFQGKL 261
+ ++ F E +DVV A ++ N + RS GYGFV+FK+ + + AI+
Sbjct: 166 LTDEGFKKLF--EKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIAEMDNFE 223
Query: 262 FMGRPLRVAPSRQFA 276
GR + V + Q A
Sbjct: 224 VEGRKITVTSAYQRA 238
>gi|67471742|ref|XP_651783.1| enhancer binding protein-1 [Entamoeba histolytica HM-1:IMSS]
gi|56468563|gb|EAL46397.1| enhancer binding protein-1 [Entamoeba histolytica HM-1:IMSS]
gi|449709038|gb|EMD48384.1| enhancer binding protein, putative [Entamoeba histolytica KU27]
Length = 306
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 13/195 (6%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN----RNRGLAFVTM 148
+R E + L +N+P+ T E ++ +F + G V + H K +N G+AF+T+
Sbjct: 105 KRTNEVTDNMLFIKNLPFAITEEKLKEMFSKFGVVEITLIKTHRKKGNVTKNNGIAFITV 164
Query: 149 GSPDEATAALNNLESYEFEGRTLKV--NYAKIKKKNPFPPV-QPKPFATFNLFIANLSFE 205
+ +E A+ + ++E EGR + V Y K++ K +PK + N+F+ NL F
Sbjct: 165 KTAEEQKKAIAEMNNFEVEGRKITVAAAYKKVENKQTTKKTNEPKSLSETNVFVKNLPFT 224
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR----RSAGYGFVSFKSKKVAETAISAFQGKL 261
+ ++ F E +DVV A ++ N + RS GYGFV+FK+ + + AI+
Sbjct: 225 LTDEGFKKLF--EKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIAEMDNFE 282
Query: 262 FMGRPLRVAPSRQFA 276
GR + V + Q A
Sbjct: 283 VEGRKITVTSAYQRA 297
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 5/171 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +E A++
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVEEVEVAVD 142
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFISE 218
Y +GR+L+VN ++ P +P N +++ NLS+ L F SE
Sbjct: 143 QFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDNSALANLF-SE 201
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+V+ A +I+ RS G+GFV++ S + E AIS G GR +RV
Sbjct: 202 QGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 252
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + LF + G VL+ + R+RG FVT GS +E A++N
Sbjct: 180 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 239
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
L+ + +GR ++V A+ K PP Q
Sbjct: 240 LDGADLDGRQIRVTVAESK-----PPRQ 262
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 5/171 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +E A++
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVEEVEVAVD 140
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFISE 218
Y +GR+L+VN ++ P +P N +++ NLS+ L F SE
Sbjct: 141 QFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDNSALANLF-SE 199
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+V+ A +I+ RS G+GFV++ S + E AIS G GR +RV
Sbjct: 200 QGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 250
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + LF + G VL+ + R+RG FVT GS +E A++N
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 237
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
L+ + +GR ++V A+ K PP Q
Sbjct: 238 LDGADLDGRQIRVTVAESK-----PPRQ 260
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ + E + LF++ G V E+ + + +++RG FVTM + +EA A+
Sbjct: 29 QAKLFVGNIPYDDS-EKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAV 87
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
L Y+ GR L VN A + P P + P + +++ NL ++ L + F SE
Sbjct: 88 EMLHRYDINGRNLTVNKAAPRGSRPERPRESDP--SLRVYVGNLPWQVDDSRLEQLF-SE 144
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+ A V++ RS G+GFV+ +++ + AI+A G+ GR LRV
Sbjct: 145 HGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRV 195
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + + R+RG FVT+ + +E A+
Sbjct: 123 RVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAA 182
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR L+VN A+
Sbjct: 183 LDGQSLEGRALRVNVAE 199
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 94/163 (57%), Gaps = 12/163 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T + +F + GTV ++E+ +R+RG AFVTMGS +EA A+
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLSFEARAKDLR 212
+ + GRT+KVN+ ++ + + K +T+ L++ANLS+ ++ LR
Sbjct: 164 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 223
Query: 213 EFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+ F + G+ +SA+VI+ + RS G+GF++F S + ++A+
Sbjct: 224 DAFADQPGF--MSAKVIYDRSSGRSRGFGFITFSSAEAMKSAL 264
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL F + L E F +E V + E+++ RS G+ FV+ S + A+ AI
Sbjct: 105 LYVGNLPFSMTSSQLSEIF-AEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 257 FQGKLFMGRPLRV 269
F G GR ++V
Sbjct: 164 FDGSQVGGRTVKV 176
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 10/192 (5%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGL 143
A A Q ++ +L N+P +E++ + ++HG V E+ M+ K R+R
Sbjct: 59 AVAEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEV-MYDKYSGRSRRF 117
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN----PFPPVQPKPF--ATFNL 197
AFVTM + ++A AA+ L E GR +KVN + N F + F + + +
Sbjct: 118 AFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKV 177
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ N+S + L+ FF SE V+SA+V +S+GYGFV+F S++ + AIS+F
Sbjct: 178 YVGNISSTVSTETLKNFF-SEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSF 236
Query: 258 QGKLFMGRPLRV 269
L G+P+RV
Sbjct: 237 NNALLEGQPIRV 248
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-M 134
T+ P V++ + + E+ + S ++ N+ T + E ++ F + G VL ++S +
Sbjct: 150 TEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRV 209
Query: 135 HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
+++ G FVT S +E AA+++ + EG+ ++VN A
Sbjct: 210 PGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 251
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 23/188 (12%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +E AA+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQ------PKPFATFNLFIANLSFEARAKDLRE 213
Y +GR+L+VN P PP + P+ A +++ NLS+ L
Sbjct: 146 QFNGYILDGRSLRVN------SGPPPPREQSSRRAPRGEAN-RVYVGNLSWGVDNAALAN 198
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA--- 270
F EG +V+ A+VI+ RS G+GFV++ S + E A+S G GR +RV
Sbjct: 199 LFSGEG-EVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAE 257
Query: 271 ---PSRQF 275
P RQ+
Sbjct: 258 SKPPRRQY 265
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMG 149
+ +R R+ N+ W + + LF G VL+ ++ R+RG FVT G
Sbjct: 170 SSRRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYG 229
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIK 179
S +E A++NL+ + +GR ++V A+ K
Sbjct: 230 SAEEVENAVSNLDGADMDGRQIRVTVAESK 259
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 5/172 (2%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE--LSMHSKNRNRGLAFVTMGSPDEATAAL 158
+R+ N+ W E++ + +Q G + +E + R+RG +VT+ S D A A+
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 159 NNLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+ + +GR LK +Y++ KK PV+ T +FI NL + L EFF +
Sbjct: 61 QKLDGHIVQGRALKASYSQPYKKAGKEGPVEVAASHT-KVFIGNLPWGVDDGSLEEFFRA 119
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G VV ++++ + RS G+GFV+ S K A+ A+ + G GR LRV
Sbjct: 120 HG-KVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRV 170
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S T++ N+PW + F HG V+++++ R+RG FVT+ SP EA A
Sbjct: 95 SHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEA 154
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ +L+ + +GR L+V A
Sbjct: 155 VKSLDGADCDGRRLRVKLA 173
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NLS+ +++L + G EV+ RS G+G+V+ S A+ A+
Sbjct: 3 IYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQK 62
Query: 257 FQGKLFMGRPLRVAPSRQFARLQTKEG 283
G + GR L+ + S+ + + KEG
Sbjct: 63 LDGHIVQGRALKASYSQPYKK-AGKEG 88
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 12/167 (7%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
T + +F + GTV+ +E+ M+ + +R+RG AFVTMGS D+A A+ + + GR
Sbjct: 2 TSSQLTEIFVEAGTVVSVEV-MYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRI 60
Query: 171 LKVNYAKIKKKNPFPPVQPKPF--------ATFNLFIANLSFEARAKDLREFFISEGWDV 222
++VN+ ++ K + PK ++ ++ NL + ++DL++ F +E +
Sbjct: 61 VRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVF-AEQPGL 119
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
VSA+VI+ + RS G+GFV+F++ + E A+ G GR LR+
Sbjct: 120 VSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 166
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALF-EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA 157
S ++ A N+ W + +D++ +F EQ G V + R+RG FVT + + AA
Sbjct: 91 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 150
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
L + E +GR L++N A +K
Sbjct: 151 LKTMNGVEVQGRELRLNLAAVK 172
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 128/279 (45%), Gaps = 25/279 (8%)
Query: 1 MSLLRLYCCFPSTSYLYTEPQQQQSHEAPFVSLLQKQQKQHYNYFFP----LSSSPFHAY 56
M+ RL + +T+ ++ S ++PF+S+ K K ++ FP L +S F +
Sbjct: 1 MAETRLMSVYRTTNTVF-----DTSIKSPFISITSKPIKVVFSTSFPSWVSLKTSNFSTF 55
Query: 57 -TFPITPKKVSPFVFHFSATT----QDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWT 111
T P+ + S + T ++ F D S + +L N+P+
Sbjct: 56 NTIPLVAQ-TSDWAQQDEEDTVTLGEESFGDGSEETFPEPP------EEAKLYVGNLPYD 108
Query: 112 STHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
E++ LF+Q GTV E+ + + +++RG FVTM + DEA A+ Y+ GR
Sbjct: 109 VNSENLAQLFDQAGTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRF 168
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
L VN A + P P K + +++ NL ++ L + F SE VV+A V+
Sbjct: 169 LTVNKAAPRGSRPERPSVFK--IAYRIYVGNLPWQVDDARLEQVF-SEHGQVVNARVVCD 225
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
RS G+GFV+ S+ AI+A G+ GR + V
Sbjct: 226 RETGRSRGFGFVTMSSETELNDAIAALDGQSLDGRAITV 264
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM S E A+
Sbjct: 192 RIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSSETELNDAIAA 251
Query: 161 LESYEFEGRTLKVNYAK 177
L+ +GR + VN A+
Sbjct: 252 LDGQSLDGRAITVNIAQ 268
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query: 96 EEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPD 152
+E+S+ R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM S +
Sbjct: 75 DEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSSVE 133
Query: 153 EATAALNNLESYEFEGRTLKVNYAKI--KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
E A++ Y +GR+L+VN + ++ P +P+ A +++ NLS+
Sbjct: 134 EVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSRSPQRPRGDAN-RVYVGNLSWGVDNSA 192
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L F SE +V+ A +I+ RS G+GFV++ S + E AIS G GR +RV
Sbjct: 193 LANLF-SEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 250
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + LF + G VL+ + R+RG FVT GS +E A++N
Sbjct: 178 RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISN 237
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
L+ + +GR ++V A+ K PP Q
Sbjct: 238 LDGADLDGRQIRVTVAESK-----PPRQ 260
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + +F+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 107 EAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAI 166
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P + FA F ++ NL ++ L + F S
Sbjct: 167 EMFSRYDISGRLLNVNRASSRGTRMERP--QRQFAPAFRAYVGNLPWQVDDSRLVQLF-S 223
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E +VV A+V++ RS G+GFVS SK+ AISA G+ GRPLRV
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRV 275
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 81 VDSSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N 138
V+ +S+ E+ + +++ R N+PW + LF +HG V+D ++ +
Sbjct: 181 VNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETG 240
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF 184
R+RG FV+M S +E A++ L+ E +GR L+VN A + + F
Sbjct: 241 RSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAERPQRGF 286
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + +F+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 107 EAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAI 166
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P + FA F ++ NL ++ L + F S
Sbjct: 167 EMFNRYDISGRLLNVNRASSRGTRMERP--QRQFAPAFRAYVGNLPWQVDDSRLVQLF-S 223
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E +VV A+V++ RS G+GFVS SK+ AISA G+ GRPLRV
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRV 275
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 81 VDSSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N 138
V+ +S+ E+ + +++ R N+PW + LF +HG V+D ++ +
Sbjct: 181 VNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETG 240
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF 184
R+RG FV+M S +E A++ L+ E +GR L+VN A + + F
Sbjct: 241 RSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAERPQRGF 286
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 142 EAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAV 201
Query: 159 NNLESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y+ +GR L VN A + + PP Q P +F +++ NL ++ L + F S
Sbjct: 202 EMFHRYDVDGRLLTVNKAAPRGARVERPPRQFGP--SFRIYVGNLPWQVDDSRLVQLF-S 258
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ +++ + AI+A G+ GR LRV
Sbjct: 259 EHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRV 310
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + + R+RG FVTM + +E A+
Sbjct: 238 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 297
Query: 161 LESYEFEGRTLKVNYAK 177
L+ +GR L+VN A+
Sbjct: 298 LDGQSLDGRALRVNVAE 314
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 14/181 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+PW + + ++ G+V +E+ + R+RG AFVTM + ++A +
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 161 LESYEFEGRTLKVNYAKIKKKNP-FPPVQ--------PKPFATFN---LFIANLSFEARA 208
L+ ++ GR LKV++ + K+ P FP + P+P A + +F+ NLS+
Sbjct: 61 LDGHDVGGRPLKVSFPQSKQNRPSFPRGEGYQRSERAPRPAARDDPNKVFVGNLSWGVDN 120
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
L+E F G VV A V++ RS G+GFV++ + AI + G F GR LR
Sbjct: 121 GALQELFSDYG-KVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDSLDGAEFDGRELR 179
Query: 269 V 269
V
Sbjct: 180 V 180
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
++ N+ W + ++ LF +G V+D + + R+RG FVT E AA++
Sbjct: 107 NKVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAID 166
Query: 160 NLESYEFEGRTLKVNYAKIK 179
+L+ EF+GR L+VN A K
Sbjct: 167 SLDGAEFDGRELRVNLAGNK 186
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L+I NL ++ + L E V EVI+ RS G+ FV+ +++ AE I
Sbjct: 2 LYIGNLPWQCDSAQL-AGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 257 FQGKLFMGRPLRVA 270
G GRPL+V+
Sbjct: 61 LDGHDVGGRPLKVS 74
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE--LSMHSKNRNRGLAFVTMGSPDEATAAL 158
+R+ N+ W E++ + +Q G + +E + R+RG +VT+ S D A A+
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 159 NNLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+ + +GR LK ++++ KK PV+ T +FI NL + L EFF +
Sbjct: 61 QKLDGHIVQGRALKASFSQPYKKAGKEGPVEVAASHT-KVFIGNLPWGVDDGSLEEFFRA 119
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G VV A++++ + RS G+GFV+ S K A+ A+ + G GR LRV
Sbjct: 120 HG-KVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRV 170
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S T++ N+PW + F HG V++ ++ R+RG FVT+ SP EA A
Sbjct: 95 SHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEA 154
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ +L+ + +GR L+V A
Sbjct: 155 VKSLDGADCDGRRLRVKLA 173
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NLS+ +++L + G EV+ RS G+G+V+ S A+ A+
Sbjct: 3 IYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQK 62
Query: 257 FQGKLFMGRPLRVAPSRQFARLQTKEG 283
G + GR L+ + S+ + + KEG
Sbjct: 63 LDGHIVQGRALKASFSQPYKK-AGKEG 88
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 6 EAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAV 65
Query: 159 NNLESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y+ +GR L VN A + + PP Q P +F +++ NL ++ L + F S
Sbjct: 66 EMFHRYDVDGRLLTVNKAAPRGARVERPPRQFGP--SFRIYVGNLPWQVDDSRLVQLF-S 122
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ +++ + AI+A G+ GR LRV
Sbjct: 123 EHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRV 174
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + + R+RG FVTM + +E A+
Sbjct: 102 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 161
Query: 161 LESYEFEGRTLKVNYAK 177
L+ +GR L+VN A+
Sbjct: 162 LDGQSLDGRALRVNVAE 178
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ H+ + LF+Q GTV E+ + + +++RG FVTM + +EA A+
Sbjct: 120 EAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAV 179
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P+ F F +++ NL ++ L + F S
Sbjct: 180 EMFNRYDINGRLLTVNKAAPRGARVDRP--PRAFEPAFRMYVGNLPWQVDDARLEQVF-S 236
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ ++ + AI+A G+ GR +RV
Sbjct: 237 EHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRV 288
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V++ + + R+RG FVTM + E A+
Sbjct: 216 RMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAA 275
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A+ + +
Sbjct: 276 LDGQSLDGRAIRVNVAEDRPR 296
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 183 PFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV 242
P PP + K LF+ NL ++ + L E F G V AEVI++ +S G+GFV
Sbjct: 115 PLPPEEAK------LFVGNLPYDVDHQALAELFDQAG-TVEVAEVIYNRETDQSRGFGFV 167
Query: 243 SFKSKKVAETAISAFQGKLFMGRPLRV 269
+ + + AE A+ F GR L V
Sbjct: 168 TMSTVEEAEKAVEMFNRYDINGRLLTV 194
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 7/178 (3%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDE 153
EE ++ N+P+ E + LFEQ GTV E+ + +R+RG FVTM + +E
Sbjct: 116 EEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEE 175
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV-QPKPF-ATFNLFIANLSFEARAKDL 211
A+N +E +GR L VN A + P + QP+ F + ++ NL ++ L
Sbjct: 176 VERAVNKFSGFELDGRLLTVNNAAPRGT---PRLRQPRTFNSGLRAYVGNLPWDVDNSSL 232
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ F SE V SA+V++ R G+GFV+ ++ AI+A G+ F GR +RV
Sbjct: 233 EQLF-SEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R N+PW + + LF +HG V ++ + R RG FVTM + E A
Sbjct: 214 SGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDA 273
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
+ L+ F GR ++VN A+ + + F
Sbjct: 274 IAALDGQSFNGRAIRVNVAEERPRRSF 300
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 9/181 (4%)
Query: 95 EEEYSK----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMG 149
E+ YS+ +L N+P+ E + LF++ G V E+ + + +++RG F+TM
Sbjct: 83 EDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMS 142
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARA 208
+ +EA A+ Y+ GR L VN A + P P P+ F +F +++ NL ++
Sbjct: 143 TVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERP--PQAFEPSFRIYVGNLPWQVDD 200
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
L + F SE VV A V++ + +RS G+GFV+ S+ AI+A G+ GR +R
Sbjct: 201 ARLEQVF-SEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIR 259
Query: 269 V 269
V
Sbjct: 260 V 260
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+D + R+RG FVTM S E A+
Sbjct: 188 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 247
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A+ + +
Sbjct: 248 LDGQSLDGRAIRVNVAEERPR 268
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 19/206 (9%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P+T T +I F + G V ++++ ++ K +R+RG AFVTM + +EA A+
Sbjct: 119 RLFVGNLPYTMTSGEISQTFSEAGRVDNVQI-IYDKVTDRSRGFAFVTMATAEEAATAIQ 177
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQP-------KPFATFNLFIANLSFEARAKDLR 212
GRT +VNY ++ + + TF ++ NL + RA LR
Sbjct: 178 MFNGALLGGRTARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALR 237
Query: 213 EFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
F EG ++ A VIF + RS G+GFVSF++ + A+ A+ A G GRPLR++
Sbjct: 238 AAF--EGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSM 295
Query: 272 SRQF------ARLQTKEGLHSDETSD 291
+ Q + +Q++E + E+SD
Sbjct: 296 AEQNPTAGSPSTVQSQEEETASESSD 321
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRG 142
SAAA +R++ K + A N+ W + +RA FE +LD + R+RG
Sbjct: 205 GSAAATRENRRDDGTFK--IYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRG 262
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP 183
FV+ + ++A AAL L+ E EGR L+++ A ++NP
Sbjct: 263 FGFVSFRTAEDAQAALEALDGVELEGRPLRLSMA---EQNP 300
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LF+Q G V E+ + + +++RG FVTM + +EA A+
Sbjct: 124 EAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAV 183
Query: 159 NNLESYEFEGRTLKVNYAKIK-KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + + PP Q P + +++ NL ++ L E F S
Sbjct: 184 EMFHRYDVNGRLLTVNKAAPRGSRVDRPPRQSGP--SLRIYVGNLPWQVDDSRLVELF-S 240
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ S+ + AI+A G+ GR LRV
Sbjct: 241 EHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAALDGQSLDGRALRV 292
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+D + + R+RG FVTM S DE A+
Sbjct: 220 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAA 279
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR L+VN A+ + + F
Sbjct: 280 LDGQSLDGRALRVNVAEERPRRGF 303
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +++RG FVTM + +EA A+
Sbjct: 116 EAKVYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 175
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
Y+ GR L VN A + P + ++F +++ NL ++ L + F SE
Sbjct: 176 EMFHRYDVGGRLLTVNKAAPRGARVERPARDFGGSSFRIYVGNLPWQVDDSRLVQLF-SE 234
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV-----APSR 273
VV A V++ RS G+GFV+ S++ + AI+A G+ GR LRV P R
Sbjct: 235 HGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPR 294
Query: 274 QF 275
+F
Sbjct: 295 RF 296
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
+L N+P+ E + LFEQ G V++I +++++ ++RG FVTM + +EA A+
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAG-VVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISE 218
Y+ GR L VN A + + P P P+ F ++ +++ N+ + L + F SE
Sbjct: 196 MYNRYDVNGRLLTVNKAARRGERPERP--PRTFEQSYRIYVGNIPWGIDDARLEQLF-SE 252
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278
VVSA V++ RS G+GFV+ S+ AI+ G+ GR +RV + +R
Sbjct: 253 HGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
Query: 279 QT 280
T
Sbjct: 313 NT 314
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + + R+RG FVTM S E + A+ N
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 161 LESYEFEGRTLKVNYAKIK-KKNPF 184
L+ +GRT++VN A+ + ++N F
Sbjct: 291 LDGQSLDGRTIRVNVAEDRSRRNTF 315
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ E + LF++ G V E+ + + +++RG F+TM + +EA A+
Sbjct: 132 EAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAV 191
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P P P+ F +F +++ NL ++ L + F S
Sbjct: 192 EMFNRYDLNGRFLTVNKAAPRGSRPERP--PQAFEPSFRIYVGNLPWQVDDARLEQVF-S 248
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ + +RS G+GFV+ S+ AI+A G+ GR +RV
Sbjct: 249 EHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRV 300
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG V+D + R+RG FVTM S E A+
Sbjct: 228 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 287
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A+ + +
Sbjct: 288 LDGQSLDGRAIRVNVAEERPR 308
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 32/198 (16%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+P++ + LFE+ G V +E+ ++ K R+RG FVTM S + AA
Sbjct: 100 KIFVGNLPFSVDSAALAELFERAGDVEMVEV-IYDKLTGRSRGFGFVTMSSKEAVEAACQ 158
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA----------------TFNLFIANLS 203
YE +GR L+VN P PP + F + +++ NL+
Sbjct: 159 QFNGYEIDGRALRVN------SGPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLA 212
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
+ + L F SE VV A+V++ + RS G+GFV++ S K AI + G
Sbjct: 213 WSVDQQQLETLF-SEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLG 271
Query: 264 GRPLRVAPS------RQF 275
GR +RV+P+ RQF
Sbjct: 272 GRAIRVSPAEARPPRRQF 289
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S R+ N+ W+ + + LF + G V+D ++ R+RG FVT S E A
Sbjct: 202 SSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 261
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
+ +L+ + GR ++V+ A+ +
Sbjct: 262 IESLDGVDLGGRAIRVSPAEAR 283
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 18/191 (9%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+P++ + LFEQ G+V +E+ R+RG FVTM S +EA AA+
Sbjct: 79 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 138
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
Y F+GR L+VN ++ P P+ +++ NL++
Sbjct: 139 FNGYTFQGRPLRVNCGPPPPRDESAPRAPRGGGGGGGGGSFVDSANKVYVGNLAWGVDNS 198
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L F SE V+ A+VI+ RS G+GFV++ + AIS G GR +RV
Sbjct: 199 TLENLF-SEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISNLDGIDLDGRQIRV 257
Query: 270 A-----PSRQF 275
P RQF
Sbjct: 258 TVAESKPRRQF 268
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAA 157
+ T+L N+P+ + + +++ + +E L + R+RG AFVTM + +
Sbjct: 114 TTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELV 173
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ NL+ + GRT+KVN+A P P P LF+ NLS+ ++ L E F
Sbjct: 174 IKNLDGSLYGGRTMKVNFAD----RPKPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGR 229
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G VV A V++ RS GYGFV + +++ + A+S+ G GR +RV
Sbjct: 230 CG-TVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGMEMEGREMRV 280
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + GTV+ + + R+RG FV + +E AL++
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A KK
Sbjct: 268 LNGMEMEGREMRVNLALGKK 287
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+P+ + + +++ + +E L R+RG AFVTM + + + NL+
Sbjct: 130 NLPYNCDSAQLAGIVQEYASPEMVEVLYDRITGRSRGFAFVTMTTVQDCELVIKNLDGSL 189
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ GRT+KVN+A P P + P LF+ NLS+ ++ L E F G +VV A
Sbjct: 190 YGGRTMKVNFAD----RPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEAFGRCG-NVVGA 244
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V++ RS GYGFV + +K+ + AIS+ G GR +RV
Sbjct: 245 RVLYDGETGRSRGYGFVCYSTKEEMDEAISSLNGTELEGREIRV 288
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + G V+ + + R+RG FV + +E A+++
Sbjct: 216 KLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISS 275
Query: 161 LESYEFEGRTLKVNYA 176
L E EGR ++VN A
Sbjct: 276 LNGTELEGREIRVNLA 291
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAA 157
+ T+L N+P+ + + +++ + +E L + R+RG AFVTM + +
Sbjct: 114 TTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELV 173
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+ NL+ + GRT+KVN+A P P P LF+ NLS+ ++ L E F
Sbjct: 174 IKNLDGSLYGGRTMKVNFAD----RPKPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGR 229
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G VV A V++ RS GYGFV + +++ + A+S+ G GR +RV
Sbjct: 230 CG-TVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGMEMEGREMRV 280
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F + GTV+ + + R+RG FV + +E AL++
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A KK
Sbjct: 268 LNGMEMEGREMRVNLALGKK 287
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ + + LFEQ GTV E+ + + + +RG FV+M + +EA A+
Sbjct: 142 KIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEM 201
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEG 219
++ +GR L VN A + P P P+ F + +++ NL ++ L + F SE
Sbjct: 202 FHRHDLDGRLLTVNKAAPRGSRPERP--PRVFEPGYRIYVGNLPWDVDNARLEQIF-SEH 258
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
VV A V++ + RS G+GFV+ ++ AI+A G+ GR +RV + Q R
Sbjct: 259 GKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQRPR 316
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG V+D + R+RG FVTM + E A+
Sbjct: 236 RIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAA 295
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 296 LDGRSLDGRAIRVNVAEQRPRRNF 319
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 10/166 (6%)
Query: 113 THEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T + +F + G+V+ +E+ +R+RG AFVTMGS EA A+ + + GRT+
Sbjct: 2 TSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTV 61
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDLREFFISEGWDVV 223
KVN+ ++ + + PK +++ F+ NLS+ ++ LR+ F ++ ++
Sbjct: 62 KVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAF-ADHPGLL 120
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
A+VI+ RS G+GF+SF S + AE+A++A GRPLR+
Sbjct: 121 GAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLRL 166
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
++ A N+ W T E +R F H +L ++ + R+RG F++ S + A +ALN
Sbjct: 94 KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNA 153
Query: 161 LESYEFEGRTLKVNYAKIK 179
+ E EGR L++N A ++
Sbjct: 154 MNEVEVEGRPLRLNLAAVR 172
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 89 VNTEQREEEY----SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGL 143
V E+ EY + ++ N+P+ E + LFEQ G V E+ + + +++RG
Sbjct: 100 VAAEEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGF 159
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANL 202
FVTM + +EA A+ Y+ GR L VN A + + PP ++F +++ NL
Sbjct: 160 GFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSG--SSFRIYVGNL 217
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
++ L E F SE VV A+V++ + RS G+GFV+ S++ + AI+A G+
Sbjct: 218 PWQVDDSRLVELF-SEHGKVVDAKVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL 276
Query: 263 MGRPLRV-----APSRQF 275
GR LRV P R+F
Sbjct: 277 EGRALRVNVAEERPPRRF 294
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 124 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 183
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 184 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 240
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ AISA G+ GR +RV
Sbjct: 241 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 292
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 220 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 279
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 280 LDGQNLEGRAIRVNVAE 296
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 134 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 193
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 194 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 250
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ AISA G+ GR +RV
Sbjct: 251 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 302
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 230 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 289
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 290 LDGQNLEGRAIRVNVAE 306
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 209 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ AISA G+ GR +RV
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 135 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 194
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 195 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 251
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ AISA G+ GR +RV
Sbjct: 252 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 303
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 231 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 290
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 291 LDGQNLEGRAIRVNVAE 307
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 209 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ AISA G+ GR +RV
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 14/198 (7%)
Query: 89 VNTEQREEEY----SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGL 143
V E+ EY + ++ N+P+ E + LFEQ G V E+ + + +++RG
Sbjct: 100 VAAEEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGF 159
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANL 202
FVTM + +EA A+ Y+ GR L VN A + + PP ++F +++ NL
Sbjct: 160 GFVTMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSG--SSFRIYVGNL 217
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
++ L E F SE VV A V++ + RS G+GFV+ S++ + AI+A G+
Sbjct: 218 PWQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL 276
Query: 263 MGRPLRV-----APSRQF 275
GR LRV P R+F
Sbjct: 277 EGRALRVNVAEERPPRRF 294
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 93 QREEEY--SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMG 149
+ EEE +T+L N+P + + LF++ GTV +E+ + + +RG AFVTM
Sbjct: 84 KNEEELPPRRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMS 143
Query: 150 SPDEATAALNNLESYEFEGRTLKVNY-AKI--KKKNPFPPVQPKPFATFNLFIANLSFEA 206
+ EA +A+ L+ + GR + VN+ AK+ KKK P + LF+ NL++
Sbjct: 144 TVKEAKSAIEKLQGSDLGGRDMIVNFPAKVLSKKKETDDSYIETP---YQLFVGNLAWSV 200
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266
+ + L+ F G +V +A+VI+ +GFV S+ E AI + GK F GR
Sbjct: 201 KKEILKSLFSQHG-NVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRN 259
Query: 267 LRVAPSR 273
L+V +R
Sbjct: 260 LKVRQAR 266
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNN 160
+L N+ W+ E +++LF QHG V ++ K R FV + S E A+ +
Sbjct: 190 QLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVS 249
Query: 161 LESYEFEGRTLKVNYAKIKKKN------------PFPPVQPKPFAT---------FNLFI 199
L EF GR LKV A+ K+ P V+ T + +++
Sbjct: 250 LHGKEFHGRNLKVRQARPTSKDMVVSDVEENIAKPSTMVEDSMTETVKATFVGSAYGVYV 309
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+NLS + K L E F G +V+ A V++ RS YGFV+F S+ E AI+A
Sbjct: 310 SNLSLSVKNKALSELFSQHG-NVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDK 368
Query: 260 KLFMGRPLRVAPSRQFARL 278
K F R L V ++ ++L
Sbjct: 369 KEFYERKLVVKEAKVKSQL 387
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 94/173 (54%), Gaps = 3/173 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ + + LFEQ GTV E+ + + +++RG FVTM + +EA +A+
Sbjct: 108 EAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAV 167
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-ATFNLFIANLSFEARAKDLREFFIS 217
Y+ +GR L VN A + P P + F ++ ++++ NL ++ L++ F
Sbjct: 168 EKFNRYDIDGRLLTVNKASPRGTRPERPPPRRSFESSLSIYVGNLPWDVDNTRLKQIFSK 227
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G +VV+A V++ RS G+GFV+ + A++A G+ GR ++V+
Sbjct: 228 HG-NVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGRAIKVS 279
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S + N+PW + ++ +F +HG V++ + + R+RG FVTM E A
Sbjct: 203 SSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDA 262
Query: 158 LNNLESYEFEGRTLKVNYAKIKKK 181
+ L+ +GR +KV+ A+ + +
Sbjct: 263 VAALDGESLDGRAIKVSVAEDRPR 286
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 114/262 (43%), Gaps = 54/262 (20%)
Query: 54 HAYTFPITPKKVSP---FVFHFSATTQ-----DPFVDSSSAAAVNTEQREEEYSKTRLVA 105
+ +F I K SP FV + + T++ D F D ++ Q++ + +L
Sbjct: 42 DSVSFSIAAKWNSPASRFVRNVAITSEFEVEEDGFADDAAP------QQQSFSADLKLFV 95
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLES 163
N+P+ + LFE G V +E+ ++ K R+RG FVTM S E AA N
Sbjct: 96 GNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKVTGRSRGFGFVTMSSVSEVEAAANQFNG 154
Query: 164 YEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF------------------------NLFI 199
YE +GR L+VN P PP + F+ +++
Sbjct: 155 YELDGRPLRVNAG------PPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYV 208
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLS+ L F +G VV A VI+ + RS G+GFV++ S + + AI++ G
Sbjct: 209 GNLSWGVDDMALESLFAEQG-KVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINSLNG 267
Query: 260 KLFMGRPLRVA------PSRQF 275
GR +RV+ P RQF
Sbjct: 268 ADLDGRQIRVSEAEARPPRRQF 289
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 18/179 (10%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ E + LFE GTV E+ + + +++RG FVTM + +EA A
Sbjct: 110 KLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAK 169
Query: 161 LESYEFEGRTLKVNYAKIKKKN---------PFPPVQPKPFATFNLFIANLSFEARAKDL 211
Y++ GR L VN A + F PV +++ NLS+E L
Sbjct: 170 FNRYDYNGRPLTVNKAAPRGSRPEREERPPRTFEPV-------LRVYVGNLSWELDDSRL 222
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ F SE VVSA V++ RS G+GFV+ +K AI+A G++ GR ++V+
Sbjct: 223 EQVF-SEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAALDGQILEGRTIKVS 280
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + +F +HG V+ + + R+RG FVTM E A+
Sbjct: 207 RVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAA 266
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGRT+KV+ A+
Sbjct: 267 LDGQILEGRTIKVSVAE 283
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 9/192 (4%)
Query: 84 SSAAAVNTEQREEEYSK----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N 138
S + E+ E+ +S+ +L N+P+ E + +F+ G V E+ + + +
Sbjct: 107 SGVGNEDEEESEQGFSEPPEEAKLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETD 166
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNL 197
R+RG FVTM + +EA A+ L ++ GR L VN A + P P P+ F + +
Sbjct: 167 RSRGFGFVTMSTVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPERP--PREFEPSCRV 224
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL ++ L + F SE V+SA V+ RS G+GFVS S+ AI+A
Sbjct: 225 YVGNLPWDVDNARLEQVF-SEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAAL 283
Query: 258 QGKLFMGRPLRV 269
G+ GR +RV
Sbjct: 284 DGQTLDGRAIRV 295
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG VL + S R+RG FV+M S E A+
Sbjct: 223 RVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAA 282
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 283 LDGQTLDGRAIRVNVAEERPRRAF 306
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 14/190 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
V + REE +L N+P++ T ++ +FE+ G V E + +R+RG FVT
Sbjct: 108 VAIKAREE----GKLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVT 163
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI-------- 199
M S +EA A+ + GRTL+VN+ ++ + ++P+ + + FI
Sbjct: 164 MESVEEAKEAIRMFNGSQVGGRTLRVNFPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYA 223
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + ++ L + F ++ ++SA+VI+ + RS G+GFVSF S + AE A+ A G
Sbjct: 224 GNLGWRLTSEGLGDAFANQ-PGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNG 282
Query: 260 KLFMGRPLRV 269
+ GRPLR+
Sbjct: 283 EEVDGRPLRL 292
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPD 152
++ + S T+L N+P++ + L + G+ IE L ++RG AFVTM +
Sbjct: 110 QDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIE 169
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ A + NL+ EF GRTL+VN++ K P P+ P+ LF+ NLS+ + L
Sbjct: 170 DCNAVIENLDGKEFLGRTLRVNFS--SKPKPKEPLYPE--TEHKLFVGNLSWSVTNEILT 225
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ F G VV A V++ RS GYGFV + +K E A++A GR +RV+
Sbjct: 226 QAFQEYG-TVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVS 282
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T+E + F+++GTV+ + + R+RG FV + E AAL
Sbjct: 209 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAA 268
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ K+
Sbjct: 269 LNDVELEGRAMRVSLAQGKR 288
>gi|125591465|gb|EAZ31815.1| hypothetical protein OsJ_15973 [Oryza sativa Japonica Group]
Length = 234
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
AFVTM + +EA AA+ L S + GRT++V ++K +K PP L+++NL
Sbjct: 66 AFVTMATAEEAAAAVEKLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILERHKLYVSNLP 125
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
++ARA +++EFF ++ +SA+V+F +SAGYGFVSF +K+ AE A++ GK M
Sbjct: 126 WKARAPNMKEFF--SKFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELM 183
Query: 264 GRPLRVAPSRQFARLQTKEGLHSDETSDDLNINAEEADTAD 304
GRP+R+ + + + + +D +D N++ E D
Sbjct: 184 GRPVRLRWRQSVD--DSDDSVKADGEIEDANVDGEAEGVTD 222
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + H +E L + R+RG AFVTM + ++ +
Sbjct: 250 TKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIK 309
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ + GRT++VN A + P P+ P+ LF+ NLS+ + L + F G
Sbjct: 310 NLDGTLYSGRTMRVNMAD--RPKPKAPLYPE--TEHKLFVGNLSWTVTPEMLTDAFQRCG 365
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+VV A V++ RS GYGFV + +K+ + AI G GR +RV
Sbjct: 366 -NVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRV 414
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F++ G V+ + + R+RG FV + +E A+
Sbjct: 342 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 401
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A K+
Sbjct: 402 LNGTEIEGREIRVNLALGKR 421
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
+E T L +N+ T + +F G ++ + ++RG FV SP++A
Sbjct: 194 DELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAK 253
Query: 156 AALNNLESYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFE 205
A++ L Y+ E RTL V A+ K K+ F K F NL++ NL+
Sbjct: 254 KAVDALNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEK-FKASNLYVKNLALC 312
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
L+E F G +VSA+V+ +DN S G+GFV F S + A+ A++A G +F G+
Sbjct: 313 IDNDKLQELFSCSG-KIVSAKVMRYDNG-ASRGFGFVCFSSPEEAKKALNALNGAVFQGK 370
Query: 266 PLRVAPS-----RQFARLQT 280
L VA + RQ A LQT
Sbjct: 371 SLYVAMAQCKRDRQLA-LQT 389
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 113 THEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T ++R +F G + ++ L S R+ +V P +A AL+NL +G+ +
Sbjct: 31 TEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSNLNHTYLKGKLM 90
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
++ + + +NP + NL++ NL + L+ F S+ ++S +V+ +
Sbjct: 91 RIMWCQ---RNPCA----RKSGIGNLYVKNLDASIDSAGLQSLF-SKFGTILSCKVV--E 140
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S GYGFV F S+ A A +A + + L V+
Sbjct: 141 EHGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVS 179
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T+L N+P+ + + + H +E L + R+RG AFVTM + ++ +
Sbjct: 134 TKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIK 193
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
NL+ + GRT++VN A + P P+ P+ LF+ NLS+ + L + F G
Sbjct: 194 NLDGTLYSGRTMRVNMAD--RPKPKAPLYPE--TEHKLFVGNLSWTVTPEMLTDAFQRCG 249
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+VV A V++ RS GYGFV + +K+ + AI G GR +RV
Sbjct: 250 -NVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRV 298
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ WT T E + F++ G V+ + + R+RG FV + +E A+
Sbjct: 226 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 285
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++VN A K+
Sbjct: 286 LNGTEIEGREIRVNLALGKR 305
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 47 PLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQ 106
P +++ H +F P +++ + A + P V A+ + + EE + +L
Sbjct: 16 PPAAALHHRSSFCRCPSRLTVGAARWWARRRQPAVVVRVVASSSVLEAPEEVAARKLYVG 75
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESY 164
N+P T T++++ A+F HGTV E+ M K R+R FVTM +P+EA AA+ +L
Sbjct: 76 NIPRTVTNDELAAMFADHGTVERAEV-MFDKYTGRSRRFGFVTMSTPEEANAAIESLNET 134
Query: 165 EFEGRTLKVNYAK-----IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
E GR +KVN + I + P +P+P +F+ + ++ + G
Sbjct: 135 EVGGRKIKVNVTESFLPNIDRSAP----EPEP-----VFVDS-----------QYRFTLG 174
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+V+SA V +S GYGFV+F S++ E A+S F G+P+RV
Sbjct: 175 -EVLSATVSRIPGTAKSKGYGFVTFSSEEEVEAAVSTFNNAELEGQPIRV 223
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 5/190 (2%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRN 140
D S A + E + +L N+ + + + LFEQ GTV E+ + + +++
Sbjct: 112 DVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 171
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFI 199
RG FVTM S DEA A+ Y+ GR L VN K + P P+ + F +++
Sbjct: 172 RGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYV 229
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL ++ L + F SE VV A V++ RS G+GFV+ AISA G
Sbjct: 230 GNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 288
Query: 260 KLFMGRPLRV 269
+ GR +RV
Sbjct: 289 QNLEGRAIRV 298
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 226 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 285
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 286 LDGQNLEGRAIRVNVAE 302
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 4/174 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ E + +LFEQ GTV E+ + + +R+RG FVTM + +E A+
Sbjct: 123 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 182
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
YE GR L VN K K P P+P +F +++ NL ++ L + F SE
Sbjct: 183 FSGYELNGRVLTVN--KAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIF-SEHG 239
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
V A V++ RS G+GFV+ S+ AI+A G+ GR +RV + Q
Sbjct: 240 KVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAAQ 293
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG V D + + R+RG FVTM S + A+
Sbjct: 216 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 275
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A + K
Sbjct: 276 LDGQSLDGRAIRVNVAAQRPK 296
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 33/187 (17%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P T ++++ + E+HG V E+ M+ K R+R AFVTM + ++A A +
Sbjct: 81 RLYIGNIPRTVDNDELTKIVEEHGAVEKAEV-MYDKYSGRSRRFAFVTMRTVEDANAVIE 139
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL-----------------FIANL 202
L + GR +KVN + KP A+ +L ++ NL
Sbjct: 140 KLNGTQIGGREIKVN------------ITEKPLASGDLSFLQLEESQFVDSPHKVYVGNL 187
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
+ ++ L+ FF SE V+SA+V +S+GYGFVSF ++ E AIS+F L
Sbjct: 188 AKTVTSEILKNFF-SEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISSFNNSLL 246
Query: 263 MGRPLRV 269
G+ +RV
Sbjct: 247 EGQKIRV 253
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + LFEQ G V E+ + + +++RG FVTM + +EA A+
Sbjct: 114 EAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAV 173
Query: 159 NNLESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + + PP ++F +++ NL ++ L E F S
Sbjct: 174 EMFHRYDVNGRLLTVNKAAPRGARVERPPRDSG--SSFRIYVGNLPWQVDDSRLVELF-S 230
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV-----APS 272
E VV A V++ + RS G+GFV+ S+ + AI+A G+ GR LRV P
Sbjct: 231 EHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDGQSLEGRALRVNVAEERPP 290
Query: 273 RQF 275
R+F
Sbjct: 291 RRF 293
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 4/174 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ E + +LFEQ GTV E+ + + +R+RG FVTM + +E A+
Sbjct: 125 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 184
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
YE GR L VN K K P P+P +F +++ NL ++ L + F SE
Sbjct: 185 FSGYELNGRVLTVN--KAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIF-SEHG 241
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
V A V++ RS G+GFV+ S+ AI+A G+ GR +RV + Q
Sbjct: 242 KVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAAQ 295
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + +F +HG V D + + R+RG FVTM S + A+
Sbjct: 218 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 277
Query: 161 LESYEFEGRTLKVNYAKIKKK 181
L+ +GR ++VN A + K
Sbjct: 278 LDGQSLDGRAIRVNVAAQRPK 298
>gi|407039916|gb|EKE39893.1| enhancer binding protein-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 13/195 (6%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN----RNRGLAFVTM 148
+R E + L +N+P+ T E ++ +F + V + H K +N G+AF+T+
Sbjct: 105 KRTNEVTDNMLFIKNLPFAITEEKLKEMFSKFEVVEITLIKTHRKKGNVTKNNGIAFITV 164
Query: 149 GSPDEATAALNNLESYEFEGRTLKV--NYAKIKKKNPFPPV-QPKPFATFNLFIANLSFE 205
+ +E A+ + ++E EGR + V Y K + K +PK + N+F+ NL F
Sbjct: 165 KTAEEQKKAIAEMNNFEVEGRKITVAAAYKKAENKQTTKKTNEPKSLSETNVFVKNLPFT 224
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR----RSAGYGFVSFKSKKVAETAISAFQGKL 261
+ ++ F E +DVV A ++ N + RS GYGFV+FK+ + + AI+
Sbjct: 225 LNDEGFKKLF--EKYDVVEATIVKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIAEMDNFE 282
Query: 262 FMGRPLRVAPSRQFA 276
GR + V + Q A
Sbjct: 283 VEGRKITVTSAYQRA 297
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 25/192 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+P+T + LFE G V +E+ + R+RG FVTM + E AA
Sbjct: 94 KLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQ 153
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----------FATFN-LFIANLSFEARAK 209
YE +GR L+VNY P PP + F N + ++NL++
Sbjct: 154 FNGYELDGRLLRVNYG------PPPPKRDDSSFRGSRNASRFDNRNRVHVSNLAWGVDDL 207
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L F +G +V+ A+V++ + +S G+GFV++ S + AI + G GRP+RV
Sbjct: 208 TLENLFREKG-NVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRV 266
Query: 270 A------PSRQF 275
P RQF
Sbjct: 267 TQAEARPPRRQF 278
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 108/241 (44%), Gaps = 52/241 (21%)
Query: 52 PFH---AYTF-PITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQN 107
PFH + TF I PK+ P SA T + V +S AA RL N
Sbjct: 33 PFHFLNSVTFKAIKPKR--PIAV--SAVTAEAPVATSDVAA------------RRLYVGN 76
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYE 165
+P T ++ + E+HG V E+ M+ K R+R AFVTM + ++A AA+ L E
Sbjct: 77 IPRTLDSAELARIVEEHGAVEKAEV-MYDKYSGRSRRFAFVTMKTVEDANAAIEKLNGTE 135
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL-----------------FIANLSFEARA 208
GR +KVN + KP T ++ ++ NL+
Sbjct: 136 IGGREIKVN------------ITEKPLLTLDMSLLQAEESQFIDSPHKVYVGNLARTVTT 183
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
L +FF +G V+SA+V +S+G+GFVSF S++ E AIS+ G+ +R
Sbjct: 184 DTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSCNNAFLDGQRIR 243
Query: 269 V 269
V
Sbjct: 244 V 244
>gi|255548039|ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 281
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 13/177 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L N+P + ++ LF+ +GTV+ +E+S + + +RG FVTMGS + A A+ L
Sbjct: 100 LYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAAL 159
Query: 162 ESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPF------ATFNLFIANLSFEARAKDLR 212
+ + GR ++V ++ ++NP P+ P + F +++ NL++ + ++LR
Sbjct: 160 DGSDIGGREMRVKFSVDMNSGRRNP-EPLSSAPTKNLFYESPFKVYVGNLAWTVKPEELR 218
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ F G VVSA V++ ++ YGF+SF S K + A+S F GK F GR L V
Sbjct: 219 DQFSKFG-TVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALS-FNGKDFRGRILVV 273
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 188 QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247
QP+P L++ NL +L E F G V+S EV + S G GFV+ S
Sbjct: 94 QPRPC---ELYVCNLPRSCDIAELVELFKPYG-TVISVEVSRNPETGISRGCGFVTMGSI 149
Query: 248 KVAETAISAFQGKLFMGRPLRV 269
A+ AI+A G GR +RV
Sbjct: 150 NSAKNAIAALDGSDIGGREMRV 171
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+P++ + LFE G V +E+ + R+RG FVTM S +EA AA
Sbjct: 90 KLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQ 149
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPP----------VQPKPFATFN-LFIANLSFEARAK 209
YE +GR+L+VN +N P P + N + + NL++
Sbjct: 150 FNGYELDGRSLRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVGNLAWGVDDV 209
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L F +G V+ A VI+ RS G+GFV+F S ++AI + G GR +RV
Sbjct: 210 ALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDLNGRAIRV 269
Query: 270 A 270
+
Sbjct: 270 S 270
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSM-HSKNRNRGLAFVTMGSPDEATA 156
S+ R+ N+ W + +LF + G VL+ + R+RG FVT GSPDE +
Sbjct: 193 SENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKS 252
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKK 181
A+ +L+ + GR ++V+ A K K
Sbjct: 253 AIQSLDGVDLNGRAIRVSLADSKPK 277
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 9/174 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ E + +F+ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 54 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 113
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
L Y+ +GR L VN A + ++ P +P + +++ NL ++ L + F
Sbjct: 114 ELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEP----SCRVYVGNLPWDVDTSRLEQLF 169
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
SE VVSA V+ RS G+GFV+ S+ AI+A G+ GR +RV
Sbjct: 170 -SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + S R+RG FVTM S E A+
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 210 LDGQTLDGRAVRVNVAEERPRRAF 233
>gi|167376639|ref|XP_001734079.1| plastid-specific 30S ribosomal protein 2, chloroplast precursor
[Entamoeba dispar SAW760]
gi|165904561|gb|EDR29774.1| plastid-specific 30S ribosomal protein 2, chloroplast precursor,
putative [Entamoeba dispar SAW760]
Length = 193
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN----RGLAFVTMGSPDEATAAL 158
L +N+P++ T E ++ +F + V + H K +N +G FVT+ + +E A+
Sbjct: 2 LFIKNLPFSITEEKLKEIFSKFEVVEATIVKTHKKKQNVNLSKGFGFVTVKTSEEQKKAI 61
Query: 159 NNLESYEFEGRTLKVN--YAKIKKKNPFPPV-QPKPFATFNLFIANLSFEARAKDLREFF 215
+ ++E EGR + V Y +I+KK +PK + N+F+ NL F+ + ++ F
Sbjct: 62 AEMNNFEIEGRKIIVAAAYKRIEKKQVAKKTNEPKQLSETNIFVKNLPFDLTDESFKKLF 121
Query: 216 ISEGWDVVSAEVIFHD----NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
E ++V A ++ N RS GYGFV FK+ + + AI GR + VAP
Sbjct: 122 --EKYEVNEATIVKRHSKKLNTDRSKGYGFVVFKTTEGQKKAIEEMNNFEIEGRKITVAP 179
Query: 272 SRQFARLQTKE 282
+ Q R++ KE
Sbjct: 180 AYQ--RVEKKE 188
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPD 152
+ S+T + +N+P+ T E + LFE++ + HSK +R++G FV + +
Sbjct: 97 QLSETNIFVKNLPFDLTDESFKKLFEKYEVNEATIVKRHSKKLNTDRSKGYGFVVFKTTE 156
Query: 153 EATAALNNLESYEFEGRTLKV--NYAKIKKK 181
A+ + ++E EGR + V Y +++KK
Sbjct: 157 GQKKAIEEMNNFEIEGRKITVAPAYQRVEKK 187
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 97/201 (48%), Gaps = 18/201 (8%)
Query: 92 EQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMG 149
E EE+S+ +L N+P++ + LFEQ G+V +E+ R+RG FVTM
Sbjct: 69 EDGSEEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMS 128
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF----------ATFNLFI 199
S +EA AA+ Y F+GR L+VN ++ P P+ + +++
Sbjct: 129 SAEEAEAAVEQFNGYAFQGRQLRVNCGPPPPRDESTPRAPRGGGGGGGGGFVDSANKVYV 188
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL++ L F SE V+ A+VI+ + RS G+GFV++ S + AIS G
Sbjct: 189 GNLAWGVDNSTLENLF-SEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAISNLDG 247
Query: 260 KLFMGRPLRVA-----PSRQF 275
GR +RV P RQF
Sbjct: 248 IDLDGRQIRVTAAESKPRRQF 268
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P T T+E + L E+HG V +++ M+ K R+R F TM S ++A A +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQV-MYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 160 NLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLRE 213
L EGR +KVN + I +Q + A + +++ NL+ + K++ E
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA-KTVTKEMLE 194
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
SE VVSA+V +S G+GFV+F S++ E AI A L G+ +RV
Sbjct: 195 NLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-M 134
T+ P S + + +E S ++ N+ T T E + LF + G V+ ++S +
Sbjct: 152 TEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRV 211
Query: 135 HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
+++ G FVT S ++ AA+ L + EG+ ++VN A
Sbjct: 212 PGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 9/174 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ E + +F+ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 47 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 106
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
L Y+ +GR L VN A + ++ P +P + +++ NL ++ L + F
Sbjct: 107 ELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEP----SCRVYVGNLPWDVDTSRLEQLF 162
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
SE VVSA V+ RS G+GFV+ S+ AI+A G+ GR +RV
Sbjct: 163 -SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 215
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + S R+RG FVTM S E A+
Sbjct: 143 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 202
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 203 LDGQTLDGRAVRVNVAEERPRRAF 226
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+P+++ + LFE+ G V +E+ ++ K R+RG FVTM S +E AA
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEV-IYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 NLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFATF----NLFIANLSFEARAKDLRE 213
YE +GR L+VN K++N + +F +++ NL++ +D E
Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAW-GVDQDALE 205
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
SE VV A+V++ + RS G+GFV++ S + AI + G GR +RV+P+
Sbjct: 206 TLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A+ +
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 161 LESYEFEGRTLKVNYAKIK 179
L+ + GR ++V+ A+ +
Sbjct: 249 LDGVDLNGRAIRVSPAEAR 267
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 23/182 (12%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P ++++R + E+HG + +I M+ K R+R FVTM + ++A A +
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAI-EIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIE 143
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT------------FNLFIANLSFEAR 207
L E GR +KVN + P++ AT + ++I NL+
Sbjct: 144 KLNDTEIGGRKIKVNITE-------KPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVT 196
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
+ L++FF SE V+ A+V +S G+GFVSF S++ E AI A + G+ +
Sbjct: 197 NELLKDFF-SEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKI 255
Query: 268 RV 269
RV
Sbjct: 256 RV 257
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 120 LFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LFEQ GTV E+ + + +++RG FVTM S DEA A+ Y+ GR L VN K
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN--KA 59
Query: 179 KKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA 237
+ P P+ + F +++ NL ++ L + F SE VV A V++ RS
Sbjct: 60 APRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSR 118
Query: 238 GYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G+GFV+ AISA G+ GR +RV
Sbjct: 119 GFGFVTMSDVDELNEAISALDGQNLEGRAIRV 150
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 78 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 137
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 138 LDGQNLEGRAIRVNVAE 154
>gi|401838326|gb|EJT42016.1| PUB1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 459
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 66 SPFVFHFSATTQDPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQ 106
+P V SA DP + + + VN+ Q E+ E S L
Sbjct: 22 APLVAEASAPV-DPSAEQNVSGEVNSTQVEDDQGESDPSVVPANAITGGRETSDRVLYVG 80
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ T + ++ F+ G + +I++ + N+N AFV +A AL L +
Sbjct: 81 NLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI 140
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
E +K+N+A F Q TFNLF+ +L+ + LR F + +S
Sbjct: 141 ENNIVKINWA-------FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGH 192
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V++ S GYGFVSF S+ A+TA+ QG+ GRPLR+
Sbjct: 193 VMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQGQDLNGRPLRI 235
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 112/258 (43%), Gaps = 36/258 (13%)
Query: 45 FFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVN----TEQREEEYSK 100
F L SS F + P K+ SA + P + A AV+ TE EE
Sbjct: 14 FLSLPSSSFKPVPSALFPSKIPQHRALASAGWRHPLAPLAVAVAVSSDVETEVAEEFSED 73
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAAL 158
R+ N+P++ + LFEQ G+V +E+ ++ K R+RG FVTM + +E A+
Sbjct: 74 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGRSRGFGFVTMSTVEEVEEAV 132
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPP---VQPKPF-----------------ATFNLF 198
L Y +GR LKVN P PP P+ F ++
Sbjct: 133 ERLNGYVLDGRALKVN------SGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVY 186
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NLS+ L F +G V+ A VI+ RS G+GFV++ + + A+S
Sbjct: 187 VGNLSWNVDDSALANLFNEQG-SVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLD 245
Query: 259 GKLFMGRPLR--VAPSRQ 274
G GR +R VA +RQ
Sbjct: 246 GTDMDGRQIRVTVAEARQ 263
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q E +KT L+ +P T T E ++ LF Q G VL +L S + G FV GS
Sbjct: 16 QNPETKAKTNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYGSA 75
Query: 152 DEATAALNNLESYEFEGRTLKVNYAK---IKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
+EA A+ + E +TLKV+YA+ + KN N+++ANL +
Sbjct: 76 EEAEHAIQKMNGTTLESKTLKVSYARPSSVAIKNA------------NVYVANLPPQLSL 123
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG--RP 266
+L F G +++++V+ ++ G GFV F AE AI+A GK +G +P
Sbjct: 124 TELDALFQPYGT-IITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAALNGKQLVGGTQP 182
Query: 267 LRV 269
L V
Sbjct: 183 LLV 185
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 186 PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFK 245
P P+ A NL + L + L++ F S+ V+S ++I + S GYGFV++
Sbjct: 15 PQNPETKAKTNLIVNYLPQTLTEEGLKQLF-SQFGVVLSCKLIKDKSSGISLGYGFVNYG 73
Query: 246 SKKVAETAISAFQGKLFMGRPLRVAPSR 273
S + AE AI G + L+V+ +R
Sbjct: 74 SAEEAEHAIQKMNGTTLESKTLKVSYAR 101
>gi|357114300|ref|XP_003558938.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 255
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T +IR LFE+ G + ++LS + N GLAFVT S + A
Sbjct: 73 YECGKVVASGMPYTTTEAEIRELFERFGPIRSLQLSHFPDSGNFSGLAFVTFESDEVAMK 132
Query: 157 ALNNLESYEFEGRTLKVNYAKIK------KKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V +I KK+ F KP + ++ NLS+ KD
Sbjct: 133 SL-ELDGHKLGYRFMRVERCRITASSKRPKKSEFQTDPEKPDGCLSAYVGNLSWNVTEKD 191
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
LR+FF S + S S G+G + F+ + E A+ Q +L GRP+++A
Sbjct: 192 LRDFFKSS--RIASVRFAIDKRTGDSRGFGHIDFEDDESLEKAVGMNQSEL-RGRPVKIA 248
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ + LFE G V +E+ + R+RG FVTM S +EA AA
Sbjct: 87 KLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQ 146
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPP----------VQPKPFATFN-LFIANLSFEARAK 209
YE +GR L+VN +N P P + N + ++NL++
Sbjct: 147 FNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDNV 206
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L+ F +G +V+ A VI+ RS G+GFV+F S +AI + G GR +RV
Sbjct: 207 ALKSLFREQG-NVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRV 265
Query: 270 A 270
+
Sbjct: 266 S 266
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S+ R+ N+ W + +++LF + G VL+ + R+RG FVT SPDE +A
Sbjct: 190 SENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSA 249
Query: 158 LNNLESYEFEGRTLKVNYAKIKKK 181
+ +L + GR ++V+ A K K
Sbjct: 250 IQSLNGVDLNGRAIRVSLADSKPK 273
>gi|365983576|ref|XP_003668621.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
gi|343767388|emb|CCD23378.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
Length = 499
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 112 STHEDI-RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
S +ED+ + F+ G + D+++ + KN+N AFV +A AL L + E +
Sbjct: 97 SINEDLLKQYFQVGGQITDVKIMVDKKNQNVNYAFVEYLKSHDANVALQTLNGIQIENKI 156
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
+K+N+A ++N TFNLF+ +L+ + + L F + A V++
Sbjct: 157 IKINWAFQSQQN------LNSNDTFNLFVGDLNIDVDDETLSSNF-KNFPSYIQAHVMWD 209
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
RS GYGFVSF + A+ A+ QGK GRP+R+
Sbjct: 210 MQTSRSRGYGFVSFADRDQAQNAMDTMQGKEINGRPIRI 248
>gi|323335711|gb|EGA76992.1| Pub1p [Saccharomyces cerevisiae Vin13]
Length = 453
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSXAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
YGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
>gi|242078001|ref|XP_002443769.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
gi|241940119|gb|EES13264.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
Length = 308
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L N+P +D+ LF HGTVL +E+S ++ +RG AFVTM S EA A+N L
Sbjct: 125 LFVCNLPRRCDVQDLLQLFTPHGTVLSVEISRDAETGISRGTAFVTMRSLAEARTAINAL 184
Query: 162 ESYEFEGRTLKVNYAK---IKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
+ +E +GR + V A +KN P++ F + +++ NL++ + +DLRE
Sbjct: 185 DGFELDGREVFVKLASDVISNRKNVNLAHITPMKDHIFESPHKVYVGNLAWSVQPQDLRE 244
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G VVS ++ R+ YGF+SF S + E A+ +F GR + V
Sbjct: 245 LFTQCG-TVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAALK-LDRTVFFGRDIVV 298
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W+ +D+R LF Q GTV+ L K RNR F++ S +E AAL L+
Sbjct: 232 NLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAAL-KLDRTV 290
Query: 166 FEGRTLKVNYAKIKKK 181
F GR + V A ++++
Sbjct: 291 FFGRDIVVKEAIVERQ 306
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
R+ N+P T ++E + L E+HG V +++ M+ K R+R F TM S ++A A +
Sbjct: 77 RVYIGNIPRTVSNEQLTKLVEEHGAVEKVQV-MYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 160 NLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLRE 213
L EGR +KVN + I +Q + A + +++ NL+ + K++ E
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA-KTVTKEMLE 194
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
SE VVSA+V +S G+GFV+F S++ E A+ A L G+ +RV
Sbjct: 195 NLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAVVALNNSLLEGQKIRV 250
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-M 134
T+ P S + + +E S ++ N+ T T E + LF + G V+ ++S +
Sbjct: 152 TEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRV 211
Query: 135 HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
+++ G FVT S ++ AA+ L + EG+ ++VN A
Sbjct: 212 PGTSKSTGFGFVTFSSEEDVEAAVVALNNSLLEGQKIRVNKA 253
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 82 DSSSAAAVNTEQREEEYS----KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK 137
D + V E+ YS + ++ N+P+ D+ LF + G V E+ + +
Sbjct: 113 DEEESGEVGFADEEDSYSAPPEEVKIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRE 172
Query: 138 -NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TF 195
+++RG FV+M + +E A+ + Y+ GRTL VN A + P P+ F F
Sbjct: 173 TDQSRGFGFVSMSTVEEVVKAIEMFDRYDINGRTLTVNKAAPRGSRAERP--PRDFEPAF 230
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+++ N+ ++ L + F SE V A ++F RS G+GFV+ S+ E AI+
Sbjct: 231 RVYVGNIPWQVDNLRLEQLF-SEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAIA 289
Query: 256 AFQGKLFMGRPLRVAPSRQFAR 277
A G GR ++V+ +++ R
Sbjct: 290 ALDGSDLDGRAIKVSMAQERPR 311
>gi|365758602|gb|EHN00436.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 455
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 8/185 (4%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
S N E S L N+ T + ++ F+ G + +I++ + N+N A
Sbjct: 59 SVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYA 118
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
FV +A AL L + E +K+N+A F Q TFNLF+ +L+
Sbjct: 119 FVEYHQSHDANIALQTLNGKQIENNIVKINWA-------FQSQQSSSDDTFNLFVGDLNV 171
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+ LR F + +S V++ S GYGFVSF S+ A+TA+ QG+ G
Sbjct: 172 NVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQGQDLNG 230
Query: 265 RPLRV 269
RPLR+
Sbjct: 231 RPLRI 235
>gi|323303187|gb|EGA56986.1| Pub1p [Saccharomyces cerevisiae FostersB]
Length = 433
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 34 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 93
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 94 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 151
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 152 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 205
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
YGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 206 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 236
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 88/207 (42%), Gaps = 42/207 (20%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
+L N+P+ + LFEQ G V +E+ ++ K R+RG FVTM + +E AA
Sbjct: 91 KLFVGNLPFNVDSAGLAGLFEQAGNVEMVEV-IYDKITGRSRGFGFVTMSTVEEVEAAAQ 149
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQ----------------------PKPFATFN- 196
YE EGR L+VN PP + P+ A N
Sbjct: 150 QFNGYELEGRQLRVNSGP-------PPARRENSNFRGENSNFRGENTNFRGPRGGANLNS 202
Query: 197 ---LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
+++ NLS+ L F SE V A VI+ RS G+GFV++ S + A
Sbjct: 203 TNRIYVGNLSWGVDDLALETLF-SEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRA 261
Query: 254 ISAFQGKLFMGRPLRVA-----PSRQF 275
I + G GR +RV P RQF
Sbjct: 262 IESLDGVDLNGRSIRVTMAEARPRRQF 288
>gi|349580919|dbj|GAA26078.1| K7_Pub1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 453
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
YGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
>gi|6324312|ref|NP_014382.1| Pub1p [Saccharomyces cerevisiae S288c]
gi|308153665|sp|P32588.4|PUB1_YEAST RecName: Full=Nuclear and cytoplasmic polyadenylated RNA-binding
protein PUB1; AltName: Full=ARS consensus-binding
protein ACBP-60; AltName: Full=Poly uridylate-binding
protein; Short=Poly(U)-binding protein
gi|1301841|emb|CAA95877.1| PUB1 [Saccharomyces cerevisiae]
gi|285814634|tpg|DAA10528.1| TPA: Pub1p [Saccharomyces cerevisiae S288c]
gi|392296972|gb|EIW08073.1| Pub1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 453
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
YGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
>gi|295646|gb|AAC37348.1| RNA-binding protein [Saccharomyces cerevisiae]
gi|311124|gb|AAC37364.1| poly(A)-binding protein [Saccharomyces cerevisiae]
gi|151944515|gb|EDN62793.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|190409011|gb|EDV12276.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
gi|207341619|gb|EDZ69624.1| YNL016Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274171|gb|EEU09080.1| Pub1p [Saccharomyces cerevisiae JAY291]
gi|259148933|emb|CAY82177.1| Pub1p [Saccharomyces cerevisiae EC1118]
gi|323346726|gb|EGA81007.1| Pub1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352444|gb|EGA84945.1| Pub1p [Saccharomyces cerevisiae VL3]
Length = 453
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
YGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
>gi|172438|gb|AAA02808.1| RNA-binding protein [Saccharomyces cerevisiae]
Length = 429
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
YGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
>gi|365763380|gb|EHN04909.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 453
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
YGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV----QPKPFA 193
NR+RG AFVTM + +EA A+ + GRT +VNY ++ + V + +
Sbjct: 86 NRSRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDDG 145
Query: 194 TFNLFIANLSFEARAKDLREFFISEG-WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
T+ ++ NL + RA LR F EG ++ A VIF RS G+GFVSF + + A+
Sbjct: 146 TYKIYAGNLGWGVRADTLRNVF--EGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 203
Query: 253 AISAFQGKLFMGRPLRVAPSRQ 274
A+ + G GR LR++ + Q
Sbjct: 204 ALESLDGVELEGRSLRLSLAEQ 225
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V R + ++ A N+ W + +R +FE +LD + + R+RG FV+
Sbjct: 135 VTMSGRRRDDGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVS 194
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ ++A AAL +L+ E EGR+L+++ A ++NP PP P
Sbjct: 195 FSTAEDAQAALESLDGVELEGRSLRLSLA---EQNP-PPGSP 232
>gi|242042437|ref|XP_002468613.1| hypothetical protein SORBIDRAFT_01g048990 [Sorghum bicolor]
gi|241922467|gb|EER95611.1| hypothetical protein SORBIDRAFT_01g048990 [Sorghum bicolor]
Length = 253
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T DIR LFE +G + ++LS + N RGLAF+ + ++A
Sbjct: 71 YEFGKVVASGMPYTTTEADIRKLFEFYGPLQSVQLSRFPDSGNFRGLAFICFETNEDAIK 130
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+K F K + ++ NLS+ KD
Sbjct: 131 SL-ELDGFKIGSRYMRVERCRVTATSNKKRKAEFQTDPKKSEGCLSAYVGNLSWNVTEKD 189
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
LR+FF S + S S G+ V F+ + E A++ Q +L GRP++VA
Sbjct: 190 LRDFFRSS--KIASVRFAIDKRTGGSRGFCHVDFQDDESLEKAVAMNQSEL-QGRPVKVA 246
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 32/193 (16%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+ +++ + LFE+ G V +E+ ++ K R+RG FVTM S +E AA
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEV-IYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN--------------------LFI 199
YE +GR L+VN PP + + ++F +++
Sbjct: 147 QFNGYELDGRALRVNSG--------PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYV 198
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL++ +D E SE VV A+V++ + RS G+GFV++ S + AI + G
Sbjct: 199 GNLAWGV-DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257
Query: 260 KLFMGRPLRVAPS 272
GR +RV+P+
Sbjct: 258 VDLNGRAIRVSPA 270
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A+ +
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 161 LESYEFEGRTLKVNYAKIK 179
L+ + GR ++V+ A+ +
Sbjct: 255 LDGVDLNGRAIRVSPAEAR 273
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ E++ +LF Q GTV E+ + + +R+RG FVTM + +E A+
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 161 LESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISE 218
YE GR L VN A K + PP P+ F++ +++ NL +E L + F SE
Sbjct: 178 FSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIF-SE 236
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V A V++ RS G+GFV+ S+ AI+A G+ GR +RV
Sbjct: 237 HGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRV 287
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
S R+ N+PW + +F +HG V D + + R+RG FVTM S + A
Sbjct: 212 SGLRVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDA 271
Query: 158 LNNLESYEFEGRTLKVNYAK 177
+ L+ +GR ++VN A+
Sbjct: 272 IAALDGQSLDGRAIRVNVAQ 291
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ E + +F+ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 113 KLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEM 172
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--NLFIANLSFEARAKDLREFFISE 218
SYE GR L VN K + P P+ F ++ NL ++ D E SE
Sbjct: 173 FHSYELNGRLLTVN--KAAPRGSRPEKAPREFCPLLSESYVGNLPWDVD-NDRLEQLSSE 229
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSK-KVAETAISAFQGKLFMGRPLRV 269
V+SA V+ RS G+GFV+ S+ ++ + + A G+ GRP+RV
Sbjct: 230 HGKVLSARVVSDRETERSRGFGFVTMASETEMNDATLGALDGESLEGRPIRV 281
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEAT-AALNNLESY 164
N+PW ++ + L +HG VL + S R+RG FVTM S E A L L+
Sbjct: 213 NLPWDVDNDRLEQLSSEHGKVLSARVVSDRETERSRGFGFVTMASETEMNDATLGALDGE 272
Query: 165 EFEGRTLKVNYAKIKKKNPF 184
EGR ++VN A+ + + F
Sbjct: 273 SLEGRPIRVNVAEERPRRTF 292
>gi|303284108|ref|XP_003061345.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
gi|226457696|gb|EEH54995.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
Length = 301
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQH------GTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
R N+ W +T E + FE + G+V++ E++ R++G V SP A
Sbjct: 117 CRCYIGNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAA 176
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV-----QPKPFATFNLFIANLSFEARAK 209
+A+ L + + +GR++ V + P +P+ + + + NL + ++
Sbjct: 177 ESAIATLHNSDLQGRSIIVRLERAGGATKGPGGGANAGRPEASSGLQIVVRNLPWTTTSE 236
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
DLR+ F G +VV A+ + H + RS G+G V F++++ A+ AI F G RP+++
Sbjct: 237 DLRQVFQQVG-NVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELESRPMQI 295
Query: 270 APSR 273
R
Sbjct: 296 KLDR 299
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 21/199 (10%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E++ RL N+PW++ +++RA+F G + +++ + R+RG V S EA
Sbjct: 2 EDQVPANRLYVGNLPWSTDVDELRAIFSSCGAITHVDIPKGRQGRSRGYGIVEYSSAAEA 61
Query: 155 TAALNNLESYEFEGRTLKV--NYAKIKKKNPFPP------------VQPKPFA-TFNLFI 199
AA+ LE + R L V + A K N + P A +I
Sbjct: 62 QAAIAQLEGHTLGDRNLTVREDNAPTKTANSGGGSKSGGGRGSGNVMGETPAAEGCRCYI 121
Query: 200 ANLSFEARAKDLREFF-----ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
NL++E A+ L F S VV+AEV RS G+G V F+S AE+AI
Sbjct: 122 GNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGG-RSKGWGLVDFESPAAAESAI 180
Query: 255 SAFQGKLFMGRPLRVAPSR 273
+ GR + V R
Sbjct: 181 ATLHNSDLQGRSIIVRLER 199
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPD 152
R E S ++V +N+PWT+T ED+R +F+Q G V+ + H+ R++G V + +
Sbjct: 215 RPEASSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETRE 274
Query: 153 EATAALNNLESYEFEGRTLKV 173
+A AA+ E E R +++
Sbjct: 275 QAQAAIQGFNGVELESRPMQI 295
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
++T+L N+P + + LF++ GTV E+ + + +RG AFVTM + EA AA
Sbjct: 100 NRTKLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTVIEAKAA 159
Query: 158 LNNLESYEFEGRTLKVNY--AKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREF 214
+ L+ + GR + VN+ A + + N + + T + LF NL++ + + LR+
Sbjct: 160 IEKLQGSDLGGRDMIVNFPAAVLSRGN---KTEDEYVETPYQLFAGNLAWSVKNEILRDL 216
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
F SE V+ A+V+++ +GFV S+ E AI + GK F GR L V R
Sbjct: 217 F-SEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVSLNGKEFHGRNLVVRQVR 274
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 77 QDPFVDSSSAAAVNTEQREEEYSKT--RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM 134
+D V+ +A + E+EY +T +L A N+ W+ +E +R LF +HGTVL ++
Sbjct: 171 RDMIVNFPAAVLSRGNKTEDEYVETPYQLFAGNLAWSVKNEILRDLFSEHGTVLGAKVVY 230
Query: 135 HSKNRN-RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+SK R FV + S E AA+ +L EF GR L V +
Sbjct: 231 NSKGGVPRAFGFVCLSSQSEMEAAIVSLNGKEFHGRNLVVRQVR 274
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W E ++ FE+ G V+ + + S ++RG +V S A ALN L
Sbjct: 183 LFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSSKAAAEKALNEL 242
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF------NLFIANLSFEARAKDLREFF 215
+ E +GR + ++ + K K P + K F LFI NLSF L E F
Sbjct: 243 QGKEIDGRPVNLDMSTGKPKTPASNDRAKKFGDVPSAPSDTLFIGNLSFNTERNKLFEIF 302
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G VVS + H + ++ G+G+V F S + A+ A+++ G+ GRP R+
Sbjct: 303 GEYG-TVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEYLDGRPCRL 355
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + + +F ++GTV+ L H + +G +V S +EA ALN+L
Sbjct: 284 LFIGNLSFNTERNKLFEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSL 343
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFP 185
+GR +++++ + N P
Sbjct: 344 NGEYLDGRPCRLDFSTPRDNNARP 367
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 41/215 (19%)
Query: 94 REEEYS-KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGS 150
+E+ +S +L N+P+ + LFE G V +E+ ++ K R+RG FVTM S
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKITGRSRGFGFVTMSS 141
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------------- 195
E AA YE +GR L+VN P PP + F+
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVN------AGPPPPKREDGFSRGPRSSFGSSGSGYGGG 195
Query: 196 ---------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+++ NLS+ L F +G VV A VI+ + RS G+GFV++ S
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG-KVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 247 KKVAETAISAFQGKLFMGRPLRVA------PSRQF 275
+ + AI + G GR +RV+ P RQ+
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 41/215 (19%)
Query: 94 REEEYS-KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGS 150
+E+ +S +L N+P+ + LFE G V +E+ ++ K R+RG FVTM S
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKITGRSRGFGFVTMSS 141
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------------- 195
E AA YE +GR L+VN P PP + F+
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVN------AGPPPPKREDGFSRGPRSSFGSSGSGYGGG 195
Query: 196 ---------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+++ NLS+ L F +G VV A VI+ + RS G+GFV++ S
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG-KVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 247 KKVAETAISAFQGKLFMGRPLRVA------PSRQF 275
+ + AI + G GR +RV+ P RQ+
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|367016631|ref|XP_003682814.1| hypothetical protein TDEL_0G02360 [Torulaspora delbrueckii]
gi|359750477|emb|CCE93603.1| hypothetical protein TDEL_0G02360 [Torulaspora delbrueckii]
Length = 402
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 7/185 (3%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
S N + E S L N+ + E ++ F+ G + ++++ + N N A
Sbjct: 28 SVVPANAIKGGRETSDKVLYVGNLDTSINEEILKQYFQVGGPIANVKIMVDKNNSNANYA 87
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
FV +A AL L + E +K+N+A ++ V P ATFNLF+ +L+
Sbjct: 88 FVEYFQSHDANIALQTLNGKQIENNVVKINWAFQSQQ-----VSPDE-ATFNLFVGDLNV 141
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+ + LR F E + V++ S GYGFVSF S++ A+ A+ A QG G
Sbjct: 142 DVDDETLRNAF-KEFPTYLQGHVMWDMQTGGSRGYGFVSFGSQEEAQKAMDAMQGHELNG 200
Query: 265 RPLRV 269
RPLR+
Sbjct: 201 RPLRI 205
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 115 EDIRALFEQHGTVLD--IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
E +R F++ T L + M + +RG FV+ GS +EA A++ ++ +E GR L+
Sbjct: 146 ETLRNAFKEFPTYLQGHVMWDMQTGG-SRGYGFVSFGSQEEAQKAMDAMQGHELNGRPLR 204
Query: 173 VNYA 176
+N+A
Sbjct: 205 INWA 208
>gi|125599171|gb|EAZ38747.1| hypothetical protein OsJ_23149 [Oryza sativa Japonica Group]
Length = 220
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 19/195 (9%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
T +I F + G V ++++ ++ K +R+RG AFVTM + +EA A+ GRT
Sbjct: 2 TSGEISQTFSEAGRVDNVQI-IYDKVTDRSRGFAFVTMATAEEAATAIQMFNGALLGGRT 60
Query: 171 LKVNYAKIKKKNPFPPVQP-------KPFATFNLFIANLSFEARAKDLREFFISEGW-DV 222
+VNY ++ + + TF ++ NL + RA LR F EG +
Sbjct: 61 ARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRAAF--EGQPGL 118
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF------A 276
+ A VIF + RS G+GFVSF++ + A+ A+ A G GRPLR++ + Q +
Sbjct: 119 LDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMAEQNPTAGSPS 178
Query: 277 RLQTKEGLHSDETSD 291
+Q++E + E+SD
Sbjct: 179 TVQSQEEETASESSD 193
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRG 142
SAAA +R++ K + A N+ W + +RA FE +LD + R+RG
Sbjct: 77 GSAAATRENRRDDGTFK--IYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRG 134
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP 183
FV+ + ++A AAL L+ E EGR L+++ A ++NP
Sbjct: 135 FGFVSFRTAEDAQAALEALDGVELEGRPLRLSMA---EQNP 172
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
E + +L N+P T T++++R +F HGTV E+ M+ K NR+R FVTM + +E
Sbjct: 64 EAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEV-MYDKYTNRSRRFGFVTMSTAEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA+ L E R +KVN + N P+P A F +++ NL+
Sbjct: 123 ANAAVEALNGTEVGDRKIKVNVTESFLPN-IDRSAPEPEALFVDSQYKVYVGNLAKTVTT 181
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
+ L+ FF SE +++SA V +S GYGFV+F S++ E A++ F G+ +R
Sbjct: 182 EVLKNFF-SEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAELEGQLIR 240
Query: 269 V 269
V
Sbjct: 241 V 241
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATAA 157
S+ ++ N+ T T E ++ F + G +L +S + ++++G FVT S +E AA
Sbjct: 166 SQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAA 225
Query: 158 LNNLESYEFEGRTLKVNYA 176
+ + E EG+ ++VN A
Sbjct: 226 VATFNNAELEGQLIRVNRA 244
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 34/218 (15%)
Query: 83 SSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NR 139
SS + E+ E+S+ R+ N+P++ + LFEQ G+V +E+ ++ K R
Sbjct: 58 SSDVETDDAEESAGEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV-IYDKLTGR 116
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP---VQPKPF---- 192
+RG FVTM + +E A+ L Y +GRT+KVN P PP P+ F
Sbjct: 117 SRGFGFVTMSTVEEVEEAVEQLNGYVLDGRTIKVN------SGPPPPRDQSSPRGFREQS 170
Query: 193 --------------ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++ NLS+ L F +G V+ A VI+ RS G
Sbjct: 171 SGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQG-SVLGARVIYDRESGRSRG 229
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLR--VAPSRQ 274
+GFV++ S + E A+S G GR +R VA +RQ
Sbjct: 230 FGFVTYGSSEEVEKAVSNLDGTDLDGRQIRVTVAEARQ 267
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKN 138
F + SS R R+ N+ W + LF + G+VL +
Sbjct: 166 FREQSSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESG 225
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
R+RG FVT GS +E A++NL+ + +GR ++V A+ ++
Sbjct: 226 RSRGFGFVTYGSSEEVEKAVSNLDGTDLDGRQIRVTVAEARQ 267
>gi|412986331|emb|CCO14757.1| predicted protein [Bathycoccus prasinos]
Length = 290
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGT----VLDIELSMHSKNRNRGLAFVTMGSP 151
E R N+ W + D +AL E T VL E++ S R++G A + S
Sbjct: 108 EAEEGCRCYVGNLAWET---DEQALIEHCQTIGHPVLRCEVARQSGGRSKGWALIDFASK 164
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARA 208
+ A A + L E R++ V + P ++P+ + + + NL + +
Sbjct: 165 EAADAGVKALHDTECRARSIIVRAERPGGAAATKPPREIRPENSSGLQIVVRNLPWSTTS 224
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
DLR+ F G VV A+ HD+ RS G+G V F++++ A+ AI+ F G GRP++
Sbjct: 225 DDLRQVFQQVG-TVVDAKSTCHDDTGRSKGWGTVLFETQEQAQAAIAGFNGVELEGRPMQ 283
Query: 269 VAPSR 273
+ R
Sbjct: 284 IKIDR 288
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 27/204 (13%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E+ RL N+PW++T E+++ LF +IE+ +NR+RG A V+ A
Sbjct: 4 EQPQSNRLYVGNIPWSTTVEELQGLFTD---AENIEIPTGRQNRSRGYALVSFSDESAAQ 60
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFP-------------PVQ-----PKPFATFNL 197
+A+ + + R + V + NP P PVQ P+
Sbjct: 61 SAMQAMNGHALGDRNISV-----RADNPLPKAPKSSSRGSGGAPVQRPTNLPEAEEGCRC 115
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL++E + L E + G V+ EV RS G+ + F SK+ A+ + A
Sbjct: 116 YVGNLAWETDEQALIEHCQTIGHPVLRCEVARQSGG-RSKGWALIDFASKEAADAGVKAL 174
Query: 258 QGKLFMGRPLRVAPSRQFARLQTK 281
R + V R TK
Sbjct: 175 HDTECRARSIIVRAERPGGAAATK 198
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGS 150
E R E S ++V +N+PW++T +D+R +F+Q GTV+D + + H R++G V +
Sbjct: 202 EIRPENSSGLQIVVRNLPWSTTSDDLRQVFQQVGTVVDAKSTCHDDTGRSKGWGTVLFET 261
Query: 151 PDEATAALNNLESYEFEGRTLKV 173
++A AA+ E EGR +++
Sbjct: 262 QEQAQAAIAGFNGVELEGRPMQI 284
>gi|413941709|gb|AFW74358.1| hypothetical protein ZEAMMB73_309849 [Zea mays]
Length = 826
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L N+P +D+ LF HGTVL +E+S +++ +RG A VTM S EA AA++ L
Sbjct: 643 LFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAIDAL 702
Query: 162 ESYEFEGRTLKVNYAK---IKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
+ ++ +GR + V A +KN P + F T +++ NL++ + +DLRE
Sbjct: 703 DGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDLRE 762
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G VVS ++ R+ YGF+SF S + E A+ +F GR + V
Sbjct: 763 LFTQCG-TVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALK-LDRTVFFGRDIVV 816
>gi|366990603|ref|XP_003675069.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
gi|342300933|emb|CCC68698.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
Length = 443
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 7/208 (3%)
Query: 62 PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALF 121
P+ P +A Q SS + Q E S L N+ + + ++ F
Sbjct: 44 PESADPVSEAPAAGEQSAENQESSVVPASATQGGRETSDRVLYVGNLDKSINEDLLKQYF 103
Query: 122 EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+ G + D+++ + KN N AF+ +A AL L + EG+T+++N+A ++
Sbjct: 104 QVGGQITDVKIMVDKKNNNVNYAFIEYLKSHDANVALQTLNGIQIEGKTVRINWAFQSQQ 163
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
TFNLF+ +L+ + + L F + V A V++ RS GYGF
Sbjct: 164 T------TNSDDTFNLFVGDLNVDVDDETLSHAF-DQFPSYVQAHVMWDMQTGRSRGYGF 216
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
VSF ++ A+ A++ QG GR +R+
Sbjct: 217 VSFADQEQAQEAMNVMQGMPINGRAVRI 244
>gi|295789540|pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 8/167 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T + ++ F+ G + +I++ + N+N AFV +A AL L
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 62
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ E +K+N+A F Q TFNLF+ +L+ + LR F +
Sbjct: 63 GKQIENNIVKINWA-------FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSY 114
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+S V++ S GYGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 115 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ E + +FE G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 112 KLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 171
Query: 161 LESYEFEGRTLKVNYAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+E GR L VN A + P P + +P +F +++ NL ++ L + F SE
Sbjct: 172 YHKFEVNGRFLTVNKAAPRGSRPERAPREYEP--SFRVYVGNLPWDVDDARLEQVF-SEH 228
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+SA V+ RS G+ FV+ S+ AI A G+ GR +RV
Sbjct: 229 GKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGALDGQTLEGRAIRV 278
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + +F +HG VL + S R+RG AFVTM S E A+
Sbjct: 206 RVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGA 265
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ EGR ++VN A+ + + F
Sbjct: 266 LDGQTLEGRAIRVNVAEERPRRSF 289
>gi|388582392|gb|EIM22697.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 326
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 19/191 (9%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T+L N+P+ +D++ LF Q G V+ ++ + +++G V+ S ++A A+
Sbjct: 126 TQLFVGNLPFQVGWQDLKDLFRQAGHVVRADIQLFPDGKSKGNGIVSFSSREDANNAIEL 185
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF----------------ATFNLFIANLSF 204
YEF GR ++V K +P P P F + NL +
Sbjct: 186 YNGYEFYGRPIEVREDKF-ANSPRPSRTPYQFNRKAPQGPAPVPAAAAPNPQIVSKNLPW 244
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+DL E F + G DV AE++ +RS G G V F S A AI F G ++ G
Sbjct: 245 STSNEDLVELFETTG-DVKKAEILIDSRTQRSRGVGIVEFFSTAAASVAIEKFNGYVYGG 303
Query: 265 RPLRVA-PSRQ 274
RPL + SRQ
Sbjct: 304 RPLEIGFSSRQ 314
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 197 LFIANLSFEARAKDLREFFI--SEG--WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
+++ NL++E +++DL+ FF +EG +V SAEV+ N S G G V F S + A+
Sbjct: 12 VYVGNLNYEVKSEDLKSFFQDNAEGQVLEVASAEVLITPNG-LSKGCGIVEFTSPESAQI 70
Query: 253 AISAFQGKLFMGRPLRVAPSRQ 274
AI +F K +GRP+ V R+
Sbjct: 71 AIESFSDKSLLGRPVFVREDRE 92
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR 139
F++ AA+ Q T + +N+ T T + + LF Q+GTV + + R
Sbjct: 186 FINKDERAAMAGNQ-----DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGR 240
Query: 140 NRGLAFVTMGSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPP-VQPKPF 192
+RG FV +P+ A A+ +L + F G+ LK + + K F KP
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPN 300
Query: 193 ATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+ NL++ NLS LRE F G +VSA+V+ H+N RS G+GFV F + + ++
Sbjct: 301 MRWSNLYVKNLSESMNETRLREIFGCYG-QIVSAKVMCHENG-RSKGFGFVCFSNCEESK 358
Query: 252 TAISAFQGKLFMGRPL--RVAPSRQ--FARLQ 279
A G L G+P+ RVA ++ RLQ
Sbjct: 359 QAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQ 390
>gi|225679309|gb|EEH17593.1| nucleic acid-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 960
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR 139
F D++S N E + E + N+ + T +D++ + G +L + + S+
Sbjct: 753 FRDNTSILRSNPEVKPNE----TIYIGNLFFEVTADDLKRDLSKFGNILAVRIVYDSRGM 808
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+RG A+V S D A AA+N + +EGR + VNY+ NP P +P T LFI
Sbjct: 809 SRGFAYVQFDSIDAAEAAINEMNMTIYEGRRVVVNYSSRGSANPTPTRSNEP--TRTLFI 866
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSFE ++L E F + +V V + G+ F + A+ A +
Sbjct: 867 GNLSFEMSDRELNELF-KDIKNVTDVRVSVDRRTGQPRGFAHADFLDVESAQAAFEILKD 925
Query: 260 KLFMGRPLRV 269
K GRPLR+
Sbjct: 926 KAPYGRPLRL 935
>gi|226532724|ref|NP_001151236.1| RNA binding protein [Zea mays]
gi|195645238|gb|ACG42087.1| RNA binding protein [Zea mays]
Length = 257
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T DIR LFE +G + ++LS + N RGLAF+ S ++A
Sbjct: 75 YEPGKVVASGLPYTTTEADIRKLFEFYGPIQSMQLSRFPDSGNFRGLAFLCFESEEDAIK 134
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+K F K + ++ NLS+ D
Sbjct: 135 SL-ELDGFKIGSRYMRVERCRVTATSNKKRKAEFETDPKKSEGCLSAYVGNLSWNVDEND 193
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGF--VSFKSKKVAETAISAFQGKLFMGRPLR 268
LR FF G + A V F + R GF V F+ + E AI+ Q KL GRP++
Sbjct: 194 LRGFF---GPSKI-ASVRFAVDKRTGGSRGFCHVEFQDDESLEKAIAMNQSKL-QGRPVK 248
Query: 269 VA 270
VA
Sbjct: 249 VA 250
>gi|194697124|gb|ACF82646.1| unknown [Zea mays]
gi|414864467|tpg|DAA43024.1| TPA: RNA binding protein [Zea mays]
Length = 257
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T DIR LFE +G + ++LS + N RGLAF+ S ++A
Sbjct: 75 YEPGKVVASGLPYTTTEADIRKLFEFYGPIQSMQLSRFPDSGNFRGLAFLCFESEEDAIK 134
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+K F K + ++ NLS+ D
Sbjct: 135 SL-ELDGFKIGSRYMRVERCRVTATSNKKRKAEFETDPKKSEGCLSAYVGNLSWNVDEND 193
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGF--VSFKSKKVAETAISAFQGKLFMGRPLR 268
LR FF G + A V F + R GF V F+ + E AI+ Q KL GRP++
Sbjct: 194 LRGFF---GPSKI-ASVRFAVDKRTGGSRGFCHVEFQDDESLEKAIAMNQSKL-QGRPVK 248
Query: 269 VA 270
VA
Sbjct: 249 VA 250
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 27/192 (14%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIE----LSMHSKNRNRGLAFVTMGSPDEATAA 157
+L N+PWT D L E G + +E + R+RG AFVTM + + A +
Sbjct: 1 KLYVGNLPWTC---DSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSV 57
Query: 158 LNNLESYEFEGRTLKV----------------NYAKIKKKNPFPPVQPKPFATFN---LF 198
++ L+ +F GR LKV N + +++ PP Q N +F
Sbjct: 58 IDRLDGSDFGGRPLKVSFPQPRENRDNKPRFGNNERGDRRSDRPPRQGSDRVLDNTNKMF 117
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I NLS+ A L + F SE VV A+V++ + +S G+GFV+ + A+
Sbjct: 118 IGNLSWSCDADALVQVF-SEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLD 176
Query: 259 GKLFMGRPLRVA 270
G F GR +RV+
Sbjct: 177 GAEFEGREMRVS 188
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
++ N+ W+ + + +F ++G+V+D ++ ++RG FVTM + E + A+
Sbjct: 114 NKMFIGNLSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQ 173
Query: 160 NLESYEFEGRTLKVNYA 176
NL+ EFEGR ++V+ A
Sbjct: 174 NLDGAEFEGREMRVSEA 190
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ ++ N+P+ E + +F+Q G V E+ + + ++RG FVTM + +EA A+
Sbjct: 107 EAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAI 166
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN A + P + FA F ++ NL ++ L + F S
Sbjct: 167 EMFSRYDISGRLLNVNRASSRGTRMERP--QRQFAPAFRAYVGNLPWQVDDSRLVQLF-S 223
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
E +VV A+V++ RS G+GFVS SK+ AISA G++
Sbjct: 224 EHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQV 267
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 28/132 (21%)
Query: 161 LESYEFE-----GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+E+ EFE G + YA ++ PP + K +++ NL ++ ++ L + F
Sbjct: 80 MEAGEFEEVLASGGEGEGQYAAVE-----PPEEAK------VYVGNLPYDVDSEGLAQIF 128
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV------ 269
G V AEVI++ +S G+GFV+ + + A+ AI F GR L V
Sbjct: 129 DQAGV-VEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMFSRYDISGRLLNVNRASSR 187
Query: 270 -----APSRQFA 276
P RQFA
Sbjct: 188 GTRMERPQRQFA 199
>gi|326497679|dbj|BAK05929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 12/177 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L N+P +++ LF +GTVL +E+S ++ +RG FVTM S EA A+N L
Sbjct: 130 LFVCNLPRRCGVDELLELFGPYGTVLSVEVSRDAETGISRGCGFVTMRSLAEARTAINAL 189
Query: 162 ESYEFEGRTLKVNYAK---IKKKNPF-----PPVQPKPFAT-FNLFIANLSFEARAKDLR 212
+ ++ +GR + V A ++NP PP++ F + + +++ NL++ + + LR
Sbjct: 190 DGFDLDGREMFVKLAAHVIASRRNPGGLSHTPPMKDHIFESRYKIYVGNLAWSVQPQHLR 249
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E F G VVS ++ RS YGF+SF S + E A+ F GR + V
Sbjct: 250 EHFTKCG-TVVSTRLLTDRKGGRSRVYGFLSFSSAEELEAALQ-LNNTEFHGRDIIV 304
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAA 157
S+ ++ N+ W+ + +R F + GTV+ L K R+R F++ S +E AA
Sbjct: 230 SRYKIYVGNLAWSVQPQHLREHFTKCGTVVSTRLLTDRKGGRSRVYGFLSFSSAEELEAA 289
Query: 158 LNNLESYEFEGRTLKVNYAKIK 179
L L + EF GR + V A +K
Sbjct: 290 LQ-LNNTEFHGRDIIVREAHVK 310
>gi|260841407|ref|XP_002613907.1| hypothetical protein BRAFLDRAFT_268603 [Branchiostoma floridae]
gi|229299297|gb|EEN69916.1| hypothetical protein BRAFLDRAFT_268603 [Branchiostoma floridae]
Length = 321
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 12/175 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAA 157
SKT LV +N+ W +T E + FE LD + M +R+RG +V S + A A
Sbjct: 115 SKT-LVVRNLSWDTTSEGLMQAFEGS---LDARVIMKPGTDRSRGFGYVDFESEEAAKEA 170
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF---ATFNLFIANLSFEARAKDLREF 214
++++ E +GRT+ V + ++ A+ L + NLS++ DL E
Sbjct: 171 MDDMNQSELDGRTINVEFGTGRRGGGGGGGGGYGSHLQASKTLIVKNLSYDTGEDDLLEA 230
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F+ + A V+ RRS G+G++ F S+ A+ A+ G+ GR +R+
Sbjct: 231 FVG----CIDARVVTDRESRRSKGFGYIDFDSEDAAKEALKNMDGQELDGRGIRL 281
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNL 161
L +N+ + ST E + +F +D+ + ++ R++G+A++ S + + +
Sbjct: 22 LFLKNLSYNSTVESVMEVFTD---AVDVRIPVYRDSGRSKGIAYLEFESEAKVEEVKSTM 78
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLREFFIS 217
+ E +GR++ ++Y K + P Q + L + NLS++ ++ L + F
Sbjct: 79 DGVEVDGRSVVMDYVGAKAQFTGRPQQGSGRGPGTPSKTLVVRNLSWDTTSEGLMQAF-- 136
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
EG + A VI RS G+G+V F+S++ A+ A+ GR + V
Sbjct: 137 EG--SLDARVIMKPGTDRSRGFGYVDFESEEAAKEAMDDMNQSELDGRTINV 186
>gi|226291029|gb|EEH46457.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 273
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR 139
F D++S N E + E + N+ + T +D++ + G +L + + S+
Sbjct: 66 FRDNTSILRSNPEVKPNET----IYIGNLFFEVTADDLKRDLSKFGNILAVRIVYDSRGM 121
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+RG A+V S D A AA+N + +EGR + VNY+ NP P +P T LFI
Sbjct: 122 SRGFAYVQFDSIDAAEAAINEMNMTIYEGRRVVVNYSSRGSANPTPTRSNEP--TRTLFI 179
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSFE ++L E F + +V V + G+ F + A+ A +
Sbjct: 180 GNLSFEMSDRELNELF-KDIKNVTDVRVSVDRRTGQPRGFAHADFLDVESAQAAFEILKD 238
Query: 260 KLFMGRPLRV 269
K GRPLR+
Sbjct: 239 KAPYGRPLRL 248
>gi|218201679|gb|EEC84106.1| hypothetical protein OsI_30426 [Oryza sativa Indica Group]
Length = 758
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 182 ALHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFA 234
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F S++ A A+SA G M
Sbjct: 235 PYGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
>gi|212722626|ref|NP_001131649.1| uncharacterized protein LOC100193009 [Zea mays]
gi|194692152|gb|ACF80160.1| unknown [Zea mays]
Length = 314
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L N+P +D+ LF HGTVL +E+S +++ +RG A VTM S EA AA++ L
Sbjct: 131 LFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAIDAL 190
Query: 162 ESYEFEGRTLKVNYAK---IKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
+ ++ +GR + V A +KN P + F T +++ NL++ + +DLRE
Sbjct: 191 DGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDLRE 250
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G VVS ++ R+ YGF+SF S + E A+ +F GR + V
Sbjct: 251 LFTQCG-TVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALK-LDRTVFFGRDIVV 304
>gi|34555650|gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [Oryza sativa Indica
Group]
Length = 626
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 21 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 80
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 81 ALHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFA 133
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F S++ A A+SA G M
Sbjct: 134 PYGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 178
>gi|115478012|ref|NP_001062601.1| Os09g0123200 [Oryza sativa Japonica Group]
gi|34555646|gb|AAQ74971.1| flowering time control protein isoform OsFCA-3 [Oryza sativa Indica
Group]
gi|113630834|dbj|BAF24515.1| Os09g0123200 [Oryza sativa Japonica Group]
Length = 637
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 21 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 80
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 81 ALHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFA 133
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F S++ A A+SA G M
Sbjct: 134 PYGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 178
>gi|34555648|gb|AAQ74972.1| flowering time control protein isoform OsFCA-2 [Oryza sativa Indica
Group]
Length = 649
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 182 ALHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFA 234
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F S++ A A+SA G M
Sbjct: 235 PYGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 23/196 (11%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160
+L N+P+ + LF+ G V +E+ R+RG FVTM + +E AA
Sbjct: 92 QLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQ 151
Query: 161 LESYEFEGRTLKVN----------YAKI-KKKNPF---PPVQP-KPFATFN-LFIANLSF 204
YE +GR L+VN ++++ +++N F P + + F + N +++ NLS+
Sbjct: 152 FNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSSNRVYVGNLSW 211
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
L F +G V+ A+V++ + RS G+GFV++ S + E A+ + G G
Sbjct: 212 NVDDSALESLFREKG-KVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDG 270
Query: 265 RPLRVA-----PSRQF 275
R +RV+ P R+F
Sbjct: 271 RAIRVSVAEAKPRRRF 286
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S R+ N+ W + +LF + G V+D ++ R++G FVT S +E A
Sbjct: 200 SSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDA 259
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
+++L E +GR ++V+ A+ K + F
Sbjct: 260 VDSLNGAELDGRAIRVSVAEAKPRRRF 286
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
LF+ NL F + L + F S G +V EV + RS G+GFV+ + + E A
Sbjct: 91 LQLFVGNLPFNVNSAQLADLFKSAG-NVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAAS 149
Query: 255 SAFQGKLFMGRPLRV----APSRQ--FARLQTKE-------GLHSDETSDDLN 294
F G GRPLRV P R+ F+RL +E G ET D N
Sbjct: 150 QQFNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSSN 202
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 27/187 (14%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T E+ LFE++G + + L+ + + RG AFV + D A A++
Sbjct: 250 TNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDE 309
Query: 161 LESYEFEGRTLKVNYA-----------------KIKKKNPFPPVQPKPFATFNLFIANLS 203
L +E++G+ L V A K++K N + V NLF+ NL
Sbjct: 310 LNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGV--------NLFVKNLQ 361
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
E + L+ F + G + SA+V+ +N +S G+GFV + + + A AI+ ++
Sbjct: 362 DEIDDERLKSEFSAFGT-ITSAKVMTDEN-NKSKGFGFVCYSNPEEATKAIAEMNQRMLA 419
Query: 264 GRPLRVA 270
G+PL VA
Sbjct: 420 GKPLYVA 426
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V I + + R+ G A+V + ++ AL+ L +GR ++ +++
Sbjct: 88 LFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQ- 146
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + T N+FI NL K L + F + G ++S +V D S G
Sbjct: 147 --RDP----SLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG-KILSCKVAV-DELGNSKG 198
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
YGFV F S A AI G L + + V
Sbjct: 199 YGFVHFDSVDSANAAIEHVNGMLLNDKKVYVG 230
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++++ ++G FV S D A AA+ ++ + +
Sbjct: 169 DNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVY 228
Query: 173 VNY--AKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
V + ++ +++ F ++ A F N+++ NL + ++ + F E + +++ +
Sbjct: 229 VGHHISRRDRQSKFEALK----ANFTNVYVKNLDLDTTEEEFTKLF--EKYGKITSLSLA 282
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAIS-----AFQG-KLFMGR 265
DN + G+ FV+F + A+ A+ ++G KL++GR
Sbjct: 283 KDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGR 324
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E +++ F GT+ ++ N+++G FV +P+EAT
Sbjct: 349 KYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATK 408
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ + G+ L V A+ K+
Sbjct: 409 AIAEMNQRMLAGKPLYVALAQRKE 432
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N ST +++R LFE +G + I L + S+ N+G FV D+A A+
Sbjct: 233 TNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEA 292
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQP---------KPFATFNLFIANLSFEARAKDL 211
L E++G+ L V A+ K + + + + + NLFI NL L
Sbjct: 293 LNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARL 352
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ +N +S G+GFV + + A AIS ++ +PL VA
Sbjct: 353 EEEFKPFGT-ITSAKVMLDEN-GKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVA 409
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G VL +++ ++G FV S + A AA+ N+ GR + V + K
Sbjct: 160 FSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVG-PHLAK 218
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K+ Q N+F+ N E+ +LRE F E + +++ + D+ + G+G
Sbjct: 219 KDRESRFQEMIKNYTNVFVKNFDTESTEDELRELF--ESYGPITSIHLQVDSEGHNKGFG 276
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV+F A A+ A K + G+PL V
Sbjct: 277 FVNFAEHDDAVKAVEALNDKEYKGKPLYVG 306
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 10/200 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
+ T + P + +A N + + L + T T D+ F G+V I +
Sbjct: 24 AVTEETPATSTEAAEESNESSTQASETLASLYVGELDPTVTESDLYEFFSPIGSVNSIRV 83
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
+ R+ G +V S AL L E +G ++ +++ ++P +
Sbjct: 84 CRDAVTKRSLGYGYVNFHSQAAGERALEELNYAEIKGVRCRLMWSQ---RDP----SLRR 136
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+ N+FI NL K L + F S G V+S +V +N S G+GFV ++S + A+
Sbjct: 137 SGSGNIFIKNLDPAIENKTLHDTFSSFG-KVLSCKVATDEN-GNSKGFGFVHYESDEAAQ 194
Query: 252 TAISAFQGKLFMGRPLRVAP 271
AI G L GR + V P
Sbjct: 195 AAIENINGMLLNGREIYVGP 214
>gi|33390912|gb|AAQ17123.1| flowering time control protein isoform OsFCA-1 [Oryza sativa Indica
Group]
gi|47496990|dbj|BAD20100.1| Flowering time control protein FCA gamma-like [Oryza sativa
Japonica Group]
gi|50261763|gb|AAT72462.1| FCA gamma protein [Oryza sativa Japonica Group]
gi|58003966|gb|AAW62371.1| FCA [Oryza sativa Japonica Group]
Length = 738
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T +D+R LFE+HG V+++ L K +G FV + +EA A+
Sbjct: 122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 182 ALHNQYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATAKEIEEIFA 234
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F S++ A A+SA G M
Sbjct: 235 PYGH--VEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
>gi|414588979|tpg|DAA39550.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 708
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T ED+R LFE+HG VL++ L K +G FV + +EA A+
Sbjct: 122 VKLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ LF+A+L+ +A K++ E F
Sbjct: 182 GLHNHYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATPKEIEEIFA 234
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D+ ++S G GFV F SK+ A A++A G M
Sbjct: 235 PYGH--VEDVYIMRDSVKQSRGCGFVKFSSKEAAVEAMNALSGTYTM 279
>gi|293333224|ref|NP_001169298.1| uncharacterized protein LOC100383162 [Zea mays]
gi|224028499|gb|ACN33325.1| unknown [Zea mays]
gi|414588978|tpg|DAA39549.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 735
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T ED+R LFE+HG VL++ L K +G FV + +EA A+
Sbjct: 122 VKLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ LF+A+L+ +A K++ E F
Sbjct: 182 GLHNHYTLPGAMGPIQVRYADGERER-------HGAIEHKLFVASLNKQATPKEIEEIFA 234
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D+ ++S G GFV F SK+ A A++A G M
Sbjct: 235 PYGH--VEDVYIMRDSVKQSRGCGFVKFSSKEAAVEAMNALSGTYTM 279
>gi|320588360|gb|EFX00829.1| rnp domain containing protein [Grosmannia clavigera kw1407]
Length = 363
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 22/178 (12%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDI---ELSMHSKNRNRGLAFVTMGSPDEATAAL 158
++ N+P+T +D++ LF Q + ++++ R+RG V SPD+A A+
Sbjct: 171 QIYVANLPFTIGWQDLKDLFRQAARTAGVARADINIGPDGRSRGSGIVVFESPDDARNAI 230
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN------LFIANLSFEARAKDLR 212
Y+++GR L+V NPF AT +F+ NL + +DL
Sbjct: 231 QQFNGYDWQGRVLEV------PPNPF-----TDHATSGNEPSEIIFVRNLPWSTSNEDLV 279
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F + G V AE+ + + RS G G V F + + A+TAIS FQG + GRPL ++
Sbjct: 280 ELFGTIG-KVEQAEIQYEPS-GRSRGSGVVRFDNPETADTAISKFQGYQYGGRPLGLS 335
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
+ +N+PW++++ED+ LF G V E+ R+RG V +P+ A A++ +
Sbjct: 264 IFVRNLPWSTSNEDLVELFGTIGKVEQAEIQYEPSGRSRGSGVVRFDNPETADTAISKFQ 323
Query: 163 SYEFEGRTLKVNYAK 177
Y++ GR L +++ K
Sbjct: 324 GYQYGGRPLGLSFVK 338
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 185 PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP-RRSAGYGFVS 243
P P + +++ANL F +DL++ F A + P RS G G V
Sbjct: 160 PGFNPGMGGSRQIYVANLPFTIGWQDLKDLFRQAARTAGVARADINIGPDGRSRGSGIVV 219
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRVAPS 272
F+S A AI F G + GR L V P+
Sbjct: 220 FESPDDARNAIQQFNGYDWQGRVLEVPPN 248
>gi|428170953|gb|EKX39874.1| hypothetical protein GUITHDRAFT_154318 [Guillardia theta CCMP2712]
Length = 270
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 10/177 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K R+ +P+ +T +DI+ +FE G + +IEL M++ +R G F+T D A+
Sbjct: 24 KRRVFLGGLPFKATEKDIKKMFESCGAIENIELPMNADSRPAGFGFLTFKDADSVAKAV- 82
Query: 160 NLESYEFEGRTLKVNYAKIKK----KNPFPPV---QPKPFATFNLFIANLSFEARAKDLR 212
++ E GR +KV A + K PF P +PKP +F+ NLS++ +R
Sbjct: 83 AMDGQELMGRWVKVKEADGTEGSAGKKPFTPNREPKPKPDGCTTIFMGNLSWDVDEDTIR 142
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
FF G +VV+ G+G V F + A+ A G+ GR +RV
Sbjct: 143 SFFADCG-EVVNVRFATDRETGDFKGFGHVQFAESSATDLAV-AKGGEFVAGRAIRV 197
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNL 161
L N+P +D+ LF+ +GTVL +E+S + +RG FVTM S EA A+N L
Sbjct: 136 LFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNAL 195
Query: 162 ESYEFEGRTLKVNYAK---IKKKN----PFPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
+ ++ +GR + V + K++N PPV+ F + +++ N+++ ++LRE
Sbjct: 196 DGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELRE 255
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+F S+ VVS ++ R YGF+SF S + E A+ F GR + V
Sbjct: 256 YF-SQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALK-LDNTHFHGRNILV 309
>gi|50308683|ref|XP_454345.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643480|emb|CAG99432.1| KLLA0E08779p [Kluyveromyces lactis]
Length = 475
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 8/202 (3%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
+ SAA V Q E S L N+P + + ++ F+ G++ +++ ++
Sbjct: 78 EDDSAAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC 137
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV P +A A L E EG+ LK+N+A F Q TFNLF+ +
Sbjct: 138 NYAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWA-------FQSQQVNSDETFNLFVGD 190
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L+ + L F E + A V++ RS GYGFVSF + A+ A+ QG
Sbjct: 191 LNVDVDDATLAGTF-KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFE 249
Query: 262 FMGRPLRVAPSRQFARLQTKEG 283
GR LR+ + + Q+++G
Sbjct: 250 LNGRALRINWASKREPQQSQQG 271
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
+E+ Y T + +N+ T E++ +F +HG V + +++G F+ +
Sbjct: 208 KEQHY--TNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEG 265
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSF 204
A AA+ L E +G+ L A+ K K F V+ + A + NL++ NL
Sbjct: 266 AHAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVD 325
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
E LR F G + SA+V+ D+ +S G+GFV + S + A A++ GK+ +G
Sbjct: 326 EVDDDQLRAEFAPHGT-ITSAKVM-KDSAGKSKGFGFVCYSSPEEATRAVTEMNGKMLLG 383
Query: 265 RPLRVA 270
+P+ VA
Sbjct: 384 KPMYVA 389
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F GT+L +++ ++G FV + A A+ + EG+ K
Sbjct: 135 DNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGK--K 192
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V K+ P + + + N+F+ NLS +++ + F G +V++ I D
Sbjct: 193 VFVGPFLKRTERPVDKEQHYT--NVFVKNLSENLTDEEVEKMFNEHG--MVTSFAIMKDE 248
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
+S G+GF++F+ + A A++A GK G+ L
Sbjct: 249 AGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKEL 283
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R +Y L +N+ + +RA F HGT+ ++ S +++G FV SP
Sbjct: 307 QERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSP 366
Query: 152 DEATAALNNLESYEFEGRTLKVNYAK 177
+EAT A+ + G+ + V A+
Sbjct: 367 EEATRAVTEMNGKMLLGKPMYVALAQ 392
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 113 THEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T ++ +FE+ G V E + +R+RG FVTM S +EA A+ + GRTL
Sbjct: 2 TSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRTL 61
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFI--------ANLSFEARAKDLREFFISEGWDVV 223
+VN+ ++ + ++P+ + + FI NL + ++ L + F ++ ++
Sbjct: 62 RVNFPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQ-PGLL 120
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
SA+VI+ + RS G+GFVSF S + AE A+ A G+ GRPLR+
Sbjct: 121 SAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNGEEVDGRPLRL 166
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 25/220 (11%)
Query: 49 SSSPFHAYTFPITPKKVSPFV-FHFSATTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQ 106
SS PFH+ + + F+ + + T + P +D SS AA R+
Sbjct: 34 SSKPFHSLAGTFSRSSRTRFIPYAVTETEEKPAALDPSSEAA------------RRVYIG 81
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESY 164
N+P T T+E + L E+HG V +++ M+ K R+R F TM S ++A A + L
Sbjct: 82 NIPRTVTNEQLTKLVEEHGAVEKVQV-MYDKYSGRSRRFGFATMKSVEDANAVVEKLNGN 140
Query: 165 EFEGRTLKVNYAK--IKKKNP-FPPVQPKPFA----TFNLFIANLSFEARAKDLREFFIS 217
EGR +KVN + I +P +Q + A + +++ NL+ + K++ E S
Sbjct: 141 TVEGREIKVNITEKPIASSSPDLSLLQSEDSAFVDSPYKVYVGNLA-KTVTKEMLENLFS 199
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
E VVSA+V +S G+GFV+F S++ E AI A
Sbjct: 200 EKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAILAL 239
>gi|255718453|ref|XP_002555507.1| KLTH0G10912p [Lachancea thermotolerans]
gi|238936891|emb|CAR25070.1| KLTH0G10912p [Lachancea thermotolerans CBS 6340]
Length = 436
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 8/188 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
+ + N + E S L N+ T E ++ F+ G++ ++++ M N+
Sbjct: 48 EEPTVTPANASRGGRETSDRILYVGNLDLAVTEEMLKQYFQVGGSIANVKILMDKNNKQA 107
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV P +A A L+ + E +K+N+A F Q TFNLF+ +
Sbjct: 108 NYAFVEFHQPHDANVAFQTLDGKQIENHVIKINWA-------FQSQQVSSEDTFNLFVGD 160
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L+ + + L F + + A V++ RS GYGFVSF + A+ A+ QG +
Sbjct: 161 LNVDVDDETLARTF-KDIPTFIQAHVMWDMQTGRSRGYGFVSFGEQTQAQKAMEDNQGAV 219
Query: 262 FMGRPLRV 269
GR +R+
Sbjct: 220 VNGRAIRI 227
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
AV R T + N+P +T +D+ L + G ++D + +RG F+
Sbjct: 308 AVEAMMRSAPPRVTTVYIGNIPHFATEQDLIPLLQNFGFIVDFK-----HYPDRGCCFIK 362
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
G+ ++A + L ++ F+GR L+ + K +K + P QPKP
Sbjct: 363 YGTHEQAAVCILTLGNFPFQGRNLRTGWGK-EKPSYIP--QPKP 403
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T ED LF+ +GT+ + L ++ ++RG FV + ++A A+
Sbjct: 224 TNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEA 283
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E++G+TL V A+ K K + + + A + NLFI NL + L
Sbjct: 284 LNDTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKL 343
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F G + SA V+ +N +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 344 KEEFAPFGT-ITSARVMRTEN-GKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVA 400
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G+V I + + + G A+V + A+ L +GR ++ +++
Sbjct: 62 IFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYTAIKGRPCRIMWSQR 121
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
P ++ K + N+FI NL + K L E F G +++S + I +D +S G
Sbjct: 122 D-----PSMRKK--GSGNIFIKNLHPDIDNKTLYETFSVFG-NILSCK-IANDETGKSKG 172
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+GFV F++++ A AI A G L G+ + VAP
Sbjct: 173 FGFVHFENEEAAREAIDAINGMLLNGQEVYVAP 205
>gi|217074252|gb|ACJ85486.1| unknown [Medicago truncatula]
Length = 213
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K L+ N+PW+ + DI+ LF Q GTV+D+E+ + +G FVTM S + A AA++
Sbjct: 95 KKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVD 154
Query: 160 NLESYEFEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+ E GR L+V +AK KK P PP A + ++ +NL+++AR+ LR+ F
Sbjct: 155 KFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIF 211
>gi|2204091|emb|CAB05389.1| FCA delta [Arabidopsis thaliana]
Length = 533
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|320580860|gb|EFW95082.1| poly(A+) RNA-binding protein, putative [Ogataea parapolymorpha
DL-1]
Length = 405
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 16/179 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P+ +T D++ LF + G V+ ++ + S+ R+RG+ V + D A++ + +
Sbjct: 75 NLPYHTTWYDLKDLFREVGEVVRADV-VTSRGRSRGMGTVEFANKDLVQEAISKFDRTMY 133
Query: 167 EGRTL----------KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
EGR + K N + +++ PP + + +FI NL F R +DL++ F
Sbjct: 134 EGREIFVREDLPPPEKENTGREERRRNAPPPSTE---GYEVFIGNLPFSVRWQDLKDLFK 190
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF 275
S G ++ A+V D+ RS G+G V F++ + A+ AI+ F G GR + V +QF
Sbjct: 191 SCG-PIIRADV-REDHRGRSKGFGTVIFENSEDADRAIADFNGYDMDGRRIEVRLGKQF 247
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P++ +D++ LF+ G ++ ++ + R++G V + ++A A+ + Y+
Sbjct: 175 NLPFSVRWQDLKDLFKSCGPIIRADVREDHRGRSKGFGTVIFENSEDADRAIADFNGYDM 234
Query: 167 EGRTLKVNYAKIKKKNPFPPV-------------QPKPFATFNLFIANLSFEARAKDLRE 213
+GR ++V K K P P Q +P T +F NL +E DL +
Sbjct: 235 DGRRIEVRLGKQFNKEPQGPTESRNSEFVAGVVGQGEPNDT--IFADNLPWETSETDLFD 292
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F S V AE+ F D+ R AG V F+ A A++ + R L V+
Sbjct: 293 LFGSIA-SVKRAELQF-DDLNRPAGTAVVQFQELDGAIAAVNQLDNYEYGRRRLHVS 347
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
+ A N+PW ++ D+ LF +V EL NR G A V D A AA+N L+
Sbjct: 276 IFADNLPWETSETDLFDLFGSIASVKRAELQFDDLNRPAGTAVVQFQELDGAIAAVNQLD 335
Query: 163 SYEFEGRTLKVNYAK 177
+YE+ R L V++AK
Sbjct: 336 NYEYGRRRLHVSFAK 350
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+F+ NL + DL++ F G +VV A+V+ RS G G V F +K + + AIS
Sbjct: 71 IFVGNLPYHTTWYDLKDLFREVG-EVVRADVVTSRG--RSRGMGTVEFANKDLVQEAISK 127
Query: 257 FQGKLFMGRPL 267
F ++ GR +
Sbjct: 128 FDRTMYEGREI 138
>gi|2204096|emb|CAB05392.1| FCA delta [Arabidopsis thaliana]
gi|5302786|emb|CAB46035.1| FCA delta protein [Arabidopsis thaliana]
gi|7268378|emb|CAB78671.1| FCA delta protein [Arabidopsis thaliana]
Length = 533
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|186511881|ref|NP_193363.4| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658326|gb|AEE83726.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 533
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|296089011|emb|CBI38714.3| unnamed protein product [Vitis vinifera]
Length = 166
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 11/162 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA-- 176
+F+ HGTV IE+ +++ +RG +VTM S EA AA+ L+ + GR ++V ++
Sbjct: 1 MFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTD 60
Query: 177 -KIKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
+++N P++ F + + L++ NL++ + +DLR F S+ VVSA V+
Sbjct: 61 MNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHF-SQFGTVVSARVVHD 119
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
+ YGF+SF S E A+S GK F GR L V+
Sbjct: 120 RKAGKHRAYGFLSFSSAAECEAAMS-LNGKEFRGRSLVVSAG 160
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W ED+R F Q GTV+ + K ++R F++ S E AA+ +
Sbjct: 86 KLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAM-S 144
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L EF GR+L V+ A +K+
Sbjct: 145 LNGKEFRGRSLVVS-AGMKR 163
>gi|145354241|ref|XP_001421399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581636|gb|ABO99692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 288
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 15/197 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
S RL N+PW++T ED+R LF + G V +++ + R+RG V S EA AA+
Sbjct: 7 SSARLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGRQGRSRGYGLVEFNSEAEAQAAV 66
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQ---------PKPFATFNLFIANLSFEARAK 209
++ RT+ V K K + P + NL++E +
Sbjct: 67 TRMDGTPLGDRTITVREDKAPTKAAGGAKKASASVLGDAPAGGDGCRCYFGNLAWETSEE 126
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI-----SAFQGKLFMG 264
L S G +VV EV RS G+ V F + + A+ AI S QG+ +
Sbjct: 127 TLTSHCASFGVNVVQCEVARQSGG-RSKGWALVDFATPEEAQNAIEQMHNSEIQGRSIIV 185
Query: 265 RPLRVAPSRQFARLQTK 281
R R ++ AR++T+
Sbjct: 186 RVERPGAGQKSARVETR 202
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W ++ E + + G V+ E++ S R++G A V +P+EA A+ + + E
Sbjct: 118 NLAWETSEETLTSHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEAQNAIEQMHNSE 177
Query: 166 FEGRTL--KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+GR++ +V +K+ +P+ + + + NL + ++DLR+ F + +VV
Sbjct: 178 IQGRSIIVRVERPGAGQKSARVETRPENSSGLQIVVRNLPWTTTSEDLRQVF-QQVGNVV 236
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
+A + H + RS G+G V F++++ A+ AI F G RP+++ R
Sbjct: 237 NAVAVCHTDTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKLDR 286
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGS 150
E R E S ++V +N+PWT+T ED+R +F+Q G V++ H+ R++G V +
Sbjct: 200 ETRPENSSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVNAVAVCHTDTGRSKGWGTVLFET 259
Query: 151 PDEATAALNNLESYEFEGRTLKV 173
++A AA+ E E R +++
Sbjct: 260 REQAQAAIQGFNGVELEHRPMQI 282
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
E + +L N+P T T++++R +F HGTV E+ M+ K NR+R FVTM + +E
Sbjct: 64 EAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEV-MYDKYTNRSRRFGFVTMSTAEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA+ L E R +KVN + N P+P A F +++ NL+
Sbjct: 123 ANAAVEALNGTEVGDRKIKVNVTESFLPN-IDRSAPEPEALFVDSQYKVYVGNLAKTVTT 181
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
+ L+ FF SE +++SA V +S GYGFV+F S++ E A++ F +
Sbjct: 182 EVLKNFF-SEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAV 233
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDE 153
E + +L N+P T T++++R +F HGTV E+ M+ K NR+R FVTM + +E
Sbjct: 64 EAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEV-MYDKYTNRSRRFGFVTMSTAEE 122
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARA 208
A AA+ L E R +KVN + N P+P A F +++ NL+
Sbjct: 123 ANAAVEALNGTEVGDRKIKVNVTESFLPN-IDRSAPEPEALFVDSQYKVYVGNLAKTVTT 181
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
+ L+ FF SE +++SA V +S GYGFV+F S++ E A++ F +
Sbjct: 182 EVLKNFF-SEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNAV 233
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
+L N+ +++ +R++F G V D+ L M +R RG FVT+ + A A+
Sbjct: 19 VKLYIGNLDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIA 78
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPF------PPVQPKPFATFN--------LFIANLSFE 205
++ + +GRT++VN ++ + + P P P + FN L++ NLSF+
Sbjct: 79 KMDQSQLDGRTIRVNESRPRGEGPGARRSNEPGTGPGGYGAFNPQGREDVKLYVGNLSFD 138
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+ +R F E + VS + D + R G+ FV+ +K+ AETA + G G
Sbjct: 139 TNEEAVRSMF--EQYGTVSDCFLPSDRDTGRPRGFAFVTMPAKE-AETACNKVNGMELDG 195
Query: 265 RPLRV 269
R +RV
Sbjct: 196 RTVRV 200
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SM 134
+ +P A N + RE+ +L N+ + + E +R++FEQ+GTV D L S
Sbjct: 107 SNEPGTGPGGYGAFNPQGRED----VKLYVGNLSFDTNEEAVRSMFEQYGTVSDCFLPSD 162
Query: 135 HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
R RG AFVTM EA A N + E +GRT++VN A+ K + P
Sbjct: 163 RDTGRPRGFAFVTM-PAKEAETACNKVNGMELDGRTVRVNEAQPKVSSSGGGGNPPTPLI 221
Query: 195 FNL 197
FNL
Sbjct: 222 FNL 224
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 3/173 (1%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S+ L +P + + + F G V +++ + AFV A A
Sbjct: 40 EISRKVLYVGGLPKSINEDALNEKFSASGPVFSVKILNDKNKQGFNYAFVEFVDEAGAAA 99
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL FE LK+NYA + + F Q T+N+F+ +LS E + L +FF
Sbjct: 100 ALQEFNGSSFENSMLKINYAY--QSSTFNATQNSDDPTYNIFVGDLSPEVDDESLHKFF- 156
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
S + A V++ RS GYGFV+F + AETA+S GK+ GR +R
Sbjct: 157 SAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGKVLNGRAIRC 209
>gi|224066995|ref|XP_002302317.1| predicted protein [Populus trichocarpa]
gi|222844043|gb|EEE81590.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 38/44 (86%)
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR 234
P TFNLF+ANL FEA++KDL+E FI+EG DVVSAEVIF DNPR
Sbjct: 2 PGPTFNLFLANLPFEAKSKDLKELFIAEGADVVSAEVIFQDNPR 45
>gi|375152208|gb|AFA36562.1| plastid-specific 30S ribosomal protein 2, partial [Lolium perenne]
Length = 112
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L+++NL+++AR+ +L+EFF ++ VSA V+F D ++SAGYGFVSF +K+ AE+A+S
Sbjct: 2 LYVSNLAWKARSNNLKEFFAQ--YNPVSANVVFDD--KKSAGYGFVSFGTKEEAESALSE 57
Query: 257 FQGKLFMGRP--LRVAPSRQFARLQTK-EGLH-SDETSDDLNINAEEADTAD 304
+GK MGRP LR ++ + + EG+ SD+ + N+ E D D
Sbjct: 58 LEGKELMGRPVLLRWREDKEVVKADGEVEGVKVSDQPEGAVIDNSAEEDAED 109
>gi|332658328|gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 672
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 26 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 82
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 83 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 133
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 134 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 191
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 192 AIDGLNGTYTM 202
>gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii]
Length = 361
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL---------SMHSKNRNRGLAFVT 147
E SKT L+ +P T T E+IR+LF G V +L S S ++ G FV
Sbjct: 38 EDSKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVN 97
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
P++A A+N L + +T+KV+YA+ ++ NL+++ L
Sbjct: 98 YKRPEDAEKAINTLNGLRLQNKTIKVSYARPSSES---------IKGANLYLSGLPKSMS 148
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
+LR F S G +++ ++ + S G GF+ F + AE AI GK+
Sbjct: 149 EPELRSLFSSCG-SIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKV 201
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 7/173 (4%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S L N+ + T + ++ F+ G ++D+++ + K+ AFV +A+
Sbjct: 75 ETSDRVLYVGNLDKSITEDILKQYFQVAGQIVDVKVMIDKKSNYVNYAFVEYAKAHDASV 134
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL L + E +K+N A +++ +TFNLF+ +L+ + L F
Sbjct: 135 ALQTLNGIQIENNKVKINRAFQSQQSTTDD------STFNLFVGDLNIDIDDDTLSRSF- 187
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ + A V++ RS GYGFVSF ++ A+ A+ QGK GRP+R+
Sbjct: 188 KDFPSYIQAHVMWDMQTGRSRGYGFVSFADQEQAQKAMEEMQGKELNGRPIRI 240
>gi|2204089|emb|CAB05388.1| FCA gamma [Arabidopsis thaliana]
gi|57169178|gb|AAW38964.1| FCA [Arabidopsis thaliana]
Length = 747
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|156050581|ref|XP_001591252.1| hypothetical protein SS1G_07878 [Sclerotinia sclerotiorum 1980]
gi|154692278|gb|EDN92016.1| hypothetical protein SS1G_07878 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 376
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T ED++ FE GT+ D+ ++ ++ ++G A++ ATAA+ F
Sbjct: 152 NLLFDITEEDLKKEFEHFGTITDVRVTRDARGLSKGFAYIDFADVQSATAAIEEKNQTIF 211
Query: 167 EGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
EGR L VNY KI+ +N PP + LFI NL+FE DL F E +V
Sbjct: 212 EGRRLIVNYVNQTPKIRDQN--PPSKC-------LFIGNLAFEMSDADLNSLF-REVRNV 261
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ V + G+ F A A+ QGK R LRV
Sbjct: 262 IDVRVAIDRRTGQPRGFAHADFVDVDSAMKALEQLQGKEVFNRRLRV 308
>gi|334302803|sp|O04425.2|FCA_ARATH RecName: Full=Flowering time control protein FCA
gi|2244986|emb|CAB10407.1| FCA gamma protein [Arabidopsis thaliana]
gi|7268377|emb|CAB78670.1| FCA gamma protein [Arabidopsis thaliana]
Length = 747
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|156373168|ref|XP_001629405.1| predicted protein [Nematostella vectensis]
gi|156216405|gb|EDO37342.1| predicted protein [Nematostella vectensis]
Length = 817
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 4/196 (2%)
Query: 78 DPFVDSSSAAAVNTEQREEEYSKTRLV-AQNVPWTSTHEDIRALFEQHGTVLDIELSMHS 136
D S AA + EEE S R V N+ ++ T + +R F + G VLD+ + +
Sbjct: 577 DKVRSSEPAAKKPCGESEEESSDPRKVFISNLLFSITEDHLRDKFSKLGEVLDVRIVKNM 636
Query: 137 KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN 196
R++G A+V + AAL ++ + EGR + ++ K KNP P
Sbjct: 637 AGRSKGYAYVEFNNESTVQAAL-AMDREKMEGRPMFISPCVDKAKNPTTFKFPTSLDKHT 695
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF++NL F+A+ ++ E F G VV + + + GYG+V ++ + A TA+
Sbjct: 696 LFVSNLPFDAKESEIEELFSKHG--VVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLT 753
Query: 257 FQGKLFMGRPLRVAPS 272
GR + VA S
Sbjct: 754 LDKTEVKGRTISVALS 769
>gi|444316792|ref|XP_004179053.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
gi|387512093|emb|CCH59534.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
Length = 470
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 8/206 (3%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
+S++ N + E S L N+ + + ++ F+ G + ++++ + N+
Sbjct: 64 ESANVVPANAIRGGRETSDKILYVGNLDKSINEDSLKQYFQVGGPIANVKIIVDKNNKYC 123
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV +A AL L E + +K+N+A F Q TFNLFI +
Sbjct: 124 NYAFVEYLKHHDANVALQTLNGKHIEKKIVKINWA-------FQSQQSSNDDTFNLFIGD 176
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L+ + + L F + V A V++ RS GYGF SF ++ A+ A+ QGK
Sbjct: 177 LNIDVNDESLTAAF-KDFPSFVQAHVMWDMQTGRSRGYGFASFSTQNDAQLAMDQMQGKE 235
Query: 262 FMGRPLRVAPSRQFARLQTKEGLHSD 287
GRP+R+ + + Q ++ H++
Sbjct: 236 LNGRPIRINWASKRDNQQGQQQSHNN 261
>gi|2204095|emb|CAB05391.1| FCA gamma [Arabidopsis thaliana]
Length = 747
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-- 195
R+RG FVTM S +EA AA+ Y F+GR L+VN ++ P P+
Sbjct: 11 GRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGG 70
Query: 196 ---------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+++ NL++ L F +G V+ A+VI+ + RS G+GFV++ S
Sbjct: 71 GGSFVDSGNKVYVGNLAWGVDNSTLENLFSEQG-QVLDAKVIYDRDSGRSRGFGFVTYGS 129
Query: 247 KKVAETAISAFQGKLFMGRPLRVA-----PSRQF 275
+ AIS G GR +RV P R+F
Sbjct: 130 AEEVNNAISNLDGIDLDGRQIRVTVAESKPRREF 163
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
S ++ N+ W + + LF + G VLD ++ R+RG FVT GS +E A
Sbjct: 77 SGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNA 136
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPF 184
++NL+ + +GR ++V A+ K + F
Sbjct: 137 ISNLDGIDLDGRQIRVTVAESKPRREF 163
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
EV++ RS G+GFV+ S + A A+ F G F GRPLRV
Sbjct: 3 EVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRV 46
>gi|186511879|ref|NP_849543.2| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658325|gb|AEE83725.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 747
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGS 150
E+ E T+L N+P++ + + + +G+ +E L R+RG AFVTM S
Sbjct: 57 EEGAESPVNTKLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSS 116
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
++ A + NL+ E+ GRTL+VN++ K P P+ P+ + LF+ NLS+ ++
Sbjct: 117 VEDCNAVIENLDGSEYGGRTLRVNFS--DKPKPKLPLYPE--TEYKLFVGNLSWSVTSES 172
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
L + F G +V+ A V++ D S + + K A + + F
Sbjct: 173 LNQVFQEYG-NVIGARVLY-DGETGSVIWLLIGIKQSGRAPSLVIGF 217
>gi|296805985|ref|XP_002843812.1| nucleic acid-binding protein [Arthroderma otae CBS 113480]
gi|238845114|gb|EEQ34776.1| nucleic acid-binding protein [Arthroderma otae CBS 113480]
Length = 318
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K+ + N+ + T D++ ++G V+ + S+ +RG +V + +EA A+N
Sbjct: 89 KSTVYVGNILFDITAADLKEYASKYGKVVGSRIIYDSRGLSRGFGYVKFENIEEAKKAVN 148
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF--IS 217
++ EFEGR L VNYA++ K P +P T +F+ N++ + +DL E F I
Sbjct: 149 DMHLSEFEGRKLSVNYAQMDLKEETPQRTIEP--TRTVFVGNIAHQITDRDLHELFDSIP 206
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+DV A PR G+ F + A A +GK GRPLR+
Sbjct: 207 NVFDVRVAVDRRTGMPR---GFAHAEFTDVESAIAGFEALKGKAPYGRPLRL 255
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P P +++ N+ F+ A DL+E+ G VV + +I+ D+ S G+G+V
Sbjct: 79 LPPTRPSPEPKSTVYVGNILFDITAADLKEYASKYG-KVVGSRIIY-DSRGLSRGFGYVK 136
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
F++ + A+ A++ F GR L V +A++ KE
Sbjct: 137 FENIEEAKKAVNDMHLSEFEGRKLSV----NYAQMDLKE 171
>gi|169626491|ref|XP_001806645.1| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
gi|160706106|gb|EAT76075.2| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
Length = 321
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 13/178 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ + T E ++ +F + G V +++ ++ +RG +V S D+A A++NL+
Sbjct: 131 LYIGNLYYEVTTEQLQKVFSRFGEVASVKIVYDNRGMSRGFGYVEFKSIDDAQTAIDNLD 190
Query: 163 SYEFEGRTLKVNYAKIKK-----KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF-- 215
FEGR L V Y + K K FPP + LFI N+SFE KDL + F
Sbjct: 191 MQVFEGRNLVVQYHRAKSDSDRPKREFPPAN---LPSKTLFIGNMSFEMSDKDLNDLFRD 247
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
I DV A PR A F+ S A+ +SA K GR LRV SR
Sbjct: 248 IRNVNDVRVAIDRRTGQPRGFAHADFLDVASATKAKEILSA---KTIYGRELRVDFSR 302
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC 10573]
Length = 231
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W + ++ FE G V+ + M + ++RG +V S +A AL +
Sbjct: 5 LFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKALQDF 64
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF------NLFIANLSFEARAKDLREFF 215
+ E +GR + ++ + K + P + K F LFI NLSF A L E F
Sbjct: 65 QGKEIDGRPINLDLSTSKPQTPAKNDRAKKFGDVVSAPSDTLFIGNLSFNATRDKLFEAF 124
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G +V+S + H + ++ G+G+V + S + A+ A+ A G+ GRP R+
Sbjct: 125 GQYG-EVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEALNGEYIEGRPCRL 177
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + +T + + F Q+G V+ + H + +G +V GS +EA AAL L
Sbjct: 106 LFIGNLSFNATRDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEAL 165
Query: 162 ESYEFEGRTLKVNYA 176
EGR +++Y+
Sbjct: 166 NGEYIEGRPCRLDYS 180
>gi|50289655|ref|XP_447259.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526568|emb|CAG60192.1| unnamed protein product [Candida glabrata]
Length = 416
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 16/212 (7%)
Query: 62 PKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALF 121
P++VS V +A+ Q+ D S + + E S L N+ + T + ++ F
Sbjct: 20 PEEVSQEVEGDNAS-QENDDDKPSVVPASATKGGRETSDRVLYVGNLDKSITEDLLKQYF 78
Query: 122 EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+ G + ++++ KN AFV +A AL L + E +TLK+N+A ++
Sbjct: 79 QAGGPIQNVKIIEDMKNEYVNYAFVEYIRSHDANVALQTLNGVQLENKTLKINWAFETQQ 138
Query: 182 NPFPPVQPKPFATFNLFIANLSF----EARAKDLREFFISEGWDVVSAEVIFHDNPRRSA 237
+ TFNLF+ +L+ E A REF + A V++ RS
Sbjct: 139 ------AAENDDTFNLFVGDLNVDVDDETLAGTFREFPT-----FIQAHVMWDMQTGRSR 187
Query: 238 GYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
GYGFVSF +++ A+ A+ A QGK GR +R+
Sbjct: 188 GYGFVSFSNQEEAQKAMDAMQGKDLSGRQIRI 219
>gi|363750866|ref|XP_003645650.1| hypothetical protein Ecym_3344 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889284|gb|AET38833.1| Hypothetical protein Ecym_3344 [Eremothecium cymbalariae
DBVPG#7215]
Length = 421
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 8/188 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D S V + E S L N+ + ++ F+ G + ++++ + N
Sbjct: 44 DQSQVTPVLATKGGRETSDRILYVGNLDKAINEDTLKQYFQVGGPIANVKVLVDKNNEEA 103
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV P +A A L+ + EG +K+N+A F TFNLF+ +
Sbjct: 104 NYAFVEYHQPHDANVAFQTLDGKQIEGNVIKINWA-------FQSQHVSSDDTFNLFVGD 156
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L+ + + L F E + A V++ RS GYGFVSF + VA+ A+ + QG +
Sbjct: 157 LNVDVDDETLTGTF-KEFPSFIQAHVMWDMLSGRSRGYGFVSFSEQDVAQQAMESKQGFI 215
Query: 262 FMGRPLRV 269
GR +R+
Sbjct: 216 LNGRAIRI 223
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
R+ N+P T T+E + L E+HG V + +S R+R F TM S ++A A + L
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVMYDKYS-GRSRRFGFATMKSVEDANAVVEKL 135
Query: 162 E-------SYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFA----TFNLFIANLSFEARA 208
S EGR +KVN + I +Q + A + +++ NL+ +
Sbjct: 136 NGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLA-KTVT 194
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
K++ E SE VVSA+V +S G+GFV+F S++ E AI A L G+ +R
Sbjct: 195 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIR 254
>gi|42407940|dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa Japonica Group]
Length = 131
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEA 206
M + +EA A+ L Y+ GR L VN A + P P+ FA F ++ NL ++
Sbjct: 1 MSTIEEADKAIEMLNRYDINGRLLNVNRAAPRGSRVERP--PRQFAPAFRAYVGNLPWQV 58
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266
L + F SE +VV+A V++ RS G+GFVS SK+ + AISA G+ GRP
Sbjct: 59 DDSRLLQLF-SEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRP 117
Query: 267 LRV 269
LRV
Sbjct: 118 LRV 120
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R N+PW + LF +HG V++ + + R+RG FV+M S +E A++
Sbjct: 48 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 107
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ E +GR L+VN A + + F
Sbjct: 108 LDGQELDGRPLRVNVAAERPQRGF 131
>gi|358248652|ref|NP_001240173.1| uncharacterized protein LOC100814693 [Glycine max]
gi|255644669|gb|ACU22837.1| unknown [Glycine max]
Length = 411
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 9/198 (4%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAA 157
+ T+ +P+ ST +DIR+ FE GT+ +++ ++ + RG+A +T + A A
Sbjct: 164 TNTKAYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEAAAKRA 223
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFI 216
L L+ + G LK+ K + N P+ +N +++ NLS++ ++LR+FF
Sbjct: 224 L-ALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRIYVGNLSWDITEEELRKFF- 281
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
G ++ S GY V F + +TA++ Q LF GRP+R++ +
Sbjct: 282 -NGCEITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALALDQNVLF-GRPVRISCA---V 336
Query: 277 RLQTKEGLHSDETSDDLN 294
L+ K G H+ T + N
Sbjct: 337 PLKKKTGTHTSSTVNGAN 354
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ ++ NV +T E+I LFE++GTV++ + AFV M +EAT A+
Sbjct: 7 RMKIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQ-------YAFVHMRGAEEATKAVE 59
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+L E G+ + V +K P+P T+ +F+ N+S ++R+ F G
Sbjct: 60 DLNGRELNGKKMLVELSK-----------PRPQNTWKIFVGNVSSSCEGSEIRKIFEEYG 108
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
VV +++ Y FV + A AI A GK G+ + V S + R
Sbjct: 109 R-VVECDIV--------KDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMSHKVQRSG 159
Query: 280 TKEG-LHSDETSDD 292
T G H +DD
Sbjct: 160 TSNGSSHGRRRTDD 173
>gi|374725008|gb|EHR77088.1| putative RNA-binding protein [uncultured marine group II
euryarchaeote]
Length = 477
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 3/173 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
RL +P E++RALF +HG + D + NRG FVT +A AA+
Sbjct: 264 CRLFVGGLPREVGTEELRALFAEHGDMTDCIVLTDDNGVNRGFGFVTYSEKAQADAAIAK 323
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L+ ++ GR + V A K + P L++ NL F+A L+ F +G
Sbjct: 324 LDGHKVNGRKIGVRDADSDDKKSKRGKRKDPEG-LKLYVGNLPFKATEDQLKALF--DGV 380
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
V+ V+ DN + G+ F K + + G +GR ++V S+
Sbjct: 381 ATVNELVMATDNAGKPKGFAFAFVKETDQGDAIVEKLNGTELLGRKIKVDVSQ 433
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 12/184 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N T T ED+ LF +GT+ + + ++R FV SPD A AA+
Sbjct: 184 TNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVER 243
Query: 161 LESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKD 210
L + + L V A+ K K F + + + + NL++ NL +
Sbjct: 244 LNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDK 303
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L+E F SE + S +V+ N RS GYGFV+F + + A A+ GK+ RPL VA
Sbjct: 304 LKELF-SEFGTITSCKVMLEPN-GRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVA 361
Query: 271 PSRQ 274
+++
Sbjct: 362 VAQR 365
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 120 LFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
LF + G + I + NR+ G A+V +P +A A+ +L G++++V ++
Sbjct: 25 LFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHLNFTPLNGKSIRVMFS--- 81
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
N P ++ +A N+FI NL K L + F + G+ V+S++V D+ +S GY
Sbjct: 82 --NRDPSIRKSGYA--NVFIKNLDISIDNKTLHDTFAAFGF-VLSSKVAV-DSIGQSKGY 135
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F +++ A+ AI G L + + V
Sbjct: 136 GFVQFDNEESAQNAIKELNGMLINDKKVYVG 166
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
++ E+Y T L +N+ + + ++ LF + GT+ ++ + R++G FV +P
Sbjct: 280 RKYEKYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPR 339
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKK 181
A AL+ + R L V A+ K++
Sbjct: 340 NANRALHEMNGKMIGRRPLYVAVAQRKEE 368
>gi|464252|sp|P20397.3|NUCL_XENLA RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|64937|emb|CAA44805.1| nucleolin [Xenopus laevis]
Length = 651
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E S+T L +N+P+++T E+++ +FE DI + N+G+A+V +
Sbjct: 317 ENKKERDSRT-LFVKNIPYSTTVEELQEIFEN---AKDIRIPTGKDGSNKGIAYVEFSNE 372
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
DEA AL + E EGR++ V++ K +N P+ + L + NLS+ A L
Sbjct: 373 DEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKV-LVVNNLSYSATEDSL 431
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
RE F + + N R+ G+ F+ F S + A+ A+ + GR +R+
Sbjct: 432 REVFEK------ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRL 483
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
LV N+ +++T + +R +FE+ T + I ++ R +G AF+ S ++A A+++
Sbjct: 417 LVVNNLSYSATEDSLREVFEKA-TSIRIP---QNQGRAKGFAFIEFSSAEDAKDAMDSCN 472
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ E EGR++++ +++ T LF+ LS + + L+E F
Sbjct: 473 NTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT--LFVRGLSEDTTEETLKEAFDGS---- 526
Query: 223 VSAEVIFHDNPRRSAGYGFVSF 244
V+A ++ + S G+GFV F
Sbjct: 527 VNARIVTDRDTGASKGFGFVDF 548
>gi|296083224|emb|CBI22860.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T EDIR LFE+HG VL++ L + + +G F+ + +EA A+
Sbjct: 42 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 101
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ + LF+ +L+ +A K+++E F
Sbjct: 102 LHNQYTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQATEKEVKEIFSP 154
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V + D ++S G GFV F + +A AI+A G M
Sbjct: 155 YGQ--VEDVYLMRDELKQSRGCGFVKFSHRDMAMAAINALNGIYTM 198
>gi|449518978|ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 284
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 28/260 (10%)
Query: 41 HYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFV--DSSSAAAVNTEQREEEY 98
H++Y +S H FP+ + + + SA T++ V D S +++ ++ ++
Sbjct: 42 HFDYTKLVSLRHNHGERFPV----LFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLA 97
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAA 157
L N+P + ++ +F+ +GTVL E+S + + ++G +VTMGS + A +
Sbjct: 98 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 157
Query: 158 LNNLESYEFEGRTLKVNYA---KIKKKN-----PFPPVQPKPFATFNLFIANLSFEARAK 209
+ L+ + GR ++V +A KK+N P + + +++ NLS++ +
Sbjct: 158 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 217
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
DLR F G VVSA+V+ +S YGF+SF S + +IS G + R L V
Sbjct: 218 DLRNLFSRFG-TVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASIS-LDGTEYNNRKLVV 275
Query: 270 APSRQFARLQTKEGLHSDET 289
+EGL E+
Sbjct: 276 -----------REGLERSES 284
>gi|359477208|ref|XP_002279515.2| PREDICTED: flowering time control protein FCA [Vitis vinifera]
Length = 785
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T EDIR LFE+HG VL++ L + + +G F+ + +EA A+
Sbjct: 119 KLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRA 178
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + Y G ++V YA +++ + LF+ +L+ +A K+++E F
Sbjct: 179 LHNQYTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQATEKEVKEIFSP 231
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V + D ++S G GFV F + +A AI+A G M
Sbjct: 232 YGQ--VEDVYLMRDELKQSRGCGFVKFSHRDMAMAAINALNGIYTM 275
>gi|357139508|ref|XP_003571323.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 288
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L N+P +D+ LF+ +GTVL +E+S + +RG FVTM S A A+N L
Sbjct: 103 LFVCNLPRRCGVDDLLHLFQPYGTVLSVEVSRDPETGISRGCGFVTMRSLAAARTAMNAL 162
Query: 162 ESYEFEGRTLKVNYAK---IKKKNP----FPPVQPKPFAT-FNLFIANLSFEARAKDLRE 213
+ ++ +GR + V A ++NP P++ F + + +++ NL++ + + LRE
Sbjct: 163 DGFDLDGREMFVKLASHVVSNRRNPSLSHTAPMKDHIFESPYKIYVGNLAWSVQPQHLRE 222
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G ++VS ++ R+ YGF+SF S + + A+ F GR + V
Sbjct: 223 LFTQCG-NIVSTRLLTDRKGARNRVYGFLSFSSPEELDAALK-LNNTNFHGRDIIV 276
>gi|32482067|gb|AAP84390.1| FCA protein [Triticum aestivum]
Length = 735
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 118 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 177
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ + LF+A+L+ +A AK++ E F
Sbjct: 178 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEYKLFVASLNKQATAKEIEEIFA 230
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|66821129|ref|XP_644081.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
gi|60472201|gb|EAL70154.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
Length = 904
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+VN ++ E E +T + +++P+ ED+ LF ++G VL ++ + K + G FV
Sbjct: 96 SVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVR 155
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
SP E+ AA+ L+ Y+++ + L + N + + K + + NLFI L ++
Sbjct: 156 FSSPQESAAAIEELDGYQYQNKKLLCRLS-----NLYTNLNSK-YPSNNLFIKPLPYDVT 209
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
LR+ F G ++ +V+ D+ +S GFV F S+ A AI A G
Sbjct: 210 DDQLRKLFEPFG-KIIECKVML-DHNGQSKFAGFVRFSSELDASKAIDAMNG 259
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+F+ +L +E +DL F G V+S++V+ D S GYGFV F S + + AI
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYG-KVLSSKVMI-DPKGNSYGYGFVRFSSPQESAAAIE 167
Query: 256 AFQGKLFMGRPLRVAPSRQFARLQTK 281
G + + L S + L +K
Sbjct: 168 ELDGYQYQNKKLLCRLSNLYTNLNSK 193
>gi|169646279|ref|NP_001108616.1| RNA binding motif protein 14 [Danio rerio]
gi|194332550|ref|NP_001123764.1| uncharacterized protein LOC100170513 [Xenopus (Silurana)
tropicalis]
gi|63100727|gb|AAH95368.1| Zgc:110682 [Danio rerio]
gi|163915521|gb|AAI57377.1| Zgc:110682 protein [Danio rerio]
gi|189441765|gb|AAI67521.1| LOC100170513 protein [Xenopus (Silurana) tropicalis]
Length = 471
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
++ S +L N+ +T +D+ ALF G V+ I + R AFV + A
Sbjct: 2 DDSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVL-------RQFAFVHLQGEGAAD 54
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+A+ +L E+ GR+L V +K + P + +F+ NL +DL + F
Sbjct: 55 SAIRDLNGREYRGRSLVVEESKGR-----------PLNSTKVFVGNLCASCSVEDLYDLF 103
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G + +V P GY FV + K+ AE AI G FMGRPL V
Sbjct: 104 SPYGKVLDCDKV--KTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAV 155
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E + + T++ N+ + + ED+ LF +G VLD + + G AFV M
Sbjct: 71 VVEESKGRPLNSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTGYAFVYM 130
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
++A A+ L F GR L V +K+++
Sbjct: 131 EHKEDAEQAIEGLHGTTFMGRPLAVELSKVQQ 162
>gi|312377573|gb|EFR24379.1| hypothetical protein AND_11086 [Anopheles darlingi]
Length = 405
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
+++ K +L + W +THE+++ F ++G V+D + + + R+RG FVT P+
Sbjct: 7 DDHEKGKLFVGGLSWETTHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENV 66
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
AL N + +GRT+ K NP +PK + +F+ L DLR
Sbjct: 67 DRALEN-GPHTLDGRTIDP-----KPCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRS 120
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G +V+ +++ ++S G+GF+SF+++ E A +
Sbjct: 121 FFCRYG-NVMEVVIMYDQEKKKSRGFGFLSFENEVAVERATT 161
>gi|449445537|ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 286
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 28/260 (10%)
Query: 41 HYNYFFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFV--DSSSAAAVNTEQREEEY 98
H++Y +S H FP+ + + + SA T++ V D S +++ ++ ++
Sbjct: 44 HFDYTKLVSLRHNHGERFPV----LFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLA 99
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAA 157
L N+P + ++ +F+ +GTVL E+S + + ++G +VTMGS + A +
Sbjct: 100 RPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVS 159
Query: 158 LNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFAT------FNLFIANLSFEARAK 209
+ L+ + GR ++V +A KK + P + +++ NLS++ +
Sbjct: 160 ITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPG 219
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
DLR F G VVSA+V+ +S YGF+SF S + +IS G + R L V
Sbjct: 220 DLRNLFSRFG-TVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASIS-LDGTEYNNRKLVV 277
Query: 270 APSRQFARLQTKEGLHSDET 289
+EGL E+
Sbjct: 278 -----------REGLERSES 286
>gi|255726450|ref|XP_002548151.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134075|gb|EER33630.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 472
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 90/197 (45%), Gaps = 5/197 (2%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
++T P +SS A TE E S T L N+P +++ E ++ LF G +
Sbjct: 56 SSTSTPPEESSLTPASATE-GGREISNTILYVGNLPKSASEEMVKDLFSVGGNPIKTIKL 114
Query: 134 MHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ KN+ AF+ S D A ALN L + +KVN+A +P
Sbjct: 115 LNDKNKAGFNYAFIEYDSNDTADMALNTLNGRVIDESEIKVNWAYQSAAIASTLNSEEPL 174
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
FN+F+ +LS E + LR F G + A V++ RS GYGFV+F + AE
Sbjct: 175 --FNIFVGDLSPEVNDEGLRNAFSKFG-SLKQAHVMWDMQTSRSRGYGFVTFSEQADAEL 231
Query: 253 AISAFQGKLFMGRPLRV 269
A+ G+ GR +R
Sbjct: 232 ALQTMNGEWLGGRAIRC 248
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T EDIR LFE+HG VL++ L + + +G F+ + +EA A+
Sbjct: 102 AKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIR 161
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +++ V+ + LF+ +L+ +A K+++E F
Sbjct: 162 ALHNQYTLPGGVGPIEVRYADGERER-LGAVE------YKLFVGSLNKQATEKEVKEIFS 214
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V + D ++S G GFV+F + +A AI+A G M
Sbjct: 215 PYGQ--VEDVYLMRDELKQSRGCGFVNFSHRDMAMAAINALNGIYTM 259
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 28/192 (14%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ NV +T E+I LFE++GTV++ + AFV M +EAT A+ +L
Sbjct: 2 KIFVGNVDDRTTQEEITELFERYGTVVNCAVMKQ-------YAFVHMRGAEEATKAVEDL 54
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
E G+ + V +K P+P T+ +F+ N+S ++R+ F G
Sbjct: 55 NGRELNGKKMLVELSK-----------PRPQNTWKIFVGNVSSSCEGSEIRKIFEEYGR- 102
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ Y FV + A AI A GK G+ + V S + R T
Sbjct: 103 VVECDIV--------KDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMSHKVQRSGTS 154
Query: 282 EG-LHSDETSDD 292
G H +DD
Sbjct: 155 NGSSHGRRRTDD 166
>gi|393213816|gb|EJC99311.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 258
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 52/257 (20%)
Query: 57 TFPITPKKVS----PFVFHFSATTQDPFVDSSSAAAVNTEQREEEY-------------- 98
T P +P VS P H S + V S++ A+ +++ E
Sbjct: 3 TLPTSPNTVSLSPTPTSGHTSPGSPSASVTSTAPTALPSDEEVEAVIKQATSTIPTPDGR 62
Query: 99 ------SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
++T+L A N+P+ +D++ LF + GTVL ++S+ NR+RG V + S +
Sbjct: 63 PPPGKDTRTQLFAGNLPYRVRWQDLKDLFRRAGTVLRADVSLSPDNRSRGYGTVLLASAE 122
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIK-------KKNP--FPPVQPKP------------ 191
+A A++ Y ++GR L+V ++ NP P P P
Sbjct: 123 DAGRAVDMFNGYNWQGRVLEVRLDRLGAVPGADMDANPAAIIPGAPLPGLPIGVNINGLN 182
Query: 192 -----FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
A+ L +L F + +DL++ F G ++ A+V + RS G+G V++ +
Sbjct: 183 ASLGGIASVALNGVHLPFHCQWQDLKDLFRQAG-TILRADVSLGPD-GRSRGFGTVTYAN 240
Query: 247 KKVAETAISAFQGKLFM 263
+ AE A++ F G +
Sbjct: 241 EIDAERAVAMFNGYALL 257
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 183 PFPPVQPKPF--ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV-IFHDNPRRSAGY 239
P P +P P LF NL + R +DL++ F G V+ A+V + DN RS GY
Sbjct: 57 PTPDGRPPPGKDTRTQLFAGNLPYRVRWQDLKDLFRRAG-TVLRADVSLSPDN--RSRGY 113
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSD 287
G V S + A A+ F G + GR L V + RL G D
Sbjct: 114 GTVLLASAEDAGRAVDMFNGYNWQGRVLEV----RLDRLGAVPGADMD 157
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + ED++ LF +G + I L ++ +++G FV + A A+
Sbjct: 233 TNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEE 292
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + + + NLFI NL ++ L
Sbjct: 293 LNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKL 352
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA V+ D +S G+GFV F S + A AI+ ++F G+PL VA
Sbjct: 353 EEEFKPFGT-ITSARVMV-DETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVA 409
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ T E + F+ GT+ + + +++G FV SP+EAT
Sbjct: 332 KYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATK 391
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + F G+ L V A+ K
Sbjct: 392 AITEMNQRMFFGKPLYVALAQRK 414
>gi|403342322|gb|EJY70479.1| hypothetical protein OXYTRI_08772 [Oxytricha trifallax]
Length = 471
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + N+P+T+ E ++A FE GT++++ + M K R +G AF+ + EA A+
Sbjct: 186 TEIFVGNIPFTTDAETLKAKFEAIGTIVNVSIPMSGK-RMKGYAFIKFSTRAEAEKAVKK 244
Query: 161 LESYEFEGRTLKVNYA-------KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
L ++F+GR LKVN++ + KK + + + +FI NLS+ +++R+
Sbjct: 245 LNDFDFDGRQLKVNFSSGKEAEKREKKTGDENGEKKEQTKSSTVFIGNLSYSTNEQNIRK 304
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
G ++ + ++ + G+ V F+ + AE A+ F G GR ++V S
Sbjct: 305 LLKDCG-EIKGVRIALGEDGKMK-GFAHVEFEDAESAEKAMK-FNGADLDGRNIKVDISE 361
Query: 274 QF 275
+
Sbjct: 362 KL 363
>gi|32482127|gb|AAP84414.1| FCA protein [Triticum aestivum]
Length = 740
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE 153
+ + S +L+ +VP T+ +D+R LFE HG VL++ L K +G FV + +E
Sbjct: 118 DNKSSYVKLIVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEE 177
Query: 154 ---ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
A AL+N + ++V Y +K+ LF+A+L+ +A AK+
Sbjct: 178 TESAIRALHNQCTIPGAMGPVQVRYTDGEKER-------HGSIEHKLFVASLNKQATAKE 230
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
+ E F G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 IEEIFAPFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 281
>gi|32482392|gb|AAP84385.1| FCA protein [Triticum aestivum]
Length = 738
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+ +D R LFE HG VL++ L K +G FV + +EA A+
Sbjct: 123 KLFVGSVPRTANEDDARPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRT 182
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + G ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 183 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNRQATAKEIEEIFAP 235
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
G V I D R+S G GFV F SK+ A A+++ G MG
Sbjct: 236 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMG 280
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 102/205 (49%), Gaps = 17/205 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R+ S + + +N+ ++T ED++++FE+HG + + + +++ FV
Sbjct: 198 QERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNF 257
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPV--QPKPFATFNLFIA 200
+ D+A A+ L +F+ G+ K + +++ K F + + NL+I
Sbjct: 258 ENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAVNLYIK 317
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + L+E F G +++ + HD S G GFV+F + + A A++ GK
Sbjct: 318 NLDDSVNDEKLKELFSDFG--TITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGK 375
Query: 261 LFMGRPLRVAPSR----QFARLQTK 281
+ + +PL VAP++ + ARLQ +
Sbjct: 376 MVVSKPLYVAPAQRKEERRARLQAQ 400
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 13/187 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
++ T L ++ + T + LF Q G V+ + + S R+ G +V +P +A
Sbjct: 27 QFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 86
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
AL+ L + L++ Y+ P ++ A N+FI NL K L + F
Sbjct: 87 RALDVLNFTPLNNKPLRIMYSHRD-----PSIRKSGMA--NIFIKNLDKTIDHKALHDTF 139
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF 275
S G +++S +V D +S GYGFV F S++ A+ AI G L + + V F
Sbjct: 140 SSFG-NILSCKVA-TDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVG---NF 194
Query: 276 ARLQTKE 282
R Q ++
Sbjct: 195 LRKQERD 201
>gi|295665468|ref|XP_002793285.1| nucleic acid-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278199|gb|EEH33765.1| nucleic acid-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 273
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T +D++ + G +L + + ++ +RG A+V S D A AA+ + +
Sbjct: 89 NLFFEVTADDLKRDMSKFGNILAVRIVYDNRGMSRGFAYVQFDSVDAAEAAIAEMNMTIY 148
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + VNY+ NP P +P T LFI NLSFE ++L E F + +V
Sbjct: 149 EGRRVVVNYSSRGSANPTPTRSNEP--TRTLFIGNLSFEMTDRELNELF-KDIKNVTDVR 205
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V + G+ F + A+ A + K GRPLR+
Sbjct: 206 VSVDRRTGQPRGFAHADFLDVESAQAAFEILKDKAPYGRPLRL 248
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 181 KNPFPPVQPKPFATFN--LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+N P +P P N ++I NL FE A DL+ +S+ ++++ +++ DN S G
Sbjct: 67 RNDVPISRPAPDVRPNETIYIGNLFFEVTADDLKR-DMSKFGNILAVRIVY-DNRGMSRG 124
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ +V F S AE AI+ ++ GR + V
Sbjct: 125 FAYVQFDSVDAAEAAIAEMNMTIYEGRRVVV 155
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T E+ LFE+ G + L + RG FV S + A A++
Sbjct: 260 TNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDE 319
Query: 161 LESYEFEGRTLKVNYAKI---------KKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
+ YEF G+ L V A+ K+ + + NLFI NLS E L
Sbjct: 320 MNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLL 379
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ F + G + SA+V+ +N +S G+GFV + S + A AI+ ++ G+PL VA
Sbjct: 380 KTEFSAFGT-ITSAKVMTDEN-GKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVA 436
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F GT+L ++++ ++G FV S D A AA+ ++ + +
Sbjct: 179 DNKALHDTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVY 238
Query: 173 VNY--AKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
V + ++ +++ F ++ A F N++I N+ E ++ F E + +++ +
Sbjct: 239 VGHHVSRRDRQSKFEAMK----ANFTNVYIKNIDPEVTDEEFSGLF--EKFGAITSFSLV 292
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
D + G+GFV+F+S + A+ A+ F G+ L V +++
Sbjct: 293 KDESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGKKLYVGRAQK 337
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R G A+V + D+ AL L +GR ++ ++
Sbjct: 98 IFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEELNYSLIKGRACRIMWS-- 155
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++P + T N+FI NL K L + F + G ++S +V D S G
Sbjct: 156 -QRDP----SLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGT-ILSCKVAL-DEYGNSKG 208
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
YGFV F S A AI G L + + V
Sbjct: 209 YGFVHFASIDSANAAIEHVNGMLLNDKKVYVG 240
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ ++ E+++ LF GTV L ++ ++RG AFV + A ++ +
Sbjct: 241 TNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIES 300
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFA---TFNLFIANLSFEARAKDL 211
L +++G+ L V A+ K K + + + NLF+ NL + L
Sbjct: 301 LNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKL 360
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F S G +S+ + D +S G+GFVSF S + A AIS + G+PL VA
Sbjct: 361 KEEFQSFG--TISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVA 417
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 94 REEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
R E+ +K++ L +N+ + E ++ F+ GT+ +++ + +++G FV+ S
Sbjct: 334 RIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSS 393
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIK 179
P+EA+ A++ + + G+ L V A+ K
Sbjct: 394 PEEASRAISEMNQHMLAGKPLYVALAQRK 422
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK---IKKKNPFPPVQPKPFATF 195
R+ G A+V + + A++ L +G+ +++ +++ K++N
Sbjct: 99 RSLGYAYVNYHNVKDGEKAIDELNYSVVKGQPIRIMWSQRDPAKRRN----------GEG 148
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+FI NL K L + F + G ++S +V DN +S G+GFV F+S + A+ AI
Sbjct: 149 NVFIKNLHPAIDNKALHDTFSAFGR-ILSCKVA-TDNFGQSKGFGFVHFESPEAAQAAIE 206
Query: 256 AFQGKLFMGRPLRVAP 271
G L + V P
Sbjct: 207 NVNGMLLNNNEVYVGP 222
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 51/212 (24%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+P+ +D++ LF Q G+V+ ++ M+ + R+RG+ V M S EA A+ L
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQML 239
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN------------------------- 196
+ +F GRTL+V + F + KP++T
Sbjct: 240 HNTDFMGRTLEVRLDR------FAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANT 293
Query: 197 ------------------LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++ NL + ++L + F G V+ A + + RS G
Sbjct: 294 QVEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIG-SVIRARIAYEPT-GRSKG 351
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+G V F+++ A ++I G + GRPL+++
Sbjct: 352 FGVVQFENENDAASSIEKLNGYRYGGRPLQLS 383
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 13/189 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
R+ N+ + +++ Q G VL+ E+ ++G A + + +EA A+ L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---------LFIANLSFEARAKDLR 212
+ +F GR + + + ++ F P A+ N LF+ NL + R +DL+
Sbjct: 138 SNQKFMGRLVYIREDR-EQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLK 196
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
+ F G V+ A++ + RS G G V S K A AI FMGR L V
Sbjct: 197 DLFRQAG-SVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLD 254
Query: 273 RQFARLQTK 281
R FA ++K
Sbjct: 255 R-FAHHKSK 262
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+PW ++ ++ LF G+V+ ++ R++G V + ++A +++ L Y +
Sbjct: 316 NLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRY 375
Query: 167 EGRTLKVNYAKIKKKNPFPPV 187
GR L+++YA P P V
Sbjct: 376 GGRPLQLSYAHY--ATPLPAV 394
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ +FE++G L +++ S ++RG FV+ ++A A+ + E G+T+ V
Sbjct: 205 EQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + D A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F E + + + D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGDEMEDEQLKEMF--EKYGKTLSVKVMTD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ +S G+GFVSF+ + A A+ G G+ + V
Sbjct: 226 SSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVG 264
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 13/162 (8%)
Query: 112 STHED-IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
S ED I LF Q G+V ++ +H N AFV +A+ AL + R
Sbjct: 52 SVSEDFIATLFNQIGSVTKTKV-IHD-GANDPYAFVEFSDHGQASQALQTMNKRLLHDRE 109
Query: 171 LKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
+KVN+A P QP T F++F+ +LS E + LRE FI G DV A+V
Sbjct: 110 MKVNWA------VEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFIPFG-DVSDAKV 162
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
I N +S GYGFVS+ ++ AE AI G+ R +R
Sbjct: 163 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 204
>gi|410083501|ref|XP_003959328.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
gi|372465919|emb|CCF60193.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
Length = 365
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S L N+ + + ++ F+ G ++D+++ + KN + AF+ + +A
Sbjct: 27 ETSDKVLYIGNLDKSINEDALKQYFQVAGQIVDVKVMVDKKNNHVNYAFIEYSTNHDANV 86
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL L + E + +K+N+A + N +FNLFI +L+ L F
Sbjct: 87 ALQTLNGIQIENKNIKINWAFQSQTN------LNDDTSFNLFIGDLNVNVDDTTLANAFK 140
Query: 217 S-EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
S G+ + A V++ RS GYGFVSF + + A+ A+ QG GR +R+
Sbjct: 141 SCPGF--LQAHVMWDMQTSRSRGYGFVSFDTHENAQAAMDQMQGHEINGRAIRI 192
>gi|213625217|gb|AAI70091.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E ++E S+T L +N+P++++ E+++ +FE DI + + N+G+A+V
Sbjct: 365 NAENKKERDSRT-LFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFS 420
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ EA AL + E EGR+L V++ K +N P + L + NLS+ A
Sbjct: 421 TEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV-LVVNNLSYSATED 479
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LRE F + + N R+ G+ FV F S + A+ A+ + GR +R+
Sbjct: 480 SLREVFEK------ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 533
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ R ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 443 FVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRIP---QNQG 498
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATF 195
R +G AFV S ++A A+++ + E EGR++++ ++ + VQ K
Sbjct: 499 RAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK----- 553
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ LS + + L+E F ++A ++ + S G+GFV F S + A+ A
Sbjct: 554 TLFVRGLSEDTTEETLKEAFDGS----INARIVTDRDTGASKGFGFVDFSSAEDAKAARE 609
Query: 256 AFQ 258
A +
Sbjct: 610 AME 612
>gi|32482116|gb|AAP84410.1| FCA protein [Triticum aestivum]
Length = 707
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 102 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 161
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 162 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 214
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 215 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 259
>gi|148226518|ref|NP_001081557.1| nucleolin [Xenopus laevis]
gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis]
Length = 705
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E ++E S+T L +N+P++++ E+++ +FE DI + + N+G+A+V
Sbjct: 366 NAENKKERDSRT-LFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFS 421
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ EA AL + E EGR+L V++ K +N P + L + NLS+ A
Sbjct: 422 TEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV-LVVNNLSYSATED 480
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LRE F + + N R+ G+ FV F S + A+ A+ + GR +R+
Sbjct: 481 SLREVFEK------ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 534
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ R ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 444 FVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRIP---QNQG 499
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATF 195
R +G AFV S ++A A+++ + E EGR++++ ++ + VQ K
Sbjct: 500 RAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK----- 554
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ LS + + L+E F ++A ++ + S G+GFV F S + A+ A
Sbjct: 555 TLFVRGLSEDTTEETLKEAFDGS----INARIVTDRDTGASKGFGFVDFSSAEDAKAARE 610
Query: 256 AFQ 258
A +
Sbjct: 611 AME 613
>gi|32482081|gb|AAP84396.1| FCA protein [Triticum aestivum]
Length = 719
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 116 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 175
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 176 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 228
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 229 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 273
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 13/190 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E+ ALF + G V + + R+RG FV + +EA A++N
Sbjct: 227 TNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDN 286
Query: 161 LESYEFEGRTLKVNYAK--------IKKKNPFPPVQP-KPFATFNLFIANLSFEARAKDL 211
L +F GR L V+ A+ ++K + ++ + NL++ NL + + L
Sbjct: 287 LNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKL 346
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV-- 269
R F E + +++ + D+ S G+GFV + S + A A++ K+ +PL V
Sbjct: 347 RAEF--EPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSH 404
Query: 270 APSRQFARLQ 279
A R+ R Q
Sbjct: 405 AQRREVRRQQ 414
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G VL +++ ++G FV + + A A+ N+ + + V + I +
Sbjct: 154 FAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGH-HISR 212
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + NL+I N+ E ++ F +G V++ VI D RS G+G
Sbjct: 213 KERQSKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQGN--VTSSVIQRDEEGRSRGFG 270
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
FV++++ + A+ A+ K F GR L V+ +++ A
Sbjct: 271 FVNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQKKA 306
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E +RA FE GT+ ++ K ++G FV SP+EA+
Sbjct: 326 KYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASK 385
Query: 157 ALNNLESYEFEGRTLKVNYAK 177
A+ + + + L V++A+
Sbjct: 386 AVAEMNNKMIGSKPLYVSHAQ 406
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V+ + RE ++ + T + +N+ + E++R LFE +G + + L ++ +++G
Sbjct: 214 VSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGF 273
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF-- 195
FV S + A A+ L + G+ L V A+ K+ K + + + + +
Sbjct: 274 GFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQG 333
Query: 196 -NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
NLF+ NL + L E F G + SA V+ D +S G+GFV F S + A AI
Sbjct: 334 VNLFVKNLDDSIDSVKLEEEFKPFGT-ITSARVMV-DEHGKSKGFGFVCFSSPEEATKAI 391
Query: 255 SAFQGKLFMGRPLRVA 270
+ ++F G+PL VA
Sbjct: 392 TEMNQRMFHGKPLYVA 407
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L +++ + ++ FV + + A AA+ N+ R +
Sbjct: 150 DNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVY 209
Query: 173 VN--YAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
V +K +++ F ++ A F N+++ N+ +++R+ F E + +++ +
Sbjct: 210 VGKHVSKKDRESKFEEMK----ANFTNVYVKNIDLGFSEEEMRKLF--EPYGKITSLHLE 263
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D +S G+GFV+F+S + A A+ K G+ L V
Sbjct: 264 KDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVG 304
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + + F+ GT+ + + +++G FV SP+EAT
Sbjct: 330 KYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATK 389
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + F G+ L V A+ K
Sbjct: 390 AITEMNQRMFHGKPLYVALAQRK 412
>gi|300120416|emb|CBK19970.2| unnamed protein product [Blastocystis hominis]
Length = 639
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
RL QN+P++ E++R Q+G ++D+ + ++SK ++G AFVT P++A AA+ L
Sbjct: 108 RLFLQNIPYSCKEEELREFISQYGEIVDVFIPLNSKRESKGYAFVTFMFPEQAIAAIEKL 167
Query: 162 ESYEFEGRTLKVNYAKIKKK 181
+ F+GR L+VN A +KK+
Sbjct: 168 DGSVFQGRVLRVNVANVKKE 187
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 20/199 (10%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL----SMHSKNRNRGLAFVTMGSP 151
E+ S T + +N+ W +T +R LF + I L + ++ G F +
Sbjct: 441 EDSSNTTIYIKNLNWKTTEAAVRKLFNSVPGLKSITLPKKKTPSGESLPMGFGFAVYETR 500
Query: 152 DEATAALNNLESYEFEGRTLKVNYA------KIKKKNPFPPVQPKPFATFNLFIANLSFE 205
+A ALN L +G L ++++ KK+ + L + N+ FE
Sbjct: 501 AQALRALNQLSGKALDGHVLDLSFSARSEIVTTKKRKLTARAEEDGEKRTKLLVRNVPFE 560
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRR----SAGYGFVSFKSKKVAETAISAFQGKL 261
A +LRE F S G ++ P++ S G+ FV + S A+TAI A
Sbjct: 561 ASRSELRELFGSFG------QLKSLRQPKKFDGTSRGFAFVEYVSSDDAKTAIKALASTH 614
Query: 262 FMGRPLRVAPSRQFARLQT 280
+GR L V +++ A + +
Sbjct: 615 LLGRKLVVEYAKEEANVNS 633
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E+ +T+L+ +NVP+ ++ ++R LF G + + +RG AFV S D+A
Sbjct: 544 EDGEKRTKLLVRNVPFEASRSELRELFGSFGQLKSLRQPKKFDGTSRGFAFVEYVSSDDA 603
Query: 155 TAALNNLESYEFEGRTLKVNYAK 177
A+ L S GR L V YAK
Sbjct: 604 KTAIKALASTHLLGRKLVVEYAK 626
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ N+ + + ++LREF IS+ ++V I ++ R S GY FV+F + A AI
Sbjct: 109 LFLQNIPYSCKEEELREF-ISQYGEIVDV-FIPLNSKRESKGYAFVTFMFPEQAIAAIEK 166
Query: 257 FQGKLFMGRPLRV 269
G +F GR LRV
Sbjct: 167 LDGSVFQGRVLRV 179
>gi|213623691|gb|AAI70089.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E ++E S+T L +N+P++++ E+++ +FE DI + + N+G+A+V
Sbjct: 365 NAENKKERDSRT-LFVKNIPYSTSAEELQEIFE---NAKDIRIPTGNDGSNKGIAYVEFS 420
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ EA AL + E EGR+L V++ K +N P + L + NLS+ A
Sbjct: 421 TEAEANKALEEKQGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKV-LVVNNLSYSATED 479
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LRE F + + N R+ G+ FV F S + A+ A+ + GR +R+
Sbjct: 480 SLREVFEK------ATSIRIPQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRL 533
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ R ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 443 FVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRIP---QNQG 498
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATF 195
R +G AFV S ++A A+++ + E EGR++++ ++ + VQ K
Sbjct: 499 RAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK----- 553
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ LS + + L+E F ++A ++ + S G+GFV F S + A+ A
Sbjct: 554 TLFVRGLSEDTTEETLKEAFDGS----INARIVTDRDTGASKGFGFVDFSSSEDAKAARE 609
Query: 256 AFQ 258
A +
Sbjct: 610 AME 612
>gi|32482110|gb|AAP84407.1| FCA protein [Triticum aestivum]
Length = 736
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 118 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 177
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 230
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALVAMNSLSGTYIM 275
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V+ + RE ++ + T + +N+ + E++R LFE +G + + L ++ +++G
Sbjct: 214 VSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGF 273
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF-- 195
FV S + A A+ L + G+ L V A+ K+ K + + + + +
Sbjct: 274 GFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQG 333
Query: 196 -NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
NLF+ NL + L E F G + SA V+ D +S G+GFV F S + A AI
Sbjct: 334 VNLFVKNLDDSIDSVKLEEEFKPFGT-ITSARVMV-DEHGKSKGFGFVCFSSPEEATKAI 391
Query: 255 SAFQGKLFMGRPLRVA 270
+ ++F G+PL VA
Sbjct: 392 TEMNQRMFHGKPLYVA 407
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L +++ + ++ FV + + A AA+ N+ R +
Sbjct: 150 DNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVY 209
Query: 173 VN--YAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
V +K +++ F ++ A F N+++ N+ +++R F E + +++ +
Sbjct: 210 VGKHVSKKDRESKFEEMK----ANFTNVYVKNIDLGFSEEEMRNLF--EPYGKITSLHLE 263
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D +S G+GFV+F+S + A A+ K G+ L V
Sbjct: 264 KDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVG 304
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + + F+ GT+ + + +++G FV SP+EAT
Sbjct: 330 KYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATK 389
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + F G+ L V A+ K
Sbjct: 390 AITEMNQRMFHGKPLYVALAQRK 412
>gi|32482125|gb|AAP84413.1| FCA protein, partial [Triticum aestivum]
Length = 722
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 114 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 173
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 174 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 226
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 227 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 271
>gi|32482149|gb|AAP84420.1| FCA-D1 [Triticum aestivum]
Length = 659
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 39 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVEYATSEEAERAIR 98
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 99 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 151
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 152 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 196
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR F G + SA+V+ D RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSINDERLRREFAPFG-TITSAKVMMEDG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ + +PL VA
Sbjct: 355 MNGRIIVTKPLYVA 368
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 105 AQNVPWTST-----HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDE 153
A N P S H DI LFE+ G VL I + R+ G A+V P +
Sbjct: 5 APNYPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A AL+ + +GR +++ +++ ++P + N+FI NL K + +
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F + G +++S +V D S GYGFV F++++ A +I G L G+ + V
Sbjct: 118 TFSAFG-NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVG 172
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHADITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|32482100|gb|AAP84402.1| FCA protein [Triticum aestivum]
Length = 736
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 118 VKLFVGSVPRTANEDDVRPLFENHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 177
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 230
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|32482147|gb|AAP84419.1| FCA-B2 [Triticum aestivum]
Length = 740
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 122 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 182 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 234
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 235 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 279
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 91 TEQRE--EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E++E EE T + +N+ T + IR F + G V + + ++RG FV
Sbjct: 195 CERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNF 254
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAK--------IKKKNPFPPVQPKPFATFNLFIA 200
SPDEA A+ L + L V A+ +K + NL++
Sbjct: 255 ESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVK 314
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL L+E F S G + SA+V+ HD+ S G+GFV F + + A+ A++ G
Sbjct: 315 NLDASVDDDKLQEHFSSCG-QITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGT 372
Query: 261 LFMGRPLRVAPSRQ 274
L GR L +A +++
Sbjct: 373 LLHGRSLYIAMAQR 386
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 8/198 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ +F + G +L +++ +++ FV S D ATAALN L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+G+ L V+ +KK + F N+++ NL + +R+ F G
Sbjct: 178 DTMLDGKKLFVSKF-VKKCERKEASEETKFT--NVYVKNLGEDLTEDIIRDKFSEFG--K 232
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
V VI D +S G+GFV+F+S A+ A+ A G + + L V +++ A Q E
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQ--E 290
Query: 283 GLHSDETSDDLNINAEEA 300
L ++ + NI E+A
Sbjct: 291 LLKHEKEMVNCNIGKEKA 308
>gi|443724444|gb|ELU12456.1| hypothetical protein CAPTEDRAFT_172701 [Capitella teleta]
Length = 359
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 11/181 (6%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRN 140
+ S +AV QR+ + SKT L+ +P + T +DIR+LF G V +L + ++
Sbjct: 9 NGGSESAVQVLQRDMKDSKTNLIVNYLPQSMTQDDIRSLFSSIGEVESCKLIRDKATGQS 68
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G FV ++A+ A+ +L + +T+KV+ A+ P + A NL+I+
Sbjct: 69 LGYGFVNYKRQEDASKAITSLNGLRLQNKTIKVSVAR-------PSSESIKGA--NLYIS 119
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L DL F G +++++ ++ N S G GF+ F + AE AI G
Sbjct: 120 GLPKNMTQVDLENMFNHCG-NIITSRILCDQNTGISKGVGFIRFDQRHEAERAIKMLNGT 178
Query: 261 L 261
+
Sbjct: 179 I 179
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L D+R F S G +V S ++I +S GYGFV++K ++ A AI+
Sbjct: 29 NLIVNYLPQSMTQDDIRSLFSSIG-EVESCKLIRDKATGQSLGYGFVNYKRQEDASKAIT 87
Query: 256 AFQGKLFMGRPLRVAPSR 273
+ G + ++V+ +R
Sbjct: 88 SLNGLRLQNKTIKVSVAR 105
>gi|32482074|gb|AAP84393.1| FCA protein [Triticum aestivum]
Length = 724
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 107 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 166
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 167 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 219
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 220 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 264
>gi|347966748|ref|XP_321180.5| AGAP001883-PA [Anopheles gambiae str. PEST]
gi|333469916|gb|EAA01735.5| AGAP001883-PA [Anopheles gambiae str. PEST]
Length = 396
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM--------HSKNRNRGLA 144
Q + S+T L+ +P T T E+IR+LF G V ++L K ++ G
Sbjct: 66 QSSDNNSRTNLIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYG 125
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
FV P +A A+N L + + LKV++A+ + NL+I+ L
Sbjct: 126 FVNYHRPQDAEQAVNVLNGLRLQNKVLKVSFARPSSEG---------IKGANLYISGLPK 176
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++L F G +++++ V+ D + G GF+ F +K AE AI A G
Sbjct: 177 TITQEELETIFRPYG-EIITSRVLIQDGNDKPKGVGFIRFDQRKEAERAIQALNG 230
>gi|32482108|gb|AAP84406.1| FCA protein [Triticum aestivum]
Length = 724
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 107 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 166
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 167 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 219
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 220 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 264
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T+T +D+R +F + GT+ + + R++ FV SPDEA A+ +L +
Sbjct: 218 KNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKK 277
Query: 166 FE------GRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARAKDLREFFI 216
F+ GR K + +++ K F + NL++ NL + LRE F
Sbjct: 278 FDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRELFA 337
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR--- 273
G +++ + D+ S G GFV+FKS + A A++ K+ +PL VA ++
Sbjct: 338 EFG--AITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRKE 395
Query: 274 -QFARLQTK 281
+ ARLQ +
Sbjct: 396 DRKARLQAQ 404
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F Q G V+ + + R G A+V +P +A AL L GR +++ Y+
Sbjct: 53 VFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYS-- 110
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P ++ T N+FI NL K L + F G +++S +V D S G
Sbjct: 111 ---NRDPSLRKS--GTANIFIKNLDKSIDNKALYDTFCVFG-NILSCKVA-TDASGESKG 163
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
YGFV ++ + A AI G L + + V P F R Q ++
Sbjct: 164 YGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP---FIRKQERD 204
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 116 DIRALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL++ G +L +++ + ++G FV + A AA+ L + +
Sbjct: 134 DNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVY 193
Query: 173 VN--YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
V K ++ N P N+F+ NLS DLRE F G +++ V+
Sbjct: 194 VGPFIRKQERDN-----SPGNVKFNNVFVKNLSETTTEDDLREIFGKFG--TITSVVVMR 246
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
+ RS +GFV+F+S A A+ GK F
Sbjct: 247 EGDGRSKCFGFVNFESPDEAALAVQDLNGKKF 278
>gi|32482090|gb|AAP84398.1| FCA protein [Triticum aestivum]
Length = 719
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 104 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 163
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 164 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 216
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 217 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 261
>gi|32482112|gb|AAP84408.1| FCA protein [Triticum aestivum]
Length = 741
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 124 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 183
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 184 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 236
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 237 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 280
>gi|32482096|gb|AAP84401.1| FCA protein [Triticum aestivum]
Length = 735
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 118 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 177
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIGHKLFVASLNKQATAKEIEEIFA 230
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|32482373|gb|AAP84379.1| FCA protein [Triticum aestivum]
Length = 737
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA---TA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +EA
Sbjct: 120 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERVIR 179
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 232
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 233 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 277
>gi|32482140|gb|AAP84416.1| FCA protein, partial [Triticum aestivum]
Length = 740
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 120 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 179
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 232
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 233 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 277
>gi|32482102|gb|AAP84403.1| FCA protein [Triticum aestivum]
Length = 730
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEA---TA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +EA
Sbjct: 113 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERVIR 172
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 173 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 225
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 226 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 270
>gi|32482390|gb|AAP84384.1| FCA protein [Triticum aestivum]
Length = 737
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 120 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 179
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 232
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 233 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 277
>gi|326512286|dbj|BAJ96124.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 104 VAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNLE 162
V + E+IR LF++ G + ++LS + N RGLAFVT S + A +L L+
Sbjct: 60 VGEGAESYECEEEIRELFDRFGPIRSLQLSRFPDSGNFRGLAFVTFESDEVALKSLE-LD 118
Query: 163 SYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
Y+ R ++V +I +KK F KP + ++ NLS+ KDLR+FF
Sbjct: 119 GYKIGNRFMRVERCRITASSKRQKKTEFQSDPEKPDGCLSAYVGNLSWNISEKDLRDFFK 178
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
S + S S G+ V F+ + E A+ Q +L GRP+++A
Sbjct: 179 SS--RIASIRFAIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL-RGRPVKIA 229
>gi|449462184|ref|XP_004148821.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
gi|449511891|ref|XP_004164081.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
Length = 675
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L +VP T+T E IR LFE+HG V+++ L + + +G FV + +EA A+ N
Sbjct: 53 KLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRN 112
Query: 161 LES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L + + G ++V YA +++ + LF+ +L+ +A K+++E F
Sbjct: 113 LHNQHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQASEKEVKEIFSP 165
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G VV + D ++S G GFV + + +A AI+A G M
Sbjct: 166 YG--VVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTM 209
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR F G + SA+V+ D RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSINDERLRREFAPFG-TITSAKVMMEDG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ + +PL VA
Sbjct: 355 MNGRIIVTKPLYVA 368
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVG 172
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHADITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|32482394|gb|AAP84386.1| FCA protein [Triticum aestivum]
Length = 735
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 118 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 177
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNRQATAKEIEEIFA 230
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 91 TEQRE--EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E++E EE T + +N+ T + IR F + G V + + ++RG FV
Sbjct: 195 CERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNF 254
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAK--------IKKKNPFPPVQPKPFATFNLFIA 200
SPDEA A+ L + L V A+ +K + NL++
Sbjct: 255 ESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVK 314
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL L+E F S G + SA+V+ HD+ S G+GFV F + + A+ A++ G
Sbjct: 315 NLDASVDDDKLQEHFSSCG-QITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGT 372
Query: 261 LFMGRPLRVAPSRQ 274
L GR L +A +++
Sbjct: 373 LLHGRSLYIAMAQR 386
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 8/198 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ +F + G +L +++ +++ FV S D ATAALN L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+G+ L V+ +KK + F N+++ NL + +R+ F G
Sbjct: 178 DTMLDGKKLFVSKF-VKKCERKEASEETKFT--NVYVKNLGEDLTEDIIRDKFSEFG--K 232
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
V VI D +S G+GFV+F+S A+ A+ A G + + L V +++ A Q E
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQ--E 290
Query: 283 GLHSDETSDDLNINAEEA 300
L ++ + NI E+A
Sbjct: 291 LLKHEKEMVNCNIGKEKA 308
>gi|222142946|gb|ACI16484.2| flowering time control protein [Hordeum vulgare]
Length = 743
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 124 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 183
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 184 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 236
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 237 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 281
>gi|32482114|gb|AAP84409.1| FCA protein [Triticum aestivum]
Length = 736
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 119 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 178
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 231
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 232 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 276
>gi|32482094|gb|AAP84400.1| FCA protein [Triticum aestivum]
Length = 737
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 119 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 178
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 231
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 232 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 276
>gi|32482106|gb|AAP84405.1| FCA protein [Triticum aestivum]
Length = 735
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 118 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 177
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 230
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|388582374|gb|EIM22679.1| RNA-binding domain-containing protein, partial [Wallemia sebi CBS
633.66]
Length = 202
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 36/207 (17%)
Query: 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRG 142
++ A + R+ +T L N+P+ +D++ LF + GTVL ++++ NR++G
Sbjct: 2 NTPGAGIGASGRD---GRTHLFVGNLPYRVRWQDLKDLFRKAGTVLRADVALGLDNRSKG 58
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----------- 191
V MGS +A A+ Y ++ RTL+V ++ + P Q +P
Sbjct: 59 YGNVLMGSEIDAAKAIELYNGYVWQTRTLEVRPDRLPPEYDLPGPQSQPHNQTIRPARTL 118
Query: 192 ------------------FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF-HDN 232
N+F+ NL + + ++L++ F + G +V+ AEV HD
Sbjct: 119 RALGSSPPANLATASTPSLTNRNIFVGNLPYNMQWQELKDTFRAAG-NVIRAEVATNHDG 177
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQG 259
S GYG ++F + A + F G
Sbjct: 178 --TSKGYGIITFADESEAIQGVQMFDG 202
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ NL + R +DL++ F G V+ A+V DN RS GYG V S+ A AI
Sbjct: 19 LFVGNLPYRVRWQDLKDLFRKAG-TVLRADVALGLDN--RSKGYGNVLMGSEIDAAKAIE 75
Query: 256 AFQGKLFMGRPLRVAPSR 273
+ G ++ R L V P R
Sbjct: 76 LYNGYVWQTRTLEVRPDR 93
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 91 TEQRE--EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E++E EE T + +N+ T + IR F + G V + + ++RG FV
Sbjct: 195 CERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNF 254
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAK--------IKKKNPFPPVQPKPFATFNLFIA 200
SPDEA A+ L + L V A+ +K + NL++
Sbjct: 255 ESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVK 314
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL L+E F S G + SA+V+ HD+ S G+GFV F + + A+ A++ G
Sbjct: 315 NLDASVDDDKLQEHFSSCGQ-ITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGT 372
Query: 261 LFMGRPLRVAPSRQ 274
L GR L +A +++
Sbjct: 373 LLHGRSLYIAMAQR 386
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 8/198 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ +F + G +L +++ +++ FV S D ATAALN L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+G+ L V+ +KK + F N+++ NL + +R+ F G
Sbjct: 178 DTMLDGKKLFVSKF-VKKCERKEASEETKFT--NVYVKNLGEDLTEDIIRDKFSEFGK-- 232
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
V VI D +S G+GFV+F+S A+ A+ A G + + L V +++ A Q E
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQ--E 290
Query: 283 GLHSDETSDDLNINAEEA 300
L ++ + NI E+A
Sbjct: 291 LLKHEKEMVNCNIGKEKA 308
>gi|32482123|gb|AAP84412.1| FCA protein, partial [Triticum aestivum]
Length = 737
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 120 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 179
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 232
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 233 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 277
>gi|32482092|gb|AAP84399.1| FCA protein [Triticum aestivum]
Length = 740
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 124 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 183
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 184 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 236
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 237 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 281
>gi|32482142|gb|AAP84417.1| FCA-A1 [Triticum aestivum]
gi|32482144|gb|AAP84418.1| FCA-A2 [Triticum aestivum]
Length = 741
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 124 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 183
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 184 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 236
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 237 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 281
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W E +++ FE G V+ + M + R++G +V+ +P+ A A+ + E +G
Sbjct: 400 WNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEMNGKEIDG 459
Query: 169 RTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIANLSFEARAKDLREFFISEGWDV 222
R + VN A K P P + K F + LF+ N+SF A L E F G D+
Sbjct: 460 RAVNVNAA--TPKTPNPAGRAKQFGDTVSAESKVLFVGNVSFNANEDMLWETFGEHG-DI 516
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
VS + + G+G+V F S + A++A +A GK GR +R+
Sbjct: 517 VSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNGKDIAGRNIRL 563
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
A N+F+ LS+ + L+ F + G +VV A V RS G+G+VSF + + AE
Sbjct: 389 ANCNIFVGKLSWNVDDEWLKSEFEACG-EVVRASVQMDRQTGRSKGFGYVSFSTPEAAEK 447
Query: 253 AISAFQGKLFMGRPLRV 269
AI+ GK GR + V
Sbjct: 448 AIAEMNGKEIDGRAVNV 464
>gi|347966814|ref|XP_321133.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|347966816|ref|XP_003435970.1| AGAP001930-PB [Anopheles gambiae str. PEST]
gi|333469887|gb|EAA00972.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|333469888|gb|EGK97443.1| AGAP001930-PB [Anopheles gambiae str. PEST]
Length = 412
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
+++ K +L + W ++HE+++ F ++G V+D + + + R+RG FVT P+
Sbjct: 13 DDHEKGKLFVGGLSWETSHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENV 72
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
AL N + +GRT+ K NP +PK + +F+ L DLR
Sbjct: 73 ERALEN-GPHTLDGRTIDP-----KPCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRS 126
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G V+ +++ ++S G+GF+SF+++ E A +
Sbjct: 127 FFCRYG-TVMEVVIMYDQEKKKSRGFGFLSFENESAVERATT 167
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 93 QREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
QREEE T + +N +T E + +F Q+G + +++ +++G F+
Sbjct: 186 QREEERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIR 245
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN------PFPPVQPKPFATF---NLF 198
+A A+ + +F GR + V+ A+ KK+ ++ A + +LF
Sbjct: 246 FECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLF 305
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL+ + LR+ F G V SA+VI R+ G+GFVSF S++ A+ A+
Sbjct: 306 VKNLAESTDDEHLRKIFAPFG-TVTSAKVIVKGGRRK--GFGFVSFSSREEAKKAVEEMH 362
Query: 259 GKLFMGRPLRVAPSR 273
GK+ RPL V+ +R
Sbjct: 363 GKMLSARPLYVSYAR 377
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L + + + +R+ G +V P++A ALN + G+ +++ +
Sbjct: 39 FSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGKPVRIMWC--- 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+F+ +L K+L + F G ++S +V+ +N + G+
Sbjct: 96 HRDP----SLRRSGVGNVFVNHLDASIDNKELYDLFAGFG-TILSCKVVSDENGPK--GH 148
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
GFV F++++ A+ AI G L R + V QF R +E
Sbjct: 149 GFVHFETREAADKAIKEMNGSLVKERKVFVG---QFKRPNQRE 188
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 114 HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173
++++ LF GT+L ++ + +N +G FV + + A A+ + + R KV
Sbjct: 120 NKELYDLFAGFGTILSCKV-VSDENGPKGHGFVHFETREAADKAIKEMNGSLVKER--KV 176
Query: 174 NYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
+ K+ N + F N+++ N + + L E F G +S+ I D+
Sbjct: 177 FVGQFKRPNQREEERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYG--PLSSVKIMTDD 234
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S G+GF+ F+ A+ AI GK F GR + V+
Sbjct: 235 SGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVS 272
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ R +Y L +N+ ++ E +R +F GTV ++ + R +G FV+ S
Sbjct: 293 QNRIAKYHGMSLFVKNLAESTDDEHLRKIFAPFGTVTSAKVIVKG-GRRKGFGFVSFSSR 351
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EA A+ + R L V+YA+ K++
Sbjct: 352 EEAKKAVEEMHGKMLSARPLYVSYARYKQE 381
>gi|154308771|ref|XP_001553721.1| hypothetical protein BC1G_07808 [Botryotinia fuckeliana B05.10]
gi|347831781|emb|CCD47478.1| hypothetical protein [Botryotinia fuckeliana]
Length = 381
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + ED++ FE GT+ D+ ++ ++ ++G A++ ATAA+ F
Sbjct: 171 NLLFDINEEDLKKEFEHFGTITDVRVTRDARGLSKGFAYIDFADVQSATAAIEAKNQTIF 230
Query: 167 EGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
EGR L VNY KI+ +N PP + LFI NL+FE DL F E +V
Sbjct: 231 EGRRLVVNYINQTPKIRDQN--PPSKC-------LFIGNLAFEMSDADLNSLF-REVRNV 280
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ V + G+ F A A+ QGK R LRV
Sbjct: 281 IDVRVAIDRRTGQPRGFAHADFVDVDSAMKALEQLQGKEVFNRRLRV 327
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E ++ F + G ++ + ++ +RG FV +PD+A A+
Sbjct: 192 TNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMER 251
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E + L V A+ + + F + + F N+++ N+ + ++L
Sbjct: 252 MNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEEL 311
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
RE F S+ + SA+ + D+ RS G+GFV F S + A A++ F G +F +PL VA
Sbjct: 312 REHF-SQCGTITSAK-LMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVA 368
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
++ LF + GTVL +++ +++G FV S D A +A+ L + + V
Sbjct: 117 LQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYV--G 174
Query: 177 KIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
K KK+ V P P A + NL++ NL + L+E F SE +VS I D
Sbjct: 175 KFVKKSDR--VLPSPDAKYTNLYVKNLDPGITEELLQEKF-SEFGKIVSV-AIARDECGS 230
Query: 236 SAGYGFVSFKSKKVAETAISAFQGK------LFMGRPLRVAPSRQFARLQTKE 282
S G+GFV+F++ A A+ G L++GR + A Q R Q +E
Sbjct: 231 SRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEE 283
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 92 EQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+R+E+ +K + + +N+ T E++R F Q GT+ +L K R++G FV
Sbjct: 283 EKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVCF 342
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
S +EA+ A+N Y F + L V A+ K++
Sbjct: 343 SSSEEASKAVNTFHGYMFHRKPLYVAIAQRKEE 375
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 136 SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF 195
S R+ +V SP++A A+ G+ ++V ++ ++P +
Sbjct: 49 STGRSLCYGYVNFISPEDAIRAIETKNHTPLNGKLMRVMWSH---RDP----DARRNGIG 101
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEV-IFHDNPRRSAGYGFVSFKSKKVAETAI 254
N+++ NLS L+E F E V+S +V F D +S G+GFV F+S+ A +AI
Sbjct: 102 NVYVKNLSESIDNVGLQELF-GEFGTVLSCKVATFEDG--KSKGHGFVQFESEDSANSAI 158
Query: 255 SAFQGKLFMGRPLRVA 270
G + + + V
Sbjct: 159 EKLNGSIVGDKQIYVG 174
>gi|32482079|gb|AAP84395.1| FCA protein [Triticum aestivum]
Length = 734
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 117 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 176
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 177 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 229
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 230 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 274
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + A+N+ + E+ + LFE +G + I L + +++G FV + + A A++
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + + + NLFI NL ++ L
Sbjct: 292 LNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKL 351
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA V+ D +S G+GFV F S + A AI+ ++ G+PL VA
Sbjct: 352 EEEFKPFG-SITSARVMV-DETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVA 408
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ T E + F+ G++ + + +++G FV SP+EAT
Sbjct: 331 KYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATK 390
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + G+ L V A+ K
Sbjct: 391 AITEMNQRMIYGKPLYVALAQRK 413
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 105/245 (42%), Gaps = 40/245 (16%)
Query: 70 FHFSATTQDPFVDSS----SAAAVNTEQREEE-----------YS-KTRLVAQNVPWTST 113
F FS+ + P + S S AV++E +EE YS RL N+P++
Sbjct: 37 FSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVD 96
Query: 114 HEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
+ +FE G V +E+ S R+RG FVTM S E AA L Y +GR L+
Sbjct: 97 SAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELR 156
Query: 173 VNYAKIK---------KKNP--------FPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
VN +NP PP + + NL++ L F
Sbjct: 157 VNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLF 216
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS--- 272
+G V+ A+VI+ RS G+GFV+F S ++AI G GR +RV+P+
Sbjct: 217 GEQGQ-VLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPADSR 275
Query: 273 --RQF 275
RQF
Sbjct: 276 PKRQF 280
>gi|32482381|gb|AAP84380.1| FCA protein [Triticum aestivum]
Length = 721
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 104 VKLFVGSVPRTANEDDVRPLFEGHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 163
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 164 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 216
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+ + G M
Sbjct: 217 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMDSLSGTYIM 261
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPK---PFATFNLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F+ G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVSTKPLYVA 366
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSAFGNILSCKV-VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + K LRE F + G + +S +V+ D+ RS G+G
Sbjct: 178 ERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG-NTLSVKVMM-DDSGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV++ + + A+ A+S GK GR + V
Sbjct: 235 FVNYGNHEEAQKAVSEMNGKEVNGRMIYVG 264
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPK---PFATFNLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F+ G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVSTKPLYVA 366
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSAFGNILSCKV-VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + K LRE F + G + +S +V+ D+ RS G+G
Sbjct: 178 ERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG-NTLSVKVMM-DDSGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV++ + + A+ A+S GK GR + V
Sbjct: 235 FVNYGNHEEAQKAVSEMNGKEVNGRMIYVG 264
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 8/174 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W E ++ FE G V+ + M S ++RG +V + D A AL +
Sbjct: 177 LFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKALVEM 236
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIANLSFEARAKDLREFF 215
+ E +GR + ++ + K + K F + LFI NLSF A+ +L E F
Sbjct: 237 QGKEIDGRPINLDMSTGKPHASKSNDRAKQFGDTPSAPSDTLFIGNLSFNAQRDNLFEIF 296
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G V+S + H + ++ G+G+V F S A+ A+ A G+ GR R+
Sbjct: 297 GQHG-TVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGRACRL 349
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + +++ +F QHGTV+ + H + +G +V S DEA AAL L
Sbjct: 278 LFIGNLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 337
Query: 162 ESYEFEGRTLKVNYA 176
EGR +++++
Sbjct: 338 NGEYIEGRACRLDFS 352
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 105/206 (50%), Gaps = 18/206 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
+ R+ E SKT+ + +N+ +++ +D+R F ++GT+ + + + +++ FV
Sbjct: 207 QDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNF 266
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPV---QPKPFATFNLFI 199
+P++A A++ L +F+ G+ K + +++ K+ F Q + NL++
Sbjct: 267 ENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYV 326
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + L+E F SE + S +V+ D S G GFV+F + + A A+ G
Sbjct: 327 KNLDDTIDDEKLKELF-SEYGTITSCKVM-RDPSGISRGSGFVAFSTPEEASRALGEMNG 384
Query: 260 KLFMGRPLRVAPSR----QFARLQTK 281
K+ + +PL VA ++ + ARLQ +
Sbjct: 385 KMIVSKPLYVALAQRKEERRARLQAQ 410
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
+++ T L ++ + T + LF Q G V+ + + S R+ G +V + +AT
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A++ L +T++V+ + +++P + N+FI NL K L E F
Sbjct: 96 RAIDVLNFTPLNNKTIRVS---VSRRDP----TDRKSGAGNIFIKNLDKSIDIKALHETF 148
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
S G ++S + I D +S GYGFV + S++ A+TAI G L
Sbjct: 149 SSFGT-IISCK-IATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLM 193
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
+++ ++Y L +N+ T E ++ LF ++GT+ ++ +RG FV +
Sbjct: 312 VKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFST 371
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
P+EA+ AL + + L V A+ K++
Sbjct: 372 PEEASRALGEMNGKMIVSKPLYVALAQRKEE 402
>gi|432896166|ref|XP_004076291.1| PREDICTED: uncharacterized protein LOC101157077 [Oryzias latipes]
Length = 515
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+P +THE+I +F +G + L R AFVT+ A A+ +L
Sbjct: 7 KLFVGNLPIDATHEEISKIFSPYGEINTCSLL-------RQYAFVTLKGEGAADRAIRHL 59
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG-- 219
+ E+ GR L V ++ + N + +F+ NLS A DL F + G
Sbjct: 60 DGKEYRGRPLVVEESRARPPN-----------STKIFVGNLSATCSADDLHGLFSTFGRV 108
Query: 220 --WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
D V A + + GY FV + K+ A+ AI A G +F GR L V S+
Sbjct: 109 LDCDKVKARLCSN------VGYAFVHMERKEEAQAAIDALNGTMFKGRQLAVELSKAQPL 162
Query: 278 LQTKEGLHSDETSD 291
+ G ++ + D
Sbjct: 163 VNQMSGNSANSSGD 176
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E R + T++ N+ T + +D+ LF G VLD + N G AFV M
Sbjct: 70 VVEESRARPPNSTKIFVGNLSATCSADDLHGLFSTFGRVLDCDKVKARLCSNVGYAFVHM 129
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+EA AA++ L F+GR L V +K +
Sbjct: 130 ERKEEAQAAIDALNGTMFKGRQLAVELSKAQ 160
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 14/190 (7%)
Query: 92 EQREEEYSKTRLVAQN-VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
E EE + T + +N +P T E IR LF +G + + + + +G AFV
Sbjct: 250 EASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAK 309
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA----------KIKKKNPFPPVQPKPFATFNLFIA 200
P+ A A+ L +FEG++L V A + K +N + K + NL++
Sbjct: 310 PECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAEIL-KKYQGVNLYVR 368
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + + LR+ F + +++ + D+ S G+GFV F + + A A++ GK
Sbjct: 369 NLPDDMDEEGLRKEF--SNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGK 426
Query: 261 LFMGRPLRVA 270
+ +PL V
Sbjct: 427 MMGKKPLYVC 436
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R+ G A+V S D+A AL + Y + ++ KN P + + N+F
Sbjct: 116 RSLGYAYVNFHSMDDAERALETMNFYACP--QTRDKPMRLMWKNRDPTI--RKSGAGNVF 171
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I NL K L + F G +++S +V D+ S GYGFV F++ + AETAI+
Sbjct: 172 IKNLDKAIDNKTLFDTFSVFG-NILSCKVA-TDDEGNSLGYGFVHFENPEDAETAINKVN 229
Query: 259 GKLF 262
G L
Sbjct: 230 GMLL 233
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
++Y L +N+P E +R F GT+ + K +RG FV +P+EAT
Sbjct: 358 KKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEAT 417
Query: 156 AALNNLESYEFEGRTLKVNYAKIKK 180
A+ + + L V A+ K+
Sbjct: 418 KAVTEMNGKMMGKKPLYVCLAQRKE 442
>gi|356521753|ref|XP_003529516.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 737
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAA 157
+L +VP T+T EDIR LFE+HG V+++ L K +++G F+ T D+A A
Sbjct: 87 KLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRA 146
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +++ + LF+ +L+ +A K++ E F
Sbjct: 147 LHNQHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQATVKEVEEIFSK 199
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V + D ++S G GFV + + +A AI+A G M
Sbjct: 200 YG--RVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTM 243
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 29/239 (12%)
Query: 68 FVFHFSATTQDPFVDSSSAAAVNTEQ--------REEEYSK--------TRLVAQNVPWT 111
FV + +A D + + + +N ++ R+E SK T + +N+
Sbjct: 180 FVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAE 239
Query: 112 STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T E+ R LFEQ G V + + R++G FV +EA + +L +E G+ L
Sbjct: 240 VTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKL 299
Query: 172 KVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDV 222
V A+ K + + + + + + NL+I NL E + LR+ F E +
Sbjct: 300 FVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEF--EPFGT 357
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV--APSRQFARLQ 279
+++ + D S G+GFV F S A A++ K+ +PL V A R+ R Q
Sbjct: 358 ITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQ 416
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169
T T + +F G V I + + R+ G A+V + + AL L +GR
Sbjct: 58 TVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKGR 117
Query: 170 TLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
++ +++ ++P + N+FI NL K L + F + G +V+S +V
Sbjct: 118 ACRIMWSQ---RDP----ALRKTGQGNIFIKNLDEGIDNKALHDTFAAFG-NVLSCKVA- 168
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
D RS GYGFV +++ + A+TAI A G L + + V P
Sbjct: 169 TDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGP 210
>gi|32482388|gb|AAP84383.1| FCA protein [Triticum aestivum]
Length = 710
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 118 VKLFVGSVPRTANEDDVRPLFEYHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 177
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 230
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T ++ F G ++ + +S ++G AFV +PD+A A+
Sbjct: 191 TNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEA 250
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPV-----------QPKPFATFNLFIANLSFEARAK 209
+ +F + L V A+ +KK + Q + NL++ N+ + K
Sbjct: 251 MNGLKFGSKNLYV--ARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDK 308
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+LR+ F S G +++ + D+ S G+GFV F + + A A+ +F G +F +PL +
Sbjct: 309 ELRDLFSSCG--TITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYI 366
Query: 270 APSRQFARLQTKEGLH 285
A +++ +T+ LH
Sbjct: 367 AIAQRKMDRKTQLNLH 382
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 92 EQREEE---YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+R+E+ Y + L +N+ T +++R LF GT+ +++ K ++G FV
Sbjct: 282 EKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCF 341
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+P+EA A+ + F + L + A+ K
Sbjct: 342 SNPEEANKAVRSFNGCMFHRKPLYIAIAQRK 372
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
+V S +A A+ + G+ ++V ++ P + N+F+ NL+
Sbjct: 56 GYVNFKSQQDAIRAMKLKNNSYLNGKVIRVMWSH-------PDPSARKSGRGNVFVKNLA 108
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG---- 259
L + F G +++S++V+ + + S GYGFV F+S++ A AI G
Sbjct: 109 GSIDNAGLHDLFQKYG-NILSSKVVMSGDGK-SKGYGFVQFESEESANNAIEKLNGSTVG 166
Query: 260 --KLFMGRPLR 268
++++G+ +R
Sbjct: 167 DKQIYVGKFVR 177
>gi|156845624|ref|XP_001645702.1| hypothetical protein Kpol_1043p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156116369|gb|EDO17844.1| hypothetical protein Kpol_1043p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 442
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 112 STHEDI-RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
S +EDI + F+ G + ++++ ++ KN AFV +A+ AL L + E T
Sbjct: 87 SINEDILKQYFQVGGPITNVKV-INDKNNEANYAFVEYSQHHDASIALKTLNGKQIENNT 145
Query: 171 LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE-------ARAKDLREFFISEGWDVV 223
LK+N+A ++N TFNLFI +L+ + A KD + F +
Sbjct: 146 LKINWAFQSQQNTTSD------ETFNLFIGDLNVDVDDETLVAAFKDFKSF--------I 191
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
A V++ RS GYGFVSF + A+ A+ QG GR LR+
Sbjct: 192 QAHVMWDMQTGRSRGYGFVSFSNLDDAQVAMDTMQGSELNGRQLRI 237
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
AV+ R T + N+P +T D+ L + G +LD + +G F+
Sbjct: 311 AVDDMIRRAPQRVTTVYIGNIPHFATEADLIPLLQNFGFILDFK-----HYPEKGNCFIK 365
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK-NPFPPVQP 189
+ ++A + L ++ F+GR LK + K K P PP P
Sbjct: 366 YDTHEQAAVCIVVLANFPFQGRNLKTGWGKEKSTFMPMPPQDP 408
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
R+RG FV+ + D+A A++ ++ E GR L++N+A
Sbjct: 203 RSRGYGFVSFSNLDDAQVAMDTMQGSELNGRQLRINWA 240
>gi|45360753|ref|NP_989050.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|38174074|gb|AAH61344.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|89269922|emb|CAJ81697.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 468
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 27/193 (13%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ ++ NV ++T E+I LFE++GTV++ + AFV M +EAT A+
Sbjct: 7 RMKIFVGNVDDSTTQEEITELFERYGTVVNCAVMKQ-------YAFVHMRGSEEATKAVE 59
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+L E G+ + V +K P+P T+ +F+ N+S ++R+ F G
Sbjct: 60 DLNGRELNGKKMLVELSK-----------PRPQNTWKIFVGNVSSSCEVSEIRKMFEEHG 108
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
VV +++ Y FV + + AI A GK G+ + V S + +
Sbjct: 109 R-VVECDIV--------KDYAFVHMTRESESRAAIEALNGKEVKGKRINVEMSHKVRPVA 159
Query: 280 TKEGLHSDETSDD 292
HS DD
Sbjct: 160 ANGSSHSRRRPDD 172
>gi|32482371|gb|AAP84378.1| FCA protein [Triticum aestivum]
Length = 736
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN----RGLAFVTMGSPDE--- 153
+L +VP T+ +D+R LFE HG VL++ L ++RN +G FV + +E
Sbjct: 119 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVAL---IRDRNTGEQQGCCFVKYATSEEAER 175
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A AL+N + ++V YA +K+ LF+A+L+ +A AK++ E
Sbjct: 176 AIRALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEE 228
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
F G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 229 IFAPFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 276
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF+++G L +++ M ++RG FV+ ++A A+ ++ E G+T+ V
Sbjct: 205 ERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ + RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + D A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N + + L+E F G +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGDDMDDERLKELFDKYG-KTLSVKVMM-D 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S G+GFVS++ + A A+ G G+ + V
Sbjct: 226 PTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVG 264
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M + R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEEGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF+++G L +++ M ++RG FV+ ++A A+ ++ E G+T+ V
Sbjct: 205 ERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ + RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + D A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGDDMDDERLKELFDKYG-KTLSVKVMM-DPTGKSRGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ G G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEDMNGTELNGKTVFVG 264
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M + R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEEGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|32482065|gb|AAP84389.1| FCA protein [Triticum aestivum]
Length = 739
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 123 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 182
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 183 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 235
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V + D R+S G GFV F SK+ A A+++ G M
Sbjct: 236 PFGH--VEDVYVMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 280
>gi|32482085|gb|AAP84397.1| FCA protein [Triticum aestivum]
Length = 740
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A A
Sbjct: 124 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYTTSEEAERAIRA 183
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 184 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAP 236
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 237 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 280
>gi|32482059|gb|AAP84387.1| FCA protein [Triticum aestivum]
Length = 728
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 111 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 170
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 171 ALHNQCTLPGAMGPVQVRYADGEKER-------HGSIEHILFVASLNKQATAKEIEEIFA 223
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 224 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 268
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 15/192 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T++ ED++ +F +G + + ++RG FV SPD A AA+
Sbjct: 212 TNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEK 271
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L F + V A+ K K F + + NL++ NL + L
Sbjct: 272 LNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERL 331
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+E F SE + S +V+ D S G GFV+F + + A A+S GK+ +PL VA
Sbjct: 332 KELF-SEFGSITSCKVML-DQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAI 389
Query: 272 SR----QFARLQ 279
++ + ARLQ
Sbjct: 390 AQRREERMARLQ 401
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G A+V +P +A A+ L G+ +++ ++ ++P + N+FI N
Sbjct: 75 GYAYVNFSNPQDAAKAMEVLNFTPLNGKPIRIMFSH---RDP----TTRRSGHANVFIKN 127
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L + K L E F S G V+S +V DN +S GYGF+ F++++ A++AI+ G L
Sbjct: 128 LDTKIDNKALYETFASFG-PVLSCKVAV-DNNGQSKGYGFIQFENEEDAQSAINRLNGML 185
Query: 262 FMGRPLRVAP-SRQFARLQ 279
R + V P R+ R++
Sbjct: 186 VNDREVYVGPFVRRLERIE 204
>gi|32482130|gb|AAP84415.1| FCA protein, partial [Triticum aestivum]
Length = 743
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 126 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 185
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 186 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIGEIFA 238
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 239 PFGH--VEDVYIMKDGMRQSRGSGFVKFSSKEPALAAMNSLSGTYIM 283
>gi|32482069|gb|AAP84391.1| FCA protein [Triticum aestivum]
Length = 732
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAALNNLE 162
+VP T+ +D+R LFE HG VL++ L K +G FV + +E A AL+N
Sbjct: 121 SVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRALHNQC 180
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ ++V YA +K+ LF+A+L+ +A AK++ E F G
Sbjct: 181 TIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFAPFGH-- 231
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 232 VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 272
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P +++ + +HG + + K ++G F+ + A +
Sbjct: 201 TNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEY 260
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPK---------PFATFNLFIANLSFEARAKDL 211
L E G+TL A+ K + Q + NL++ NLS E L
Sbjct: 261 LNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDAL 320
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
RE F + G +++ + D +S G+GFV F S A A++ GK+ G+PL VA
Sbjct: 321 RELFANSG--TITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVA 377
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 13/192 (6%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
SSA A T+ + + L ++ T + LF G V I + + R+ G
Sbjct: 6 SSAPAATTQPASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLG 65
Query: 143 LAFVTMGS---PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
A+V S P A A+ L + G+ +++ ++ ++P + N+FI
Sbjct: 66 YAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSH---RDP----SARKSGVGNIFI 118
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL AK L + F + G ++S +V N S GYGFV F+ + A+ AI
Sbjct: 119 KNLDKTIDAKALHDTFSAFG-KILSCKVATDANGV-SKGYGFVHFEDQAAADRAIQTVNQ 176
Query: 260 KLFMGRPLRVAP 271
K G+ + V P
Sbjct: 177 KEIEGKIVYVGP 188
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R +Y L +N+ + +R LF GT+ ++ +++G FV S
Sbjct: 295 QERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSH 354
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIK 179
DEAT A+ + +G+ L V A+ K
Sbjct: 355 DEATRAVTEMNGKMVKGKPLYVALAQRK 382
>gi|357479035|ref|XP_003609803.1| FCA [Medicago truncatula]
gi|355510858|gb|AES92000.1| FCA [Medicago truncatula]
Length = 862
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAA 157
+L +VP T+T EDIR LFE+HG V+++ L K +++G F+ T D+A A
Sbjct: 158 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 217
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +++ + LF+ +L+ +A K++ E F
Sbjct: 218 LHNRHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQASVKEVEEVFSK 270
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G + + D+ ++S G GFV + + +A AI+A G M
Sbjct: 271 YG--RIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTM 314
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T E +R +FE++G + ++ +++G FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFV 237
Query: 147 TMGSPDEATAALNNLESYE-FEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
SP+ A A+ L E +G+ L V A+ K K F ++ + + N
Sbjct: 238 AFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ DN RS G+GFV F S + A A++
Sbjct: 298 LYVKNLDDTIDDERLRKEFSPFG-TITSAKVMMEDN--RSKGFGFVCFSSPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 MNGRIVGSKPLYVA 368
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDLIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+N S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 AQDENGT-SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 172
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M NR++G FV SP+
Sbjct: 288 ERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMMED-NRSKGFGFVCFSSPE 346
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 347 EATKAVTEMNGRIVGSKPLYVALAQRKE 374
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F + G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHTDITEAMLFEKFSTAG-PVLSIRVCRDLITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ L GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDLIKGRPIRI 84
>gi|32482383|gb|AAP84381.1| FCA protein [Triticum aestivum]
Length = 737
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 120 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 179
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIGEIFA 232
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A ++ G M
Sbjct: 233 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAATNSLSGTYIM 277
>gi|157115109|ref|XP_001658116.1| single-stranded DNA-binding protein mssp-1 [Aedes aegypti]
gi|108877020|gb|EAT41245.1| AAEL007091-PA, partial [Aedes aegypti]
Length = 412
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 10/182 (5%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
NT Q+ E+ SKT L + + +T +D+ + Q+GT++ + ++ K N+ FV
Sbjct: 46 NTPQQTEQLSKTNLYIRGLQQNTTDKDLINMCAQYGTIISTK-AILDKTTNKCYGFVDFE 104
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
SP A A+ L+S + + KV + + P VQ + T NL+IANL +
Sbjct: 105 SPACAEGAVKGLQSKGIQAQMAKVGIWVLHR----PAVQQEQDPT-NLYIANLPLTYKET 159
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG--RPL 267
D+ E +S+ V+S I D +S G GF +S++ E I F G G PL
Sbjct: 160 DV-ENLLSKYGQVISTR-ILRDQNAQSKGVGFARMESREKCEQIIQMFNGTQLQGAKEPL 217
Query: 268 RV 269
V
Sbjct: 218 LV 219
>gi|157118269|ref|XP_001653144.1| heterogeneous nuclear ribonucleoprotein 27c [Aedes aegypti]
gi|94468876|gb|ABF18287.1| RNA-binding protein musashi/mRNA cleavage and polyadenylation
factor I complex subunit HRP1 [Aedes aegypti]
gi|108875770|gb|EAT39995.1| AAEL008257-PA [Aedes aegypti]
Length = 398
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
+++ K +L + W +T E+++ F ++G V+D + + + R+RG FVT PD
Sbjct: 13 DDHEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPDNV 72
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
AL N + +GRT+ K NP +PK + +F+ L DLR
Sbjct: 73 DRALEN-GPHTLDGRTIDP-----KPCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRS 126
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G +V+ +++ ++S G+GF+SF+++ E A +
Sbjct: 127 FFSRYG-NVMEVVIMYDQEKKKSRGFGFLSFENEPAVERATA 167
>gi|452001712|gb|EMD94171.1| hypothetical protein COCHEDRAFT_1020240 [Cochliobolus
heterostrophus C5]
Length = 325
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 5/170 (2%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ + T + ++ +F + G + + + ++ +RG A+V + +A AA++NL+
Sbjct: 138 LYIGNLYYEVTPDQLKRVFSRFGDIESVRMVYDNRGLSRGFAYVEYKNVSDAQAAIDNLD 197
Query: 163 SYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
FEGR L V Y K K P +P P T LFI N+SFE KDL + F +
Sbjct: 198 MQVFEGRNLVVQYHSPKYQTTKARSPNGEPNP-PTKTLFIGNMSFEMSDKDLNDLF-RDI 255
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+V V + G+ F A A + K+ GR LRV
Sbjct: 256 RNVTDVRVAIDRRTGQPRGFAHADFIDVASATRAKEVLKEKIIYGRQLRV 305
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T T ++I++LF G V +L ++ G FV P +A
Sbjct: 23 EDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAE 82
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ P Q A NL+++ L +DL F
Sbjct: 83 KAINTLNGLRLQAKTIKVSYAR-------PSSQAIKDA--NLYVSGLPKTMTQQDLEGLF 133
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+ G ++++ ++F +S G GFV F + AE AI+ G + G
Sbjct: 134 EAHGR-IITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKG 181
>gi|32482118|gb|AAP84411.1| FCA protein, partial [Triticum aestivum]
Length = 736
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL- 158
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +EA A+
Sbjct: 120 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRGRKTGEQQGCCFVKYATSEEAERAIR 179
Query: 159 --NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 AQHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 232
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 233 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGAYIM 277
>gi|322798581|gb|EFZ20185.1| hypothetical protein SINV_01390 [Solenopsis invicta]
Length = 523
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + Q +E SKT L+ +P + T ++IR+LF G V +L
Sbjct: 2 ANGMDTVVQQNGGSTLG--QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 59
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ +
Sbjct: 60 RDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS---------EAI 110
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
NL+++ L +DL F G ++++ ++ + S G GF+ F + AE
Sbjct: 111 KGANLYVSGLPKNMAQQDLENLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRVEAER 169
Query: 253 AISAFQGKLFMG 264
AI G + G
Sbjct: 170 AIQELNGTIPKG 181
>gi|356565014|ref|XP_003550740.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 733
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGL 143
S + R + S +L +VP T++ EDIR LFE+HG V+++ L K +++G
Sbjct: 70 SGRGGGSPDRLDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGC 129
Query: 144 AFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
F+ T D+A AL+N + ++V YA +++ + LF+
Sbjct: 130 CFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVG 182
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+L+ +A K++ E F G V + D ++S G GFV + + +A AI+A G
Sbjct: 183 SLNKQATVKEVEEIFSKYG--RVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGI 240
Query: 261 LFM 263
M
Sbjct: 241 YTM 243
>gi|350633123|gb|EHA21489.1| hypothetical protein ASPNIDRAFT_125918 [Aspergillus niger ATCC
1015]
Length = 264
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
NV + T ED++ E++G V + L + ++ ++G +V S D A A++ L F
Sbjct: 99 NVFYDVTREDLKKAMEKYGVVEKVVLVLDNRGISKGYGYVQFDSIDAAQRAVDALNMRLF 158
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + V +A+ N + Q T L+I NL FE +DL E F + +VV
Sbjct: 159 EGRRVTVQFAQ---NNVYHRRQLNA-PTRTLYIGNLPFEMTDRDLNELF-KDVQNVVDIR 213
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
V ++ G+ F S A+ A++ + KL GR LR+ S+ +R
Sbjct: 214 VAVDRRTGQARGFAHAEFVSTSSAKAAMAILENKLPYGRRLRLDYSKATSR 264
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+Q P +FI N+ ++ +DL++ E + VV V+ DN S GYG+V F S
Sbjct: 85 LQEPPTPKETVFIGNVFYDVTREDLKKAM--EKYGVVEKVVLVLDNRGISKGYGYVQFDS 142
Query: 247 KKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
A+ A+ A +LF GR + V QFA
Sbjct: 143 IDAAQRAVDALNMRLFEGRRVTV----QFA 168
>gi|32482367|gb|AAP84376.1| FCA protein [Triticum aestivum]
Length = 735
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 118 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCRFVKYATSEEAERAIR 177
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 178 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 230
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 231 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 275
>gi|241953527|ref|XP_002419485.1| poly uridylate-binding protein, putative; poly(A)+ RNA-binding
protein, putative [Candida dubliniensis CD36]
gi|223642825|emb|CAX43080.1| poly uridylate-binding protein, putative [Candida dubliniensis
CD36]
Length = 497
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-N 140
D A + ++ E S L N+P +++ E I+ LF G + ++ KN+
Sbjct: 51 DEKQVNAASAKEGGREVSNKILYVGNLPKSASEEMIQELFSVDGNPVKTIKVLNDKNKAG 110
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATFNL 197
AF+ + + A ALN L + +KVN+A NP +P FN+
Sbjct: 111 FNYAFIEYDTNEAADMALNTLNGRLVDNVEIKVNWAFQSAAIAGNPNNTEEP----LFNI 166
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
F+ +LS E + LR F S+ + A V++ RS GYGFV+F ++ AE A+
Sbjct: 167 FVGDLSPEVNDEGLRNAF-SKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTM 225
Query: 258 QGKLFMGRPLRV 269
G+ GR +R
Sbjct: 226 NGEWLCGRAIRC 237
>gi|302770591|ref|XP_002968714.1| hypothetical protein SELMODRAFT_27867 [Selaginella moellendorffii]
gi|300163219|gb|EFJ29830.1| hypothetical protein SELMODRAFT_27867 [Selaginella moellendorffii]
Length = 157
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ A +P+T++ +DI + F + G + +I+ + R RGLAF+T D +
Sbjct: 1 KIYAGGMPYTTSEDDIHSYFSECGAIEEIDYTTFPDTGRFRGLAFITF-KVDSLFLFRSK 59
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L S E +T PP PK ++++ NLS++A KDLR+FF +
Sbjct: 60 LSSMECLSQT-----------QAAPP--PKTEGCTSVYVGNLSWDATEKDLRQFF--KRC 104
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ S + R G+G V F+ + E AI Q KLF+ RP+++A
Sbjct: 105 KITSVRLALDKETREFKGFGHVDFEDDESVERAIKLDQ-KLFLNRPIKIA 153
>gi|45201486|ref|NP_987056.1| AGR390Cp [Ashbya gossypii ATCC 10895]
gi|44986420|gb|AAS54880.1| AGR390Cp [Ashbya gossypii ATCC 10895]
gi|374110307|gb|AEY99212.1| FAGR390Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 8/173 (4%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S L N+ T ++ F+ G + ++++ + N AFV P +A
Sbjct: 31 ETSDRILYVGNLDKTINEATLKQYFQVGGPIANVKVLVDKNNEEANYAFVEYRQPRDANV 90
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
A L+ + E +K+N+A F Q TFNLF+ +L+ + + L F
Sbjct: 91 AFQTLDGKQIENNVIKINWA-------FQSQQVSSDDTFNLFVGDLNVDVDDETLSSTF- 142
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E + A V++ RS GYGFVSF ++ A+ A+ A QG GR +RV
Sbjct: 143 KEFPTFIQAHVMWDMQSGRSRGYGFVSFGEQEEAQKAMDAKQGFNLNGRAIRV 195
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 22/195 (11%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T + + LF Q+GTV + + R+RG FV P+ A A+++
Sbjct: 200 TNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDS 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF---------NLFIANLSFEARAKDL 211
L + +TL V A +K+ ++ K F NL++ NLS L
Sbjct: 260 LHGRQVGSKTLFVGKA-LKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTL 318
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK---KVAETAISAF--QGKLFMGRP 266
RE F G +VSA+V+ H+N RS G+GFV F ++ K A+ ++ F GKL +
Sbjct: 319 REIFGRYG-QIVSAKVMRHENG-RSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLV--- 373
Query: 267 LRVAPSRQ--FARLQ 279
+RVA ++ RLQ
Sbjct: 374 VRVAERKEDRLKRLQ 388
>gi|32482061|gb|AAP84388.1| FCA protein [Triticum aestivum]
Length = 737
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 120 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIK 179
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 180 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 232
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GF F SK+ A A+++ G M
Sbjct: 233 PFGH--VEDVYIMKDGMRQSRGCGFAKFSSKEPALAAMNSLSGTYIM 277
>gi|320585953|gb|EFW98632.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Grosmannia clavigera kw1407]
Length = 488
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 9/213 (4%)
Query: 57 TFPITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHED 116
T PI SP Q + +SAAA + E +K L + T +
Sbjct: 47 TNPIPTAITSPL----GGGDQSGLMSPTSAAAYGGRRSAPEPNKRALYVGGLDQRVTEDV 102
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
+R +FE G V ++++ + FV P A A+ NL ++VN+A
Sbjct: 103 LRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQNLNGRRVHQSEIRVNWA 162
Query: 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
+ F++F+ +LS E + L + F S G V A V++ RS
Sbjct: 163 YQSNTT----SKEDTSGHFHIFVGDLSNEVNDEVLTQAFTSFG-SVSEARVMWDMKTGRS 217
Query: 237 AGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
GYGFV+F+ + AE A+S+ G+ R +R
Sbjct: 218 RGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRC 250
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA 157
+ T V P+T T D+ LF+ G V++ +RG AF+ + S + A A
Sbjct: 301 WQTTCYVGNLTPYT-TQNDLVPLFQNFGYVVESRFQ-----SDRGFAFIKLDSHENAAMA 354
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
+ L Y GR LK ++ K K N
Sbjct: 355 ICQLNGYNVNGRPLKCSWGKDKTPN 379
>gi|157138308|ref|XP_001657237.1| RNA binding motif protein 4,lark [Aedes aegypti]
gi|108869514|gb|EAT33739.1| AAEL013982-PA [Aedes aegypti]
Length = 330
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L NV + D+R LFE++GTV++ ++ + FV M + D+ A+ NL
Sbjct: 8 KLFIGNVDEKTQPSDLRPLFEKYGTVVECDVV-------KNYGFVHMENEDQGRDAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISEGW 220
+ Y G+ +KV A+ ++ P A T +F+ NL+ RA +RE F G
Sbjct: 61 DGYVVNGKAIKVEAARNRR---------APNANTTKIFVGNLTDVTRAPQVRELFQKYGT 111
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQT 280
VV +++ + YGFV AI G + G+P++V S +R++
Sbjct: 112 -VVECDIVRN--------YGFVHLDPTGDVNEAIRELNGMMVDGQPMKVQVS--TSRVRP 160
Query: 281 KEGLHSDE 288
K G+ E
Sbjct: 161 KPGMGDPE 168
>gi|356536490|ref|XP_003536770.1| PREDICTED: nucleolar protein 13-like [Glycine max]
Length = 394
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 102/208 (49%), Gaps = 9/208 (4%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAA 157
+ T++ +P+ ST +DIR+ FE GT+ +++ ++ + RG+A +T + A A
Sbjct: 147 TNTKIYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEAAAKRA 206
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLSFEARAKDLREFFI 216
L L+ + G LK+ K + N P+ +N +++ NLS++ ++LR+FF
Sbjct: 207 L-ALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRIYVGNLSWDITEEELRKFFN 265
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
+ ++ S GY V F + + A++ Q LF GRP+R++ +
Sbjct: 266 NS--EITSLRFGMDKETGEFRGYAHVDFGDSQSLKKALALDQNVLF-GRPVRISCA---V 319
Query: 277 RLQTKEGLHSDETSDDLNINAEEADTAD 304
L+ K G H+ T ++ N + + +D
Sbjct: 320 PLKKKTGTHASSTVNEANGDKSSSTGSD 347
>gi|32482104|gb|AAP84404.1| FCA protein [Triticum aestivum]
Length = 738
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 121 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 180
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V Y +K+ LF+A+L+ +A AK++ E F
Sbjct: 181 ALHNQCTIPGAMGPVQVRYTDGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 233
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 234 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 278
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 17/217 (7%)
Query: 63 KKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFE 122
+KV+ + PF+ S ++ + E T + +N+ + ++++A+F
Sbjct: 187 EKVNGMLLEGKKVYVGPFLRRSERSS------DSEVKFTNVFVKNLDEAVSDDEVKAMFA 240
Query: 123 QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK-- 180
+HGTV + + +++G F+ P++A +A+ L + + L V A+ K
Sbjct: 241 EHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAER 300
Query: 181 ----KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP 233
+ F ++ + A + NL++ NL + + LR F S+ + SA+V+ D+
Sbjct: 301 EAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEF-SQFGTITSAKVMV-DSA 358
Query: 234 RRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S G+GFV + S + A A++ G++ G+P+ VA
Sbjct: 359 GKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVA 395
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS---PDEATAALNNLESYEFEGRTLKVNY 175
+F Q G V I + + R+ G A+V S P A AL+ L GR +++ +
Sbjct: 57 VFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERALDQLNYTPLVGRPMRIMW 116
Query: 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235
+ ++P + N+FI NL K L + F + G +++S +V D
Sbjct: 117 SH---RDP----AFRKSGVGNIFIKNLDRSVDNKALHDTFSAFG-NILSCKVA-QDLKGE 167
Query: 236 SAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
S GYGFV F+ + A AI G L G+ + V P
Sbjct: 168 SKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGP 203
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R +Y L +N+ E +R F Q GT+ ++ + S ++RG FV SP+
Sbjct: 314 ERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPE 373
Query: 153 EATAALNNLESYEFEGRTLKVNYAK 177
EAT A+ + +G+ + V A+
Sbjct: 374 EATRAVTEMNGRMIKGKPIYVALAQ 398
>gi|328779568|ref|XP_393451.4| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
mellifera]
Length = 442
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRSFFTRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|301615885|ref|XP_002937390.1| PREDICTED: nucleolin [Xenopus (Silurana) tropicalis]
Length = 705
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N E ++E S+T L +N+P+++T E+++ +FE DI + N+G+A+V
Sbjct: 374 NAENKKERDSRT-LFVKNIPYSTTAEELQEIFE---NAKDIRIPTGKDGANKGIAYVEFS 429
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARA 208
+ EAT AL + E EGR++ V++ K +N VQ L + NLS+ A
Sbjct: 430 NETEATKALEEKQGAEIEGRSIFVDFTGEKSQNSGSRRVQGGDSKV--LVVNNLSYSATE 487
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
LRE F + + N R+ G+ F+ F S + A+ A+ + GR +R
Sbjct: 488 DSLREVFEK------ATSIRIPQNQGRAKGFAFIEFSSVEDAKEAMDSCNNTEIEGRSIR 541
Query: 269 V 269
+
Sbjct: 542 L 542
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 80 FVDSSSAAAVNTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
FVD + + N+ R + ++ LV N+ +++T + +R +FE+ T + I ++
Sbjct: 452 FVDFTGEKSQNSGSRRVQGGDSKVLVVNNLSYSATEDSLREVFEKA-TSIRIP---QNQG 507
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R +G AF+ S ++A A+++ + E EGR++++ +++ + + LF
Sbjct: 508 RAKGFAFIEFSSVEDAKEAMDSCNNTEIEGRSIRLEFSQGSGPQGGRGGSAQ---SKTLF 564
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
+ LS + + L+E F V+A ++ + S G+GFV F
Sbjct: 565 VRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDF 606
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + E LF +G + I L +++G FV + D A A+
Sbjct: 232 TNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEE 291
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + A + NLF+ NL ++ L
Sbjct: 292 LNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKL 351
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F S G + SA+V+ D+ +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 352 EEEFKSFGT-ITSAKVMV-DDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVA 408
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E + F+ GT+ ++ + +++G FV +P+EAT
Sbjct: 331 KYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATK 390
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + + G+ L V A+ K
Sbjct: 391 AITEMNTRMINGKPLYVALAQRK 413
>gi|340723465|ref|XP_003400110.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
terrestris]
Length = 443
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRSFFTRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTL 171
T + ++ +FE++GT+ ++ + ++RG FV PD A A+ L E EG+ +
Sbjct: 175 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 234
Query: 172 KVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDV 222
V A+ K K F ++ + + + NL++ NL + LR F G +
Sbjct: 235 YVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFG-TI 293
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ D RS G+GFV F + + A A++ G++ + +PL VA
Sbjct: 294 TSAKVMMEDG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 339
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
D S GYGFV F++++ A +I G L G+
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHADITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV-- 146
N+ E S +L +VP T++ EDIR LFEQHG V+++ L + + +G FV
Sbjct: 150 NSPDHTECGSFAKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKY 209
Query: 147 -TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
T D A AL+N + ++V +A +++ + LF+ +L+ +
Sbjct: 210 ATSEEADRAIRALHNQHTLPGGIGPIQVRFADGERER-------LGAVEYKLFVGSLNKQ 262
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
A K++ E F G V + D ++S G GFV + S+++A AI+A G M
Sbjct: 263 ATEKEVEEIFSPYGH--VEDVYLMRDEMKQSRGCGFVKYSSREMALAAINALNGIYKM 318
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 15/196 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T ++ F G ++ + +S ++G AFV +PD+A A+
Sbjct: 191 TNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEA 250
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPV-----------QPKPFATFNLFIANLSFEARAK 209
+ +F + L V A+ +KK + Q + NL++ N+ + K
Sbjct: 251 MNGLQFGSKYLYV--ARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDK 308
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+LR+ F S G +++ + D+ S G+GFV F + + A A+ +F G F +PL +
Sbjct: 309 ELRDLFSSCG--TITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYI 366
Query: 270 APSRQFARLQTKEGLH 285
A +++ +T+ LH
Sbjct: 367 AIAQRKKERKTQLNLH 382
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 92 EQREEE---YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+R+E+ Y + L +N+ T +++R LF GT+ +++ K ++G FV
Sbjct: 282 EKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCF 341
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+P+EA A+ + F + L + A+ KK+
Sbjct: 342 SNPEEANKAVMSFNGCTFHRKPLYIAIAQRKKE 374
>gi|32482369|gb|AAP84377.1| FCA protein [Triticum aestivum]
Length = 727
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 114 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGRCFVKYATSEEAERAIR 173
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +++ LF+A+L+ +A AK++ E F
Sbjct: 174 ALHNQCTIPGAMGPVQVRYADGERER-------HGSIEHKLFVASLNKQATAKEIEEIFA 226
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 227 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 271
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 4/194 (2%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
+E T + +N+ E++R L +G + ++ + K++++G F +PDEA
Sbjct: 181 QELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAK 240
Query: 156 AALNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
+ F G+ + V A K++++ + NL+I N+ + LR
Sbjct: 241 NCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFETKYQGVNLYIKNIDDSIDSDKLRS 300
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA-PS 272
F + G + SA+V+ D S G+GFV + + A A++ G++ +PL VA
Sbjct: 301 TFAAYGT-ITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVAFAQ 359
Query: 273 RQFARLQTKEGLHS 286
R+ R Q E H+
Sbjct: 360 RKEIRRQHLEAQHN 373
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 101/211 (47%), Gaps = 13/211 (6%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL--AFVTMGSPDEAT 155
+S + L ++ T + +F Q G V ++ + + R R L A+V +P +A
Sbjct: 5 FSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTR-RSLNYAYVNYHNPADAE 63
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
AL+ L + +G+ ++ +++ ++P + N+FI NL K L + F
Sbjct: 64 RALDTLNNTLVKGKACRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSVDHKALFDTF 116
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF 275
+ G +++S +V+ D S G+GFV ++S+ A+ AI G + + + V P +
Sbjct: 117 SAFG-NILSCKVV-TDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSS 174
Query: 276 A-RLQTKEGLHSDETSDDLNINAEEADTADV 305
R QT+E +++ +L+ + E + D+
Sbjct: 175 KERGQTQELKYTNVYVKNLSEDVNEEELRDL 205
>gi|167523433|ref|XP_001746053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775324|gb|EDQ88948.1| predicted protein [Monosiga brevicollis MX1]
Length = 635
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 25/215 (11%)
Query: 47 PLSSSPFHAYTFPITPKKVSPFVFHFSATTQDPFVDSSS--AAAVNTEQREEEYSKTRLV 104
P S++ H Y P F +D D+SS + N + + SKT L+
Sbjct: 143 PTSNATHHGYDIP-----------PFKGKDEDDAGDASSPTSNGSNGQFNQAPVSKTNLI 191
Query: 105 AQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLES 163
+P + + +D+RALF +G + +L + ++ G FV + AT A + L
Sbjct: 192 INYIPNSFSQDDLRALFGAYGALKSCKLMYDRATGKSLGYGFVEYEDENGATKAADALNE 251
Query: 164 YEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
++ E + LKV++A+ NL+I L + L + F S G D++
Sbjct: 252 FQIENKRLKVSFARPSSST---------ITNANLYIKGLPTTINEQSLTDMFSSCG-DII 301
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
S V++ N G GFV F K AE AI F
Sbjct: 302 SVRVLYDRN-GTPKGVGFVRFDQHKEAENAIQRFN 335
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNL 161
L N+P T +D+ AL Q+G V + + + ++G AF+T+ + +AT + NL
Sbjct: 443 LFVYNLPPACTEQDLTALVGQYGNVRSASIVRYKETGSSKGYAFITVATNADATNVIRNL 502
Query: 162 ESYEFEGRTLKVNYAKIKKK 181
+ + GR L+V++ K ++
Sbjct: 503 NNMRYNGRDLQVSFKKQSRR 522
>gi|134083605|emb|CAL00520.1| unnamed protein product [Aspergillus niger]
Length = 381
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
NV + T ED++ E++G V + L + ++ ++G +V S D A A++ L F
Sbjct: 202 NVFYDVTREDLKKAMEKYGVVEKVVLVLDNRGISKGYGYVQFDSIDAAQRAVDALNMRLF 261
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + V +A+ N + Q T L+I NL FE +DL E F + +VV
Sbjct: 262 EGRRVTVQFAQ---NNVYHRRQLN-APTRTLYIGNLPFEMTDRDLNELF-KDVQNVVDIR 316
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
V ++ G+ F S A+ A++ + KL GR LR+ S+ +R
Sbjct: 317 VAVDRRTGQARGFAHAEFVSTSSAKAAMAILENKLPYGRRLRLDYSKATSR 367
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+Q P +FI N+ ++ +DL++ E + VV V+ DN S GYG+V F S
Sbjct: 188 LQEPPTPKETVFIGNVFYDVTREDLKKAM--EKYGVVEKVVLVLDNRGISKGYGYVQFDS 245
Query: 247 KKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
A+ A+ A +LF GR + V QFA
Sbjct: 246 IDAAQRAVDALNMRLFEGRRVTV----QFA 271
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 90 NTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
N R + + TR L N+P+ T D+ LF+ V+DI +++ + + RG A
Sbjct: 274 NVYHRRQLNAPTRTLYIGNLPFEMTDRDLNELFKDVQNVVDIRVAVDRRTGQARGFAHAE 333
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAK 177
S A AA+ LE+ GR L+++Y+K
Sbjct: 334 FVSTSSAKAAMAILENKLPYGRRLRLDYSK 363
>gi|350406107|ref|XP_003487656.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
impatiens]
Length = 426
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRSFFTRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|325091401|gb|EGC44711.1| nucleic acid-binding protein [Ajellomyces capsulatus H88]
Length = 359
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 13/201 (6%)
Query: 90 NTEQREEEYSKTR----LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
N QRE E + + N+ + T ED++ + GT+ + + S+ +RG A+
Sbjct: 136 NESQRERELLPIKPNETIYVGNLFFEVTAEDLKRDMAKFGTIYSVRIVYDSRGMSRGFAY 195
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
V S + A AA++ + +EGR + VNY+ +N P T LFI NLSFE
Sbjct: 196 VQFDSVEAAEAAISEMNMSIYEGRRIVVNYS---TRNSAAPRTRASEPTKTLFIGNLSFE 252
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
++L + F + +V V R G+ F + A+ A+ + K GR
Sbjct: 253 MTDRELNDLF-RDIPNVDDVRVSVDKRTGRPRGFAHADFLDVESAKAAMEILKEKAPYGR 311
Query: 266 PLRVAPSRQFARLQTKEGLHS 286
PLR+ S L TK+ L S
Sbjct: 312 PLRLDYS-----LNTKDMLAS 327
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T T ++I++LF G V +L ++ G FV P +A A
Sbjct: 21 SKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKA 80
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ P Q A NL+++ L +DL F +
Sbjct: 81 INTLNGLRLQAKTIKVSYAR-------PSSQAIKDA--NLYVSGLPKTMTQQDLEGLFEA 131
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
G ++++ ++F +S G GFV F + AE AI+ G + G
Sbjct: 132 HGR-IITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKG 177
>gi|297800520|ref|XP_002868144.1| hypothetical protein ARALYDRAFT_493257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313980|gb|EFH44403.1| hypothetical protein ARALYDRAFT_493257 [Arabidopsis lyrata subsp.
lyrata]
Length = 547
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEA 154
S +L +VP T+ E++R FE+HG VL++ L + + +G FV T D A
Sbjct: 125 STVKLFVGSVPRTAIEEEVRPFFEKHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 184
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT--FNLFIANLSFEARAKDLR 212
AL+N + ++V YA +++ T F LF+ +L+ +A K++
Sbjct: 185 IRALHNQITLPGGTGPVQVRYADGERER---------IGTLEFKLFVGSLNKQATEKEVE 235
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
E F+ G V + D R+S G GFV + SK+ A AI G M
Sbjct: 236 EIFLQFGR--VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTM 284
>gi|32482076|gb|AAP84394.1| FCA protein [Triticum aestivum]
Length = 734
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 117 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 176
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 177 ALHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 229
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A+++ G M
Sbjct: 230 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPPLAAMNSLSGTYIM 274
>gi|317036295|ref|XP_001398046.2| C6 transcription factor [Aspergillus niger CBS 513.88]
Length = 1095
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
NV + T ED++ E++G V + L + ++ ++G +V S D A A++ L F
Sbjct: 916 NVFYDVTREDLKKAMEKYGVVEKVVLVLDNRGISKGYGYVQFDSIDAAQRAVDALNMRLF 975
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + V +A+ N + Q T L+I NL FE +DL E F + +VV
Sbjct: 976 EGRRVTVQFAQ---NNVYHRRQLNA-PTRTLYIGNLPFEMTDRDLNELF-KDVQNVVDIR 1030
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
V ++ G+ F S A+ A++ + KL GR LR+ S+ +R
Sbjct: 1031 VAVDRRTGQARGFAHAEFVSTSSAKAAMAILENKLPYGRRLRLDYSKATSR 1081
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+Q P +FI N+ ++ +DL++ E + VV V+ DN S GYG+V F S
Sbjct: 902 LQEPPTPKETVFIGNVFYDVTREDLKKAM--EKYGVVEKVVLVLDNRGISKGYGYVQFDS 959
Query: 247 KKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
A+ A+ A +LF GR + V QFA+
Sbjct: 960 IDAAQRAVDALNMRLFEGRRVTV----QFAQ 986
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 90 NTEQREEEYSKTR-LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
N R + + TR L N+P+ T D+ LF+ V+DI +++ + + RG A
Sbjct: 988 NVYHRRQLNAPTRTLYIGNLPFEMTDRDLNELFKDVQNVVDIRVAVDRRTGQARGFAHAE 1047
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAK 177
S A AA+ LE+ GR L+++Y+K
Sbjct: 1048 FVSTSSAKAAMAILENKLPYGRRLRLDYSK 1077
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E ++T L +N+P+ T +DIR +FE L++ + M+ +RG+A+V +
Sbjct: 361 ENKKERDART-LFLKNLPYRITEDDIREVFE---NALEVRIVMNKDGNSRGMAYVEFKTE 416
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
EA AL + E EGR + +++ K + + + + L + NLS+ A + L
Sbjct: 417 AEADKALEEKQGTEIEGRAVVIDFTGEKSQQ-----ENQKGESTTLIVNNLSYAATEETL 471
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+E F S+ + +N R GY FV F + + A+ A+++ GR +R+
Sbjct: 472 QEVFKK-----ASSIRVPQNNQGRPKGYAFVDFATAEDAKEALNSLNNTEIEGRTIRL 524
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
++Q ++ T L+ N+ + +T E ++ +F++ + I + +++ R +G AFV +
Sbjct: 445 SQQENQKGESTTLIVNNLSYAATEETLQEVFKKASS---IRVPQNNQGRPKGYAFVDFAT 501
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEA 206
++A ALN+L + E EGRT+++ ++ + N + LF+ LS +
Sbjct: 502 AEDAKEALNSLNNTEIEGRTIRLEFSSPSWQKGNTNARGGGGGFGQQSKTLFVRGLSEDT 561
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ LRE F EG +SA ++ + S G+GFV F S + A+ A A +
Sbjct: 562 TEETLRESF--EGS--ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 609
>gi|380017405|ref|XP_003692647.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
florea]
Length = 439
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRSFFTRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|393239414|gb|EJD46946.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 769
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGS 150
++ E++ RL +N+ ++ T D+++ F HGT++ + + + + N+ ++GLAFVT +
Sbjct: 237 DEEEQDTPSARLFVRNLAFSCTESDLKSHFSAHGTLVQVHIPLDTANKTSKGLAFVTYST 296
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
PDEA+AA L+ F+GR L + A I+++ P P PK
Sbjct: 297 PDEASAAREALDGTSFQGRLLHILPA-IERRKPAAPADPK 335
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHG-----------TVLDIELSMHSKNRN--RGL 143
+ S T ++ +N+P+ +T + LF HG T+ +E + + R+ +G+
Sbjct: 428 QRSSTIILVKNIPYGTTSAQLTELFAPHGALVRLLIPPAGTIAVVEFAHADEARSAFKGV 487
Query: 144 AFVTMGSPDEATAALNNLESYEF-----EGRTLKVNYAKIKKKNPFPPVQP----KPFAT 194
A+ +GS A L F +G+ K ++++K P V P + A
Sbjct: 488 AYKRLGS---AVVYLEWAPQGMFRPDAPKGKEDKGGVVRVEEKE-VPVVAPAEEGEVKAG 543
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR-----SAGYGFVSFKSKKV 249
LF+ NL+F + LR ++ V A V +P+R S GYGFV F +
Sbjct: 544 TTLFVKNLAFSTNSDALRAV-VARMQGFVFARVQMKPDPKRLGEMLSMGYGFVGFATADD 602
Query: 250 AETAISAFQGKLFMGRPLRV 269
A+ A+ QG + G LRV
Sbjct: 603 AKRALEGLQGYILDGHELRV 622
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+++ +NVP+ +T +D+RALF HG + + L +R+RG AF+ S EA A L
Sbjct: 648 KMIVKNVPFEATRKDLRALFGAHGHLKSVRLPKKFNSRSRGFAFLEFVSHQEAEHAFATL 707
Query: 162 ESYEFEGRTLKVNYA 176
F GR L + +A
Sbjct: 708 RHTHFLGRHLVLEWA 722
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA---TFNLF 198
G FV + D+A AL L+ Y +G L+V +A +++ + + +
Sbjct: 591 GYGFVGFATADDAKRALEGLQGYILDGHELRVKFAGRGREDEAQDSRDGAIGGKKSAKMI 650
Query: 199 IANLSFEARAKDLREFFISEG-WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
+ N+ FEA KDLR F + G V F+ RS G+ F+ F S + AE A +
Sbjct: 651 VKNVPFEATRKDLRALFGAHGHLKSVRLPKKFNS---RSRGFAFLEFVSHQEAEHAFATL 707
Query: 258 QGKLFMGRPL 267
+ F+GR L
Sbjct: 708 RHTHFLGRHL 717
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF-------ATFNLFIANLSFEARAK 209
AL++ + F+ + + AK K K+ P +PKP + LF+ NL+F
Sbjct: 202 ALDDEDHKAFQQSDDEDDAAKSKAKSK-PAEEPKPADEEEQDTPSARLFVRNLAFSCTES 260
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
DL+ F + G +V + + S G FV++ + A A A G F GR L +
Sbjct: 261 DLKSHFSAHG-TLVQVHIPLDTANKTSKGLAFVTYSTPDEASAAREALDGTSFQGRLLHI 319
Query: 270 APS 272
P+
Sbjct: 320 LPA 322
>gi|125542191|gb|EAY88330.1| hypothetical protein OsI_09789 [Oryza sativa Indica Group]
Length = 252
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T +IR LFE+ G + ++LS + N RGLAFV+ S + A
Sbjct: 70 YETGKVVASGLPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFESNEVAMK 129
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+ F K + ++ NL ++ D
Sbjct: 130 SL-ELDGFKIGNRFMRVERCRLAAGSKRKRTVEFQTDPKKADGCLSAYVGNLKWDVTETD 188
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGF--VSFKSKKVAETAISAFQGKLFMGRPLR 268
LR+FF S + + + F N R GF V F+ + E A+ Q +L GRP++
Sbjct: 189 LRDFFKS----LKISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL-RGRPIK 243
Query: 269 VA 270
++
Sbjct: 244 IS 245
>gi|32482057|gb|AAP84375.1| mutant FCA-D1 [Triticum aestivum]
Length = 284
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 125 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 184
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V YA +K+ ++ K LF+A+L+ +A AK++ E F
Sbjct: 185 ALHNQCTIPGAMGPVQVRYADGEKER-HGSIEHK------LFVASLNKQATAKEIEEVFA 237
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 238 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 282
>gi|240275573|gb|EER39087.1| nucleic acid-binding protein [Ajellomyces capsulatus H143]
Length = 332
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 13/201 (6%)
Query: 90 NTEQREEEYSKTR----LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
N QRE E + + N+ + T ED++ + GT+ + + S+ +RG A+
Sbjct: 109 NESQRERELLPIKPNETIYVGNLFFEVTAEDLKRDMAKFGTIYSVRIVYDSRGMSRGFAY 168
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
V S + A AA++ + +EGR + VNY+ +N P T LFI NLSFE
Sbjct: 169 VQFDSVEAAEAAISEMNMSIYEGRRIVVNYS---TRNSAAPRTRASEPTKTLFIGNLSFE 225
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
++L + F + +V V R G+ F + A+ A+ + K GR
Sbjct: 226 MTDRELNDLF-RDIPNVDDVRVSVDKRTGRPRGFAHADFLDVESAKAAMEILKEKAPYGR 284
Query: 266 PLRVAPSRQFARLQTKEGLHS 286
PLR+ S L TK+ L S
Sbjct: 285 PLRLDYS-----LNTKDMLAS 300
>gi|315046346|ref|XP_003172548.1| hypothetical protein MGYG_05139 [Arthroderma gypseum CBS 118893]
gi|311342934|gb|EFR02137.1| hypothetical protein MGYG_05139 [Arthroderma gypseum CBS 118893]
Length = 304
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K + N+ + T D++ ++G VL + ++ +RG +V S +EA A++
Sbjct: 93 KATIYVGNILFDITAADLKEFASKYGKVLGTRIIYDTRGLSRGFGYVRFQSVEEAKKAID 152
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF--IS 217
+ E+EGR L VN+A+I+ + P Q +P T +F+ N++ + +DL F I
Sbjct: 153 EMHLSEYEGRKLSVNFAQIELREEQPQKQMEP--TRTIFVGNIAHQITERDLHAIFDDIP 210
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ---GKLFMGRPLRV 269
+DV A PR GFV + V E+AI+ F+ G+ GRPLR+
Sbjct: 211 NVFDVRVAVDRRTGMPR-----GFVHAEFTDV-ESAIAGFEILKGQAPYGRPLRL 259
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P P +++ N+ F+ A DL+EF + + V I +D S G+G+V
Sbjct: 83 LPPTRPDPEPKATIYVGNILFDITAADLKEF--ASKYGKVLGTRIIYDTRGLSRGFGYVR 140
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
F+S + A+ AI + GR L V FA+++ +E
Sbjct: 141 FQSVEEAKKAIDEMHLSEYEGRKLSV----NFAQIELRE 175
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W + + F+ VL ++ R+RG +V S ++A AL
Sbjct: 262 LFVGRLAWAVDDQRLLEEFQSLDGVLSARVMTERETGRSRGYGYVDFESKEQAQKALEQF 321
Query: 162 ESYEFEGRTLKVNYAKIKKKNPF--------------PPVQPKPFATFNLFIANLSFEAR 207
+ E EGR + ++ + K + P P QP + LF+ NLSF+A
Sbjct: 322 QGREIEGRPINLDMSTSKPQTPSQNQKFQDRAKKYGDTPSQP----SDTLFVGNLSFQAD 377
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
L+EFF G V+ + H + G+G+V F S A+ A+ A G+ GRP+
Sbjct: 378 RDTLKEFFEQHGT-VLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEALNGEYIAGRPV 436
Query: 268 RV 269
R+
Sbjct: 437 RL 438
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 185 PPVQPKPFATFNLFIANLSFEARAKDLREFFIS-EGWDVVSAEVIFHDNPRRSAGYGFVS 243
P +PK AT LF+ L++ + L E F S +G V+SA V+ RS GYG+V
Sbjct: 252 PSKKPKEVAT--LFVGRLAWAVDDQRLLEEFQSLDG--VLSARVMTERETGRSRGYGYVD 307
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRV 269
F+SK+ A+ A+ FQG+ GRP+ +
Sbjct: 308 FESKEQAQKALEQFQGREIEGRPINL 333
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + + ++ FEQHGTVL I + H ++ +G +V GS DEA AAL L
Sbjct: 367 LFVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEAL 426
Query: 162 ESYEFEGRTLKVNYA 176
GR ++++++
Sbjct: 427 NGEYIAGRPVRLDFS 441
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 33/212 (15%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P T+T +D++ LF HGT+ + S +++ FV + D A AA+
Sbjct: 213 TNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEK 272
Query: 161 LESYEF-EGRTLKVNYAKIK--------------KKNPFPPVQPKPFATFNLFIANLSFE 205
L+ + +TL V A+ K +K+ F +Q NL+I NL
Sbjct: 273 LDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQ-----GANLYIKNLDDH 327
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
+ L+E F SE + S +V+ D S G GFV+F S A A++ GK+ +
Sbjct: 328 IDDEKLKELF-SEYGTITSCKVML-DQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRK 385
Query: 266 PLRVAPSR-----------QFARLQTKEGLHS 286
PL VA ++ QFA+++ G+ S
Sbjct: 386 PLYVAVAQRKEERKARLQAQFAQIRAAGGISS 417
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ I + ++ ++ G A+V S +A A+ +L G+ +++ +
Sbjct: 54 LFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMIS-- 111
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P ++ +A N+FI NL K LR+ F + G V+S +V N +S G
Sbjct: 112 ---NRDPSIRKSGYA--NVFIKNLDLSIDNKALRDTFAAFGT-VLSCKVAVDSN-GQSKG 164
Query: 239 YGFVSFKSKKVAETAISAFQGKLF 262
YGFV F+S++ AE +I G L
Sbjct: 165 YGFVQFESEESAEISIEKLNGMLL 188
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E+ L +N+ E ++ LF ++GT+ ++ + ++G FV SPDE
Sbjct: 310 RFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDE 369
Query: 154 ATAALNNLESYEFEGR 169
AT ALN + + +GR
Sbjct: 370 ATKALNEMNG-KMKGR 384
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 15/189 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T+T +D++ +F + GT+ + + R++ FV SPDEA A+ +L +
Sbjct: 309 KNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKK 368
Query: 166 FE------GRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARAKDLREFFI 216
F GR K + +++ K F + NL++ NL + LRE F
Sbjct: 369 FSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFA 428
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR--- 273
G +++ + D+ S G GFV+FKS A A++ K+ +PL VA ++
Sbjct: 429 EFG--TITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKE 486
Query: 274 -QFARLQTK 281
+ ARLQ +
Sbjct: 487 DRKARLQAQ 495
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F Q G V+ + + +R G A+V +P +A AL L GR +++ Y+
Sbjct: 144 VFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYS-- 201
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P ++ T N+FI NL K L + F G +++S +V D S G
Sbjct: 202 ---NRDPSLRKS--GTANIFIKNLDKSIDNKALHDTFCVFG-NILSCKVA-TDPAGESKG 254
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
YGFV ++ + A AI G L + + V P F R Q ++
Sbjct: 255 YGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP---FVRKQERD 295
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N ++ ++Y T L +N+ T E +R LF + GT+ ++ S +RG FV
Sbjct: 396 NLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFK 455
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
S D+A+ AL + + + L V A+ K+
Sbjct: 456 SADDASRALAEMNNKMVGNKPLYVALAQRKE 486
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S ++RG FV+ ++A A++ + E G+ + V
Sbjct: 107 NLKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGR 166
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR+ F G + SA+
Sbjct: 167 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSAK 225
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V+ D RS G+GFV F S++ A A++ G++ +PL VA
Sbjct: 226 VMLEDG--RSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYVA 267
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 12 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGLLLNDRKVF 70
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E +L+E F S+ +S +V+ D
Sbjct: 71 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVM-RD 126
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ +S G+GFVS++ + A A+ GK G+ + V
Sbjct: 127 SSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVG 165
>gi|383857431|ref|XP_003704208.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like
[Megachile rotundata]
Length = 443
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V TE ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKTEMDDDE--KGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPANVPLVLQN-GPHQLDGRTIDP-----KPCNPRTQQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + ++
Sbjct: 115 TETDLRTFFNRYG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVA 162
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 33/212 (15%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P T+T +D++ LF HGT+ + S +++ FV + D A AA+
Sbjct: 213 TNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEK 272
Query: 161 LESYEF-EGRTLKVNYAKIK--------------KKNPFPPVQPKPFATFNLFIANLSFE 205
L+ + +TL V A+ K +K+ F +Q NL+I NL
Sbjct: 273 LDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQ-----GANLYIKNLDDH 327
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
+ L+E F SE + S +V+ D S G GFV+F S A A++ GK+ +
Sbjct: 328 IDDEKLKELF-SEYGTITSCKVML-DQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRK 385
Query: 266 PLRVAPSR-----------QFARLQTKEGLHS 286
PL VA ++ QFA+++ G+ S
Sbjct: 386 PLYVAVAQRKEERKARLQAQFAQIRAAGGISS 417
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ I + ++ ++ G A+V S +A A+ +L G+ +++ +
Sbjct: 54 LFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMIS-- 111
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P ++ +A N+FI NL K LR+ F + G V+S +V N +S G
Sbjct: 112 ---NRDPSIRKSGYA--NVFIKNLDLSIDNKALRDTFAAFGT-VLSCKVAVDSN-GQSKG 164
Query: 239 YGFVSFKSKKVAETAISAFQGKLF 262
YGFV F+S++ AE +I G L
Sbjct: 165 YGFVQFESEESAEISIEKLNGMLL 188
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E+ L +N+ E ++ LF ++GT+ ++ + ++G FV SPDE
Sbjct: 310 RFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDE 369
Query: 154 ATAALNNLESYEFEGR 169
AT ALN + + +GR
Sbjct: 370 ATKALNEMNG-KMKGR 384
>gi|358372661|dbj|GAA89263.1| C6 transcription factor [Aspergillus kawachii IFO 4308]
Length = 1068
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T ED++ E++G V + L + ++ ++G +V S D A A++ L F
Sbjct: 889 NIFYDVTREDLKKAMEKYGVVEKVVLVLDNRGISKGYGYVQFDSIDAAQRAVDALNLRLF 948
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + V +A+ N + Q T L+I NL FE +DL E F + +VV
Sbjct: 949 EGRRVTVQFAQ---NNVYHRRQLNA-PTRTLYIGNLPFEMTDRDLNELF-KDVQNVVDIR 1003
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
V ++ G+ F S A+ A++ + KL GR LR+ S+ +R
Sbjct: 1004 VAVDRRTGQARGFAHAEFVSTSSAKAAMAVLENKLPYGRRLRLDYSKATSR 1054
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+Q P +FI N+ ++ +DL++ E + VV V+ DN S GYG+V F S
Sbjct: 875 LQEPPTPKETVFIGNIFYDVTREDLKKAM--EKYGVVEKVVLVLDNRGISKGYGYVQFDS 932
Query: 247 KKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277
A+ A+ A +LF GR + V QFA+
Sbjct: 933 IDAAQRAVDALNLRLFEGRRVTV----QFAQ 959
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
+ + +FE+ G L +++ R++G FV ++A A++N+ E GR +
Sbjct: 304 DRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAG 363
Query: 175 YAKIKKKNP------FPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K + F ++ + NL+I NL + ++LR+ F S G + SA
Sbjct: 364 RAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFG-TITSA 422
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ ++ RS G+GFV F + + A TA++ G+L +PL VA
Sbjct: 423 KVMMNNG--RSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVA 465
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 6/182 (3%)
Query: 105 AQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY 164
+N+ + ++ + F G +L ++ + N ++G FV + A A+ +
Sbjct: 202 VKNLEKSINNKSLYDAFSSFGNILSCKV-ITDDNGSKGYGFVHFEHRESAERAIQKMNGI 260
Query: 165 EFEGRTLKVNYAKIKK-KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ V + K +K + Q + F N++I N + L + F E +
Sbjct: 261 LLNDLKIFVGHFKSRKDRESELGAQTREFT--NVYIKNFGEDMDEDRLSKIF--EKFGPT 316
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEG 283
+ + D+ RS G+GFV+F+ + A+ AI GK GR + +++ QT+
Sbjct: 317 LSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQKKLERQTQLQ 376
Query: 284 LH 285
H
Sbjct: 377 RH 378
>gi|345493621|ref|XP_003427111.1| PREDICTED: ELAV-like protein 3-like isoform 3 [Nasonia vitripennis]
gi|345493623|ref|XP_001603257.2| PREDICTED: ELAV-like protein 3-like isoform 1 [Nasonia vitripennis]
Length = 349
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + N Q +E SKT L+ +P T T E+IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGS--NLGQSSQEESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
A NL+++ L +DL F G + S I DN P S G
Sbjct: 114 A--NLYVSGLPKNMTQQDLENLFSPYGRIITSR--ILCDNITVRQFVTGGGDNLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMG 264
GF+ F + AE AI G + G
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTIPKG 195
>gi|224112839|ref|XP_002316306.1| predicted protein [Populus trichocarpa]
gi|222865346|gb|EEF02477.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 12/200 (6%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLA 144
AA V E + E R+ +P+ ST +DIR+ FE GT+ +++ ++ + RG+A
Sbjct: 180 AAKVAGESKISEDIADRVYVGGIPYYSTEDDIRSFFEGCGTITEVDCMTFPDSGKFRGIA 239
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN-LFIANLS 203
++ + A AL +L+ + G LK+ K K N P P +N +++ NLS
Sbjct: 240 IISFKTEAAAKRAL-DLDGSDMGGFYLKIQPYKTTKVNKEPNFAPGIVEGYNRIYVGNLS 298
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA--GYGFVSFKSKKVAETAISAFQGKL 261
++ DL++FF D + + F + GYG V F A+ Q ++
Sbjct: 299 WDITEDDLKKFF----SDCKISSIRFGMDKETGEFRGYGHVDFSDNDSLVKALKLDQ-RI 353
Query: 262 FMGRPLRVAPS--RQFARLQ 279
GRP++++ + ++ +LQ
Sbjct: 354 VCGRPIKISCAVPKKGGKLQ 373
>gi|327305247|ref|XP_003237315.1| nucleic acid-binding protein [Trichophyton rubrum CBS 118892]
gi|326460313|gb|EGD85766.1| nucleic acid-binding protein [Trichophyton rubrum CBS 118892]
Length = 293
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E K + N+ + T D++ ++G VL + S+ +RG +V S +E
Sbjct: 75 RPEPQPKATVYVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVKFESVEE 134
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A++ + E+EGR L VN+A++ ++ P + +P T +F+ N++ + +DL
Sbjct: 135 AKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKMEP--TRTIFVGNIAHQVTDRDLHA 192
Query: 214 FF--ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F I +DV A PR G+ F + A +G+ GRPLR+
Sbjct: 193 LFDDIPNVFDVRVAVDRRTGMPR---GFAHAEFTDVESAIAGFEMLKGQAPYGRPLRL 247
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P+P +++ N+ F+ A DL+E+ + + V I +D+ S G+G+V
Sbjct: 71 LPPSRPEPQPKATVYVGNILFDITAADLKEY--ASKYGKVLGTRIIYDSRGLSRGFGYVK 128
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRV 269
F+S + A+ AI + GR L V
Sbjct: 129 FESVEEAKKAIDEMHLSEYEGRKLSV 154
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 105/245 (42%), Gaps = 40/245 (16%)
Query: 70 FHFSATTQDPFVDSS----SAAAVNTEQREEE-----------YS-KTRLVAQNVPWTST 113
F FS+ + P + S S AV++E +EE YS RL ++P++
Sbjct: 37 FSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGSLPFSVD 96
Query: 114 HEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
+ +FE G V +E+ S R+RG FVTM S E AA L Y +GR L+
Sbjct: 97 SAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELR 156
Query: 173 VNYAKIK---------KKNP--------FPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
VN +NP PP + + NL++ L F
Sbjct: 157 VNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLF 216
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS--- 272
+G V+ A+VI+ RS G+GFV+F S ++AI G GR +RV+P+
Sbjct: 217 GEQGQ-VLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPADSR 275
Query: 273 --RQF 275
RQF
Sbjct: 276 PKRQF 280
>gi|60459259|gb|AAX20016.1| FCA gamma [Pisum sativum]
Length = 743
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAA 157
+L +VP T+T EDIR LFE+HG V+++ L K +++G F+ T D+A A
Sbjct: 92 KLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 151
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +++ + LF+ +L+ +A K++ E F
Sbjct: 152 LHNQHTLPGGVGPIQVRYADGERER-------LGAVEYKLFVGSLNKQALVKEVEEVFSK 204
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V + D+ ++S G GFV + + +A AI+ G M
Sbjct: 205 YG--RVEDVYLMRDDKKQSRGCGFVKYSHRDMALAAINGLNGIYTM 248
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T+T +D++ +F + G + + + R++ FV SPDEA A+ +L +
Sbjct: 216 KNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKK 275
Query: 166 FE------GRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARAKDLREFFI 216
F GR K + +I+ K F + NL++ NL + LRE F
Sbjct: 276 FSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFA 335
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR--- 273
G +++ + D+ S G GFV+FKS A A++ K+ +PL VA ++
Sbjct: 336 EFG--TITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKE 393
Query: 274 -QFARLQTK 281
+ ARLQ +
Sbjct: 394 DRKARLQAQ 402
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F Q G V+ + + +R G A+V +P +A AL L GR +++ Y+
Sbjct: 51 VFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYS-- 108
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P ++ T N+FI NL K L + F G +++S +V D S G
Sbjct: 109 ---NRDPSLRKS--GTANIFIKNLDKSIDNKALYDTFCVFG-NILSCKVA-TDPAGESKG 161
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
YGFV ++ + A AI G L + + V P F R Q ++
Sbjct: 162 YGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP---FVRKQERD 202
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N ++ ++Y T L +N+ T E +R LF + GT+ ++ S +RG FV
Sbjct: 303 NLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFK 362
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
S D+A+ AL + + + L V A+ K+
Sbjct: 363 SADDASRALAEMNNKMVGNKPLYVALAQRKE 393
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
++ AAAV Q+ E + +PW++T ++++ F G V + + + R+
Sbjct: 235 ENGDAAAVANPQKTLE-----IFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQN-GRSS 288
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G AFVT + + A AAL ++ +F GR +K+ A+ KKN F KP ++FI N
Sbjct: 289 GTAFVTFATSEAAEAALA-MDGQDFGGRWMKIRTAE--KKNMF---DEKPEGCTSVFIGN 342
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
LS++ +RE F E +++S + G+G V F S + + A+ G
Sbjct: 343 LSWDVDENTVRETF-GECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAVK-LAGSY 400
Query: 262 FMGRPLRV 269
GR +RV
Sbjct: 401 VNGRAIRV 408
>gi|125977312|ref|XP_001352689.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
gi|54641438|gb|EAL30188.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ + ++RALFE++GTV++ ++ KN FV M + + A+ NL
Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDV---VKN----YGFVHMETEQQGRDAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
Y +KV AK ++ P T +F+ NL+ + RA ++RE F G
Sbjct: 61 NGYVLNDNAIKVEAAKSRRAPNTP--------TTKIFVGNLTDKTRAPEVRELFQKYGT- 111
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ + YGFV + AI G++ G+PL+V S +R++ K
Sbjct: 112 VVECDIVRN--------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS--TSRVRPK 161
Query: 282 EGLHSDE 288
G+ E
Sbjct: 162 PGMGDPE 168
>gi|170045947|ref|XP_001850551.1| single-stranded DNA-binding protein mssp-1 [Culex quinquefasciatus]
gi|167868784|gb|EDS32167.1| single-stranded DNA-binding protein mssp-1 [Culex quinquefasciatus]
Length = 416
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTM 148
NT Q+ E+ SKT L + + +T +D+ + Q+GT++ + + + N+ +G FV
Sbjct: 59 NTPQQTEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDF 118
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
SP A A+ L++ + ++ AK ++++P NL+IANL +
Sbjct: 119 ESPACAEGAVKGLQA-----KGIQAQMAKQQEQDP-----------TNLYIANLPLNYKE 162
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG--RP 266
D+ E +S+ V+S I D +S G GF +S++ E I F G G P
Sbjct: 163 TDV-ENLLSKYGQVISTR-ILRDQNAQSKGVGFARMESREKCEQIIQIFNGTQLQGAKEP 220
Query: 267 LRV 269
L V
Sbjct: 221 LLV 223
>gi|68478681|ref|XP_716609.1| hypothetical protein CaO19.7368 [Candida albicans SC5314]
gi|46438281|gb|EAK97614.1| hypothetical protein CaO19.7368 [Candida albicans SC5314]
gi|238880985|gb|EEQ44623.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 510
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D A + ++ E S L N+P +++ E I+ LF G + ++ KN+
Sbjct: 60 DEKQVNAASAKEGGREVSNKILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAG 119
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATFNL 197
AF+ + + A ALN L + +KVN+A NP +P FN+
Sbjct: 120 FNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEEP----LFNI 175
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
F+ +LS E + LR F S+ + A V++ RS GYGFV+F ++ AE A+
Sbjct: 176 FVGDLSPEVNDEGLRNAF-SKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTM 234
Query: 258 QGKLFMGRPLRV 269
G+ GR +R
Sbjct: 235 NGEWLCGRAIRC 246
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVSTKPLYVA 366
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSAFGNILSCKV-VCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + K LRE F + G + +S +V+ D+ RS G+G
Sbjct: 178 ERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG-NTLSVKVMM-DDTGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV++ + + A+ A+S GK GR + V
Sbjct: 235 FVNYGNHEEAQKAVSEMNGKEVNGRMIYVG 264
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 19/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T E ++ +FE++GT+ + M +N++RG FV
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGDELTDESLKEMFEKYGTITSHRV-MIKENKSRGFGFV 227
Query: 147 TMGSPDEATAALNNLESYE-------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF---N 196
+P+ A A+ L E + GR K N +++ K F ++ + + N
Sbjct: 228 AFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN 287
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 288 LYVKNLDDSIDDERLRKEFSPFG-TITSAKVMLEEG--RSKGFGFVCFSAAEEATKAVTE 344
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 345 MNGRIVGSKPLYVA 358
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 21/164 (12%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTMNFDLIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
D S GYGFV F++++ A T+I G K+F+GR
Sbjct: 122 A-QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGR 164
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+L++ +L + L E F S G V+S V RRS GY +V+F+ AE A+
Sbjct: 3 SLYVGDLHADITEAMLFEKFSSAG-PVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 256 AFQGKLFMGRPLRVAPSRQ 274
L GRP+R+ S++
Sbjct: 62 TMNFDLIKGRPIRIMWSQR 80
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R+ + K R + +N+ ++T ED+ +F ++G + + + + ++R F+
Sbjct: 204 QERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINF 263
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPVQPKPFATF---NLFI 199
SPD+A A+ L + GR K + ++ K F + NL++
Sbjct: 264 ESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYL 323
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL LRE F + G + S +V+ D S G GFV+F +++ A AI+ G
Sbjct: 324 KNLDDGISDDQLRELFSTFG-KITSCKVM-RDQNGVSKGSGFVAFSTREEASQAITEMNG 381
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 382 KMLSGKPLYVA 392
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 23/190 (12%)
Query: 104 VAQNVPWTS----------THEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPD 152
VAQ +P TS T + LF Q G V+ + + + R+ G A+V +P
Sbjct: 30 VAQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPM 89
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+A AL L + ++V Y+ ++P + + N+FI NL K L
Sbjct: 90 DAARALEMLNFVPLNNKPIRVMYSN---RDP----SSRRSGSANIFIKNLDKTIDNKTLH 142
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
+ F + G ++S +V D+ +S G+GFV ++ ++ A++A+ + G L +P+ V P
Sbjct: 143 DTFSAFGA-ILSCKVA-TDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGP- 199
Query: 273 RQFARLQTKE 282
F R Q ++
Sbjct: 200 --FLRKQERD 207
>gi|348519072|ref|XP_003447055.1| PREDICTED: hypothetical protein LOC100709068 [Oreochromis
niloticus]
Length = 603
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+P +THE++ LF +G + L R AFVT+ A A+ +L
Sbjct: 65 KLFVGNLPIDATHEELNKLFAPYGEINTCSLL-------RQYAFVTLKGEGAADRAIRHL 117
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG-- 219
+ E+ GR L V ++ + N + +F+ NLS A DL F + G
Sbjct: 118 DGKEYRGRPLVVEESRARPPN-----------STKVFVGNLSATCSADDLHGLFSAFGRV 166
Query: 220 --WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
D V A + + GY FV + K+ A AI A G +F GR L V
Sbjct: 167 LDCDKVKARLC------SNVGYAFVHMERKEEALAAIEALNGTMFKGRQLAV 212
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E R + T++ N+ T + +D+ LF G VLD + N G AFV M
Sbjct: 128 VVEESRARPPNSTKVFVGNLSATCSADDLHGLFSAFGRVLDCDKVKARLCSNVGYAFVHM 187
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+EA AA+ L F+GR L V +K +
Sbjct: 188 ERKEEALAAIEALNGTMFKGRQLAVELSKAQ 218
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ NL +A ++L + F G ++ + ++ Y FV+ K + A+ AI
Sbjct: 66 LFVGNLPIDATHEELNKLFAPYG-EINTCSLLRQ--------YAFVTLKGEGAADRAIRH 116
Query: 257 FQGKLFMGRPLRVAPSRQFARLQTK---EGLHSDETSDDLN 294
GK + GRPL V SR TK L + ++DDL+
Sbjct: 117 LDGKEYRGRPLVVEESRARPPNSTKVFVGNLSATCSADDLH 157
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ + + G ++ +++ + +++G FV+ +P+EA A+N L E GR L
Sbjct: 208 EQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAG 267
Query: 175 YAK------------IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
AK I+KK + F NL+I NL + LRE F G
Sbjct: 268 RAKKRAERAAEVKAEIEKKRQ---ERINRFQGVNLYIKNLDDPIDDERLREEFSPYG--T 322
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S+ + D+ S G+GFV F S + A A++ G++ + +PL VA
Sbjct: 323 ISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVA 370
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G+VL I + R+ G A+V P A AL+ + +GR ++ + +
Sbjct: 33 FSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTMNFDPIKGRPCRIMW---Q 89
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+++P + N+FI NL K L + F + G +++S + I D GY
Sbjct: 90 QRDP----SLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFG-NILSCK-IAQDELGNPKGY 143
Query: 240 GFVSFKSKKVAETAISAFQG------KLFMGR 265
GFV F+++ A AI+ G K+F+GR
Sbjct: 144 GFVHFETEDAALEAIARVDGMLLNDKKVFVGR 175
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207
M ++ A + NL EF GRTL+VN++ K P P+ P+ LF+ NLS+
Sbjct: 1 MSCIEDCNAVIENLNGKEFLGRTLRVNFSS--KPKPKEPLYPE--TEHKLFVGNLSWSVT 56
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
+ L + F G VV A V++ RS GYGFV + ++ E A++A GR +
Sbjct: 57 NEILTQAFQEYG-TVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRAM 115
Query: 268 RVA 270
RV+
Sbjct: 116 RVS 118
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+ W+ T+E + F+++GTV+ + + R+RG FV + E AA+
Sbjct: 45 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAA 104
Query: 161 LESYEFEGRTLKVNYAKIKK 180
L E EGR ++V+ A+ K+
Sbjct: 105 LNDVELEGRAMRVSLAQGKR 124
>gi|332029758|gb|EGI69627.1| ELAV-like protein 2 [Acromyrmex echinatior]
Length = 359
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 13/192 (6%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + +EE SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLGQTSQEE--SKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
A NL+++ L +DL F G ++++ ++ + S G GF+ F + AE
Sbjct: 114 A--NLYVSGLPKNMAQQDLENLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRVEAER 170
Query: 253 AISAFQGKLFMG 264
AI G + G
Sbjct: 171 AIQELNGTIPKG 182
>gi|326472099|gb|EGD96108.1| RNA binding domain-containing protein [Trichophyton tonsurans CBS
112818]
Length = 293
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E K + N+ + T D++ ++G VL + S+ +RG +V S +E
Sbjct: 75 RPEPQPKATVYVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVRFESVEE 134
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A++ + E+EGR L VN+A++ ++ P + +P T +F+ N++ + +DL
Sbjct: 135 AKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKMEP--TRTIFVGNIAHQVTDRDLHA 192
Query: 214 FF--ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F I +DV A PR G+ F + A +G+ GRPLR+
Sbjct: 193 LFDDIPNVFDVRVAVDRRTGMPR---GFAHAEFTDVESAIAGFEMLKGQAPYGRPLRL 247
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P+P +++ N+ F+ A DL+E+ + + V I +D+ S G+G+V
Sbjct: 71 LPPSRPEPQPKATVYVGNILFDITAADLKEY--ASKYGKVLGTRIIYDSRGLSRGFGYVR 128
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRV 269
F+S + A+ AI + GR L V
Sbjct: 129 FESVEEAKKAIDEMHLSEYEGRKLSV 154
>gi|302506947|ref|XP_003015430.1| nucleic acid-binding protein [Arthroderma benhamiae CBS 112371]
gi|291179002|gb|EFE34790.1| nucleic acid-binding protein [Arthroderma benhamiae CBS 112371]
Length = 293
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E K + N+ + T D++ ++G VL + S+ +RG +V S +E
Sbjct: 75 RPEPQPKATVYVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVRFESVEE 134
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A++ + E+EGR L VN+A++ ++ P + +P T +F+ N++ + +DL
Sbjct: 135 AKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKMEP--TRTIFVGNIAHQVTDRDLHA 192
Query: 214 FF--ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F I +DV A PR G+ F + A +G+ GRPLR+
Sbjct: 193 LFDDIPNVFDVRVAVDRRTGMPR---GFAHAEFTDVESAIAGFEMLKGQAPYGRPLRL 247
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P+P +++ N+ F+ A DL+E+ + + V I +D+ S G+G+V
Sbjct: 71 LPPSRPEPQPKATVYVGNILFDITAADLKEY--ASKYGKVLGTRIIYDSRGLSRGFGYVR 128
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRV 269
F+S + A+ AI + GR L V
Sbjct: 129 FESVEEAKKAIDEMHLSEYEGRKLSV 154
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ N+P+ E++ +LF Q GTV E+ + + +R+RG FVTM + +E A+
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 161 LESYEFEGRTLKVNYAKIKK-KNPFPPVQPKPFAT-FNLFIANLSFEARAKDLREFFISE 218
YE GR L VN A K + PP P+ F++ +++ NL +E L + F SE
Sbjct: 178 FSGYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIF-SE 236
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
V A V++ RS G+GFV+ S+ AI+A ++
Sbjct: 237 HGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDVRV 279
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+F+ NL F+ +++L F G V AEVI++ RS G+GFV+ + + + A+
Sbjct: 119 IFVGNLPFDIDSENLASLFGQAG-TVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 257 FQGKLFMGRPLRV 269
F G GR L V
Sbjct: 178 FSGYELNGRVLTV 190
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++LRE F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLRELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S G+GFVS++ + A A+ GK G+ + V
Sbjct: 226 CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 15/195 (7%)
Query: 89 VNTEQREEEYSKT--RLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
++ ++RE++ +T + +N+P + +T++D++ LFE+ GT+ L+ +++RG F
Sbjct: 172 LSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGF 231
Query: 146 VTMGSPDEATAALNNLESYEFE-------GRTLKVNYAKIKKKNPFPPV---QPKPFATF 195
V + + A AA+ + E E GR +K + + + K + + +
Sbjct: 232 VNFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNS 291
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL+I +L + LR+ F G +++ I DN S G+GFV+F S A AI
Sbjct: 292 NLYIKHLPEDVTEDALRDKFSKFG--TITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQ 349
Query: 256 AFQGKLFMGRPLRVA 270
G + G+PL VA
Sbjct: 350 EMHGSMIDGKPLYVA 364
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 121 FEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F Q G+V+ I + + +R G A+V +A AL L + + ++ +A+
Sbjct: 28 FSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEELNFEKIHDKPCRIMWAQ-- 85
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+NP + N+FI NL+ E K L + F + G ++S +V D S GY
Sbjct: 86 -RNP----AARRSGAGNIFIKNLNKEIDNKALYDTFSAFGT-ILSCKVAA-DEKGESRGY 138
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
GFV F+ ++ A+ AI GK+ + + + V
Sbjct: 139 GFVHFEKEEDAQKAIDTVNGKMLLKQVVTV 168
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R+E+ + L +++P T + +R F + GT+ +++ + +RG FV S
Sbjct: 282 QERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSA 341
Query: 152 DEATAALNNLESYEFEGRTLKVNYA 176
DEA AA+ + +G+ L V A
Sbjct: 342 DEAAAAIQEMHGSMIDGKPLYVALA 366
>gi|358054464|dbj|GAA99390.1| hypothetical protein E5Q_06087 [Mixia osmundae IAM 14324]
Length = 392
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 30/186 (16%)
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
V W +D++ LF + G V+ ++ + R RG V S +A AA+ + E
Sbjct: 199 VGW----QDLKDLFRECGDVIRADVHLDEDGRPRGSGMVLFSSAGDARAAIEQFDGMEIN 254
Query: 168 GRTLKVNYAKIKKKNP-----FP------------PVQPKP--FATFN----LFIANLSF 204
G L V +++ P +P +P+P FA + +F+ NL +
Sbjct: 255 GMKLTVKEDRVRGSGPPTRGAYPVRGGRGGGGSFGSGEPRPDRFANIDPSPQIFVKNLPW 314
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+DL E F + G V+ AE + R+ G G V F + A+TAI+ FQG + G
Sbjct: 315 STANEDLVELFQTVGT-VLHAEATQENG--RAKGTGVVEFATADDAQTAITKFQGYSYGG 371
Query: 265 RPLRVA 270
RPL +A
Sbjct: 372 RPLVLA 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ +N+PW++ +ED+ LF+ GTVL E + R +G V + D+A A+
Sbjct: 306 QIFVKNLPWSTANEDLVELFQTVGTVLHAE-ATQENGRAKGTGVVEFATADDAQTAITKF 364
Query: 162 ESYEFEGRTL 171
+ Y + GR L
Sbjct: 365 QGYSYGGRPL 374
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NLS++ R DL++F G VV+AEV+ N S G G + F+++ A AI
Sbjct: 80 VYVGNLSYQVRHADLKDFARDVG-KVVNAEVLMTPNG-MSKGCGLIEFETEGDARRAIKE 137
Query: 257 FQGKLFMGRPLRVAPSR 273
+GRP+ V R
Sbjct: 138 LNESSLLGRPVFVREDR 154
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFG-TITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ + +PL VA
Sbjct: 355 MNGRIIVTKPLYVA 368
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 105 AQNVPWTST-----HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDE 153
A N P S H DI LFE+ G VL I + R+ G A+V P +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A AL+ + +GR +++ +++ ++P + N+FI NL K + +
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F + G +++S +V D S GYGFV F++++ A +I G L G+ + V
Sbjct: 118 TFSAFG-NILSCKVA-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|302659529|ref|XP_003021453.1| nucleic acid-binding protein [Trichophyton verrucosum HKI 0517]
gi|291185354|gb|EFE40835.1| nucleic acid-binding protein [Trichophyton verrucosum HKI 0517]
Length = 293
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E K + N+ + T D++ ++G VL + S+ +RG +V S +E
Sbjct: 75 RPEPQPKATVYVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVRFESVEE 134
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A++ + E+EGR L VN+A++ ++ P + +P T +F+ N++ + +DL
Sbjct: 135 AKKAIDEMHLSEYEGRKLSVNFAQVDLRDEQPQRKMEP--TRTIFVGNIAHQVTDRDLHA 192
Query: 214 FF--ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F I +DV A PR G+ F + A +G+ GRPLR+
Sbjct: 193 LFDDIPNVFDVRVAVDRRTGMPR---GFAHAEFTDVESAIAGFEMLKGQAPYGRPLRL 247
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +P+P +++ N+ F+ A DL+E+ + + V I +D+ S G+G+V
Sbjct: 71 LPPSRPEPQPKATVYVGNILFDITAADLKEY--ASKYGKVLGTRIIYDSRGLSRGFGYVR 128
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRV 269
F+S + A+ AI + GR L V
Sbjct: 129 FESVEEAKKAIDEMHLSEYEGRKLSV 154
>gi|322695427|gb|EFY87235.1| RNA recognition motif containing protein [Metarhizium acridum CQMa
102]
Length = 725
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L +++P T+E + F QH V + + K + +RG FVT+ D+A AA N L
Sbjct: 44 LFVRSLPANVTNEALADFFSQHFPVKHAVVVVDQKTKESRGYGFVTLADSDDALAAKNTL 103
Query: 162 ESYEFEGRTLKVNYAKIKKKNPF---PPVQPKPFATFN-----LFIANLSFEAR-AKDLR 212
+ E+EG+ ++++ A+ +K+N V KP + L + NL + + ++ L
Sbjct: 104 DKAEWEGKRIRIDIAEPRKRNAANSEKTVHKKPGREESQKPPKLIVRNLPWSIKTSEQLS 163
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSA---GYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F S G +V F D P+ G+GFV+ + KK AE A+ GK GR L V
Sbjct: 164 HLFKSYG------KVKFADLPQSKGKLRGFGFVTIRGKKNAEKALEGVNGKEIDGRTLAV 217
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 94 REEEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
REE +L+ +N+PW+ T E + LF+ +G V +L SK + RG FVT+
Sbjct: 138 REESQKPPKLIVRNLPWSIKTSEQLSHLFKSYGKVKFADLP-QSKGKLRGFGFVTIRGKK 196
Query: 153 EATAALNNLESYEFEGRTLKVNYA 176
A AL + E +GRTL V++A
Sbjct: 197 NAEKALEGVNGKEIDGRTLAVDWA 220
>gi|47086421|ref|NP_997973.1| RNA binding motif protein 14 [Danio rerio]
gi|46249892|gb|AAH68361.1| Zgc:85696 [Danio rerio]
gi|68085002|gb|AAH56604.2| Zgc:85696 [Danio rerio]
Length = 556
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+ +T E++ A+FE +G V+ + R AFV + A A+
Sbjct: 7 VKLFVGNLALDTTQEELSAIFESYGQVVSCSVL-------RQFAFVHLQGEGAAERAIRE 59
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L EF+GR L V ++ + P + +F+ NLS +DL+E F + G
Sbjct: 60 LNGREFKGRNLVVEESRGR-----------PLHSTKVFVGNLSSMCTTEDLQELFQTFG- 107
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL-----RVAPSRQ 274
+V+ D + GY FV ++K+ A AI A G F GRPL +V PS+Q
Sbjct: 108 -----KVLECD---KVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQ 158
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E R T++ N+ T ED++ LF+ G VL+ ++ +G AFV M
Sbjct: 71 VVEESRGRPLHSTKVFVGNLSSMCTTEDLQELFQTFGKVLEC-------DKVKGYAFVHM 123
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP 185
+ ++A A+ L F+GR L V +K++ P
Sbjct: 124 ENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTP 160
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
T LF+ NL+ + ++L F S G VVS V+ + FV + + AE A
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYG-QVVSCSVLRQ--------FAFVHLQGEGAAERA 56
Query: 254 ISAFQGKLFMGRPLRVAPSRQFARLQTK---EGLHSDETSDDLN 294
I G+ F GR L V SR TK L S T++DL
Sbjct: 57 IRELNGREFKGRNLVVEESRGRPLHSTKVFVGNLSSMCTTEDLQ 100
>gi|170046272|ref|XP_001850696.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
gi|167869088|gb|EDS32471.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
Length = 332
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L NV + D+R LFE++GTV++ ++ + FV M + D A+ NL
Sbjct: 8 KLFIGNVDEKTQPSDLRPLFEKYGTVVECDVV-------KNYGFVHMETEDMGRDAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
+ Y G+ +KV A+ ++ P T +F+ NL+ RA +RE F G
Sbjct: 61 DGYVVNGKAIKVEAARNRR-------APNSNTT-KIFVGNLTDVTRAPQVRELFQKYGT- 111
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ + YGFV + AI G + G+P++V S +R++ K
Sbjct: 112 VVECDIVRN--------YGFVHLDPQGDVNEAIRELNGMMVDGQPMKVQVS--TSRVRPK 161
Query: 282 EGLHSDE 288
G+ E
Sbjct: 162 PGMGDPE 168
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
ATF LFI N+ + + DLR F G VV +V+ YGFV +++ +
Sbjct: 5 ATFKLFIGNVDEKTQPSDLRPLFEKYGT-VVECDVV--------KNYGFVHMETEDMGRD 55
Query: 253 AISAFQGKLFMGRPLRVAPSR 273
AI G + G+ ++V +R
Sbjct: 56 AIQNLDGYVVNGKAIKVEAAR 76
>gi|298707925|emb|CBJ30311.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 351
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 26/216 (12%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESY 164
+ +PWT D+R F+ G + D+ + R RG A V A AA Y
Sbjct: 134 EGIPWTCDESDVREFFKGCGKITDVRMPRWQDSGRPRGYAHVAFAGSSGARAAFGRDGQY 193
Query: 165 EFEGRTLKVNYAKIKKKN-----PFPPVQPK----------PFATFNLFIANLSFEARAK 209
GR L V ++ N P P K P +F+ NL ++
Sbjct: 194 -LNGRYLTVQQITVESNNHALQAPQEPATEKARRANRKAEQPTGCRTVFVKNLPYDVDED 252
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ E G + S + ++ R+ G+G+V F +++ AET + Q GRPL V
Sbjct: 253 AVSEALAGCG-RIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQNLSIGGRPLVV 311
Query: 270 -----APSRQFARLQTKEGLHSDETSDDLNINAEEA 300
AP F R ++G +TS D + +A
Sbjct: 312 DFETGAPKGSFRR---QDGAQIKKTSADAGVGKGKA 344
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFG-TITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ + +PL VA
Sbjct: 355 MNGRIIVTKPLYVA 368
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++LRE F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLRELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S G+GFVS++ + A A+ GK G+ + V
Sbjct: 226 CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|158254301|gb|AAI54223.1| Zgc:85696 [Danio rerio]
Length = 556
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+L N+ +T E++ A+FE +G V+ + R AFV + A A+
Sbjct: 7 VKLFVGNLALDTTQEELSAIFESYGQVVSCSVL-------RQFAFVHLQGEGAAERAIRE 59
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L EF+GR L V ++ + P + +F+ NLS +DL+E F + G
Sbjct: 60 LNGREFKGRNLVVEESRGR-----------PLHSTKVFVGNLSSMCTTEDLQELFQTFG- 107
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL-----RVAPSRQ 274
+V+ D + GY FV ++K+ A AI A G F GRPL +V PS+Q
Sbjct: 108 -----KVLECD---KVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQ 158
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E R T++ N+ T ED++ LF+ G VL+ ++ +G AFV M
Sbjct: 71 VVEESRGRPLHSTKVFVGNLSSMCTTEDLQELFQTFGKVLEC-------DKVKGYAFVHM 123
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP 185
+ ++A A+ L F+GR L V +K++ P
Sbjct: 124 ENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTP 160
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
T LF+ NL+ + ++L F S G VVS V+ + FV + + AE A
Sbjct: 6 TVKLFVGNLALDTTQEELSAIFESYG-QVVSCSVLRQ--------FAFVHLQGEGAAERA 56
Query: 254 ISAFQGKLFMGRPLRVAPSRQFARLQTK---EGLHSDETSDDLN 294
I G+ F GR L V SR TK L S T++DL
Sbjct: 57 IRELNGREFKGRNLVVEESRGRPLHSTKVFVGNLSSMCTTEDLQ 100
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 18/206 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
+ RE SKT+ + +N+ ++T E++ F ++GT+ + + ++R FV
Sbjct: 202 QDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNF 261
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPV---QPKPFATFNLFI 199
+PD+A A+ L +F+ + V A+ K K F + NL++
Sbjct: 262 ENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYL 321
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + L+E F G +++ + D S G GFV+F + + A A+ G
Sbjct: 322 KNLDDTISDEKLKEMFADYG--TITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNG 379
Query: 260 KLFMGRPLRVAPSR----QFARLQTK 281
K+F G+PL VA ++ + ARLQ +
Sbjct: 380 KMFAGKPLYVALAQRKEERRARLQAQ 405
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 13/199 (6%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGL 143
+ N ++ T L ++ + LF Q G V+ + + + R+ G
Sbjct: 19 NGGVANAPNNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGY 78
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
+V +P +A AL+ L R++++ Y+ ++P + T N+FI NL
Sbjct: 79 GYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSH---RDP----SLRKSGTANIFIKNLD 131
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
K L + F S G ++S + I D S GYGFV F +++ A+ AI G L
Sbjct: 132 KAIDHKALHDTFSSFGL-ILSCK-IATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLIN 189
Query: 264 GRPLRVAPSRQFARLQTKE 282
+ + V F R Q +E
Sbjct: 190 DKQVYVG---HFLRKQDRE 205
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++LRE F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLRELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S G+GFVS++ + A A+ GK G+ + V
Sbjct: 226 CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 13/190 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E+ LF ++G+V + + + R++G FV S +EA AA++N
Sbjct: 226 TNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDN 285
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L + +G+ L V A+ K + + + + + + NL++ NL + L
Sbjct: 286 LHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKL 345
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV-- 269
R F E + +++ + D S G+GFV F S A AI+ K+ +PL V
Sbjct: 346 RAEF--EPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSL 403
Query: 270 APSRQFARLQ 279
A R+ R Q
Sbjct: 404 AQRREVRRQQ 413
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 10/162 (6%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169
T T I +F G V I + + R+ G A+V + + AL L +GR
Sbjct: 55 TVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQLNYSLIKGR 114
Query: 170 TLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
++ +++ ++P + N+FI NL + K L + F++ G +V+S +V
Sbjct: 115 PCRIMWSQ---RDP----ALRKTGQGNIFIKNLDEQIDNKALHDTFVAFG-NVLSCKVA- 165
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
D RS GYGFV +++ + AETAI A G L + + V P
Sbjct: 166 TDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGP 207
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + +RA FE GT+ ++ K ++G FV SPDEAT
Sbjct: 325 KYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATK 384
Query: 157 ALNNLESYEFEGRTLKVNYAK 177
A+ + + + L V+ A+
Sbjct: 385 AIAEMNNKMIGSKPLYVSLAQ 405
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E++R LF Q G L +++ +++G FV+ ++A A+ + E G+++ V
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E ++LRE F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDENLRELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S G+GFVS++ + A A+ GK G+ + V
Sbjct: 226 CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFG-TITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ + +PL VA
Sbjct: 355 MNGRIIVTKPLYVA 368
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|18150431|gb|AAL61622.1|AF414188_1 FCA gamma [Brassica napus]
Length = 715
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEA 154
S +L +VP T+T E++R FEQHG VL++ + + +G FV T D A
Sbjct: 100 SMVKLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRTGQQQGCCFVKYATSEDADRA 159
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
AL+N + ++V YA +++ F LF+ +L+ +A ++ E
Sbjct: 160 IRALHNQITLPGGTGLVQVRYADGERER-------IGAVEFKLFVGSLNKQATENEVEEL 212
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
F+ G V + D R+S G GFV + SK+ A AI G M
Sbjct: 213 FLQFGR--VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTM 259
>gi|325183203|emb|CCA17661.1| nucleolin putative [Albugo laibachii Nc14]
Length = 701
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
+PW +T +R FE GTV I++ R G A + EA AAL L+ +F
Sbjct: 442 GLPWEATEAQVRERFESCGTVEHIDMQTQGDGRPSGKARIRFSCASEAEAAL-ELDGSDF 500
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
GR LK+ A + KP F+ NL ++A + EFF S+ ++
Sbjct: 501 GGRWLKIQLAN--------EILEKPENCTTAFVGNLPWDADDNSVCEFF-SQCGEIGECR 551
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++ G G+V F S + A+ AI G F GR LR+
Sbjct: 552 LLSDRETGEFRGIGYVEFTSTEAADEAIK-LNGADFNGRSLRI 593
>gi|384499302|gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar RA 99-880]
Length = 292
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESYEFEG 168
+ +T E+IR F Q G V D+ L MH ++RG A + S + AA+ L+ EF G
Sbjct: 90 FDATAEEIRTHFGQCGPVSDVRLRMHPNGVKSRGFAHIDFTSAEGKQAAMA-LDGTEFMG 148
Query: 169 RTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
RT++V+ A+ + ++ PK T +F+ANLS++ L++ F G V +
Sbjct: 149 RTIRVDDAQPAQGRSTDTNYGPK---TDKVFVANLSYDTDEDSLKQAFEKFGTIVGEIGL 205
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ R G ++ F+++ AE A+ G GRP+R
Sbjct: 206 PISRDTGRIRGIAYIQFETEDEAEAAVKGMNGVYLDGRPIRT 247
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVL-DIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESY 164
N+ + + + ++ FE+ GT++ +I L + R RG+A++ + DEA AA+ +
Sbjct: 179 NLSYDTDEDSLKQAFEKFGTIVGEIGLPISRDTGRIRGIAYIQFETEDEAEAAVKGMNGV 238
Query: 165 EFEGRTLKVNYAKIKKKN 182
+GR ++ +++ +N
Sbjct: 239 YLDGRPIRTDFSGDNDRN 256
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFG-TITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ + +PL VA
Sbjct: 355 MNGRIIVTKPLYVA 368
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFG-TITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ + +PL VA
Sbjct: 355 MNGRIIVTKPLYVA 368
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ + ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFG-TITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ + +PL VA
Sbjct: 355 MNGRIIVTKPLYVA 368
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ N+ W +T + +R F + G +LD I + R+RG FVT G+P+EA AA+NN
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAINN 63
Query: 161 LESYEFEGRTLKVNYAKIK 179
L E +GR ++VN A K
Sbjct: 64 LNEQELDGRRIRVNLANAK 82
>gi|32482072|gb|AAP84392.1| FCA protein [Triticum aestivum]
Length = 736
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L +VP T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 119 VKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 178
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V Y +K+ LF+A+L+ +A AK++ E F
Sbjct: 179 ALHNQCTIPGAMGPVQVRYVDGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 231
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G G V F SK+ A A+++ G M
Sbjct: 232 PFGH--VEDVYIMRDGMRQSRGCGLVKFSSKEPALAAMNSLSGTYIM 276
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V+ Q +E T + +N+ T+T +D++ +FE+ G + + + ++R FV
Sbjct: 107 VSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNF 166
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP-----------KPFATFNL 197
+ A A++ + + + L V A+ +KKN ++ K NL
Sbjct: 167 EKAEAAVTAIDKMNGTIVDEKELHVGRAQ-RKKNRIQDLKVIFKLEKIKRDMKTRKGTNL 225
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + L+E F SE ++S +V+ H N R S G GFV F + + A A+
Sbjct: 226 YVKNLDYSVDNTKLQELF-SEFGTIISCKVMVHPN-RISKGVGFVEFSTSEEASKAMLKM 283
Query: 258 QGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDDLNINAEEADTA 303
GK+ +P+ V+ A+ + + LH ++L N + A
Sbjct: 284 NGKVVGNKPIYVS----LAQCKEEHKLHLHTQFNNLPWNVVSSTIA 325
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L Y+ +G+ +++ +++ ++P + + N+F+ NL K L + F + G
Sbjct: 4 LNFYKLKGKPMRIMFSE---RDPSKRLSGRG----NVFVKNLDESIDNKQLSDMFSAFG- 55
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP--------- 271
V+S +V+ D S GYGFV F S+ A + G L + + V+P
Sbjct: 56 KVLSCKVV-RDASGVSKGYGFVQFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRRQWDE 114
Query: 272 SRQFARLQTKEGLHSDETSDDLNINAEE 299
SR F + K L T DDL + EE
Sbjct: 115 SRVFTNVYVKN-LAETTTDDDLKMIFEE 141
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 86 AAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLA 144
A+AVN + E S L N+ +++ E I +F + ++ KN+ A
Sbjct: 88 ASAVNGGR---EISNKILYVGNLAKSASEEQINEIFSSVSNPIKSIKLLNDKNKLGFNYA 144
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATFNLFIANL 202
F+ ++A ALN+L + G +KVN+A P +P ++N+F+ +L
Sbjct: 145 FIEFNESEDAEKALNSLNGKDVNGSDIKVNWAYQSAAIAGGSTPEEP----SYNIFVGDL 200
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
S E + L++ F G + A V++ RS GYGFV+F ++ AE A+ + G+
Sbjct: 201 SSEVNDEALKKAFTKFG-SLKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQSMNGEWL 259
Query: 263 MGRPLRV 269
GR +R
Sbjct: 260 GGRAIRC 266
>gi|302817851|ref|XP_002990600.1| hypothetical protein SELMODRAFT_27868 [Selaginella moellendorffii]
gi|300141522|gb|EFJ08232.1| hypothetical protein SELMODRAFT_27868 [Selaginella moellendorffii]
Length = 157
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNN 160
++ A +P+T++ ++I + F + G + +I+ + R RGLAF+T D +
Sbjct: 1 KIYAGGMPYTTSEDEIHSYFSECGAIEEIDYTTFPDTGRFRGLAFITF-KVDSLFLFRSK 59
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
L S E +T PP PK ++++ NLS++A KDLR+FF +
Sbjct: 60 LSSMECLSQT-----------QAAPP--PKTEGCTSVYVGNLSWDATEKDLRQFF--KRC 104
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ S + R G+G V F+ + E AI Q KLF+ RP+++A
Sbjct: 105 KITSVRLALDKETREFKGFGHVDFEDDESVERAIKLDQ-KLFLNRPIKIA 153
>gi|170060137|ref|XP_001865670.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
gi|167878677|gb|EDS42060.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
Length = 402
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
+++ K +L + W +T E+++ F ++G V+D + + + R+RG FVT P+
Sbjct: 14 DDHEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPENV 73
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLRE 213
AL N + +GRT+ K NP +PK + +F+ L DLR
Sbjct: 74 ERALEN-GPHTLDGRTIDP-----KPCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRS 127
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
FF G +V+ +++ ++S G+GF+SF+++ E A +
Sbjct: 128 FFSRYG-NVMEVVIMYDQEKKKSRGFGFLSFENEAAVERATA 168
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
+ + +FE++G + ++ +NRG FV+ PD A A+ L + GR L V
Sbjct: 206 DKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVG 265
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + NL++ NL + LR+ F G ++ SA
Sbjct: 266 RAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLRKEFGPFG-NITSA 324
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ N R S G+GFV F S + A A++ G++ + +PL VA
Sbjct: 325 KVMTDANGR-SKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVA 368
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T ++ + F G +L ++ + ++G FV + + A A++ +
Sbjct: 104 KNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGML 163
Query: 166 FEGRTLKVNYAK-IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
+ KV K I +K + K N++I N E D + I E + ++
Sbjct: 164 LNNK--KVYVGKFIPRKEREKMLGDKARCFTNVYIKNFGDEL--DDDKLLVIFEKYGKIT 219
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGL 284
+ + D+ ++ G+GFVSF+ AE A+ GK GRPL V +++ A Q++
Sbjct: 220 SAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKR 279
Query: 285 H 285
H
Sbjct: 280 H 280
>gi|11045077|emb|CAB41488.2| putative FCA orthologue [Brassica napus]
Length = 384
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P ++ SS + R S +L +VP T+T E++R FEQHG VL++ +
Sbjct: 86 PLLEQSSFTGTDFTDRS---SMVKLFVGSVPRTATEEEVRPFFEQHGNVLEVAFIKDKRT 142
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++
Sbjct: 143 GQQQGCCFVKYATSEDADRAIRALHNQITLPGGTGLVQVRYADGERER-------IGAVE 195
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
F LF+ +L+ +A ++ E F+ G V + D R+S G GFV + SK+ A AI
Sbjct: 196 FKLFVGSLNKQATENEVEELFLQFGR--VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAI 253
Query: 255 SAFQGKLFM 263
G M
Sbjct: 254 DGLNGTYTM 262
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R+ + KT+ + +N+ ++T ED+ +F ++G + + + ++R F+
Sbjct: 207 QERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINF 266
Query: 149 GSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPPV---QPKPFATFNLFI 199
+PD A+ A+ L + + GR K + +++ K F + + NL++
Sbjct: 267 ENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLNLYL 326
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL LRE F + G + S +V+ D S G GFV+F +++ A A++ G
Sbjct: 327 KNLDDSIGDDQLRELFSNFG-KITSCKVM-RDQNGLSKGSGFVAFSTREEASQALTEMNG 384
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 385 KMISGKPLYVA 395
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 23/190 (12%)
Query: 104 VAQNVPWTSTH----------EDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPD 152
VAQ +P TS + + LF Q G V+ + + + R+ G A+V +P
Sbjct: 33 VAQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPL 92
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+A AL L + ++V Y+ ++P + + N+FI NL K L
Sbjct: 93 DAARALEVLNFAPLNNKPIRVMYSN---RDP----SSRRSGSANIFIKNLDKMIDNKSLH 145
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
E F S G ++S +V D +S G+GFV ++ ++ A+ AI + G L +P+ V P
Sbjct: 146 ETFSSFGT-ILSCKVAM-DEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGP- 202
Query: 273 RQFARLQTKE 282
F R Q ++
Sbjct: 203 --FLRKQERD 210
>gi|406606542|emb|CCH42041.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
[Wickerhamomyces ciferrii]
Length = 482
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
Q E S L + T + + +R +F QHG + ++++ +N AF+ +
Sbjct: 94 QGGREVSNKILYVGGLDKTISEDQLREIFSQHGEIDNVKILFDKNKQNFNYAFIEFQNEL 153
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-FNLFIANLSFEARAKDL 211
A+ A L + + + +N+A + Q K + FN+F+ +LS E + L
Sbjct: 154 NASNAFQELNNKTLQNSVISINWA-------YQSQQAKNSSEHFNIFVGDLSTEIDDEQL 206
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ F +E +V A V++ RS GYGFVSF +++ AE A++ QG R +R+
Sbjct: 207 KAAF-NEYKSLVQAHVMWDMQSGRSRGYGFVSFTNQQDAELALTTKQGSQIGNRQVRL 263
>gi|59802584|gb|AAX07527.1| unknown [Prosthecobacter dejongeii]
Length = 111
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAAL 158
T++ N+P+T+ ++RALF +GTV D+ L M H+ R RG AFVTM S A+
Sbjct: 4 NTKMYVGNLPFTAMESELRALFNDYGTVTDMHLPMDHATGRPRGFAFVTMDSAMAMNEAI 63
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNP 183
L +F GR+L +N A+ K+ P
Sbjct: 64 TALNGKDFGGRSLTINEARPKEDRP 88
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NL F A +LR F G V + R G+ FV+ S AI+A
Sbjct: 7 MYVGNLPFTAMESELRALFNDYGT-VTDMHLPMDHATGRPRGFAFVTMDSAMAMNEAITA 65
Query: 257 FQGKLFMGRPLRVAPSR 273
GK F GR L + +R
Sbjct: 66 LNGKDFGGRSLTINEAR 82
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEA 206
M + +EA A+ Y+ GR L VN A + P + FA F ++ NL ++
Sbjct: 1 MSTVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERP--QRQFAPAFRAYVGNLPWQV 58
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266
L + F SE +VV A+V++ RS G+GFVS SK+ AISA G+ GRP
Sbjct: 59 DDSRLVQLF-SEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRP 117
Query: 267 LRV 269
LRV
Sbjct: 118 LRV 120
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 81 VDSSSAAAVNTEQREEEYSKT-RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-N 138
V+ +S+ E+ + +++ R N+PW + LF +HG V+D ++ +
Sbjct: 26 VNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETG 85
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF 184
R+RG FV+M S +E A++ L+ E +GR L+VN A + + F
Sbjct: 86 RSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAERPQRGF 131
>gi|115450405|ref|NP_001048803.1| Os03g0123200 [Oryza sativa Japonica Group]
gi|25446691|gb|AAN74838.1| Unknown protein [Oryza sativa Japonica Group]
gi|108705923|gb|ABF93718.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113547274|dbj|BAF10717.1| Os03g0123200 [Oryza sativa Japonica Group]
gi|125584746|gb|EAZ25410.1| hypothetical protein OsJ_09226 [Oryza sativa Japonica Group]
gi|215694916|dbj|BAG90107.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATA 156
Y ++VA +P+T+T +IR LFE+ G + ++LS + N RGLAFV+ S +
Sbjct: 70 YETGKVVASGLPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFESNEVVMK 129
Query: 157 ALNNLESYEFEGRTLKVNYAKI------KKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+L L+ ++ R ++V ++ K+ F K + ++ NL ++ D
Sbjct: 130 SL-ELDGFKIGNRFMRVERCRLAAGSKRKRTVEFQTDPKKADGCLSAYVGNLKWDVTETD 188
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGF--VSFKSKKVAETAISAFQGKLFMGRPLR 268
LR+FF S + + + F N R GF V F+ + E A+ Q +L GRP++
Sbjct: 189 LRDFFKS----LKISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMNQSEL-RGRPIK 243
Query: 269 VA 270
++
Sbjct: 244 IS 245
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 13/180 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N T + ++ +FE++GT+ ++ + ++RG FV PD A A+
Sbjct: 171 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLE 230
Query: 161 LESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKD 210
L E EG+ + V A+ K K F ++ + + NL++ NL +
Sbjct: 231 LNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 290
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
LR+ F G + SA+V+ + RS G+GFV F + + A A++ G++ + +PL VA
Sbjct: 291 LRKEFAPFG-TITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 347
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
D S GYGFV F++++ A +I G L G+ L
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKL 169
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|448111784|ref|XP_004201926.1| Piso0_001392 [Millerozyma farinosa CBS 7064]
gi|359464915|emb|CCE88620.1| Piso0_001392 [Millerozyma farinosa CBS 7064]
Length = 422
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 11/206 (5%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR- 139
++SS A+AV+ + E S T L + + + + +R LF G V I+ +++ KNR
Sbjct: 55 MESSPASAVDGGR---EISNTILYVGGLHKSVSEDVLRDLFSSCGGVKSIK-TLNDKNRP 110
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
AFV + D A AL L +K+N+A + Q +PF FN+F+
Sbjct: 111 GFSYAFVEFENTDSAELALRTLNGRMVNNSVIKINWA-YQSSAVSTASQQEPF--FNIFV 167
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+LS E + L + F S+ + A V++ RS GYGFVSF ++ AE A+ G
Sbjct: 168 GDLSPEVDDESLHKAF-SKFESLRQAHVMWDMQTSRSRGYGFVSFGNQVDAELALQTMNG 226
Query: 260 KLFMGRPLRV--APSRQFARLQTKEG 283
+ GR +R A +QF + + G
Sbjct: 227 EWIGGRAIRCNWASHKQFNNPKFRAG 252
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + +R F GT+ I LS ++RG FV ++A A+
Sbjct: 228 TNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEE 287
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPV---QPKPFATFNLFIANLSFEARAKDL 211
L + + +G+ L V A+ K K+ + Q + +NLF+ NL L
Sbjct: 288 LNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKL 347
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D+ +S G+GFV + S + A AI+ ++ G+PL VA
Sbjct: 348 EEEFKPYGT-ITSAKVML-DDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVA 404
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 9/153 (5%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN--YAKI 178
F G +L +++ ++G FV + A AA+ N+ + V AK
Sbjct: 155 FSAFGKILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKK 214
Query: 179 KKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA 237
+++ + A F N+++ N++ LRE F G +S+ + D +S
Sbjct: 215 DRQSKMREL----IANFTNVYVKNINLNWDEDKLRETFSPFG--TISSIFLSKDESGKSR 268
Query: 238 GYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G+GFV+F+ + A A+ K G+ L V
Sbjct: 269 GFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVG 301
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + + F+ +GT+ ++ + +++G FV SP+EAT
Sbjct: 327 KYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATK 386
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ + G+ L V A+ K+
Sbjct: 387 AITEMHQRMVAGKPLYVALAQRKE 410
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T E+ LF +G + I L +++G FV D A A+
Sbjct: 230 TNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEE 289
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + ++ + A + NLF+ NL ++ L
Sbjct: 290 LNDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKL 349
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D+ +S G+GFV F + + A AI+ ++ +PL VA
Sbjct: 350 EEEFKPFGT-ITSAKVMV-DDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVA 406
>gi|357155243|ref|XP_003577055.1| PREDICTED: flowering time control protein FCA-like [Brachypodium
distachyon]
Length = 749
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATAA 157
+L +VP T+ +D+R LF HG VL++ L K +G FV + +E A A
Sbjct: 128 KLFVGSVPRTANEDDVRPLFADHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 187
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + ++V YA +K+ LF+A+L+ +A AK++ E F
Sbjct: 188 LHNQCTIPGAMGPVQVRYADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFSP 240
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 241 FGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYVM 284
>gi|195328687|ref|XP_002031046.1| GM24242 [Drosophila sechellia]
gi|194119989|gb|EDW42032.1| GM24242 [Drosophila sechellia]
Length = 244
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL----AFVTMG 149
R E KT L+ +P T ++ LF ++G + ++ H R+ G+ FV
Sbjct: 34 RTEVRDKTNLILNYLPQDMTESELHRLFSKYGEIRKAKVIRH---RDTGISCCYGFVDFV 90
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
S +A AA+NNL YE G+ LKV +A+ P + NL++ANL K
Sbjct: 91 SERQAAAAVNNLNGYETRGKRLKVAFAR-----------PSEYENTNLYVANLPTYMDEK 139
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG--RPL 267
+RE F G +++ ++ H + G F+ F+ + AE A + G RPL
Sbjct: 140 KIRELFAPFG-NILDVTLLRHRFNNKFRGVAFLDFELVRDAEEAKYGMDRHMIKGAFRPL 198
Query: 268 RV 269
+V
Sbjct: 199 KV 200
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPD 152
R EY T L N+P + IR LF G +LD+ L H N+ RG+AF+
Sbjct: 118 RPSEYENTNLYVANLPTYMDEKKIRELFAPFGNILDVTLLRHRFNNKFRGVAFLDFELVR 177
Query: 153 EATAALNNLESYEFEG--RTLKVNYAKIKKKNP 183
+A A ++ + +G R LKV + + K P
Sbjct: 178 DAEEAKYGMDRHMIKGAFRPLKVKFVERAKSGP 210
>gi|452001822|gb|EMD94281.1| hypothetical protein COCHEDRAFT_1094167 [Cochliobolus
heterostrophus C5]
Length = 501
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ W + +R FE G ++ ++ R +G +V +A A ++
Sbjct: 250 LFVGNLSWNIDEDWLRREFESFGEIVGCRVITDRETGRAKGFGYVEFAKAADAAKAQKDM 309
Query: 162 ESYEFEGRTLKVNYAKIKKK-------NPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
YE +GR L V+++ ++K N F + P T LFI NLSF+ + ++E
Sbjct: 310 HEYELDGRPLNVDFSTPRQKPDANARANKFGDKRSAPSNT--LFIGNLSFDCTNETIQEV 367
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G +V + + G+G+V F S++ A A+ A QG+ GRPLRV
Sbjct: 368 FAEYG-NVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALEALQGQDVAGRPLRV 421
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ + T+E I+ +F ++G V + L + +G +V GS +EATAAL L
Sbjct: 350 LFIGNLSFDCTNETIQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALEAL 409
Query: 162 ESYEFEGRTLKVNYAKIKKKN 182
+ + GR L+V++A + N
Sbjct: 410 QGQDVAGRPLRVDFAAPRDDN 430
>gi|281212020|gb|EFA86181.1| hypothetical protein PPL_00743 [Polysphondylium pallidum PN500]
Length = 602
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALN 159
T L+ N+P + ED+R +F G ++ ++ N +N G FV +P+ ATAA+
Sbjct: 153 TNLIINNIPKHFSSEDLRDMFANFGEIVSYKVVTKRGNSKNMGYGFVKYATPEGATAAIE 212
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ + + + LKV+YA NL++ L + +DL E F S+
Sbjct: 213 QMNGHSIDLKFLKVSYATATSSQS---------THANLYVNRLEPQVTKEDLAEAF-SKF 262
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+VV +++ N S GFV F +++ A TA+SA G P + P
Sbjct: 263 GEVVETKILVDPNTGSSRCVGFVHFSARRNALTALSAMNGANI---PCQTGP 311
>gi|326477036|gb|EGE01046.1| RNA recognition motif-containing protein [Trichophyton equinum CBS
127.97]
Length = 300
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 7/172 (4%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K + N+ + T D++ ++G VL + S+ +RG +V S +EA A++
Sbjct: 88 KATVYVGNILFDITAADLKEYASKYGKVLGTRIIYDSRGLSRGFGYVRFESVEEAKKAID 147
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF--IS 217
+ E+EGR L VN+A++ ++ P + +P T +F+ N++ + +DL F I
Sbjct: 148 EMHLSEYEGRKLSVNFAQVDLRDEQPQRKMEP--TRTIFVGNIAHQVTDRDLHALFDDIP 205
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+DV A PR G+ F + A +G+ GRPLR+
Sbjct: 206 NVFDVRVAVDRRTGMPR---GFAHAEFTDVESAIAGFEMLKGQAPYGRPLRL 254
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 184 FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243
PP +PKP +++ N+ F+ A DL+E+ + + V I +D+ S G+G+V
Sbjct: 78 LPPSRPKPQPKATVYVGNILFDITAADLKEY--ASKYGKVLGTRIIYDSRGLSRGFGYVR 135
Query: 244 FKSKKVAETAISAFQGKLFMGRPLRV 269
F+S + A+ AI + GR L V
Sbjct: 136 FESVEEAKKAIDEMHLSEYEGRKLSV 161
>gi|70983602|ref|XP_747328.1| nucleic acid-binding protein [Aspergillus fumigatus Af293]
gi|66844954|gb|EAL85290.1| nucleic acid-binding protein [Aspergillus fumigatus Af293]
gi|159123666|gb|EDP48785.1| nucleic acid-binding protein [Aspergillus fumigatus A1163]
Length = 324
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 7/182 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T ED++ +Q G V ++L ++ +RG A+V S + A + + + F
Sbjct: 150 NLFYDVTAEDLKNHMQQFGVVERVDLITDNRGLSRGFAYVHFDSIEAAKSCVEAMHLQIF 209
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + YA P P A+ L++ NLSFE +DL E F +V+
Sbjct: 210 EGRRITAQYASSGGTRPLRP------ASRTLYLGNLSFEMTDRDLNELFRDIN-NVIDVR 262
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLHS 286
V + G+ F + A+ A GK GR +RV S R EG+
Sbjct: 263 VSVDRRTGQPRGFAHAEFLDVESAQKAFEILSGKAPYGRRIRVDYSSTNRRGDRIEGVPD 322
Query: 287 DE 288
+E
Sbjct: 323 EE 324
>gi|356503942|ref|XP_003520758.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 496
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 31/174 (17%)
Query: 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAA---LNNLES 163
VP T+T ++IR +FE+HGT+++I L H K R G FV + DEA A LNN +
Sbjct: 80 VPRTATEDEIRPVFEEHGTIVEIVLLKHKKTGTRQGSCFVKYATFDEADRAIKVLNNKYT 139
Query: 164 YEFEGRTLKVNYA--------------KIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ E + V +A ++KK+P V K +F+++++ EA K
Sbjct: 140 FAGESYPVVVKFADRELERLGVRGLCRNMEKKDPLEEVADK------VFVSSINKEATNK 193
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
D+ E F G E IF + + GY FV F ++++A AI M
Sbjct: 194 DIEEIFSPYG----HVEDIFF---KSTHGYAFVKFSNREMALAAIKGLNKTFTM 240
>gi|345489601|ref|XP_001600266.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Nasonia vitripennis]
Length = 376
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V E ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKNEMDDDE--KGKLFVGGLSWETTQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPSNVGLVLQN-GPHQLDGRTIDP-----KPCNPRTLQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + +
Sbjct: 115 TETDLRSFFQRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVG 162
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W E + FE++GTV++ + M + R++G +V SP+ A AA+ E +G
Sbjct: 215 WNVDDEWLGKEFEEYGTVVNARVIMDGQSGRSKGFGYVDFDSPEAAKAAVAVNGQKEIDG 274
Query: 169 RTLKVNYAK---IKKKNPFPPVQPKPFA------TFNLFIANLSFEARAKDLREFFISEG 219
R + ++ + + N F + F + +FI NLSF A D+R F S G
Sbjct: 275 RMVNLDISTPRPAQNNNGFAQQRASNFGDKQSPPSDTVFIGNLSFNATEDDVRNAFSSCG 334
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++ S + N R G+G+V+F S A+ + G GRP R+
Sbjct: 335 -EIQSVRLPTDMNSGRPKGFGYVTFDSIDAAKQCVE-MNGHFIAGRPCRL 382
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
T E + LF Q G V ++ N AF+ G ++A AL + R ++
Sbjct: 49 TDEFLATLFNQIGAVTKAKVCFDGMNDP--FAFIEFGDHNQAGQALQAMNGRSLLDREMR 106
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
VN+A + P + + F++F+ +LS E + LRE F++ G DV A++I
Sbjct: 107 VNWA-VDASQPGDSRKQETSRHFHVFVGDLSSEVDSTKLREAFLAFG-DVSEAKIIRDTA 164
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++ GYGFVS+ ++ AE AI G+ R +R
Sbjct: 165 TNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRT 201
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T E+ LF Q+G ++ L ++ + +G FV + A A+
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEE 290
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L EF+ + L V A+ K K + + + A F NLFI NL + L
Sbjct: 291 LNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKL 350
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F G +++ + D S G+GFV F S + A A++ ++ G+PL VA
Sbjct: 351 KEEFAPYG--TITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVA 407
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G A+V + A+ L E GR ++ +++ P ++ K + N+FI N
Sbjct: 92 GYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERD-----PAIRKK--GSGNIFIKN 144
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L K L E F + G +V+S +V +N S G+GFV FK + A+ AI A G L
Sbjct: 145 LHPAIDNKALHETFSTFG-EVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGML 202
Query: 262 FMGRPLRVA 270
G + VA
Sbjct: 203 MNGLEVYVA 211
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G VL ++++ +RG FV +A A+ + G +
Sbjct: 150 DNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVY 209
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + KK+ ++ N+++ N+ E ++ + F S+ ++VSA + D
Sbjct: 210 V-AMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLF-SQYGEIVSA-ALEKDA 266
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
+ G+GFV+F A A+ GK F + L V +++
Sbjct: 267 EGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQK 308
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF + G ++ +S+ + G FV +PD+A A+ +
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF-----------PPVQPKPFATFNLFIANLSFEARAK 209
++ Y G K+ ++ +KK + K + NL++ NL +A
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLD-DAIDD 315
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
D+ E +V+SA+V+ D+ RS G+GFV F A A++A +GK+ +PL V
Sbjct: 316 DMLRRSFGEYGNVISAKVMRSDDG-RSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYV 374
Query: 270 APSRQ 274
+ +++
Sbjct: 375 SMAQR 379
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P++A AL + GR +++ +++
Sbjct: 36 FSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALETMNFDIVHGRPIRIMWSQ-- 93
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ P A N+F+ NL+ +K L F G ++VS ++ D +S GY
Sbjct: 94 -RRP----STSRVAAGNVFVKNLNGSVNSKALYNKFSVFG-NIVSCKLAV-DEQSKSKGY 146
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++++ A AI G +F G+ + V
Sbjct: 147 GFVQFETEEAARKAIDGTNGVIFEGKRIYVG 177
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ ++T ED+ +F ++GT+ + + ++R FV SPD+A A+ L +
Sbjct: 306 KNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKK 365
Query: 166 ------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFI 216
+ GR K + ++ K F + NL++ NL LRE F
Sbjct: 366 INDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFS 425
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ G +++ I D S G GFVSF +++ A A++ GK+ G+PL VA
Sbjct: 426 NFGK--ITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVA 477
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 18/197 (9%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALN 159
T L ++ T + LF Q G V+ + + + R+ G A+V +P +A A+
Sbjct: 122 TSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAME 181
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L + ++V Y+ ++P + + N+FI NL K L + F + G
Sbjct: 182 ALNFAPLNNKPIRVMYSN---RDP----SSRRSGSANIFIKNLDKTIDNKTLHDTFSAFG 234
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
++S +V D+ +S G+GFV ++ ++ A++A+ + G L +P+ V P F R Q
Sbjct: 235 A-ILSCKVAM-DDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGP---FLRKQ 289
Query: 280 TKEGLHSDETSDDLNIN 296
+ D +SD N
Sbjct: 290 ER-----DNSSDKAKFN 301
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+P T +L++ +L L E F S+ VVS V N RRS GY +V++ +
Sbjct: 117 QPLPTTSLYVGDLEANVTDSQLYELF-SQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMD 175
Query: 250 AETAISAFQGKLFMGRPLRV 269
A A+ A +P+RV
Sbjct: 176 AARAMEALNFAPLNNKPIRV 195
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
++Y L +N+ T + +R LF G + ++ ++G FV+ + +EA+
Sbjct: 399 DKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEAS 458
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKK 181
AL + G+ L V +A+ K++
Sbjct: 459 QALTEMNGKMISGKPLYVAFAQRKEE 484
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ ++ E+ LF ++G + L S+ + RG F+ A A++
Sbjct: 219 TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDE 278
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L +F G+TL V A+ K K + + + A + NLFI NL + L
Sbjct: 279 LNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKL 338
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
++ F G +++ + D S G+GFV F + + A AI+ +L G+PL VA
Sbjct: 339 KDEFAPFG--TITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVA 395
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ +RG FV + +A A+ + + + V + + K
Sbjct: 146 FSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAW-HVSK 204
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K+ ++ N+++ N+ E ++ + F G +++ V+ D+ + G+G
Sbjct: 205 KDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGK--ITSAVLEKDSEGKLRGFG 262
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
F++F+ A A+ F G+ L V +++
Sbjct: 263 FINFEDHSTAARAVDELNESDFRGQTLYVGRAQK 296
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 15/192 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T++ ED++ F +G++ + +++G FV SPD A AA+
Sbjct: 202 TNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEK 261
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L F + V A+ K K F + + NL++ NL + + L
Sbjct: 262 LNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKL 321
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+E F SE + S +V+ D S G GFV+F + + A A++ GK+ +PL VA
Sbjct: 322 KELF-SEFGSITSCKVML-DQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAV 379
Query: 272 SRQF----ARLQ 279
+++ ARLQ
Sbjct: 380 AQRREERKARLQ 391
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 120 LFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ I + R + G A+V +P +A A+ L G+ +++ +
Sbjct: 42 LFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELLNFTPLNGKAIRI---MV 98
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L+E F S G V+S +V DN +S G
Sbjct: 99 SHRDP----SMRKSGHANVFIKNLDTSIDNKALQETFASFG-PVLSCKVAV-DNNGQSKG 152
Query: 239 YGFVSFKSKKVAETAISAFQGKL------FMGRPLR 268
YGFV F++++ A++AI+ G L F+GR +R
Sbjct: 153 YGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVR 188
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E+ L +N+ E ++ LF + G++ ++ + + ++G FV +P+E
Sbjct: 298 RYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEE 357
Query: 154 ATAALNNLESYEFEGRTLKVNYAK 177
A+ ALN + + L V A+
Sbjct: 358 ASRALNGMNGKMIGKKPLYVAVAQ 381
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P + +F +HG+V+ + L+ ++R FV+ + + A +
Sbjct: 177 TNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEK 236
Query: 161 LESYEFEGRT---------------LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
L EFEG+ LKV + K+K + + + + NL++ NL
Sbjct: 237 LHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHE------RNQRYQGVNLYVKNLDDS 290
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR--RSAGYGFVSFKSKKVAETAISAFQGKLFM 263
LRE F G ++ S++V+ + RS G+GFV F S + A A++ G++
Sbjct: 291 ITDDILREHFAPYG-NITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 349
Query: 264 GRPLRVA 270
+PL VA
Sbjct: 350 SKPLYVA 356
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 7/175 (4%)
Query: 110 WT--STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
WT ST + F G +L +++++ ++G FV + + A A+ L+
Sbjct: 91 WTRLSTTKCCTIPFSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMN 150
Query: 168 GRTLKVNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
+ + V K + + + K F N+FI NL E L E F G V+S
Sbjct: 151 DKKVFVGRFKSRGERVREYGDRAKQFT--NVFIKNLPAEWDDAKLTEVFGEHG-SVMSVA 207
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
+ +N + S +GFVSF++ + AE + K F G+ + V +++ A Q +
Sbjct: 208 LATDENGK-SRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAE 261
>gi|410914728|ref|XP_003970839.1| PREDICTED: uncharacterized protein LOC101079913 [Takifugu rubripes]
Length = 577
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 70 FHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD 129
+ +T P D A+++E E +L N+P +T +++ LF +G +
Sbjct: 19 IRLNGSTLSPLAD-----ALDSEMSGE---NVKLFVGNLPIDATQDELNKLFAPYGEINT 70
Query: 130 IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
L R AFVT+ A A+ +L+ E+ GR L V ++ + N
Sbjct: 71 CSLL-------RQYAFVTLKGEGAADRAIRHLDGKEYRGRPLVVEESRARPPN------- 116
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEG----WDVVSAEVIFHDNPRRSAGYGFVSFK 245
+ +F+ N+S A DL F S G D V A + + GY FV +
Sbjct: 117 ----STKVFVGNISATCSADDLHGLFASFGRVLDCDKVKARLC------SNVGYAFVHME 166
Query: 246 SKKVAETAISAFQGKLFMGRPLRV 269
K+ A AI A G +F GR L V
Sbjct: 167 RKEEAMAAIDALNGTMFKGRQLAV 190
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E R + T++ N+ T + +D+ LF G VLD + N G AFV M
Sbjct: 109 ESRARPPNSTKVFVGNISATCSADDLHGLFASFGRVLDCDKVKARLCSNVGYAFVHMERK 168
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIK 179
+EA AA++ L F+GR L V +K +
Sbjct: 169 EEAMAAIDALNGTMFKGRQLAVELSKAQ 196
>gi|225561960|gb|EEH10240.1| nucleic acid-binding protein [Ajellomyces capsulatus G186AR]
Length = 325
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 13/201 (6%)
Query: 90 NTEQREEEYSKTR----LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
N QRE E + + N+ + T ED++ + GT+ + + S+ +RG A+
Sbjct: 102 NESQREREPLPIKPNETIYVGNLFFEVTAEDLKRDMAKFGTIYSVRIVYDSRGMSRGFAY 161
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
V S + A AA++ + +EGR + VNY+ +N P T LFI NLSFE
Sbjct: 162 VQFDSVEAAEAAISEMNMSIYEGRRIVVNYS---TRNSAAPRTRASEPTKTLFIGNLSFE 218
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
++L + F + +V V R G+ F + A+ A+ + K GR
Sbjct: 219 MTDRELNDLF-RDIPNVDDVRVSVDKRTGRPRGFAHADFLDVESAKAAMEILKEKAPYGR 277
Query: 266 PLRVAPSRQFARLQTKEGLHS 286
PLR+ S L TK+ L S
Sbjct: 278 PLRLDYS-----LNTKDMLAS 293
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 3/168 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNL 161
L N+ T E + LF Q G V ++ + N AFV ++A+ AL ++
Sbjct: 40 LFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQASQALQSM 99
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
+ R ++VN+A ++ P +P+ F++F+ +LS E + LRE F+ G +
Sbjct: 100 NGRQLLEREMRVNWA-VEPNQPGDRNKPETSRHFHVFVGDLSAEIDSTKLREAFLPFG-E 157
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V A++I + ++ GYGFVS+ ++ AE AI G+ R +R
Sbjct: 158 VSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRT 205
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 18/206 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++RE KT+ + +N+ T+T ED++ +F ++G + + ++R FV
Sbjct: 196 QERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNF 255
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPVQPK---PFATFNLFI 199
+PD+A ++ L F+ G+ K + +++ K F + F NL++
Sbjct: 256 ENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLNLYV 315
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL L+E F SE + S +V+ N S G GFV++ + + A A++ G
Sbjct: 316 KNLDDSITDDKLKELF-SEFGTITSCKVMRDPN-GVSKGSGFVAYSTAEEASKALTEMNG 373
Query: 260 KLFMGRPLRVAPSR----QFARLQTK 281
K+ + +PL VA ++ + ARLQ +
Sbjct: 374 KMIVSKPLYVALAQRKEERRARLQAQ 399
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
++ T L ++ T + LF Q G ++ I + + R+ G +V + +A
Sbjct: 25 QFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAA 84
Query: 156 AALNNLESYEFEGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
AL L G+ +++ Y+ I+K N++I NL K L
Sbjct: 85 QALEVLNFTPVNGKPIRIMYSYRDPTIRKS-----------GAGNIYIKNLDKAIDNKAL 133
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+ F + G +++S +V D+ +S GYGFV F +++ A+ AI G L + + V P
Sbjct: 134 HDTFSAFG-NILSCKVA-TDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGP 191
Query: 272 SRQFARLQTKE 282
F R Q +E
Sbjct: 192 ---FLRRQERE 199
>gi|259013331|ref|NP_001158376.1| Hu/elav protein [Saccoglossus kowalevskii]
gi|32307761|gb|AAP79277.1| Hu/elav [Saccoglossus kowalevskii]
Length = 357
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 26/181 (14%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTV---------------LDIELS-MHSKNRN 140
E SKT L+ +P T T E+I++LF G + DI+ S + ++
Sbjct: 33 EDSKTNLIINYLPQTMTQEEIKSLFSSIGEIESCKLIRDKVTGTCPADIQESEFAERGQS 92
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G AFV +A A+N L + +T+KV+YA+ P Q A NL++
Sbjct: 93 LGYAFVNYHKAADAEKAINTLNGLRLQAKTIKVSYAR-------PSSQAIKDA--NLYVC 143
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L KDL E F S G ++++ ++ S G GF+ F + AE AI + G
Sbjct: 144 GLPKTMAQKDLEEMFTSCG-RIITSRILCDSVTGHSRGVGFIRFDKRTEAEEAIKRYNGT 202
Query: 261 L 261
+
Sbjct: 203 I 203
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ S N+ +G FVTM + DEA A+ L Y R L+V++
Sbjct: 294 LFGPFGAVTNVKVMRDFSTNKCKGFGFVTMTNYDEAVVAIAXLNGYALGARVLQVSFKTN 353
Query: 179 KKK 181
K K
Sbjct: 354 KHK 356
>gi|367000405|ref|XP_003684938.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
gi|357523235|emb|CCE62504.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
Length = 442
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 8/188 (4%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D S N E S L N+ + E ++ F+ G + ++++ ++ KN +
Sbjct: 60 DDSDVVPANAINGGRETSDKILYVGNLDKSINEETLKQYFQIGGPISNVKV-INDKNNSV 118
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV +A A NL E + LK+N+A ++ + FNLF+ +
Sbjct: 119 NYAFVEYLQHHDADVAFKNLNGKTIETKVLKINWAFQSQQTT------SDESLFNLFVGD 172
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L+ + + L F SE V A V++ RS GYGF+SF +++ A+TA+ Q
Sbjct: 173 LNVDVDDETLGHAF-SEFPSFVQAHVMWDMQTGRSRGYGFISFSNQEDAQTAMDKMQSTE 231
Query: 262 FMGRPLRV 269
GR +R+
Sbjct: 232 LNGRQIRI 239
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 92 EQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++RE K + +N+ T+T ED++ +F ++GT+ + ++R FV
Sbjct: 196 QERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNF 255
Query: 149 GSPDEATAALNNLESYEFE------GRTLKVNYAKIKKKNPFPPVQPK---PFATFNLFI 199
+PD+A ++ L F+ G+ K + +++ K F + F NL++
Sbjct: 256 ENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYV 315
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL L+E F SE + S +V+ N S G GFV+F + + A A++ G
Sbjct: 316 KNLDDSITDDKLKELF-SEFGTITSCKVMRDPN-GVSRGSGFVAFSTAEEASRALTEMNG 373
Query: 260 KLFMGRPLRVAPSR----QFARLQTK 281
K+ + +PL VA ++ + ARLQ +
Sbjct: 374 KMVVSKPLYVALAQRKEERRARLQAQ 399
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
++ T L ++ T + LF QHG V+ I + + R+ G +V + +A
Sbjct: 25 QFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAA 84
Query: 156 AALNNLESYEFEGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A+ L G+ +++ Y+ I+K T N++I NL K L
Sbjct: 85 QAIEVLNFTPVNGKPIRIMYSYRDPTIRKS-----------GTGNIYIKNLDKAIDNKAL 133
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+ F + G ++S +V D+ +S GYGFV F +++ A+ AI G L + + V P
Sbjct: 134 HDTFSAFG-SILSCKVA-TDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGP 191
Query: 272 SRQFARLQTKE 282
F R Q +E
Sbjct: 192 ---FLRKQERE 199
>gi|17647581|ref|NP_523957.1| lark, isoform A [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| lark, isoform B [Drosophila melanogaster]
gi|24659971|ref|NP_729238.1| lark, isoform C [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| lark, isoform D [Drosophila melanogaster]
gi|24659981|ref|NP_729240.1| lark, isoform E [Drosophila melanogaster]
gi|62510825|sp|Q94901.1|LARK_DROME RecName: Full=RNA-binding protein lark
gi|1518654|gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| lark, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila melanogaster]
gi|23094008|gb|AAN12053.1| lark, isoform B [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| lark, isoform C [Drosophila melanogaster]
gi|23094010|gb|AAN12055.1| lark, isoform D [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| lark, isoform E [Drosophila melanogaster]
gi|220946850|gb|ACL85968.1| lark-PA [synthetic construct]
gi|220956448|gb|ACL90767.1| lark-PA [synthetic construct]
Length = 352
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ + ++RALFE++GTV++ ++ KN FV M + + A+ NL
Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDV---VKN----YGFVHMETEQQGRDAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
Y +KV AK ++ P T +F+ NL+ + RA ++RE F G
Sbjct: 61 NGYTLNEFAIKVEAAKSRRAPNTP--------TTKIFVGNLTDKTRAPEVRELFQKYGT- 111
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ + YGFV + AI G++ G+PL+V S +R++ K
Sbjct: 112 VVECDIVRN--------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS--TSRVRPK 161
Query: 282 EGLHSDE 288
G+ E
Sbjct: 162 PGMGDPE 168
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 19/197 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
++ ++RE+E + T + +N T E + +FE++G++ + M ++RG
Sbjct: 175 ISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKD-GKSRGF 233
Query: 144 AFVTMGSPDEATAALNNLESYE-------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF- 195
FV +PD A A+ L + E + GR K N +++ K F ++ + +
Sbjct: 234 GFVAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYH 293
Query: 196 --NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR+ F G + SA+V+ + RS G+GFV F + A A
Sbjct: 294 GVNLYVKNLDDTIDDERLRKEFAPYG-TITSAKVMLDEG--RSKGFGFVCFSAPDEATKA 350
Query: 254 ISAFQGKLFMGRPLRVA 270
++ G++ +PL VA
Sbjct: 351 VTEMNGRIVGSKPLYVA 367
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 21/164 (12%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDTIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL + K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
D +S GYGFV F++++ A T+I G K+F+GR
Sbjct: 131 A-QDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGR 173
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F +GT+ ++ M + R++G FV +PD
Sbjct: 287 ERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKV-MLDEGRSKGFGFVCFSAPD 345
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKK 181
EAT A+ + + L V A+ K++
Sbjct: 346 EATKAVTEMNGRIVGSKPLYVALAQRKEE 374
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF + G ++ +S+ + G FV +PD+A A+ +
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF-----------PPVQPKPFATFNLFIANLSFEARAK 209
++ Y G K+ ++ +KK + K + NL++ NL
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDD 316
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LR F E +V+SA+V+ D+ RS G+GFV F A A++A +GK+ +PL V
Sbjct: 317 MLRRSF-GEYGNVISAKVMRSDDG-RSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYV 374
Query: 270 APSRQ 274
+ +++
Sbjct: 375 SMAQR 379
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P++A AL + GR +++ +++
Sbjct: 36 FSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALETMNFDIVHGRPIRIMWSQ-- 93
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ P A N+F+ NL+ +K L F G ++VS ++ D +S GY
Sbjct: 94 -RRP----STSRVAAGNVFVKNLNGSVNSKALYNKFSVFG-NIVSCKLAV-DEQSKSKGY 146
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++++ A AI G +F G+ + V
Sbjct: 147 GFVQFETEEAARKAIDGTNGVIFEGKRIYVG 177
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 20/219 (9%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR--NRGLAFVTMG 149
++R + T +N+P T D+R FE G V + + M N NRG FV
Sbjct: 243 QERPDIEDWTNCYVKNLPTQWTDADLRREFEPFGQV-NSAVVMKDPNSATNRGFGFVNYE 301
Query: 150 SPDEATAALNNLESYEFEGRT---LKVNYAKIKKK-----------NPFPPVQPKPFATF 195
D A AA+ L F+G L++ K +K+ + + +
Sbjct: 302 DADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGV 361
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL++ NL + ++LRE F + G +++ + D+ S G+GFV F + + A TA++
Sbjct: 362 NLYVKNLDDLLQDEELREAFTNYG--TITSARVMRDSTGNSRGFGFVCFSTPEEAATAVA 419
Query: 256 AFQGKLFMGRPLRVA-PSRQFARLQTKEGLHSDETSDDL 293
GKL G+P+ VA R+ R E H+ + L
Sbjct: 420 EMNGKLITGKPVYVAFAQRKEVRRAQLEAQHAQRATGVL 458
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 114 HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173
E + +F ++G + + + + +G FV PD A A+++L EG LK+
Sbjct: 246 QEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKL 305
Query: 174 NYAKIKKKN-----------PFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ + +KK+ + + + NL++ N+ E + LR F S G +
Sbjct: 306 SVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGT-I 364
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ +N RS G+GFV F+ + A A++ K+ +PL VA
Sbjct: 365 TSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYVA 411
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 10/174 (5%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATA 156
YS L ++ T + F G VL I + + +R + G A+V P +A
Sbjct: 49 YSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 108
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+ + GR +++ +++ ++P + N+FI NL K + + F
Sbjct: 109 ALDTMNFETIHGRPMRIMWSQ---RDP----AARRAGNGNIFIKNLDRVIDNKSIYDTFS 161
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G +++S +V D S GYGFV F++++ A+ AI G L G+ + V
Sbjct: 162 LFG-NILSCKVA-ADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVG 213
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R + Y L +N+ T E +RA F GT+ ++ + R++G FV P
Sbjct: 329 QERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKP 388
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EATAA+ + S + L V A+ K+
Sbjct: 389 EEATAAVTEMNSKMMGSKPLYVALAQRKE 417
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 3/168 (1%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ ++ I F G +L +++ +RG FV + + A A+ +
Sbjct: 145 KNLDRVIDNKSIYDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGML 204
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
G+ + V + + + + N+F+ N + L + F G +++
Sbjct: 205 LSGKKVYVGKFQTRAQR-LKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGE--ITS 261
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
V+ D + G+GFV++ A+ A+ K G L+++ R
Sbjct: 262 AVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCR 309
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 27/187 (14%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + + LF++ G V + LS+ ++RG FV + ++A A+
Sbjct: 247 TNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEE 306
Query: 161 LESYEFEGRTLKV-----------------NYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
L E++ R L V AK+ K N + + NLF+ NL
Sbjct: 307 LHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGI--------NLFVKNLD 358
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
+ + LR+ F G + SA+++ DN +S G+GFV F S A AI+ ++
Sbjct: 359 DDIDDERLRQEFSIYGT-ITSAKIMVDDNG-KSKGFGFVCFSSPDEATKAITEMNQRMVS 416
Query: 264 GRPLRVA 270
G+PL VA
Sbjct: 417 GKPLYVA 423
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y+ L +N+ E +R F +GT+ ++ + +++G FV SPDEAT
Sbjct: 346 KYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATK 405
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + G+ L V A+ K
Sbjct: 406 AITEMNQRMVSGKPLYVALAQRK 428
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATA-----ALNNLESYEFEGRTLKV 173
LF G V I + + R+ G A+V + + AL+ L +G+ ++
Sbjct: 90 LFNNIGAVASIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTGERALDELNYTLIKGKPCRI 149
Query: 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP 233
+++ ++P + T N+FI NL K L + F + G ++S +V D
Sbjct: 150 MWSQ---RDP----SLRKTGTGNVFIKNLDASIDNKALHDTFTAFG-SILSCKVAV-DEL 200
Query: 234 RRSAGYGFVSFKSKKVAETAI 254
S GYGFV +K+ + AE AI
Sbjct: 201 GNSKGYGFVHYKTSESAEAAI 221
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 14/198 (7%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRN 140
D+S ++++E T V + + W E ++ FE G V + + ++
Sbjct: 273 DASETQDSKRTKKQDEEPATLFVGR-LSWNIDDEWLQREFEPLGGVTGARVIYEKASGKS 331
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK--NP-------FPPVQPKP 191
RG +V + +A AL + E +GR + ++ ++ K + NP F V P
Sbjct: 332 RGYGYVDFETKSQAQHALKEYQGREIDGRPINLDMSESKPRPSNPRFDRAKQFGDVPSAP 391
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+T LFI NLSF A+ +L + F G VVS + H + ++ G+G++ F + A+
Sbjct: 392 SST--LFIGNLSFNAQRDNLYDIFGEYGR-VVSCRMPTHPDTQQPKGFGYIEFSTVDEAK 448
Query: 252 TAISAFQGKLFMGRPLRV 269
A+ A G+ GRP R+
Sbjct: 449 AALEALNGEYVEGRPCRL 466
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + +++ +F ++G V+ + H + +G ++ + DEA AAL L
Sbjct: 395 LFIGNLSFNAQRDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEAL 454
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
EGR +++++ ++ + P +P+
Sbjct: 455 NGEYVEGRPCRLDFSTPRENSNRPSPRPQ 483
>gi|158295088|ref|XP_316007.4| AGAP005964-PB [Anopheles gambiae str. PEST]
gi|157015868|gb|EAA10943.4| AGAP005964-PB [Anopheles gambiae str. PEST]
Length = 365
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTM 148
NT Q+ E+ SKT L + + +T +D+ + Q+G ++ + + + N+ +G FV
Sbjct: 5 NTPQQTEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGNIISTKAILDKTTNKCKGYGFVDF 64
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
SP A A+ L++ + ++ AK ++++P NL+IANL +
Sbjct: 65 ESPSCAEGAVKGLQA-----KGIQAQMAKQQEQDP-----------TNLYIANLPLNYKE 108
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
D+ E +S+ V+S I D +S G GF +S+ E I F G L
Sbjct: 109 TDV-ENLLSKYGQVISTR-ILRDQNAQSKGVGFARMESRDKCEQIIQIFNGTLL 160
>gi|158295086|ref|XP_001688763.1| AGAP005964-PA [Anopheles gambiae str. PEST]
gi|157015867|gb|EDO63769.1| AGAP005964-PA [Anopheles gambiae str. PEST]
Length = 453
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTM 148
NT Q+ E+ SKT L + + +T +D+ + Q+G ++ + + + N+ +G FV
Sbjct: 93 NTPQQTEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGNIISTKAILDKTTNKCKGYGFVDF 152
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
SP A A+ L++ + ++ AK ++++P NL+IANL +
Sbjct: 153 ESPSCAEGAVKGLQA-----KGIQAQMAKQQEQDP-----------TNLYIANLPLNYKE 196
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
D+ E +S+ V+S I D +S G GF +S+ E I F G L
Sbjct: 197 TDV-ENLLSKYGQVISTR-ILRDQNAQSKGVGFARMESRDKCEQIIQIFNGTLL 248
>gi|221112748|ref|XP_002162771.1| PREDICTED: ELAV-like protein 3-like [Hydra magnipapillata]
Length = 376
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGL 143
S +N EQ ++ + T L+ +P T E++R LF G + +L R + G
Sbjct: 29 SGYPLNLEQDPDDENPTNLIINYLPQEMTEEELRTLFSSVGPLESCKLIRDKVTRASLGY 88
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
AFV +A A+ +L+ + +T+KV+ A+ P NL+++ L
Sbjct: 89 AFVNYQHAADARKAIESLQGMKLTNKTIKVSVAR-------PSC--TEIKNANLYVSGLP 139
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
DLRE F S G +++ +V++ ++ +S G GFV F + AE AI+ ++
Sbjct: 140 LTCNENDLRELFASYG-SIITIKVLYEES-GQSRGVGFVRFDKRNDAEAAINGLNNRI 195
>gi|448114345|ref|XP_004202551.1| Piso0_001392 [Millerozyma farinosa CBS 7064]
gi|359383419|emb|CCE79335.1| Piso0_001392 [Millerozyma farinosa CBS 7064]
Length = 422
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 11/205 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-N 140
+SS A+AV+ + E S T L + + + + +R LF G V I+ +++ KNR
Sbjct: 56 ESSPASAVDGGR---EISNTILYVGGLHKSVSEDVLRDLFSSCGGVKSIK-TLNDKNRPG 111
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
AFV + D A AL L +K+N+A + Q +PF FN+F+
Sbjct: 112 FSYAFVEFENSDSADLALRTLNGRMVNNSVIKINWA-YQSSAVSTASQHEPF--FNIFVG 168
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+LS E + L + F S+ + A V++ RS GYGFVSF ++ AE A+ G+
Sbjct: 169 DLSPEVDDESLHKAF-SKFESLRQAHVMWDMQTSRSRGYGFVSFGNQVDAELALQTMNGE 227
Query: 261 LFMGRPLRV--APSRQFARLQTKEG 283
GR +R A +QF + + G
Sbjct: 228 WIGGRAIRCNWASHKQFNNPKFRAG 252
>gi|345489599|ref|XP_003426177.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Nasonia vitripennis]
Length = 445
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVT 147
V E ++E K +L + W +T E+++ F ++G V+D + +S+ R+RG FVT
Sbjct: 3 VKNEMDDDE--KGKLFVGGLSWETTQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVT 60
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEA 206
P L N ++ +GRT+ K NP +PK F +F+ L
Sbjct: 61 FSDPSNVGLVLQN-GPHQLDGRTIDP-----KPCNPRTLQKPKRSGGFPKVFLGGLPSNV 114
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
DLR FF G V+ +++ ++S G+GF+SF+ + + +
Sbjct: 115 TETDLRSFFQRFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVG 162
>gi|168053751|ref|XP_001779298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669310|gb|EDQ55900.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 18/181 (9%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNN 160
+++ +P+ T DI F++ GT+ +++ ++ + +G+AF+T + + A A+
Sbjct: 1 KVMVGGMPYYITENDIHEFFQECGTIAELDCMTFPDTGKFKGIAFITFRTEEAAKRAMA- 59
Query: 161 LESYEFEGRTLKVNYAKIKK---------KNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
L++ + GR LK+ KIK K P P QP A + I NLS++ K++
Sbjct: 60 LDAADMGGRFLKIEMCKIKPLEVGNKPLFKEP-PKKQPGCLAAY---IGNLSYDITEKEV 115
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
R FF +G + S + G+G + F + E A+ Q L +GRPL++A
Sbjct: 116 RRFF--KGCKIESVRFAENKETGEFRGFGHIDFADDESLEAAMKLDQEPL-LGRPLKIAY 172
Query: 272 S 272
S
Sbjct: 173 S 173
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF+++G L +++ ++RG F++ ++A A+ ++ E G+T+ V
Sbjct: 205 ERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ + RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + D A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGDDMNDERLKELFDKYG-KTLSVKVM-TDPTGKSRGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GF+S++ + A A+ G G+ + V
Sbjct: 234 GFISYEKHEDANKAVEDMNGTELNGKTVFVG 264
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M + R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEEGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|325185984|emb|CCA20488.1| RNAbinding protein putative [Albugo laibachii Nc14]
Length = 754
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
T Q + +Y+ RL +N+P+++ ED+R +FE G V ++ + + R +G FV+ +
Sbjct: 233 TAQNKADYACNRLFVRNLPFSAVEEDLRTIFEAFGKVAEVHIPLDETKRRKGFGFVSFDT 292
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
+A AL N++ F+GR L V +A+ K P + P
Sbjct: 293 VSDAQKALQNVDGIAFQGRVLYVTFAEAK-----PEITADPL 329
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
+A LF+ NL F A +DLR F E + V+ I D +R G+GFVSF + A+
Sbjct: 240 YACNRLFVRNLPFSAVEEDLRTIF--EAFGKVAEVHIPLDETKRRKGFGFVSFDTVSDAQ 297
Query: 252 TAISAFQGKLFMGRPLRV 269
A+ G F GR L V
Sbjct: 298 KALQNVDGIAFQGRVLYV 315
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 72 FSATTQD-PFVDSSSAAAVNTEQREEEY-------SKTRLVAQNVPWTSTHEDIRALFEQ 123
SA+ Q P +D S ++++ E S ++++ +NV + +T DIR+L
Sbjct: 606 LSASEQSSPIIDGHSLRVTLSQKKVERKTSDKDGKSTSKIIIRNVAFEATVHDIRSLCGA 665
Query: 124 HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
G + + + R+RG AFV + EA A N+L GR L + +A+
Sbjct: 666 FGQLKRVRMPKKFDGRHRGFAFVEFMTEQEAKDAFNSLCKSHLYGRHLVLEWAE 719
>gi|260940561|ref|XP_002614580.1| hypothetical protein CLUG_05358 [Clavispora lusitaniae ATCC 42720]
gi|238851766|gb|EEQ41230.1| hypothetical protein CLUG_05358 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 25/189 (13%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + N+P++ T + ++ L G+V+ ++ + ++RG V +PDEA AA+
Sbjct: 136 TEVFVGNLPFSVTWQTLKDLMRSVGSVVRADVMTNKWGKSRGFGTVVFETPDEAAAAVEK 195
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---------------LFIANLSFE 205
+ Y+ EGR + + + + PKP + + ++ ANL +
Sbjct: 196 FQGYQMEGRAIDIRPGRDQA--------PKPVSKNSDLTEGVVGNGEVGPAIYAANLPYI 247
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
DL E F + G VV AE+ ++ R S G V F+S ++A +AI G + GR
Sbjct: 248 TSQTDLFELFETIGR-VVRAEIQYNAKGRPS-GNAVVEFESAELATSAIQNLHGYNYGGR 305
Query: 266 PLRVAPSRQ 274
L ++ +R+
Sbjct: 306 DLHISYARK 314
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250
P +F+ NL F + L++ S G VV A+V+ + +S G+G V F++ A
Sbjct: 132 PAPGTEVFVGNLPFSVTWQTLKDLMRSVG-SVVRADVMTN-KWGKSRGFGTVVFETPDEA 189
Query: 251 ETAISAFQGKLFMGRPLRVAPSRQFA 276
A+ FQG GR + + P R A
Sbjct: 190 AAAVEKFQGYQMEGRAIDIRPGRDQA 215
>gi|448112471|ref|XP_004202105.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
gi|359465094|emb|CCE88799.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
Length = 406
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 34/196 (17%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P++ T +DI+ LF+ ++ ++ + S+ R+RG+A V + ++ A++ + YEF
Sbjct: 107 NIPFSCTSKDIQELFKDDFQLIKADI-VTSRGRSRGMATVEFSNKEDVAKAISKFDHYEF 165
Query: 167 EGRTL--KVNY----AKIKKKNPF----------------------PPVQPKPFATFNLF 198
GR + + +Y K K +P PPV PKP +F
Sbjct: 166 LGREIFVRQDYPPPSDKRKDDSPREDSFSKGYNERNSRSAVSTRDQPPV-PKPGTE--IF 222
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL F + L++ + E +VV A+V DN +S G+G V F +++ A A+ FQ
Sbjct: 223 VGNLPFSINWQALKD-LMREAGEVVRADVR-TDNWGKSRGFGTVVFNTEEEAAKAVEYFQ 280
Query: 259 GKLFMGRPLRVAPSRQ 274
G GR L P R+
Sbjct: 281 GYEIEGRRLDTRPGRK 296
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
+ A N+PW + +D+ LFE G V EL ++ K + G A + + A A+ NL+
Sbjct: 330 IFASNLPWATNEDDLYELFETIGKVSRAELQLNEKGKPSGNAVIQFEQEENADIAIANLD 389
Query: 163 SYEFEGRTLKVNYAK 177
+Y + GR LK+ YAK
Sbjct: 390 NYNYGGRDLKITYAK 404
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 17/190 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + N+P++ + ++ L + G V+ ++ + ++RG V + +EA A+
Sbjct: 219 TEIFVGNLPFSINWQALKDLMREAGEVVRADVRTDNWGKSRGFGTVVFNTEEEAAKAVEY 278
Query: 161 LESYEFEGRTL------KVNYAKIKK--KNPFPP-------VQPKPFATFNLFIANLSFE 205
+ YE EGR L K NYA + + P V + + +F +NL +
Sbjct: 279 FQGYEIEGRRLDTRPGRKSNYADDENEAQQALPSNTDFTDNVVGEGDRSNTIFASNLPWA 338
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
DL E F + G V AE+ ++ + S G + F+ ++ A+ AI+ + GR
Sbjct: 339 TNEDDLYELFETIG-KVSRAELQLNEKGKPS-GNAVIQFEQEENADIAIANLDNYNYGGR 396
Query: 266 PLRVAPSRQF 275
L++ +++
Sbjct: 397 DLKITYAKKL 406
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ ++ N+ ++ ++ ALFE++G VL+ + R AFV M EAT A+
Sbjct: 7 RMKIFVGNIDERTSEGEVTALFERYGAVLNCAVM-------RQYAFVHMRGTREATKAVE 59
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L E G+ + V +K P+P T+ +F+ N+S A ++R+ F G
Sbjct: 60 ELNGRELNGKKMLVELSK-----------PRPQNTWKIFVGNVSSSCEAAEIRKIFEEYG 108
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL- 278
V+ +++ Y FV + A AI A GK G+ + V S + R
Sbjct: 109 R-VLECDIV--------KDYAFVHMTRESEARAAIEALNGKDIKGKRINVEMSNKVQRSG 159
Query: 279 QTKEGLHSDETSDD 292
G HS DD
Sbjct: 160 GANGGSHSRRRPDD 173
>gi|254572962|ref|XP_002493590.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|238033389|emb|CAY71411.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|328354581|emb|CCA40978.1| Nuclear localization sequence-binding protein [Komagataella
pastoris CBS 7435]
Length = 362
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
T L + W+ E ++ FE G V+ + M + R+RG +V + A AL
Sbjct: 126 TTLFVGRLSWSIDDEWLKKEFEHIGGVVGARVMMERATGRSRGYGYVDFDNKASAEKALE 185
Query: 160 NLESYEFEGRTLKVNYAKIKKKNP----------FPPVQPKPFATFNLFIANLSFEARAK 209
++ E +GR + V+ + K P + + P T LF+ NLSF+A
Sbjct: 186 EMQGKEIDGRPINVDMSNSKPAAPAARNNDRASQYGDKRSPPSDT--LFLGNLSFQADRD 243
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G +V S + H + G+G+V F S A A+ A G+ RP+R+
Sbjct: 244 TLFELFSKHG-NVTSVRIPTHPETEQPKGFGYVQFSSVDEATGALEALNGEYVDNRPIRL 302
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E I+ F Q+G V+ +++ ++G FV+ +P+ A A +
Sbjct: 216 TNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKES 275
Query: 161 LESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATF-------NLFIANLSFEARAKDL 211
+ +TL V A K ++K + + N++I N++ E L
Sbjct: 276 MNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKSNGSNVYIKNINDEVGDDAL 335
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
RE F +E ++ SA+ I D S G+GFV + + + A+ A+S +G +F G+PL VA
Sbjct: 336 RERF-NEFGNITSAK-IMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAI 393
Query: 272 SRQ 274
+++
Sbjct: 394 AQR 396
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 18/199 (9%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
++ LF + G +L +++ + +RG FV + A A++ NL + F GR L V A
Sbjct: 142 LQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV--A 199
Query: 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
KK+ + NL++ NL + + ++ F G V+S +++ D+ S
Sbjct: 200 TFIKKSERSTNNDDKYT--NLYMKNLDDDITEELIKLKFSQYGL-VISVKIMKRDDGT-S 255
Query: 237 AGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA-RLQTKEGLHSDETSDDL-- 293
G+GFVSF++ + A+ A + G L + L VA +++ A R Q + LH ++ ++ +
Sbjct: 256 KGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITK 315
Query: 294 ---------NINAEEADTA 303
NIN E D A
Sbjct: 316 SNGSNVYIKNINDEVGDDA 334
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+F+ NL+ L+E F G D++S +V +++ S GYGFV F ++ A+ +I
Sbjct: 127 NVFVKNLNDLVDNVSLQELFCKFG-DILSCKVAKNEDGT-SRGYGFVQFALQESADASIQ 184
Query: 256 AFQGKLFMGRPLRVA 270
F GR L VA
Sbjct: 185 NLNNSHFCGRQLHVA 199
>gi|448115025|ref|XP_004202729.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
gi|359383597|emb|CCE79513.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
Length = 406
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P++ T +DI+ LF+ ++ ++ + S+ R+RG+A V + ++ T A++ + YEF
Sbjct: 107 NIPFSCTSKDIQELFKDDFQLIKADI-VTSRGRSRGMATVEFSNKEDVTKAISKFDHYEF 165
Query: 167 EGRTLKVNYA----KIKKKNPFPPVQ-----------------------PKPFATFNLFI 199
GR + V K+K+ P + PKP +F+
Sbjct: 166 LGREIFVRQDYPPPSDKRKDDSPQAESFSRGYNERNSRSTTSTRDQSLIPKPGTE--IFV 223
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL F + L++ G +VV A+V DN +S G+G V F +++ A A+ FQG
Sbjct: 224 GNLPFSINWQALKDLMRVTG-EVVRADVR-TDNWGKSRGFGTVVFNTEEEAAKAVEYFQG 281
Query: 260 KLFMGRPLRVAPSRQ 274
GR L P R+
Sbjct: 282 YEIEGRRLDTRPGRK 296
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
E E S T + A N+PW + +D+ LFE G V EL ++ K + G A + + A
Sbjct: 323 EGERSNT-IFASNLPWATNEDDLYELFETIGKVSRAELQLNEKGKPSGNAVIQFEQEENA 381
Query: 155 TAALNNLESYEFEGRTLKVNYAK 177
A+ NL++Y + GR LK+ +A+
Sbjct: 382 DVAIANLDNYNYGGRDLKITFAR 404
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + N+P++ + ++ L G V+ ++ + ++RG V + +EA A+
Sbjct: 219 TEIFVGNLPFSINWQALKDLMRVTGEVVRADVRTDNWGKSRGFGTVVFNTEEEAAKAVEY 278
Query: 161 LESYEFEGRTL------KVNYAKIKK--KNPFPP-------VQPKPFATFNLFIANLSFE 205
+ YE EGR L K NYA + + P V + + +F +NL +
Sbjct: 279 FQGYEIEGRRLDTRPGRKSNYADDESDAQQALPSNTDFTDNVVGEGERSNTIFASNLPWA 338
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
DL E F + G V AE+ ++ + S G + F+ ++ A+ AI+ + GR
Sbjct: 339 TNEDDLYELFETIG-KVSRAELQLNEKGKPS-GNAVIQFEQEENADVAIANLDNYNYGGR 396
Query: 266 PLRVAPSRQF 275
L++ +R+
Sbjct: 397 DLKITFARKL 406
>gi|317036141|ref|XP_001397700.2| pre-RNA splicing factor Srp2 [Aspergillus niger CBS 513.88]
gi|358368362|dbj|GAA84979.1| pre-RNA splicing factor Srp2 [Aspergillus kawachii IFO 4308]
Length = 301
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T F + ++ L E +
Sbjct: 58 VVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTIFRMMVSGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
DL++F G DVV +E R G GFV F++ +TAI G+ F G
Sbjct: 117 DLKDFARQSGLDVVYSETG------RELGRGFVEFETANDLKTAIEKLDGREFKG 165
>gi|115396600|ref|XP_001213939.1| predicted protein [Aspergillus terreus NIH2624]
gi|114193508|gb|EAU35208.1| predicted protein [Aspergillus terreus NIH2624]
Length = 282
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 14/195 (7%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EE K + N+ + T ED+R E++G V + ++ ++ +RG +V + + A
Sbjct: 93 EEPTPKETVYVGNLFYDVTAEDLRKQMEKYGVVEQVFITFDNRGISRGFGYVQFDTIESA 152
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A++ + FEGR + V YA + N P +P AT L+I NLSFE +DL E
Sbjct: 153 KRAISAMHMRVFEGRRVVVQYA---QNNVAPQRSMRP-ATRTLYIGNLSFETTDRDLNEL 208
Query: 215 FISEGWDVVSAEVIFHDNPRRSA---GYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
F DVV+ + RR+ G+ F + + A K GR LR+
Sbjct: 209 F----RDVVNVIDVRVSVDRRTGLFRGFAHAEFINVESARIGYEILSRKTPYGRKLRIDY 264
Query: 272 S---RQFARLQTKEG 283
S R+ R+ EG
Sbjct: 265 SETNRRADRIPGAEG 279
>gi|32482385|gb|AAP84382.1| FCA protein [Triticum aestivum]
Length = 700
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDE---ATA 156
+L + P T+ +D+R LFE HG VL++ L K +G FV + +E A
Sbjct: 105 VKLFVGSAPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIR 164
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+N + ++V A +K+ LF+A+L+ +A AK++ E F
Sbjct: 165 ALHNQCTIPGAMGPVQVRCADGEKER-------HGSIEHKLFVASLNKQATAKEIEEIFA 217
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A A+++ G M
Sbjct: 218 PFGH--VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIM 262
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T E+ LF ++G VL L + +G FV ++A A+
Sbjct: 216 TNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEE 275
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L EF+ +TL V+ A+ K K + + + A + NLF+ NL + L
Sbjct: 276 LNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKL 335
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F G + S V+ DN + S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 336 KEEFAPYGT-ITSVRVMRTDNGK-SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G+V I + + + G A+V + A+ L +GR ++ +++
Sbjct: 54 IFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQLNYTPIKGRLCRIMWSQR 113
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
P ++ K + N+FI NL + K L E F G +++S++ I D +S G
Sbjct: 114 D-----PALRKK--GSGNIFIKNLHPDIDNKALFETFSVFG-NILSSK-IATDETGKSKG 164
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+GFV F+ + A+ AI A G L G+ + VAP
Sbjct: 165 FGFVHFEHESSAKEAIDALNGMLLNGQEIYVAP 197
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + E ++ F +GT+ + + +++G FV +P+EAT
Sbjct: 315 KYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATK 374
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ G+ L V A+ K
Sbjct: 375 AITEKNQQIVAGKPLYVAIAQRK 397
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W+ E +R FE G V+ + M S ++RG +V S A AL
Sbjct: 200 LFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDSKSAAEKALQEY 259
Query: 162 ESYEFEGR--TLKVNYAKIKKKNP-------FPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ E +GR L ++ K NP F V P T LF+ NLSF A L
Sbjct: 260 QGKELDGRPINLDMSTGKPHASNPNTDRAKQFGDVPSAPSDT--LFVGNLSFNAERDSLF 317
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G VVS + H + ++ G+G+V F S A+ A+ A G+ GR R+
Sbjct: 318 NTFGEYG-TVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYLDGRACRL 373
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + + + F ++GTV+ + H + +G +V S DEA AAL L
Sbjct: 302 LFVGNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 361
Query: 162 ESYEFEGRTLKVNYA 176
+GR +++++
Sbjct: 362 NGEYLDGRACRLDFS 376
>gi|406868018|gb|EKD21055.1| RNA binding domain containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 426
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T EDI+ FE G + + ++ ++ ++G +V S ++ATAA+
Sbjct: 237 NLLFDITQEDIQREFESFGPIKSVTIASDNRGLSKGFGYVEFESIEQATAAIEGKNQAVL 296
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR L VNY +++P +P + LFI NL+FE DL + F + +V+
Sbjct: 297 EGRRLVVNYMNKSQRSP-AGAEPVNEPSKTLFIGNLAFEMSDADLNKLF-RDIRNVIDVR 354
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V + G+ F + A A GK GR LR+
Sbjct: 355 VAIDRRTGQPRGFAHADFVDVESAIKGKDALLGKEVYGRTLRI 397
>gi|238879474|gb|EEQ43112.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 399
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W ++ FE G V+ + M + ++RG +V S A AL +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 162 ESYEFEGRTLKVNYAKIK---------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ E +GR + ++ + K + + Q P T LFI NLSF A +L
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT--LFIGNLSFNANRDNLF 287
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G +V+S V H + ++ G+G+V F S A+ A+ A G+ GRP R+
Sbjct: 288 NVFGEYG-NVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRL 343
>gi|68473894|ref|XP_719050.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|68474099|ref|XP_718946.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440741|gb|EAL00044.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440849|gb|EAL00151.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
Length = 400
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W ++ FE G V+ + M + ++RG +V S A AL +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 162 ESYEFEGRTLKVNYAKIK---------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ E +GR + ++ + K + + Q P T LFI NLSF A +L
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT--LFIGNLSFNANRDNLF 287
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G +V+S V H + ++ G+G+V F S A+ A+ A G+ GRP R+
Sbjct: 288 NVFGEYG-NVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRL 343
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T + + ALF Q G + ++ +H + FV + +A++A+ +
Sbjct: 15 LYVGNLDSGVTEDLVCALFSQMGQIKGCKI-IHEPGSDP-YCFVEFVNHSDASSAITAMN 72
Query: 163 SYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW 220
+ GR L+VN+A I+++ P P K ++F+ +LS + DLRE F G
Sbjct: 73 ARMCLGRELRVNWASSAIQQQTPHRPDTSK---HHHIFVGDLSPQIETSDLREAFSPFG- 128
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++ V+ ++S GYGFVSF +K+ AE AI G R +R
Sbjct: 129 EISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRT 177
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+ ++ N+ ++ ++ ALFE++G VL+ + R AFV M EAT A+
Sbjct: 67 RMKIFVGNIDERTSEGEVTALFERYGAVLNCAVM-------RQYAFVHMRGTREATKAVE 119
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L E G+ + V +K P+P T+ +F+ N+S A ++R+ F G
Sbjct: 120 ELNGRELNGKKMLVELSK-----------PRPQNTWKIFVGNVSSSCEAAEIRKIFEEYG 168
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL- 278
V+ +++ Y FV + A AI A GK G+ + V S + R
Sbjct: 169 -RVLECDIV--------KDYAFVHMTRESEARAAIEALNGKDIKGKRINVEMSNKVQRSG 219
Query: 279 QTKEGLHSDETSDD 292
G HS DD
Sbjct: 220 GANGGSHSRRRPDD 233
>gi|332019312|gb|EGI59819.1| RNA-binding protein 39 [Acromyrmex echinatior]
Length = 528
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 7/197 (3%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
PF S +N E EE + + D+ F G V D+ L +K
Sbjct: 147 PFGKGHSPLGINDELTPEERDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKT 206
Query: 139 RN-RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK---NPFPPVQPKP-FA 193
R +G+A+V P+ T AL L + G + V + + +K N P + PK
Sbjct: 207 RRFKGIAYVEFKDPESVTLALG-LSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG 265
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
L++ +L F LR F G + + ++I RS GYGF++F++ A+ A
Sbjct: 266 PMRLYVGSLHFNITEDMLRGIFEPFG-KIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 324
Query: 254 ISAFQGKLFMGRPLRVA 270
+ G GRP++V
Sbjct: 325 LEQLNGFELAGRPMKVG 341
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTL 171
T + ++ +FE++GT+ ++ + ++RG FV PD A A+ L E EG+ +
Sbjct: 175 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 234
Query: 172 KVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDV 222
V A+ K K F ++ + + NL++ NL + LR+ F G +
Sbjct: 235 YVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFG-TI 293
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ + RS G+GFV F + + A A++ G++ + +PL VA
Sbjct: 294 TSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 339
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
D S GYGFV F++++ A +I G L G+
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++RE KT+ + +N+ ++T ED+ +F +G + + + ++R F+
Sbjct: 205 QERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINF 264
Query: 149 GSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPPVQPKP---FATFNLFI 199
SPD+A A+ L + + GR K + +I+ K F + NL++
Sbjct: 265 KSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYM 324
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL L E F + G +++ I D S G GFV+F +++ A A++ G
Sbjct: 325 KNLDDSIGDDQLCELFSNYGK--ITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNG 382
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 383 KMISGKPLYVA 393
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 121 FEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F+ G V+ + + + R+ G +V +P +A AL L G+ ++V Y+
Sbjct: 58 FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALELLNFAPLNGKPIRVMYSN-- 115
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + + N+FI NL K L + F + G +++S +V D +S G+
Sbjct: 116 -RDP----SSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-NILSCKVA-TDEMGQSKGF 168
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
GFV + + A++AI + G L +P+ V P F R Q +E
Sbjct: 169 GFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP---FLRKQERE 208
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Query: 64 KVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQ 123
KV+ + + PF S A +E T + +N+ + + + L +
Sbjct: 155 KVNGMMINNQKVFVGPFKSSKERGAT------QEVKYTNVFIKNLSEDVSEQQLTDLLQA 208
Query: 124 HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKK 181
HG + ++ + K +++G F D A A+ N F G+ + V A K++++
Sbjct: 209 HGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAVENENGKMFSGKVIYVGRAQKKLERE 268
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
+ NL+I NL + LR F + G + S++V+ D S G+GF
Sbjct: 269 AELKHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYGT-ITSSKVMRDDKGSSSKGFGF 327
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V + + A A++ G++ +PL VA
Sbjct: 328 VCYSTPDEASKAVAEMHGRMVGSKPLYVA 356
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 77/153 (50%), Gaps = 10/153 (6%)
Query: 120 LFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F Q G V ++ + ++ R+ A++ + +A AL+ L + +G+ ++ +++
Sbjct: 27 VFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALDTLNNTPIKGKACRIMWSQ- 85
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L + F + G +++S +V+ D S G
Sbjct: 86 --RDP----SLRKSGIGNIFIKNLDKTVDHKALYDTFSAFG-NILSCKVV-TDETNTSKG 137
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+GFV ++S++ AE AI+ G + + + V P
Sbjct: 138 FGFVHYESQESAEKAIAKVNGMMINNQKVFVGP 170
>gi|254576977|ref|XP_002494475.1| ZYRO0A02398p [Zygosaccharomyces rouxii]
gi|238937364|emb|CAR25542.1| ZYRO0A02398p [Zygosaccharomyces rouxii]
Length = 410
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 7/188 (3%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
+++ N + E S L N+ + T E +R F+ G + ++++ + N
Sbjct: 37 ETTPVVPANATKGGRETSDRVLYVGNLDKSITEEVLRQYFQVGGQISNVKVMIDKNNARA 96
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
AFV +A AL L + E +++N+A + + P T+NLF+ +
Sbjct: 97 NYAFVEYFKSHDANIALQTLNGKQIENNVVRINWA-FQSQQALPDEN-----TYNLFVGD 150
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
LS + + L F S + V++ S GYGFVSF ++ A+ A+ + Q +
Sbjct: 151 LSVDVDDETLCNAFRSFP-SFIQGHVMWDMQTGGSRGYGFVSFGDQEQAQLAMDSMQSQE 209
Query: 262 FMGRPLRV 269
GRPLR+
Sbjct: 210 LNGRPLRI 217
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182
RG FV+ G ++A A+++++S E GR L++N+A K++N
Sbjct: 185 RGYGFVSFGDQEQAQLAMDSMQSQELNGRPLRINWAS-KREN 225
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + E+ M + +++G FV +P+EA A+ L EG LK++
Sbjct: 227 ETLEKLFAKFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 285
Query: 175 ----------YAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+A++KKK+ + + + NL++ NL L++ F S G ++
Sbjct: 286 VCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYG-NIT 344
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ +N R S G+GFV F+ + A +A++ K+ +PL VA
Sbjct: 345 SAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 390
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G VL I + + R + G A+V P +A A++ +
Sbjct: 40 HPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALH 99
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G+ +++ +++ ++P + N+FI NL K + + F G +++S +V
Sbjct: 100 GKPMRIMWSQ---RDP----AMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG-NILSCKV 151
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A+ AI G L G+ + V
Sbjct: 152 AI-DEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG 193
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R ++Y L +N+ T + ++ FE +G + ++ R++G FV P+
Sbjct: 309 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 368
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT+A+ + S + L V A+ K+
Sbjct: 369 EATSAVTEMNSKMVCSKPLYVAIAQRKE 396
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T++ ED++ F +G + + +++G FV SPD A AA+
Sbjct: 212 TNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEK 271
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L F + V A+ K K F + + NL++ NL + + L
Sbjct: 272 LNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKL 331
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+E F SE + S +V+ D S G GFV+F + + A A++ GK+ +PL VA
Sbjct: 332 KELF-SEFGSITSCKVML-DQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAV 389
Query: 272 SRQF----ARLQ 279
+++ ARLQ
Sbjct: 390 AQRREERKARLQ 401
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 120 LFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ I + R + G A+V +P +A+ A+ L G+ +++ +
Sbjct: 52 LFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMELLNFTPLNGKAIRI---MV 108
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L+E F S G V+S +V DN +S G
Sbjct: 109 SHRDP----SMRKSGHANVFIKNLDTSIDNKALQETFASFG-SVLSCKVAV-DNNGQSKG 162
Query: 239 YGFVSFKSKKVAETAISAFQGKL------FMGRPLR 268
YGFV F++++ A++AI+ G L F+GR +R
Sbjct: 163 YGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVR 198
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + ++ ++ F G+VL ++++ + +++G FV + + A +A+N L
Sbjct: 126 KNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGML 185
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V ++ PK N+++ NLS +DL++FF + +++
Sbjct: 186 INDKEVFVGRFVRHQERIEATGSPK---FTNVYVKNLSETTSDEDLKKFF--SNYGAITS 240
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
++ D +S G+GFV+F+S A A+ G F
Sbjct: 241 AIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTF 277
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E+ L +N+ E ++ LF + G++ ++ + + ++G FV +P+E
Sbjct: 308 RYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEE 367
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKK 181
A+ ALN + + L V A+ +++
Sbjct: 368 ASRALNGMNGKMIGKKPLYVAVAQRREE 395
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E I+ F Q+G V+ +++ ++G FV+ +P+ A A +
Sbjct: 216 TNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKES 275
Query: 161 LESYEFEGRTLKVNYA--KIKKKNPFPPVQPKPFATF-------NLFIANLSFEARAKDL 211
+ +TL V A K ++K + + N++I N++ E L
Sbjct: 276 MNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDAL 335
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
RE F +E ++ SA+ I D S G+GFV + + + A+ A+S +G +F G+PL VA
Sbjct: 336 RERF-NEFGNITSAK-IMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAI 393
Query: 272 SRQ 274
+++
Sbjct: 394 AQR 396
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 18/199 (9%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
++ LF + G +L +++ + +RG FV + A A++ NL + F GR L V A
Sbjct: 142 LQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHV--A 199
Query: 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236
KK+ + NL++ NL + + ++ F G V+S +++ D+ S
Sbjct: 200 TFIKKSERSTNNDDKYT--NLYMKNLDDDITEELIKLKFSQYGL-VISVKIMKRDDGT-S 255
Query: 237 AGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA-RLQTKEGLHSDETSDDL-- 293
G+GFVSF++ + A+ A + G L + L VA +++ A R Q + LH ++ ++ +
Sbjct: 256 KGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITK 315
Query: 294 ---------NINAEEADTA 303
NIN E D A
Sbjct: 316 SNGSNVYIKNINDEVGDDA 334
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+F+ NL+ L+E F G D++S +V +++ S GYGFV F ++ A+ +I
Sbjct: 127 NVFVKNLNDLVDNVSLQELFCKFG-DILSCKVAKNEDGT-SRGYGFVQFALQESADASIQ 184
Query: 256 AFQGKLFMGRPLRVA 270
F GR L VA
Sbjct: 185 NLNNSHFCGRQLHVA 199
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 91/206 (44%), Gaps = 13/206 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T + + + LF Q G+V ++ N AFV +A+ AL +
Sbjct: 44 LYVGNLDPTVSEDFVATLFNQIGSVTKTKVIFDGAND--PYAFVEFSDHAQASQALQTMN 101
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEG 219
R +KVN+A P QP T F++F+ +LS E + LRE F G
Sbjct: 102 KRLLLDREMKVNWA------VEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFG 155
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
DV A+VI N +S GYGFVS+ ++ AE AI G+ R +R + + Q
Sbjct: 156 -DVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQ 214
Query: 280 TKEGLHSDETSDDLNINAEEADTADV 305
K +H +E S D N D V
Sbjct: 215 EKP-VHYNEKSYDEIYNQTSGDNTSV 239
>gi|307180960|gb|EFN68748.1| RNA-binding protein 39 [Camponotus floridanus]
Length = 529
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 7/197 (3%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
PF S +N E EE + + D+ F G V D+ L +K
Sbjct: 148 PFGKGHSPLGINDELTPEERDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKT 207
Query: 139 RN-RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK---NPFPPVQPKP-FA 193
R +G+A+V P+ T AL L + G + V + + +K N P + PK
Sbjct: 208 RRFKGIAYVEFKDPESVTLALG-LSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG 266
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
L++ +L F LR F G + + ++I RS GYGF++F++ A+ A
Sbjct: 267 PMRLYVGSLHFNITEDMLRGIFEPFG-KIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 325
Query: 254 ISAFQGKLFMGRPLRVA 270
+ G GRP++V
Sbjct: 326 LEQLNGFELAGRPMKVG 342
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 13/213 (6%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTM 148
N++Q +E +L N+ + + + LF G V + +++ H+ ++G FV
Sbjct: 381 NSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQY 440
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP-------KPFATFNLFIAN 201
SP A A+ +L +GR ++V + I P V+ K NL++ N
Sbjct: 441 SSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCN 500
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
+ K L E F+ G + A V+ + + GYGF+ F + A AI+A G L
Sbjct: 501 MPSSIDTKKLVELFLPFG-KITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGAL 559
Query: 262 FMGRPLRVAPSRQFARLQTKEGLHSDETSDDLN 294
G + V + A L + + +T+ D+N
Sbjct: 560 VGGEMIIV----RVAGLSPSASISAVQTTQDIN 588
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 6/177 (3%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEA 154
+E T L N+P + + LF G ++ + ++G FV P A
Sbjct: 292 KEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCA 351
Query: 155 TAALNNLESYEFEGRTLKVNYAKI--KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ A+ + EGR L+V A + N P + A L++ NLS L
Sbjct: 352 SEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMA--KLYVCNLSLSMNTDRLI 409
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F+ G +V +A+V S GYGFV + S A A+ G+L GR + V
Sbjct: 410 HLFLPFG-EVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEV 465
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 179 KKKNPFPPVQP------KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
KK+ PP P K NL++ NL + L E F+ G +V + V+
Sbjct: 275 KKQEHTPPSFPQDGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFG-QIVRSRVVDDCF 333
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
S GYGFV + + A AI G+L GR L V
Sbjct: 334 TGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEV 370
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 20/190 (10%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
S +A+++ Q ++ +K+RL N+P + T + + LF G + + +++
Sbjct: 573 SPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------Y 625
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP----FPPVQPKPFATFNLFI 199
+ V A A+ +++ Y EG+ L V +++ N P++ A NL++
Sbjct: 626 SLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMA--NLYV 683
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G VV A + R YG V F + A AI G
Sbjct: 684 GRVPSSLTEDQFIDLFRPFGR-VVQARMF------RFQRYGMVRFDNPSCAAAAIDHLDG 736
Query: 260 KLFMGRPLRV 269
G L V
Sbjct: 737 YQIGGSILAV 746
>gi|212704871|ref|ZP_03312999.1| hypothetical protein DESPIG_02938 [Desulfovibrio piger ATCC 29098]
gi|212671713|gb|EEB32196.1| hypothetical protein DESPIG_02938 [Desulfovibrio piger ATCC 29098]
Length = 88
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW +T E ++ LF ++G VL ++L S R RG FV M EA AA+ L++Y
Sbjct: 9 NLPWAATEEQVQDLFAEYGKVLSVKLVSDRETGRARGFGFVEM-EDGEAQAAIEALDNYS 67
Query: 166 FEGRTLKVNYAKIKKKNPFPP 186
F GRTL+VN A K + P PP
Sbjct: 68 FGGRTLRVNEA--KPRAPRPP 86
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ ++ E+ LF ++G + L S+ + RG FV A A++
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L EF+G+ L V A+ K K + + + A + NLF+ NL + L
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F G + SA+V+ D S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 339 KEEFAPFGT-ITSAKVM-RDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV--NYAKI 178
F G +L +++ +RG FV + +A A+ ++ + + V + +K
Sbjct: 146 FSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKK 205
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++ V+ K F N+++ N+ E ++ E F G +++ V+ D+ + G
Sbjct: 206 DRQSKLEEVKAK-FT--NVYVKNIDQETSQEEFEELFGKYGK--ITSAVLEKDSEGKLRG 260
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS-RQFARLQ 279
+GFV+F+ A A+ F G+ L V + +++ RLQ
Sbjct: 261 FGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQ 302
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 13/190 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T +D LFEQ G V + + ++RG FV + +EA A+
Sbjct: 229 TNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVET 288
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E+ GR L V+ A+ K + + + + + + NL+I NL + + L
Sbjct: 289 LHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERL 348
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV-- 269
R+ F E + +++ + D S G+GFV F S A A++ K+ +PL V
Sbjct: 349 RQEF--EPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSL 406
Query: 270 APSRQFARLQ 279
A R+ R Q
Sbjct: 407 AQRREVRRQQ 416
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R+ G A+V + + AL L +GR ++ +++
Sbjct: 63 IFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKGRACRIMWSQ- 121
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL + K L + F + G +V+S +V D RS G
Sbjct: 122 --RDP----ALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCKVAT-DEHGRSKG 173
Query: 239 YGFVSFKSKKVAETAISAFQGKLF 262
YGFV +++ + AETAI A G L
Sbjct: 174 YGFVHYETAEAAETAIKAVNGMLL 197
>gi|348520155|ref|XP_003447594.1| PREDICTED: hypothetical protein LOC100696008 [Oreochromis
niloticus]
Length = 575
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 32/178 (17%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ +T E++ A+FE +G V+ + R AFV + A A+ L
Sbjct: 8 KLFVGNLALDTTQEELSAIFEPYGQVVSCSVL-------RQFAFVHLQGEGAAERAIREL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
EF GR L V ++ + P + +F+ NLS +DL++ F + G
Sbjct: 61 NGREFRGRNLVVEESRGR-----------PLHSTKVFVGNLSGMCTTEDLQQLFQTFG-- 107
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL-----RVAPSRQ 274
+V+ D + GY FV ++K+ A AI A G F GRPL +V PS+Q
Sbjct: 108 ----KVLECD---KVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQ 158
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E R T++ N+ T ED++ LF+ G VL+ + + +G AFV M
Sbjct: 71 VVEESRGRPLHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECD-------KVKGYAFVHM 123
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+ ++A A+ L F+GR L V +K++
Sbjct: 124 ENKEDALQAIEALHGTSFKGRPLSVELSKVQ 154
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ +F+++G L +++ ++RG FV+ ++A A+ + E G+T+ V
Sbjct: 205 ERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ + RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + D A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGDDMDDERLKEIFDKYG-KTLSVKVM-TDPSGKSRGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ G G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGTELNGKTVFVG 264
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M + R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEEGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 13/190 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T ++ LF+++G V +S+ + +++G FV + DEA A++
Sbjct: 230 TNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDE 289
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L +E +G+ L V+ A+ K + + + + + + NL+I NL + L
Sbjct: 290 LNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKL 349
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV-- 269
R F E + +++ + D +S G+GFV F S A A++ K+ +PL V
Sbjct: 350 RAEF--EPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 407
Query: 270 APSRQFARLQ 279
A R+ R Q
Sbjct: 408 AQRREVRRQQ 417
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 111 TSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169
T T + +F G V I + + R+ G A+V + + AL L + R
Sbjct: 59 TVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKNR 118
Query: 170 TLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF 229
++ +++ ++P + N+FI NL K L + F + G V+S +V
Sbjct: 119 PCRIMWSQ---RDP----ALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGT-VLSCKVA- 169
Query: 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
D RS GYGFV +++ + AE AI A G L
Sbjct: 170 TDETGRSKGYGFVHYETAEAAENAIKAVNGMLL 202
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + +RA FE GT+ ++ K +++G FV SPDEAT
Sbjct: 329 KYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATK 388
Query: 157 ALNNLESYEFEGRTLKVNYAK 177
A+ + + + L V+ A+
Sbjct: 389 AVAEMNNKMIGTKPLYVSLAQ 409
>gi|307194503|gb|EFN76795.1| ELAV-like protein 2 [Harpegnathos saltator]
Length = 349
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 13/192 (6%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + Q +E SKT L+ +P + T ++IR+LF G V +L
Sbjct: 2 ANGMDTVVQQNGGSTLG--QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 59
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A++ L + +T+KV+YA+ P +
Sbjct: 60 RDKLSGQSLGYGFVNYHRPEDAEKAISTLNGLRLQNKTIKVSYAR-------PSSEAIKG 112
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
A NL+++ L +DL F G ++++ ++ + S G GF+ F + AE
Sbjct: 113 A--NLYVSGLPKNMAQQDLENLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRVEAER 169
Query: 253 AISAFQGKLFMG 264
AI G + G
Sbjct: 170 AIQELNGTIPKG 181
>gi|297741610|emb|CBI32742.3| unnamed protein product [Vitis vinifera]
Length = 127
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 60/143 (41%), Gaps = 31/143 (21%)
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNL 197
R+RG FVTM + +E AA YE EGR L+VN PP
Sbjct: 11 GRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGP-------PP----------- 52
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
AR ++ E SE V A VI+ RS G+GFV++ S + AI +
Sbjct: 53 --------ARRENTLETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESL 104
Query: 258 QGKLFMGRPLRVA-----PSRQF 275
G GR +RV P RQF
Sbjct: 105 DGVDLNGRSIRVTMAEARPRRQF 127
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + E+ LF GT+ I L +++G FV + + A A+
Sbjct: 108 TNIYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEE 167
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + + + NLF+ NL ++ L
Sbjct: 168 LNDKEINGQKIYVGRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKL 227
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D +S G+GFV F S + A AI+ ++ +G+PL VA
Sbjct: 228 EEEFKPFG-SITSAKVMV-DEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVA 284
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R +Y L +N+ + E + F+ G++ ++ + +++G FV SP+
Sbjct: 203 ERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPE 262
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIK 179
EAT A+ + G+ L V A+ K
Sbjct: 263 EATKAITEMNQRMILGKPLYVALAQRK 289
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N T + +R +FE +G V L ++ + RG FV EA A++
Sbjct: 241 TNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDA 300
Query: 161 LESYEFE-GRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKD 210
L E E GR L V A+ K+ + + + + + + NLF+ NL
Sbjct: 301 LNEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTK 360
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L+E F G + SA+V+ +D +S G+GFV + + A AI+ ++ MG+PL VA
Sbjct: 361 LKEEFAPYG-KITSAKVMTND-AGKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVA 418
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 113 THEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171
T D+ +F + G V I + + ++ A+V +EA AL+ L + +G+
Sbjct: 72 TESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDTLAFCDIKGKQC 131
Query: 172 KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
++ +++ P ++ K T N+FI NL + K L + F + G ++S + I D
Sbjct: 132 RIMWSQRD-----PSMRKK--GTGNVFIKNLHPDIDNKTLYDTFSTFG-KILSCK-IATD 182
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
S G+GFV + + A+ AI G L + VAP
Sbjct: 183 EHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAP 222
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R +Y L +N+ T ++ F +G + ++ + ++RG FV P
Sbjct: 336 QERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKP 395
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EAT A+N + G+ L V A+ K+
Sbjct: 396 EEATRAINEMHQRMVMGKPLYVALAQRKE 424
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTL 171
T + ++ +FE++GT+ ++ + ++RG FV PD A A+ L E EG+ +
Sbjct: 175 TDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 234
Query: 172 KVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDV 222
V A+ K K F ++ + + NL++ NL + LR+ F G +
Sbjct: 235 YVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFG-TI 293
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ + RS G+GFV F + + A A++ G++ + +PL VA
Sbjct: 294 TSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 339
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
D S GYGFV F++++ A +I G L G+
Sbjct: 131 A-QDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|354544201|emb|CCE40924.1| hypothetical protein CPAR2_109610 [Candida parapsilosis]
Length = 475
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 18/219 (8%)
Query: 61 TPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRAL 120
TPKK + +TT + + S + T EE + + A + W + ++
Sbjct: 200 TPKKRK--IEELESTTTPDYKKAKSESTTTTATDEEPAT---VFAGRLSWNIDDDWLKRE 254
Query: 121 FEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
FE V+ + M + ++RG +V S A A+ ++ E +GR + ++ + +
Sbjct: 255 FEHLEGVIGARVIMERATGKSRGYGYVDFTSKAAAEKAIEEMQGREIDGRPINLDLSTGR 314
Query: 180 ---------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230
+ F Q P T LFI NLSF A L E F G +V+S + H
Sbjct: 315 PHATKPNNDRAKQFGDQQSPPSDT--LFIGNLSFNANRDKLFEIFGEYG-NVISCRLPTH 371
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ ++ G+G+V F S A+ A+ A G+ GRP R+
Sbjct: 372 PDTQQPKGFGYVQFGSVDEAKAALEALNGEYLEGRPCRL 410
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + + + +F ++G V+ L H + +G +V GS DEA AAL L
Sbjct: 339 LFIGNLSFNANRDKLFEIFGEYGNVISCRLPTHPDTQQPKGFGYVQFGSVDEAKAALEAL 398
Query: 162 ESYEFEGRTLKVNYA 176
EGR +++++
Sbjct: 399 NGEYLEGRPCRLDFS 413
>gi|383864352|ref|XP_003707643.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Megachile
rotundata]
Length = 530
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 7/197 (3%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN 138
PF S +N E EE + + D+ F G V D+ L +K
Sbjct: 149 PFGKGVSPLGINDELTPEERDARTVFCMQLSQRIRARDLEDFFSSVGKVQDVRLITCNKT 208
Query: 139 RN-RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK---NPFPPVQPKP-FA 193
R +G+A+V P+ T AL L + G + V + + +K N P + PK
Sbjct: 209 RRFKGIAYVEFKDPESVTLALG-LSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG 267
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
L++ +L F LR F G + + ++I RS GYGF++F++ A+ A
Sbjct: 268 PMRLYVGSLHFNITEDMLRGIFEPFG-KIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 326
Query: 254 ISAFQGKLFMGRPLRVA 270
+ G GRP++V
Sbjct: 327 LEQLNGFELAGRPMKVG 343
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + E+ M + +++G FV +P+EA A+ L EG LK++
Sbjct: 167 ETLEKLFAKFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 225
Query: 175 ----------YAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+A++KKK+ + + + NL++ NL L++ F S G ++
Sbjct: 226 VCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYG-NIT 284
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ +N R S G+GFV F+ + A +A++ K+ +PL VA
Sbjct: 285 SAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 330
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R ++Y L +N+ T + ++ FE +G + ++ R++G FV P+
Sbjct: 249 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 308
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT+A+ + S + L V A+ K+
Sbjct: 309 EATSAVTEMNSKMVCSKPLYVAIAQRKE 336
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + E+ M + +++G FV +P+EA A+ L EG LK++
Sbjct: 164 ETLEKLFAKFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 222
Query: 175 ----------YAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+A++KKK+ + + + NL++ NL L++ F S G ++
Sbjct: 223 VCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYG-NIT 281
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ +N R S G+GFV F+ + A +A++ K+ +PL VA
Sbjct: 282 SAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 327
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R ++Y L +N+ T + ++ FE +G + ++ R++G FV P+
Sbjct: 246 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 305
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT+A+ + S + L V A+ K+
Sbjct: 306 EATSAVTEMNSKMVCSKPLYVAIAQRKE 333
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+FI NL K + + F G +++S +V D S GYGFV F++++ A+ AI
Sbjct: 58 NIFIKNLDKVIDNKSIYDTFSLFG-NILSCKVAI-DEDGFSKGYGFVHFETEEAAQNAIQ 115
Query: 256 AFQGKLFMGRPLRVA 270
G L G+ + V
Sbjct: 116 KVNGMLLAGKKVFVG 130
>gi|322711864|gb|EFZ03437.1| RNA recognition motif containing protein [Metarhizium anisopliae
ARSEF 23]
Length = 731
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 19/180 (10%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNL 161
L +++P T++ + F QH V + + K + +RG FVT+ D+A AA L
Sbjct: 45 LFVRSLPANVTNDTLADFFSQHFPVKHAVVVVDQKTKESRGYGFVTLADSDDALAAKTTL 104
Query: 162 ESYEFEGRTLKVNYAKIKKKN--------PFPPVQPKPFATFNLFIANLSFEAR-AKDLR 212
+ E+EG+ ++++ A+ +K+N P P + + L + NL + + ++ L
Sbjct: 105 DKAEWEGKRIRIDIAEPRKRNAANSEDTVPKRPGREESQRPPKLIVRNLPWSIKTSEQLS 164
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSA---GYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F S G +V F D P+ G+GFV+ + KK AE A+ GK GR L V
Sbjct: 165 NLFRSYG------KVKFSDLPQSKGKLRGFGFVTIRGKKNAEKALEGVNGKEIDGRTLAV 218
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 94 REEEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
REE +L+ +N+PW+ T E + LF +G V +L SK + RG FVT+
Sbjct: 139 REESQRPPKLIVRNLPWSIKTSEQLSNLFRSYGKVKFSDLP-QSKGKLRGFGFVTIRGKK 197
Query: 153 EATAALNNLESYEFEGRTLKVNYA 176
A AL + E +GRTL V++A
Sbjct: 198 NAEKALEGVNGKEIDGRTLAVDWA 221
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + +++G FV +P++A A+N + Y+ K+
Sbjct: 214 EKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLY 273
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL + LR+ F S G +
Sbjct: 274 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYG-KIT 332
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ DN RS G+GFV F+ A A++ GK+ +PL VA
Sbjct: 333 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 378
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P +A AL+ + G+ +++ +++
Sbjct: 39 FSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDVMYGKPIRIMWSQ-- 96
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V +D S GY
Sbjct: 97 -RDP----SMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCKVA-NDEESNSKGY 149
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++++ A+ AI G L G+ + V
Sbjct: 150 GFVHFETEESAQKAIEKVNGMLLEGKKVYVG 180
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T E +R FE +G + ++ R++G FV PD
Sbjct: 297 ERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPD 356
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 357 EATKAVTEMNGKMMCTKPLYVALAQRKE 384
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + + NV + ED +R +FE++G + ++ +RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A L E EG+ L V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFG-TITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 MNGRIVGTKPLYVA 368
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL + +
Sbjct: 19 HSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGMNFDIIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 172
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP PP P +L++ +L + L E F + G V+S V RRS GY +
Sbjct: 2 NPGPPNYP----MASLYVGDLHSDITEAMLFEKFSTAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALEGMNFDIIKGRPIRI 84
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 43/210 (20%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L N+P+ T +D++ LF Q G V + R+RG VTM +P++A A+
Sbjct: 280 TTLFVGNLPFIITWQDLKDLFRQAGDVAVSHIPTDGSGRSRGFGIVTMTTPEDAAKAIQM 339
Query: 161 LESYEFEGRTLKV------------------NYAKIKKKNPFPPVQ-------------- 188
Y GR L+V ++ + +P P Q
Sbjct: 340 FNRYILSGRQLEVREDRHVFKASKEGEHHEHSHRTTRLDSPAPLTQYGGQHDTGHIRHEH 399
Query: 189 -----PKPFATFN----LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ +A N LF+ NL + ++L++ F S G + + I + RS G+
Sbjct: 400 GYGNRSENYAMKNSGITLFVGNLVYSVIWQELKDLFRSVG--IPTKAEIVTSSSGRSRGF 457
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
GFV+ +++ A AI G F GR + V
Sbjct: 458 GFVTMATQEDANKAIKELNGTEFRGRKIEV 487
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 8/185 (4%)
Query: 94 REEEY----SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
R E Y S L N+ ++ ++++ LF G E+ S R+RG FVTM
Sbjct: 404 RSENYAMKNSGITLFVGNLVYSVIWQELKDLFRSVGIPTKAEIVTSSSGRSRGFGFVTMA 463
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
+ ++A A+ L EF GR ++V K P+ + + NL F R +
Sbjct: 464 TQEDANKAIKELNGTEFRGRKIEVRLDKFGSHESRGI--PEALQGTQVLVGNLPFHMRWQ 521
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
DL++ F + A V RS G G V F++++ A A+S + GR + V
Sbjct: 522 DLKDIFRCVAEPQL-ANVRIDPETGRSQGVGTVRFQTEEDATRALS-LNETVIAGRSIWV 579
Query: 270 APSRQ 274
+Q
Sbjct: 580 QIDKQ 584
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+P A +FI NL F ++KDL++ F ++ V S +V+ H N R S G+G V + ++
Sbjct: 14 QPVAGRQVFIGNLPFTMQSKDLKDVF-NKTAGVTSVKVMSHGNGR-SRGFGLVYCDTPEI 71
Query: 250 AETAISAFQGKLFMGRPLRVAPSR 273
A++ I+ FQG GR + V R
Sbjct: 72 AQSIITQFQGLELKGRQIEVRIDR 95
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P+T +D++ +F + V +++ H R+RG V +P+ A + + + E
Sbjct: 25 NLPFTMQSKDLKDVFNKTAGVTSVKVMSHGNGRSRGFGLVYCDTPEIAQSIITQFQGLEL 84
Query: 167 EGRTLKVNYAKIKKKN 182
+GR ++V ++ + N
Sbjct: 85 KGRQIEVRIDRVNRSN 100
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ NL F +DL++ F G DV + + D RS G+G V+ + + A AI
Sbjct: 282 LFVGNLPFIITWQDLKDLFRQAG-DVAVSHIPT-DGSGRSRGFGIVTMTTPEDAAKAIQM 339
Query: 257 FQGKLFMGRPLRVAPSRQFARLQTKEGLHSDET 289
F + GR L V R + +KEG H + +
Sbjct: 340 FNRYILSGRQLEVREDRHVFKA-SKEGEHHEHS 371
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEA 154
+E SKT L+ +P T T E++++LF G V +L ++ G FV P++A
Sbjct: 22 QEDSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDA 81
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N + +T+KV++A+ P A NL+++ LS +DL
Sbjct: 82 EKAINTFNGLRLQNKTIKVSFAR-------PSSDAIKGA--NLYVSGLSKSMTQQDLENL 132
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F + G ++++ ++ + S G GF+ F + AE AI G
Sbjct: 133 FNAYG-QIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNG 176
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N LE+ + GR+ + + K NL + L ++++ F S
Sbjct: 4 NGLETVQQNGRSGSIGSGQEDSKT-------------NLIVNYLPQTMTQEEVKSLFSSI 50
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
G DV S ++I +S GYGFV++ + AE AI+ F G + ++V+ +R
Sbjct: 51 G-DVESCKLIRDKVTGQSLGYGFVNYHRPEDAEKAINTFNGLRLQNKTIKVSFAR 104
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P + +F +HG+V+ + L+ ++R FV+ + + A +
Sbjct: 192 TNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEK 251
Query: 161 LESYEFEGRT---------------LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
L EFEG+ LKV + K+K + + + + NL++ NL
Sbjct: 252 LHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHE------RNQRYQGVNLYVKNLDDS 305
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPR--RSAGYGFVSFKSKKVAETAISAFQGKLFM 263
LRE F G ++ S++V+ + RS G+GFV F S + A A++ G++
Sbjct: 306 ITDDILREHFAPYG-NITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 364
Query: 264 GRPLRVA 270
+PL VA
Sbjct: 365 SKPLYVA 371
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F Q G VL I + R+ G A+V P++A A++ + E +G+ +++ ++
Sbjct: 31 FSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTMNFDELKGKAIRIMWS--- 87
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+++P + N+FI NL K L + F + G +++S +V + S GY
Sbjct: 88 QRDP----ALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFG-NILSCKVNV-NLAGESKGY 141
Query: 240 GFVSFKSKKVAETAISAFQG------KLFMGR 265
GFV F++++ A AI G K+F+GR
Sbjct: 142 GFVHFETEEAAVKAIEKLDGMLMNDKKVFVGR 173
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ T ++ + F G +L +++++ ++G FV + + A A+ L+
Sbjct: 104 KNLDKTIDNKMLYDTFSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGML 163
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWDVVS 224
+ KV + K + F N+FI NL E L E F G V+S
Sbjct: 164 MNDK--KVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHG-SVMS 220
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
+ +N + S +GFVSF++ + AE + K F G+ + V +++ A Q +
Sbjct: 221 VALATDENGK-SRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAE 276
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + + NV + ED +R +FE++G + ++ +RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A L E EG+ L V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFG-TITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 MNGRIVGTKPLYVA 368
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL + +
Sbjct: 19 HSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGMNFDIIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 172
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP PP P +L++ +L + L E F + G V+S V RRS GY +
Sbjct: 2 NPGPPNYP----MASLYVGDLHSDITEAMLFEKFSTAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALEGMNFDIIKGRPIRI 84
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M R++G FV SP+
Sbjct: 288 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPE 346
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 347 EATKAVTEMNGRIVGTKPLYVALAQRKE 374
>gi|307168947|gb|EFN61833.1| ELAV-like protein 4 [Camponotus floridanus]
Length = 466
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + Q +E SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLG--QTSQEESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ +
Sbjct: 61 RDKLSGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSS---------EAI 111
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
NL+++ L +DL F G + S I DN P S G
Sbjct: 112 KGANLYVSGLPKNMAQQDLENLFSPYGRIITSR--ILCDNITVRQFVTGGGDNLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMG 264
GF+ F + AE AI G + G
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTIPKG 195
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ ++RG FV
Sbjct: 221 KEREKELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFV 280
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L E EG+ + V A+ K K F ++ + + N
Sbjct: 281 AFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN 340
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + A A++
Sbjct: 341 LYVKNLDDTIDDERLRKEFTPFG-TITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTE 397
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 398 MNGRIVGSKPLYVA 411
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 77/170 (45%), Gaps = 12/170 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ T T + I LF Q G+V ++ N AFV +A+ AL +
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEG 219
R +KVN+A P Q T F++F+ +LS E + LRE F G
Sbjct: 106 KRLLLDREMKVNWA------VEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFG 159
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
DV A+VI N +S GYGFVS+ ++ AE AI G+ R +R
Sbjct: 160 -DVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 208
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++RE KT+ + +N+ ++T ED+ +F +G + + + ++R F+
Sbjct: 206 QERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINF 265
Query: 149 GSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPPVQPKP---FATFNLFI 199
SPD+A A+ L + + GR K + +I+ K F + NL++
Sbjct: 266 KSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYM 325
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL L E F + G +++ I D S G GFV+F +++ A A++ G
Sbjct: 326 KNLDDSIGDDQLCELFSNYGK--ITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNG 383
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 384 KMISGKPLYVA 394
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 13/181 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNL 161
L ++ + T + LF Q G V+ + + S R+ G A+V +P +A AL L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ ++V Y+ ++P + + N+FI NL K L + F + G +
Sbjct: 101 NFAPLNGKPIRVMYSN---RDP----SSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-N 152
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
++S +V D +S G+GFV + + A++AI + G L +P+ V P F R Q +
Sbjct: 153 ILSCKVA-TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP---FLRKQER 208
Query: 282 E 282
E
Sbjct: 209 E 209
>gi|116191833|ref|XP_001221729.1| hypothetical protein CHGG_05634 [Chaetomium globosum CBS 148.51]
gi|88181547|gb|EAQ89015.1| hypothetical protein CHGG_05634 [Chaetomium globosum CBS 148.51]
Length = 792
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 28/193 (14%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAA 157
S +L +++P +T E + F QH V + + K + +RG FV+ PD+A A
Sbjct: 38 SNRQLFVRSLPPNATSESLTEFFSQHYPVKHATVVVDPKTKFSRGYGFVSFADPDDAAEA 97
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPP----------VQPKPFATF-------NLFIA 200
+ L++ F GR LK++ A+ + +NP V+ K A L I
Sbjct: 98 KDKLKNELFSGRRLKLDIAQSRHRNPTKSGSEALTKAAEVKRKRQADLEEARKAPKLIIR 157
Query: 201 NLSFEARAKD-LREFFISEGWDVVSAEVIFHD---NPRRSAGYGFVSFKSKKVAETAISA 256
NL + + D L + F S G +V F D N + +G+GFV+ + +K AE AI A
Sbjct: 158 NLPWSIKTSDQLAKLFQSFG------KVKFSDLPNNKGKLSGFGFVTLRGRKNAEKAIEA 211
Query: 257 FQGKLFMGRPLRV 269
GK GR L V
Sbjct: 212 INGKEVDGRTLAV 224
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 95 EEEYSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
EE +L+ +N+PW+ T + + LF+ G V +L ++K + G FVT+
Sbjct: 146 EEARKAPKLIIRNLPWSIKTSDQLAKLFQSFGKVKFSDLP-NNKGKLSGFGFVTLRGRKN 204
Query: 154 ATAALNNLESYEFEGRTLKVNYA 176
A A+ + E +GRTL V++A
Sbjct: 205 AEKAIEAINGKEVDGRTLAVDWA 227
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 183 PFPPVQP-KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
P PP + + + LF+ +L A ++ L EFF S+ + V A V+ + S GYGF
Sbjct: 27 PNPPSKKARVESNRQLFVRSLPPNATSESLTEFF-SQHYPVKHATVVVDPKTKFSRGYGF 85
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEG 283
VSF A A + +LF GR L++ ++ R TK G
Sbjct: 86 VSFADPDDAAEAKDKLKNELFSGRRLKLDIAQSRHRNPTKSG 127
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 77 QDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-H 135
++P + A +TE E S T V + + W ++ + F+ GTV+ + M
Sbjct: 90 EEPAQTPAKKAKTDTEAGE---SNTVFVGR-LSWNVDNDWLAQEFQGCGTVVAARVQMDR 145
Query: 136 SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP------FPPVQP 189
+ ++RG A+V SP EA A+ + + +GR + V+ ++ ++ NP F +
Sbjct: 146 NSGKSRGFAYVEFSSPAEAQKAVEEMNGKQIDGREVNVDISQPRQPNPEKRAQVFGDSES 205
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+P T LF+ NLS+ L F G DV + + G+G+V F ++
Sbjct: 206 QPSTT--LFVGNLSWNTTEDGLWTAFGEFG-DVTHVRLPTDQESGKPKGFGYVEFGDQEG 262
Query: 250 AETAISAFQGKLFMGRPLRV 269
A A A +GK GR LR+
Sbjct: 263 ATKAYEAMKGKDLDGRTLRL 282
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 81 VDSSSAAAVNTEQR------EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-S 133
VD S N E+R E T L N+ W +T + + F + G V + L +
Sbjct: 183 VDISQPRQPNPEKRAQVFGDSESQPSTTLFVGNLSWNTTEDGLWTAFGEFGDVTHVRLPT 242
Query: 134 MHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+ +G +V G + AT A ++ + +GRTL+++Y++
Sbjct: 243 DQESGKPKGFGYVEFGDQEGATKAYEAMKGKDLDGRTLRLDYSQ 286
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++RE KT+ + +N+ ++T ED+ +F +G + + + ++R F+
Sbjct: 206 QERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINF 265
Query: 149 GSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPPVQPKP---FATFNLFI 199
SPD+A A+ L + + GR K + +I+ K F + NL++
Sbjct: 266 KSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYM 325
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL L E F + G +++ I D S G GFV+F +++ A A++ G
Sbjct: 326 KNLDDSIGDDQLCELFSNYGK--ITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNG 383
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 384 KMISGKPLYVA 394
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 13/181 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNL 161
L ++ + T + LF Q G V+ + + S R+ G A+V +P +A AL L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ ++V Y+ ++P + + N+FI NL K L + F + G +
Sbjct: 101 NFAPLNGKPIRVMYSN---RDP----SSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-N 152
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
++S +V D +S G+GFV + + A++AI + G L +P+ V P F R Q +
Sbjct: 153 ILSCKVA-TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP---FLRKQER 208
Query: 282 E 282
E
Sbjct: 209 E 209
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EE+Y T L +N+ + + +R F + G ++ + ++ RG AFV +P++A
Sbjct: 197 EEKY--TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPV--QPKPFATF-NLFIANLSFE 205
A + +F + L V A+ K + F + K A N+++ N++
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
++LR+ F G +++ + D +S G+GFV F + + A A+ F G++F G+
Sbjct: 315 VTEEELRKHFSQCG--TITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGK 372
Query: 266 PLRVAPSRQ 274
PL VA +++
Sbjct: 373 PLYVAIAQK 381
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 13/183 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+P + T+ ++ +F++ G ++ +++ ++RG FV D A AA+ L S
Sbjct: 117 KNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTI 176
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V K KK V+P+ T NL++ NL + LRE F G V A
Sbjct: 177 VADKEIYV--GKFMKKT--DRVKPEEKYT-NLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK------LFMGRPLRVAPSRQFARLQ 279
I D R GY FV+F + + A A G L++GR + A Q R Q
Sbjct: 232 --IAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289
Query: 280 TKE 282
KE
Sbjct: 290 FKE 292
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 92 EQREEEYSKTRLVAQ-------NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
EQ +E++ + +++A+ NV T E++R F Q GT+ +L K +++G
Sbjct: 288 EQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFG 347
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
FV +P+EA A+ F G+ L V A+ K+
Sbjct: 348 FVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKE 383
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V + RE+E + T + +N+ +++ +FE++G++ ++ +RG
Sbjct: 166 VGRKDREKELGQKAKLYTNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGF 225
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAK--------IKKK-NPFPPVQPKPFA 193
FV P+EA A+ L E EG+T V A+ +K+K + + +
Sbjct: 226 GFVAFEDPEEAEKAVTELHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQ 285
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A
Sbjct: 286 GVNLYVKNLDDTIDDERLRKEFSVFG-TITSAKVMMDDG--RSKGFGFVCFSSPEEATKA 342
Query: 254 ISAFQGKLFMGRPLRVA 270
++ G++ +PL VA
Sbjct: 343 VTDMNGRIVGTKPLYVA 359
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQH---GTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G VL I + R+ G A+V + +A AL+ + +
Sbjct: 10 HSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTMNFDILK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GRPMRIMWSQ---RDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D +S GYGFV F+ ++ A +I G L G+ + V
Sbjct: 122 A-QDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVG 163
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M R++G FV SP+
Sbjct: 279 ERMNRYQGVNLYVKNLDDTIDDERLRKEFSVFGTITSAKV-MMDDGRSKGFGFVCFSSPE 337
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ ++ + L V A+ K+
Sbjct: 338 EATKAVTDMNGRIVGTKPLYVALAQRKE 365
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N + + +F ++G L +++ R++G FV+ S ++A AA+++
Sbjct: 225 TNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDD 284
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPV---QPKPFATFNLFIANLSFEARAKDL 211
+ + G+ + V A+ K+ K F + Q + NL+I NL + L
Sbjct: 285 MNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHL 344
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F G + SA+V+ + RS G+GFV F S K A A GKL +PL V+
Sbjct: 345 RKEFSPFG-TITSAKVMMENG--RSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVS 400
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA--------LNNLESY 164
D +AL F G +L ++ + +N ++G FV + + A A LNNL+ +
Sbjct: 145 DNKALYDTFSTFGRILSCKV-ISDENGSKGYGFVHFETQESAGKAIEKMNGMLLNNLKVF 203
Query: 165 --EFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
F+ R + + +K K+ N++I N + L E F G
Sbjct: 204 VGRFKSRRERESELGVKAKD-----------YTNIYIKNFGENMDDQRLTEIFAKYG-PT 251
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
+S +V+ D+ RS G+GFVSF+S + A+ A+ GK G+ + V +++ QT+
Sbjct: 252 LSVKVMT-DDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTEL 310
Query: 283 GLHSDETSDDLNI 295
H ++ + +I
Sbjct: 311 KRHFEQIKQNQHI 323
>gi|317143798|ref|XP_003189536.1| pre-RNA splicing factor Srp2 [Aspergillus oryzae RIB40]
Length = 299
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T + + ++ L E +
Sbjct: 58 VVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTVYRMMVSGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
DL++F G DVV +E R G GFV F++ +TAI G+ F G
Sbjct: 117 DLKDFARGAGLDVVYSETG------REPGRGFVEFETANDLKTAIEKLDGRDFKG 165
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N P + +E ++ +F + G + + S+ +++G FV PD A A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 163 SYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
E EGR L A+ K+ + Q NL++ NL K L
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLE 313
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D RS G+GFV F + + A A++ G + +PL VA
Sbjct: 314 EAFSVHG-SITSAKVM-KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 15/186 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
K + +N+ + +++ F G +L ++ M +++G FV + A A+
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAI 158
Query: 159 NNLESYEFEGRTLKVN--YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
+ + R + V K ++K+ Q + NL+I N E + L+E F
Sbjct: 159 EKINNMIIRDRVVYVGKFIPKTERKS-----QARKVKFNNLYIKNFPPETDNEKLKEMF- 212
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
+E ++ SA + D+ +S G+GFV F AE A+ GK GR L A
Sbjct: 213 NEFGEIKSA-CVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC------A 265
Query: 277 RLQTKE 282
R Q KE
Sbjct: 266 RAQRKE 271
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ +L L+ F SE V+SA V R S GYG+V+F+ K AE A+
Sbjct: 15 LYVGDLHPRVSDSALQAKF-SEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 257 FQGKLFMGRPLRV 269
+ MGRP+R+
Sbjct: 74 LNYESLMGRPIRI 86
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ N+ + +T ED++A FE+ G V+D L + RG F+ M S +++ A+ +
Sbjct: 197 KIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGNARGFGFIQM-SDEDSLKAIEGM 255
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
EF+GRTL VN + K + P PK L++ NLS+ LRE F G
Sbjct: 256 NGVEFDGRTLNVNKSLPKGQRP-AAAAPKE---TKLYVGNLSWGTEEGALRELFGEYG-S 310
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+ + + G+ FV+ A A G GR LRV
Sbjct: 311 VIDCYIPTDRETGQHRGFAFVTMGPDD-ALRAADETDGYELDGRILRV 357
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAAL 158
+T+L N+ W + +R LF ++G+V+D + + ++RG AFVTMG PD+A A
Sbjct: 284 ETKLYVGNLSWGTEEGALRELFGEYGSVIDCYIPTDRETGQHRGFAFVTMG-PDDALRAA 342
Query: 159 NNLESYEFEGRTLKVNYAKIKKK 181
+ + YE +GR L+VN A+ K +
Sbjct: 343 DETDGYELDGRILRVNEAQPKGQ 365
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 122 EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA----K 177
++ G +D+ LS + + RG AFV M + D+ AA+ L E GRT+ V+ + +
Sbjct: 120 KRGGGSVDVPLSRET-GKCRGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVSESLPKDQ 178
Query: 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA--EVIFHDNPRR 235
+ +K + K +++ NL+F+ A+DL+ F G DV+ V + N R
Sbjct: 179 VAEKKKKFQGRKKRDEGAKIYVGNLNFDTTAEDLKAAFEEFG-DVMDCFLPVDYDGNAR- 236
Query: 236 SAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
G+GF+ S + + AI G F GR L V S
Sbjct: 237 --GFGFIQM-SDEDSLKAIEGMNGVEFDGRTLNVNKS 270
>gi|432920249|ref|XP_004079910.1| PREDICTED: uncharacterized protein LOC101158309 [Oryzias latipes]
Length = 564
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 32/178 (17%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ +T E++ A+FE +G V+ + R AFV + A A+ L
Sbjct: 8 KLFVGNLALDTTQEELSAIFEPYGQVVSCSVL-------RQFAFVHLQGEGAAERAIREL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
EF GR L V ++ + P + +F+ NLS +DL++ F + G
Sbjct: 61 NGREFRGRNLVVEESRGR-----------PLHSTKVFVGNLSGMCTTEDLQQLFQTFG-- 107
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL-----RVAPSRQ 274
+V+ D + GY FV ++K+ A AI A G F GRPL +V PS+Q
Sbjct: 108 ----KVLECD---KVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQ 158
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E R T++ N+ T ED++ LF+ G VL+ ++ +G AFV M
Sbjct: 71 VVEESRGRPLHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLEC-------DKVKGYAFVHM 123
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+ ++A A+ L F+GR L V +K++
Sbjct: 124 ENKEDALQAIEALHGTSFKGRPLSVELSKVQ 154
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N P + +E ++ +F + G + + S+ +++G FV PD A A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 163 SYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
E EGR L A+ K+ + Q NL++ NL K L
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLE 313
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D RS G+GFV F + + A A++ G + +PL VA
Sbjct: 314 EAFSVHG-SITSAKVM-KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 15/186 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
K + +N+ + +++ F G +L ++ M +++G FV + A A+
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAI 158
Query: 159 NNLESYEFEGRTLKVN--YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
+ + R + V K ++K+ Q + NL+I N E + L+E F
Sbjct: 159 EKINNMIIRDRVVYVGKFIPKTERKS-----QARKVKFNNLYIKNFPPETDNEKLKEMF- 212
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
+E ++ SA + D+ +S G+GFV F AE A+ GK GR L A
Sbjct: 213 NEFGEIKSA-CVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC------A 265
Query: 277 RLQTKE 282
R Q KE
Sbjct: 266 RAQRKE 271
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ +L L+ F SE V+SA V R S GYG+V+F+ K AE A+
Sbjct: 15 LYVGDLHPRVSDSALQAKF-SEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 257 FQGKLFMGRPLRV 269
+ MGRP+R+
Sbjct: 74 LNYESLMGRPIRI 86
>gi|226499830|ref|NP_001140942.1| uncharacterized protein LOC100273020 [Zea mays]
gi|194701856|gb|ACF85012.1| unknown [Zea mays]
Length = 473
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 13/179 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ W E +R FE G + + ++ R+RG +V A AA
Sbjct: 227 LFVGNLSWNVDEEWLRREFESFGELSGVRIMTERETGRSRGFGYVEYADASSAKAAYEAK 286
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPP-----VQPKPFA------TFNLFIANLSFEARAKD 210
+ E +GRT+ ++YAK + N P + + F + LF+ NL F
Sbjct: 287 KDTELDGRTINLDYAKPRDANSQAPREKAQTRARSFGDQTSPESNTLFVGNLVFGVDENA 346
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+RE F +G + + R GYG+V F S A A++ QG GR +R+
Sbjct: 347 VREVFEGQG-QIQGVRLPTDAETGRPKGYGYVEFSSVDEARQALNELQGTDIGGRAIRL 404
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 117 IRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+R +FE G + + L ++ R +G +V S DEA ALN L+ + GR +++++
Sbjct: 347 VREVFEGQGQIQGVRLPTDAETGRPKGYGYVEFSSVDEARQALNELQGTDIGGRAIRLDF 406
Query: 176 A 176
+
Sbjct: 407 S 407
>gi|410928273|ref|XP_003977525.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Takifugu rubripes]
Length = 368
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-----------MHSKNRNRGL 143
E+E ++T L+ +P + + E++R+LF G V +L +H ++ + G
Sbjct: 49 EDEDARTNLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGNTQTLVHHRSHSLGY 108
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
FV +P +A A+N L + +TLKV+YA+ P + A NL+I+ L
Sbjct: 109 GFVNFVNPSDAVRAINTLNGLRLQSKTLKVSYAR-------PSSEMIKDA--NLYISGLP 159
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
A +DL + F G ++++ V+ S G F+ F + AE AI G
Sbjct: 160 RTASQQDLEDMFSHYG-RIINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKHLNG 214
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + + +++G FV +P++A A+ + YE G K+
Sbjct: 213 EALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLY 272
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL L++ F + G +
Sbjct: 273 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-KIT 331
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ DN RS G+GFV F+ A A++ GK+ +PL VA
Sbjct: 332 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 377
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P +A AL+ + G+ +++ +++
Sbjct: 38 FSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDMMYGKPIRIMWSQ-- 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V +D S GY
Sbjct: 96 -RDP----SMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCKVA-NDEESNSKGY 148
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++++ A+ AI G L G+ + V
Sbjct: 149 GFVHFETEESAQKAIEKVNGMLLEGKKVYVG 179
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T + ++ FE +G + ++ R++G FV PD
Sbjct: 296 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 355
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 356 EATKAVTEMNGKMMCTKPLYVALAQRKE 383
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 32/178 (17%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ N+ +T E++ A+FE +G V+ + R AFV + A A+ L
Sbjct: 8 KIFVGNLALDTTQEELSAIFEPYGQVVSCSVL-------RQFAFVHLQGEGAAERAIREL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
EF GR L V ++ + P + +F+ NLS +DL++ F + G
Sbjct: 61 NGREFRGRNLVVEESRGR-----------PLHSTKVFVGNLSGMCTTEDLQQLFQTFG-- 107
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL-----RVAPSRQ 274
+V+ D + GY FV ++K+ A AI A G F GRPL +V PS+Q
Sbjct: 108 ----KVLECD---KVKGYAFVHMETKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQ 158
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E R T++ N+ T ED++ LF+ G VL+ + + +G AFV M
Sbjct: 71 VVEESRGRPLHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECD-------KVKGYAFVHM 123
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+ ++A A+ L F+GR L V +K++
Sbjct: 124 ETKEDALQAIEALHGTSFKGRPLSVELSKVQ 154
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T E+ LF+Q+G V L + RN G FV + +EA A++
Sbjct: 223 TNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDA 282
Query: 161 LESYEFEGRTLKVNYAKIK-------KKNPFPPVQPK--PFATFNLFIANLSFEARAKDL 211
L +F GR L V A+ K +K Q + + NL+I NL + + L
Sbjct: 283 LHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKL 342
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R F E + +++ + D +S G+GFV + + A A++ K+ +PL V+
Sbjct: 343 RAEF--EPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPLYVS 399
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 6/164 (3%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G VL +++ ++G FV + + A A+ ++ + +
Sbjct: 142 DNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVY 201
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V I +K + NL++ N+ E ++ F G V + ++ D+
Sbjct: 202 VG-PHISRKERQSKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQ--VQSSLLKRDD 258
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
R+ G+GFV+F++ + A+ A+ A F GR L VA +++ A
Sbjct: 259 QGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYVARAQKKA 302
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R +Y L +N+ E +RA FE GT+ + + +++G FV +P
Sbjct: 317 QERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAP 376
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
DEAT A+ + + + L V+ A+ K+
Sbjct: 377 DEATKAVAEMNNKMIGSKPLYVSLAQRKE 405
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 92/191 (48%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R+ + KT+ + +N+ ++T ED+ +F ++G++ + + ++R F+
Sbjct: 213 QERDHSFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINF 272
Query: 149 GSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPPV---QPKPFATFNLFI 199
+PD A+ A+ L + + GR K + +++ K F + NL++
Sbjct: 273 ENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYL 332
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL LRE F + G +++ + D S G GFV+F +++ A A++ G
Sbjct: 333 KNLDDSIGDDQLRELFSNFGK--ITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNG 390
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 391 KMISGKPLYVA 401
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 13/183 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALN 159
T L ++ + + + LF Q G V+ + + + R+ G A+V +P +A AL
Sbjct: 46 TSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALE 105
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L + ++V Y+ ++P + + N+FI NL K L E F S G
Sbjct: 106 VLNFAVLNNKPIRVMYSN---RDP----SSRRSGSANIFIKNLDKTIDNKTLHETFSSFG 158
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
++S +V D +S G+GFV ++ ++ A+ AI + G L +P+ V P F R Q
Sbjct: 159 T-ILSCKVAM-DEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGP---FLRKQ 213
Query: 280 TKE 282
++
Sbjct: 214 ERD 216
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 223 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 282
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 283 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 341
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 342 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 383
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 128 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 186
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E +L+E F S+ +S +V+ D
Sbjct: 187 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVM-RD 242
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ +S G+GFVS++ + A A+ GK G+ + V
Sbjct: 243 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 281
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 302 QERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 360
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 361 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 390
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N P + +E ++ +F + G + + S+ +++G FV PD A A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMH 253
Query: 163 SYEFEGRTLKVNYAKIKK----------KNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
E EGR L A+ K+ + Q NL++ NL K L
Sbjct: 254 GKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLE 313
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D RS G+GFV F + + A A++ G + +PL VA
Sbjct: 314 EAFSVHG-SITSAKVM-KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 15/186 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
K + +N+ + +++ F G +L ++ M +++G FV + A A+
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAI 158
Query: 159 NNLESYEFEGRTLKVN--YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
+ + R + V K ++K+ Q + NL+I N E + L+E F
Sbjct: 159 EKINNMIIRDRVVYVGKFIPKTERKS-----QARKVKFNNLYIKNFPPETDNEKLKEMF- 212
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
+E ++ SA + D+ +S G+GFV F AE A+ GK GR L A
Sbjct: 213 NEFGEIKSA-CVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC------A 265
Query: 277 RLQTKE 282
R Q KE
Sbjct: 266 RAQRKE 271
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ +L L+ F SE V+SA V R S GYG+V+F+ K AE A+
Sbjct: 15 LYVGDLHPRVSDSALQAKF-SEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 257 FQGKLFMGRPLRV 269
+ MGRP+R+
Sbjct: 74 LNYESLMGRPIRI 86
>gi|238487096|ref|XP_002374786.1| pre-RNA splicing factor Srp2, putative [Aspergillus flavus
NRRL3357]
gi|317143800|ref|XP_001819713.2| pre-RNA splicing factor Srp2 [Aspergillus oryzae RIB40]
gi|220699665|gb|EED56004.1| pre-RNA splicing factor Srp2, putative [Aspergillus flavus
NRRL3357]
Length = 300
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T + + ++ L E +
Sbjct: 58 VVPAFHGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTVYRMMVSGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
DL++F G DVV +E R G GFV F++ +TAI G+ F G
Sbjct: 117 DLKDFARGAGLDVVYSETG------REPGRGFVEFETANDLKTAIEKLDGRDFKG 165
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 206 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 265
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR+ F G + SA+
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSAK 324
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 325 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E +L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ +S G+GFVS++ + A A+ GK G+ + V
Sbjct: 226 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 264
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ ++T ED+ +F ++GT+ + + ++R FV SPD+A A+ L +
Sbjct: 306 KNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKK 365
Query: 166 ------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFI 216
+ GR K + ++ K F + NL++ NL LRE F
Sbjct: 366 INDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFS 425
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ G +++ I D S G GFVSF +++ A A++ GK+ G+PL VA
Sbjct: 426 NFGK--ITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVA 477
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 18/197 (9%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALN 159
T L ++ T + LF Q G V+ + + + R+ G A+V +P +A A+
Sbjct: 122 TSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAME 181
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L + ++V Y+ ++P + + N+FI NL K L + F + G
Sbjct: 182 ALNFAPLNNKPIRVMYSN---RDP----SSRRSGSANIFIKNLDKTIDNKTLHDTFSAFG 234
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
++S +V D+ +S G+GFV ++ ++ A++A+ + G L +P+ V P F R Q
Sbjct: 235 A-ILSCKVAM-DDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGP---FLRKQ 289
Query: 280 TKEGLHSDETSDDLNIN 296
+ D +SD N
Sbjct: 290 ER-----DNSSDKAKFN 301
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+P T +L++ +L L E F S+ VVS V N RRS GY +V++ +
Sbjct: 117 QPLPTTSLYVGDLEANVTDSQLYELF-SQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMD 175
Query: 250 AETAISAFQGKLFMGRPLRV 269
A A+ A +P+RV
Sbjct: 176 AARAMEALNFAPLNNKPIRV 195
>gi|170044495|ref|XP_001849881.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867621|gb|EDS31004.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 393
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM--------HSKNRNRGLAFVTMGS 150
++T L+ +P T T E+IR+LF G V ++L K ++ G FV
Sbjct: 68 ARTNLIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYGFVNFHR 127
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
+A A+N L + + LKV++A+ + NL+I+ L ++
Sbjct: 128 SQDAEQAVNVLNGLRLQNKVLKVSFARPSSEG---------IKGANLYISGLPKTITQEE 178
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
L F G +++++ V+ D + G GF+ F +K AE AI+A G
Sbjct: 179 LEIIFRPYG-EIITSRVLVQDGNDKPKGVGFIRFDQRKEAERAIAALNG 226
>gi|123485368|ref|XP_001324476.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121907359|gb|EAY12253.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 576
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 33/217 (15%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS-MHSKNRNRGLAFVTMGSPDEATA 156
YSKT L+ +N+ W +T E++R +F GT++ L+ HS +A V D+A
Sbjct: 375 YSKTVLIIKNLRWETTEEELRGIFASKGTLVRFVLAPTHS------VAIVEFARGDDARK 428
Query: 157 ALNNLE-----------SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE 205
A N+L + +G T ++K+ P V+ K T L + NL F
Sbjct: 429 AFNSLNYRLLHDTPIYIQWAPDGCTTGTGVETDERKSCRPKVEIK---TTTLIVKNLPFT 485
Query: 206 ARAK-DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
K ++ E F G ++ + + N + G+ F+ F +++ A+ A A Q G
Sbjct: 486 VTKKSEIAEAFKHVG-NIKAIRMTKKRNEQGHRGFCFIDFTTRQAAQAAFDAMQDVHLAG 544
Query: 265 RPLRVAPSRQFARLQTKEGLHSDETSDDLNINAEEAD 301
R L V P+ + R ETS ++N+N E D
Sbjct: 545 RHLIVQPAEEGKR----------ETSVEMNVNPIEED 571
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALN 159
TRL +N+P+ ST E+I+A FE+ G V D+ L + NRG AFV + AT A
Sbjct: 192 TRLYVKNIPYKSTAEEIKARFEEFGPVEDVSLPTSEVPGENRGFAFVKFADLESATKAY- 250
Query: 160 NLESYEFEGRTLKV 173
+ S FEGR L++
Sbjct: 251 -MTSVIFEGRHLQL 263
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 13/213 (6%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTM 148
N++Q +E +L N+ + + + LF G V + +++ H+ ++G FV
Sbjct: 293 NSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQY 352
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP-------KPFATFNLFIAN 201
SP A A+ +L +GR ++V + I P V+ K NL++ N
Sbjct: 353 SSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCN 412
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
+ K L E F+ G + A V+ + + GYGF+ F + A AI+A G L
Sbjct: 413 MPSSIDTKKLVELFLPFG-KITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGAL 471
Query: 262 FMGRPLRVAPSRQFARLQTKEGLHSDETSDDLN 294
G + V + A L + + +T+ D+N
Sbjct: 472 VGGEMIIV----RVAGLSPSASISAVQTTQDIN 500
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 6/177 (3%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEA 154
+E T L N+P + + LF G ++ + ++G FV P A
Sbjct: 204 KEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCA 263
Query: 155 TAALNNLESYEFEGRTLKVNYAKI--KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ A+ + EGR L+V A + N P + A L++ NLS L
Sbjct: 264 SEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMA--KLYVCNLSLSMNTDRLI 321
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F+ G +V +A+V S GYGFV + S A A+ G+L GR + V
Sbjct: 322 HLFLPFG-EVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEV 377
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 179 KKKNPFPPVQP------KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
KK+ PP P K NL++ NL + L E F+ G +V + V+
Sbjct: 187 KKQEHTPPSFPQDGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFG-QIVRSRVVDDCF 245
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
S GYGFV + + A AI G+L GR L V
Sbjct: 246 TGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEV 282
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 20/190 (10%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
S +A+++ Q ++ +K+RL N+P + T + + LF G + + +++
Sbjct: 485 SPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------Y 537
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNP----FPPVQPKPFATFNLFI 199
+ V A A+ +++ Y EG+ L V +++ N P++ A NL++
Sbjct: 538 SLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMA--NLYV 595
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ + F G VV A + R YG V F + A AI G
Sbjct: 596 GRVPSSLTEDQFIDLFRPFGR-VVQARMF------RFQRYGMVRFDNPSCAAAAIDHLDG 648
Query: 260 KLFMGRPLRV 269
G L V
Sbjct: 649 YQIGGSILAV 658
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 135 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 194
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 195 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 253
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 254 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 295
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 40 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 98
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E +L+E F S+ +S +V+ D
Sbjct: 99 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVM-RD 154
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ +S G+GFVS++ + A A+ GK G+ + V
Sbjct: 155 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 193
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEINGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + + NV + ED +R +FE++G + ++ +RG FV
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFV 228
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A L E EG+ L V A+ K K F ++ + + N
Sbjct: 229 AFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 288
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 289 LYVKNLDDTIDDERLRKEFAPFG-TITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 345
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 346 MNGRIVGTKPLYVA 359
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTMNFDMIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 122 A-QDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 163
>gi|344234704|gb|EGV66572.1| hypothetical protein CANTEDRAFT_117619 [Candida tenuis ATCC 10573]
Length = 472
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + N+P++ + ++ L + G V ++ + K ++ G V +P+EA ALN
Sbjct: 244 TEIFVGNLPYSMNWQALKDLMREAGEVERADVRLDQKGKSMGYGTVVFKTPEEAKLALNT 303
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKP----------FATFNLFIANLSFEARAKD 210
YE EGR L + + P V + +++ NL + D
Sbjct: 304 FADYEIEGRKLSTRPGRTHESTIQPKVDKNTKFTKDIIADGLKSDTIYVENLPYVTTVDD 363
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L E F + G V AE+ + + R++G V F+S ++AE +I+ + GR L+++
Sbjct: 364 LYELFETIG-KVTRAEIQYAPHG-RASGNAVVRFESDELAELSIANLNSYNYGGRDLKIS 421
Query: 271 ----PSRQFARLQTKEGLHSDETSDDLNINAEEAD 301
P + +++TKE +ET + ++ EE D
Sbjct: 422 YANKPGSAY-KMETKE----NETEE---VDMEEGD 448
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 87 AAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
AA+ + + E + N+P+ + +DI +F+ V ++ + ++ R+RG+A V
Sbjct: 112 AAIEYKSKTERNYDNSIFIGNIPYDAGPKDIEDMFKGQYKVRRADI-VTNRGRSRGMATV 170
Query: 147 TMGSPDEATAALNNLESYEFEGRTL--KVNYAKIKKK------------NPFPPVQPK-- 190
S DE +A+ + YE+ GR + + +Y ++K N PP + +
Sbjct: 171 EFSSKDEVKSAIEKFDHYEYRGRQIFVRQDYPPPEEKRVSMEQPGEKFSNRTPPSRERYT 230
Query: 191 ---------PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
P +F+ NL + + L++ + E +V A+V D +S GYG
Sbjct: 231 SSVKQSPLVPEPGTEIFVGNLPYSMNWQALKD-LMREAGEVERADVRL-DQKGKSMGYGT 288
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
V FK+ + A+ A++ F GR L P R
Sbjct: 289 VVFKTPEEAKLALNTFADYEIEGRKLSTRPGR 320
>gi|422295750|gb|EKU23049.1| hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526]
Length = 227
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
SKT V N+ W +T + + A+ E G VL +E+ HS R++G A VT + ++A+ A
Sbjct: 2 SKTVFVG-NLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRA 60
Query: 158 LNNLESYEFEGRTLKV--NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+ L E EGR L V + +I+K+ F +F+ NL ++ A LR F
Sbjct: 61 MELLCGREVEGRPLYVREDRTEIEKEEGFV-----------VFVGNLPWDMTASGLRTVF 109
Query: 216 IS-EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
+DV I + RS G+G + F+S + A+ AI G R + V R
Sbjct: 110 SEFSPYDV----HIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 164
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+F+ NLS+ A L + G V+ EV H + RS G+ V+F++ + A A+
Sbjct: 4 TVFVGNLSWGTTADSLTAIMETAG-RVLGVEVQAHSDTGRSKGWALVTFETAEDASRAME 62
Query: 256 AFQGKLFMGRPLRVAPSRQFARLQTKEG 283
G+ GRPL V R ++ +EG
Sbjct: 63 LLCGREVEGRPLYVREDR--TEIEKEEG 88
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|302892801|ref|XP_003045282.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
gi|256726207|gb|EEU39569.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
Length = 718
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 29/217 (13%)
Query: 71 HFSATTQDP--FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVL 128
H A DP F D + A +T++ E ++ L +++P ++T+E + F QH V
Sbjct: 12 HAEADDLDPASFEDRDNGAVQSTKRARVEERRS-LFVRSLPPSATNETLTDFFSQHYPVK 70
Query: 129 DIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF--- 184
+ + K + +RG FVT D+AT A L + E++GR L++ A+ + +N
Sbjct: 71 HATVVVDQKTKESRGYGFVTFADADDATEAKKALHNQEWDGRRLRIEIAEPRHRNSATGE 130
Query: 185 --------PPVQPKPFATFNLFIANLSFEAR-AKDLREFFISEGWDVVSAEVIFHDNPRR 235
+Q P L I NL + + ++ L F S G ++ F D P+
Sbjct: 131 VSANKARKEELQKPP----KLIIRNLPWSIKTSEQLSNLFRSFG------KIKFADLPQS 180
Query: 236 SA---GYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G+GF++ + KK AE A+ A GK GR L V
Sbjct: 181 QGKLKGFGFITIRGKKNAEKALEAINGKEIDGRTLAV 217
>gi|451849890|gb|EMD63193.1| hypothetical protein COCSADRAFT_38066 [Cochliobolus sativus ND90Pr]
Length = 326
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ + T + ++ +F + G + I++ ++ +RG A+V + +A AA++NL+
Sbjct: 138 LYIGNLYYEVTPDQLKRVFSRFGDIESIKIVYDNRGLSRGFAYVEYKNVSDAQAAIDNLD 197
Query: 163 SYEFEGRTLKVNY-------AKIKKKN---PFPPVQPKPFATFNLFIANLSFEARAKDLR 212
FEGR L V + AK + N P PP + LFI N+SFE KDL
Sbjct: 198 MQVFEGRNLVVQFHAPKYQPAKGRGPNGNEPNPPSK-------TLFIGNMSFEMSDKDLN 250
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ F + +V+ V + G+ F A A + K+ GR LRV
Sbjct: 251 DLF-RDIRNVLDVRVAIDRRTGQPRGFAHADFIDVASATRAREVLKEKVIYGRQLRV 306
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
++ LF+++G L +++ ++RG FV+ ++A A+ + E G+T+ V A
Sbjct: 208 LKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA 267
Query: 177 KIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
+ K K F ++ + + + NL+I NL + LR+ F G + SA+V
Sbjct: 268 QKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSAKV 326
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ + RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 327 MLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 367
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + D A A+ + R + V K +K
Sbjct: 120 FSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 178
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E F G +S +V+ D +S G+
Sbjct: 179 EREAEMGAKAKEFT--NVYIKNFGDDMDDQRLKELFDKYG-KTLSVKVM-TDPTGKSRGF 234
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ G G+ + V
Sbjct: 235 GFVSYEKHEDANKAVEEMNGTELNGKTVFVG 265
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M + R++G FV SP
Sbjct: 286 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEEGRSKGFGFVCFSSP 344
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 345 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 374
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E T + +++P T ED+ LF +G V+ ++ + K + G FV +P+E+ A
Sbjct: 90 EKDSTNIFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNESQA 149
Query: 157 ALNNLESYEFEGRTLKVN----YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
A+ L+ ++F+ + L Y + KNP + NLFI L + + LR
Sbjct: 150 AIKELDGFQFQNKKLLCRLSNLYTNLNSKNP----------SNNLFIKPLPADVTDEQLR 199
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ F G +V +V+ N +S GFV F + A +AI A G
Sbjct: 200 KLFEPYG-KIVECKVMLDQN-GQSKFAGFVRFFNDSEAASAIDAMNG 244
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+F+ +L + +DL + F + G +V+S++V+ D S GYGFV F + ++ AI
Sbjct: 95 NIFVKHLPNDFTDEDLAKLFSAYG-NVISSKVMI-DPKGNSYGYGFVRFSNPNESQAAIK 152
Query: 256 AFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDDLNINAEEADTAD 304
G F + L S + L +K S++L I AD D
Sbjct: 153 ELDGFQFQNKKLLCRLSNLYTNLNSK------NPSNNLFIKPLPADVTD 195
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEINGKIIFVGR 265
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|112983834|ref|NP_001037293.1| RNA-binding protein lark [Bombyx mori]
gi|57236850|gb|AAW48898.1| lark-PA [Bombyx mori]
Length = 343
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ N+ +T D+R LFE++GTV++ ++ R FV M + A+ NL
Sbjct: 8 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ +K+ AK +K P P T +F+ NL+ + RA ++RE F G
Sbjct: 61 NGELVHGQAIKIEAAKSRKA----PSTP----TTKIFVGNLTDKTRAPEVRELFQKFGT- 111
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ + YGFV + AI G + G+P++V S +R++ +
Sbjct: 112 VVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS--TSRVRQR 161
Query: 282 EGLHSDE 288
G+ E
Sbjct: 162 PGMGDPE 168
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
TF +FI NLS + DLR F G VV +++ + YGFV ++++V
Sbjct: 5 GTFKIFIGNLSDKTTEADLRPLFEKYGT-VVECDIVRN--------YGFVHMENEQVGRE 55
Query: 253 AISAFQGKLFMGRPLRV 269
AI G+L G+ +++
Sbjct: 56 AIQNLNGELVHGQAIKI 72
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W + ++ FE+ G V+ ++ R++G +V SP++A A+ +
Sbjct: 403 LFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAM 462
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-------TFNLFIANLSFEARAKDLREF 214
E +GRT+ V+++ K + PP + + F T LFI NL F A + E
Sbjct: 463 AGTEIDGRTINVDFSAPKPER--PPQEKRSFGQEELSAPTTTLFIGNLPFSATQDSVYEA 520
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F SE D+ S + R G+G+V F +++ A A++ +G
Sbjct: 521 F-SEYGDINSVRLPTDPETERIKGFGYVEFATQEAATAAVNVGRG 564
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NLF+ LS+ L++ F G +V+SA VI RS G+G+V F S + A A+
Sbjct: 402 NLFVGGLSWNVDDDWLKKEFEKFG-EVISARVITERGTERSKGFGYVDFASPEDARKAVE 460
Query: 256 AFQGKLFMGRPLRV 269
A G GR + V
Sbjct: 461 AMAGTEIDGRTINV 474
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + + +++G FV +P++A A+ + YE G K+
Sbjct: 213 EALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLY 272
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL L++ F + G +
Sbjct: 273 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-KIT 331
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ DN RS G+GFV F+ A A++ GK+ +PL VA
Sbjct: 332 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 377
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P +A AL+ + G+ +++ +++
Sbjct: 38 FSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDMMYGKPIRIMWSQ-- 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V +D S GY
Sbjct: 96 -RDP----SMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCKVA-NDEESNSKGY 148
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++++ A+ AI G L G+ + V
Sbjct: 149 GFVHFETEESAQKAIEKVNGMLLEGKKVYVG 179
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T + ++ FE +G + ++ R++G FV PD
Sbjct: 296 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 355
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 356 EATKAVTEMNGKMMCTKPLYVALAQRKE 383
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|429892782|gb|AGA18936.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 1 EEDERGKLFVDGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 60
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 61 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 114
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 115 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 150
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEINGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 18/197 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
++ ++RE+E + T + +N T + ++ +FE++GT+ ++ ++RG
Sbjct: 175 ISRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGF 234
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF- 195
FV P+ A A+ +L E EG+ + V A+ K K F ++ + +
Sbjct: 235 GFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQ 294
Query: 196 --NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR+ F G + S +V+ D RS G+GFV F + A A
Sbjct: 295 GVNLYVKNLDDTIDDERLRKEFAPFG-TITSVKVMMEDG--RSKGFGFVCFSLAEEATKA 351
Query: 254 ISAFQGKLFMGRPLRVA 270
++ G++ +PL VA
Sbjct: 352 VTEMNGRIVGSKPLYVA 368
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + + R+ G A+V P +A AL+ + +
Sbjct: 19 HSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDTMNFDIIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCRV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVG 172
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHSDITEAMLFEKFSSAG-PVLSIRVCRDAVTRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDIIKGRPIRI 84
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAAL 158
KT V Q + W ++ +++ FEQ+GTVLD + R+RG +V + EA A
Sbjct: 394 KTLWVGQ-LSWNVDNDWLKSEFEQYGTVLDARVQCDRDSGRSRGFGYVDFATSAEALRAS 452
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIANLSFEARAKDLR 212
E +GR L+V+ + + K F + LFI L++ D+
Sbjct: 453 KEAHGKELDGRALRVDLQPARGPQDRAESRAKHFKDERSAPSNTLFIGGLAWALTEDDIW 512
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G +V + + R G+G+V F S+ A A+ G+ GRP+R+
Sbjct: 513 NAFAEFG-EVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETMNGQALGGRPIRI 568
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEINGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSM--HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
E +R +FE++G ++ ++ HS RN+G FV P +A A ++L + GR L
Sbjct: 205 EGLREMFERYGKIVSHKVMQDDHS-GRNKGFGFVCFEDPIDAENACDDLNMKDINGRILY 263
Query: 173 VNYA--KIKK----KNPFPPVQPKP---FATFNLFIANLSFEARAKDLREFFISEGWDVV 223
V A KI++ +N F ++ + + NL++ NL + LR+ F+ G +
Sbjct: 264 VGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGT-IT 322
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 323 SAKVMSEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 367
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G +L I + R+ G A+V P +A AL+++ +
Sbjct: 19 HNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ ++ +++P + N+FI NL K + + F + G D++S +V
Sbjct: 79 GRPIRIMWS---QRDP----SLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG-DILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ +N S GYGFV F +++ A +I G L G+ + V
Sbjct: 131 VCDENG--SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVG 171
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN-YAKIK 179
F G +L ++ + +N ++G FV + + A ++ + G+ + V + K
Sbjct: 119 FSAFGDILSCKV-VCDENGSKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRK 177
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++ Q K F N+F+ N E + LRE F G +VS +V+ D+ R+ G+
Sbjct: 178 ERYDAMGGQQKKFT--NVFVKNFGDELDDEGLREMFERYG-KIVSHKVMQDDHSGRNKGF 234
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F+ AE A K GR L V
Sbjct: 235 GFVCFEDPIDAENACDDLNMKDINGRILYVG 265
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G ++S V RRS GY +
Sbjct: 2 NPSGPSYP----MASLYVGDLHNDVTEAMLFEKFSSAG-PILSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + + GRP+R+
Sbjct: 57 VNFQQPADAERALDSMNFDVIKGRPIRI 84
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ + E +R F GT+ ++ M R++G FV SP+
Sbjct: 287 ERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKV-MSEGGRSKGFGFVCFSSPE 345
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 346 EATKAVTEMNGRIVSTKPLYVALAQRKE 373
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 93/190 (48%), Gaps = 14/190 (7%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
++ R+++++ + +N P + E ++ +F + G + + S+ +++G FV +
Sbjct: 173 SQNRKQKFNN--IYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLN 230
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA----------KIKKKNPFPPVQPKPFATFNLFIA 200
P+ A AA+ + E GR+L + A K++ + + K + NL++
Sbjct: 231 PEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVK 290
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL E + L+E F G +S+ + D+ RS G+GFV F + + A A++ G+
Sbjct: 291 NLDDEIDDERLKEIFSKYG--PISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGR 348
Query: 261 LFMGRPLRVA 270
+ +PL VA
Sbjct: 349 VEYSKPLYVA 358
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ +L + LR F SE V A V R+S GYG+V+F+ K AE A+
Sbjct: 4 LYVGDLHPDINDDQLRMKF-SEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQ 62
Query: 257 FQGKLFMGRPLRVAPSRQFARLQTKEGL 284
++ MGRP+R+ S++ L+ K GL
Sbjct: 63 MNYEVVMGRPIRIMWSQRDPSLR-KSGL 89
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G +V P +A AL + GR +++ +++ ++P + N+FI N
Sbjct: 44 GYGYVNFEDPKDAERALEQMNYEVVMGRPIRIMWSQ---RDP----SLRKSGLGNIFIKN 96
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L+ K+L + F G ++S ++ +N S GYGFV F++++ A+ AI
Sbjct: 97 LAKTIEQKELYDTFSLFGR-ILSCKIAMDENGN-SKGYGFVHFENEECAKRAIQKVNNMS 154
Query: 262 FMGRPLRVA 270
G+ + V
Sbjct: 155 ICGKVVYVG 163
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|126273923|ref|XP_001387749.1| nuclear localization sequence binding protein [Scheffersomyces
stipitis CBS 6054]
gi|126213619|gb|EAZ63726.1| nuclear localization sequence binding protein, partial
[Scheffersomyces stipitis CBS 6054]
Length = 245
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W E +R FE G V+ + M + ++RG +V S A ALN
Sbjct: 5 LFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKALNEY 64
Query: 162 ESYEFEGRTLKVNYAKIK------KKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREF 214
+ E +GR + ++ + K +N P A + LFI NLSF A +L
Sbjct: 65 QGRELDGRPINLDMSTGKPHVTKSTENRAKQYGDTPSAPSDTLFIGNLSFNADRDNLFNI 124
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G V+S + H + ++ G+G+V F S A+ A+ A G+ GR R+
Sbjct: 125 FGVHG-TVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEALNGEYIEGRACRL 178
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 90 NTEQREEEYSKT------RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RG 142
+TE R ++Y T L N+ + + +++ +F HGTV+ + H + +G
Sbjct: 88 STENRAKQYGDTPSAPSDTLFIGNLSFNADRDNLFNIFGVHGTVISCRIPTHPDTQQPKG 147
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+V S DEA AA+ L EGR +++++ K
Sbjct: 148 FGYVQFSSVDEAKAAMEALNGEYIEGRACRLDFSTPK 184
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 206 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 265
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 324
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 325 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E +L+E F S+ +S +V+ D+ +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVM-RDSSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 264
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T L +N+P + + + FEQ G V+ + + + ++ F++ D+A AA+
Sbjct: 182 TNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 160 NLESYEFEGRTL---------------KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
+ E EG+ L K Y KIK++ + + + NL++ NL
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQE------RIQRYQGVNLYVKNLDD 295
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+ LRE F G ++ SA+VI N R S G+GFV F S + A A++ G++F G
Sbjct: 296 SIDDEGLREAFKQFG-NITSAKVITDLNGR-SKGFGFVCFSSPEEATKAVTEMNGRIFGG 353
Query: 265 RPLRVA 270
+PL V
Sbjct: 354 KPLYVG 359
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R + Y L +N+ + E +R F+Q G + ++ R++G FV SP
Sbjct: 277 QERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSP 336
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EAT A+ + F G+ L V A+ K+
Sbjct: 337 EEATKAVTEMNGRIFGGKPLYVGLAQRKE 365
>gi|170061963|ref|XP_001866463.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880034|gb|EDS43417.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 341
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKNRNRGLAFVTMGSPDE 153
+E SKT L+ +P T T E++++LF G V +L + ++ G FV P++
Sbjct: 22 QEDSKTNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTAGQSLGYGFVNYHRPED 81
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A+N + +T+KV++A+ NL+++ LS +DL
Sbjct: 82 AEKAINTFNGLRLQNKTIKVSFARPSS---------DAIKGANLYVSGLSKSMTQQDLEA 132
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F G ++++ ++ + S G GF+ F + AE AI G
Sbjct: 133 LFQPYG-QIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNG 177
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 223 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 282
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 283 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 341
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 342 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 383
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 136 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 194
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E +L+E F S+ +S +V+ D+ +S G+
Sbjct: 195 EREAELGAKAKEFT--NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVM-RDSSGKSKGF 250
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 251 GFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 281
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 16/180 (8%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N P + +E ++ +F + G + + ++ +++G FV PD A A+ +
Sbjct: 194 LYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMH 253
Query: 163 SYEFEGRTLKVNYA------------KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
E EGR L A KI+K+ Q NL++ NL K
Sbjct: 254 GKEIEGRVLYCARAQRKEERQEELKQKIEKQR--AERQSNYMLNVNLYVKNLDDNIDDKR 311
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L E F G + SA+V+ D RS G+GFV F + + A A++ G + +PL VA
Sbjct: 312 LEEAFSVHG-SITSAKVM-KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 15/186 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
K + +N+ + +++ F G +L ++ M +++G FV + A A+
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAI 158
Query: 159 NNLESYEFEGRTLKVN--YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
+ + R + V K ++K+ Q + NL++ N E + L+E F
Sbjct: 159 EKINNMIIRDRVVYVGKFIPKTERKS-----QARKVKFNNLYVKNFPPETDNEKLKEMF- 212
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
SE ++ SA + DN +S G+GFV + AE A+ GK GR L A
Sbjct: 213 SEFGEIKSA-CVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYC------A 265
Query: 277 RLQTKE 282
R Q KE
Sbjct: 266 RAQRKE 271
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ +L L+ F SE V+SA V R+S GYG+V+F+ K AE A+
Sbjct: 15 LYVGDLHPRVSDSALQAKF-SEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 257 FQGKLFMGRPLRV 269
+ MGRP+R+
Sbjct: 74 LNYEPLMGRPIRI 86
>gi|429892780|gb|AGA18935.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|119188517|ref|XP_001244865.1| hypothetical protein CIMG_04306 [Coccidioides immitis RS]
gi|392867773|gb|EAS33469.2| nucleic acid-binding protein [Coccidioides immitis RS]
Length = 334
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K+ + N+ + T D++ F + G V + L + ++G +V + A A+
Sbjct: 140 KSTIYVGNLFFDVTAGDLKNEFSKCGPVEGVRLLYDYRGVSKGFGYVKFHDVETAEKAVA 199
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ FEGR L VN+A+++ P KP T L+I N+ FE +DL E F +
Sbjct: 200 LMHGQLFEGRHLAVNFARVELDKPMNHDPTKP-PTRTLYIGNIPFEMTDRDLNELF-KDV 257
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
+++ V R+ G+ F + A A + K GRPLR+ S ++Q
Sbjct: 258 DNIIDVRVAVDRRTGRARGFVHADFTDIESARKAFTLLSTKTPYGRPLRIDYSHSNIKIQ 317
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 116 DIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+++ LF Q G L +++ S +++G FV+ ++A A+ + E G+ + V
Sbjct: 206 NLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGR 265
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + + NL+I NL + LR F G + SA+
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFG-SITSAK 324
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 325 VMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E +L+E F S+ +S +V+ D
Sbjct: 170 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDGNLKELF-SQFGKTLSVKVM-RD 225
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ +S G+GFVS++ + A A+ GK G+ + V
Sbjct: 226 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 264
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 18/206 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
+ RE S T+ + +N+ +T D++++F ++G + + +++G FV
Sbjct: 191 QDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNF 250
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT---------FNLFI 199
+ ++A A+ L F+G+ V A+ K + + +T NL+I
Sbjct: 251 ANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYI 310
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL ++LRE F SE + S +V+ D S G GFV+F + A A+ G
Sbjct: 311 KNLDDSVGDEELRELF-SEFGTITSCKVM-RDPSGISRGSGFVAFSIAEGASWALGEMNG 368
Query: 260 KLFMGRPLRVAPSR----QFARLQTK 281
K+ G+PL VA ++ + ARLQ +
Sbjct: 369 KMVAGKPLYVALAQRKEDRRARLQAQ 394
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ H+ + F G +L +++ + +++G FV S + A A++ L
Sbjct: 117 KNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGML 176
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----NLFIANLSFEARAK-DLREFFISEG 219
+ + V PF Q + A N+++ NL FEA + DL+ F G
Sbjct: 177 INDKQVYVG--------PFQRKQDRESALSGTKFNNVYVKNL-FEATTEADLKSIFGEYG 227
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
+++ V+ D +S G+GFV+F + + A A+ A GK F G+ V +++
Sbjct: 228 --AITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQK 280
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
+T++ ++Y T L +N+ + E++R LF + GT+ ++ +RG FV
Sbjct: 295 STKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFS 354
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
+ A+ AL + G+ L V A+ K+
Sbjct: 355 IAEGASWALGEMNGKMVAGKPLYVALAQRKE 385
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E+ T + +N T E ++ +F G L + + K R+RG FV
Sbjct: 177 KEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAK--------IKKK-NPFPPVQPKPFATFNL 197
++A A+N + E G+ L V A+ +K+K + + + + NL
Sbjct: 237 NYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ + +S G+GFV F S + A A++
Sbjct: 297 YVKNLDDSIDDERLRKEFAPYG-TITSAKVMTDGS--QSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 354 NGRIVATKPLYVA 366
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R+ G A+V P +A AL+ + +GR +++ ++ +++P + N+F
Sbjct: 50 RSLGYAYVNFQQPADAECALDTMNYDVIKGRPIRIMWS---QRDP----GLRKSGVGNIF 102
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I N+ K L + F + G +++S +V+ + + S GYGFV F++++ A AI
Sbjct: 103 IKNMDESIDNKALYDTFSAFG-NILSCKVVCDE--KGSKGYGFVHFETQEAANRAIETMN 159
Query: 259 GKLFMGRPLRVA 270
G L R + V
Sbjct: 160 GMLLNDRKVFVG 171
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ K ++G FV + + A A+ + R + V + K +K
Sbjct: 119 FSAFGNILSCKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRK 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + + L+E F + G +S V+ D RS G+G
Sbjct: 178 EREVE-FGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGR-TLSVRVM-KDEKGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV++ + A+ A++ GK G+ L V
Sbjct: 235 FVNYAHHEDAQKAVNEMNGKEINGKILYVG 264
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EE Y KT V N+ + T E + LF Q GTV ++ + N AF+ S A
Sbjct: 3 EESYPKTLYVG-NLDTSVTEELLCTLFSQMGTVKSCKIIREASNDP--YAFIEYASHTSA 59
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT--FNLFIANLSFEARAKDLR 212
AL + F + +KVN+A P QPK + +++F+ +LS E + LR
Sbjct: 60 QTALAAMNKRFFLKKEIKVNWATS------PGNQPKTDTSQHYHIFVGDLSPEIETETLR 113
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E F G ++ + ++ +S GY FVSF K AE AI G+ R +R
Sbjct: 114 EAFAPFG-EISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRT 169
>gi|303323779|ref|XP_003071881.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111583|gb|EER29736.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320031835|gb|EFW13793.1| nucleic acid-binding protein [Coccidioides posadasii str. Silveira]
Length = 334
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
K+ + N+ + T D++ F + G V + L + ++G +V + A A+
Sbjct: 140 KSTIYVGNLFFDVTAGDLKNEFSKCGPVEGVRLLYDYRGVSKGFGYVKFHDVETAEKAVA 199
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ FEGR L VN+A+++ P KP T L+I N+ FE +DL E F +
Sbjct: 200 LMHGQLFEGRHLAVNFARVELDKPMNHDPTKP-PTRTLYIGNIPFEMTDRDLNELF-KDV 257
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279
+++ V R+ G+ F + A A + K GRPLR+ S ++Q
Sbjct: 258 DNIIDVRVAVDRRTGRARGFVHADFTDIESARKAFTLLSTKTPYGRPLRIDYSHSNIKIQ 317
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T ++ LF G + I L ++ +++G FV + A A+
Sbjct: 248 TNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEE 307
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + V+ + + + NLF+ NL + ++ L
Sbjct: 308 LNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKL 367
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F + + +++ + D+ +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 368 EEEF--KPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVA 424
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 7/170 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++++ +++ FV + + A AA+ ++ R +
Sbjct: 167 DNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVY 226
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + KK+ ++ N+++ N+ K+ E F G +++ + D
Sbjct: 227 VG-KHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK--ITSIYLEKDA 283
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
+S G+GFV+F+ + A A+ K G+ + V + Q R +T+E
Sbjct: 284 EGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRA-QKKRERTEE 332
>gi|119484580|ref|XP_001262069.1| nucleic acid-binding protein [Neosartorya fischeri NRRL 181]
gi|119410225|gb|EAW20172.1| nucleic acid-binding protein [Neosartorya fischeri NRRL 181]
Length = 307
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+ + T ED++ +Q G V ++L ++ +RG A+V S D A + + + +
Sbjct: 132 NLFYDVTAEDLKNHMQQFGVVEKVDLITDNRGMSRGFAYVHFDSIDSAKSCVEAMHLQAY 191
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
EGR + YA + PVQP + L++ NLSFE +DL E F + +V+
Sbjct: 192 EGRRIIAQYASSGGGS--RPVQP---VSRTLYLGNLSFEMTDRDLNELF-RDINNVIDVR 245
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V + G+ F + A+ A GK GR +RV
Sbjct: 246 VSVDRRTGQPRGFAHAEFLDVESAQKAFEILSGKAPFGRRIRV 288
>gi|429892776|gb|AGA18933.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|332019507|gb|EGI59986.1| Heterogeneous nuclear ribonucleoprotein 27C [Acromyrmex echinatior]
Length = 340
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L + W +T E+++ F ++G V+D + +S+ R+RG FVT P + L N
Sbjct: 1 KLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVSLVLQN 60
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEG 219
++ +GRT+ K NP +PK F +F+ L DLR +F G
Sbjct: 61 -GPHQLDGRTIDP-----KPCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDLRSYFTRFG 114
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
V+ +++ ++S G+GF+SF+ ++ + ++
Sbjct: 115 -KVMEVVIMYDQEKKKSRGFGFLSFEDEEAVDRCVA 149
>gi|429892772|gb|AGA18931.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 1 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 60
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 61 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 114
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 115 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 150
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E+++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E ++L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDENLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|50305507|ref|XP_452713.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641846|emb|CAH01564.1| KLLA0C11495p [Kluyveromyces lactis]
Length = 445
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 24/213 (11%)
Query: 87 AAVNTEQREEEYSKTRLVAQ-------NVPWTSTHEDIRALFEQHGTVLDIELSMHSK-- 137
A + E+ E + KT L + + W+ E ++ FE G V+ + M+ +
Sbjct: 175 ADDDEEKSESKKPKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARV-MYERGT 233
Query: 138 NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQP 189
+R+RG +V A A+ + E +GR + + + K + F V
Sbjct: 234 DRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPS 293
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
+P T LF+ NLSFEA +L E F G ++VS + H + G+G+V + S +
Sbjct: 294 EPSDT--LFLGNLSFEADRDNLYEIFGKYG-EIVSVRIPTHPETEQPKGFGYVQYGSIED 350
Query: 250 AETAISAFQGKLFMGRPLRV---APSRQFARLQ 279
A A QG+ RP+R+ P + F Q
Sbjct: 351 ATKAFEGLQGEYINNRPVRLDYSIPKQNFGNNQ 383
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 18/206 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++RE KTR + +N+ T+T +D++ +F + G + + + +++ FV
Sbjct: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAK------IKKKNPFPPV---QPKPFATFNLFI 199
PD+A ++ L +F+ + V A+ ++ K F F NL++
Sbjct: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL L+E F SE + S +V+ D S G GFV+F + + A A++ G
Sbjct: 327 KNLDDSISDDKLKELF-SEFGTITSCKVM-RDPNGISRGSGFVAFSTAEEASKALTEMNG 384
Query: 260 KLFMGRPLRVAPSR----QFARLQTK 281
K+ + +PL VA ++ + ARLQ +
Sbjct: 385 KMVVSKPLYVALAQRKEERRARLQAQ 410
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 21/191 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
++ T L ++ + + LF Q G V+ + + S R+ G +V + EAT
Sbjct: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Query: 156 AALNNLESYEFEGRTLKVNYA----KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
AL+ L G+ +++ Y+ I+K N+FI NL K L
Sbjct: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKS-----------GAGNIFIKNLDKSIDNKAL 144
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+ F + G +++S +V D+ +S GYGFV F +++ A++AI G L + + V P
Sbjct: 145 HDTFSTFG-NILSCKVA-TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
Query: 272 SRQFARLQTKE 282
F R Q +E
Sbjct: 203 ---FLRKQERE 210
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 112 STHEDIRA-LFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170
S ED+ A LF Q G+V ++ N AFV +A+ AL + R
Sbjct: 54 SVSEDLIATLFNQIGSVTKTKVIFDGAND--PYAFVEFLDHSQASQALQTMNKRLLLDRE 111
Query: 171 LKVNYAKIKKKNPFPPVQPKPFAT---FNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
+KVN+A P QP T F++F+ +LS E + LRE F G DV A+V
Sbjct: 112 MKVNWA------VEPGQQPSKVDTTRHFHVFVGDLSSEVDNQKLREAFQPFG-DVSDAKV 164
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
I N +S GYGFVS+ ++ AE AI G+ R +R
Sbjct: 165 IRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 206
>gi|429892784|gb|AGA18937.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 1 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 60
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 61 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 114
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 115 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 150
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + + +++G FV +P++A A+ + YE G K+
Sbjct: 77 EALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLY 136
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL L++ F + G +
Sbjct: 137 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-KIT 195
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ DN RS G+GFV F+ A A++ GK+ +PL VA
Sbjct: 196 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 241
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T + ++ FE +G + ++ R++G FV PD
Sbjct: 160 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 219
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 220 EATKAVTEMNGKMMCTKPLYVALAQRKE 247
>gi|195156455|ref|XP_002019115.1| GL26194 [Drosophila persimilis]
gi|194115268|gb|EDW37311.1| GL26194 [Drosophila persimilis]
Length = 223
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|345493904|ref|XP_001606757.2| PREDICTED: protein alan shepard-like isoform 1 [Nasonia
vitripennis]
Length = 559
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 30/212 (14%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 232 QQSEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 291
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 292 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 335
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 336 -EGLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKALHGGKDPLLV 393
Query: 270 APSRQFARLQT-KEGLHSD----ETSDDLNIN 296
+FA + K+ L+ ET D++ +N
Sbjct: 394 ----KFADGGSKKKSLYKSTIWRETGDNMTLN 421
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N T + ++ +FE++GT+ ++ + ++RG FV P+ A A+ +
Sbjct: 214 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLD 273
Query: 161 LESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKD 210
L E EG+ + V A+ K K F ++ + + NL++ NL +
Sbjct: 274 LNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDER 333
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
LR+ F G + SA+V+ + RS G+GFV F + A A++ G++ +PL VA
Sbjct: 334 LRKEFTPFG-TITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVA 390
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
T L +N+P + + + FEQ G V+ + + + ++ F++ D+A AA+
Sbjct: 182 TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 160 NLESYEFEGRTL---------------KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
+ E EG+ L K Y KIK++ + + + NL++ NL
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQE------RIQRYQGVNLYVKNLDD 295
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+ LRE F G ++ SA+VI N R S G+GFV F S + A A++ G++F G
Sbjct: 296 SIDDEGLREAFKQFG-NITSAKVITDLNGR-SKGFGFVCFSSPEEATKAVTEMNGRIFGG 353
Query: 265 RPLRVA 270
+PL V
Sbjct: 354 KPLYVG 359
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R + Y L +N+ + E +R F+Q G + ++ R++G FV SP
Sbjct: 277 QERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSP 336
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EAT A+ + F G+ L V A+ K+
Sbjct: 337 EEATKAVTEMNGRIFGGKPLYVGLAQRKE 365
>gi|406605793|emb|CCH42784.1| Polyadenylate-binding protein 1 [Wickerhamomyces ciferrii]
Length = 436
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 27/193 (13%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P++ + ++ +F + G + ++ + R+RG V+ + ++ A+ YE
Sbjct: 249 NLPFSINWQALKDIFREAGEITHADVRLDEGGRSRGFGIVSFKNKEDVDNAIKQFNGYEI 308
Query: 167 EGRTLKVNYAK--------------------IKKKNPF-PPVQPKPFATFNLFIANLSFE 205
EGR L V+ K ++K + F V+ +++ NL F
Sbjct: 309 EGRQLDVHEGKNNSRFESEQKREPESSYKPNVQKNSDFTEGVEANGEKNSTIYVDNLPFA 368
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
DL E F + G VSA I +D R AG V F+S++ AE AI+ + GR
Sbjct: 369 TSNDDLFELFETAGR--VSAAEIKYDPTGRPAGSAVVKFESEESAEAAINELNEYSYGGR 426
Query: 266 PLRVAPSRQFARL 278
PL + FA+L
Sbjct: 427 PLNIT----FAKL 435
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
F +F+ANL F + L++ F E ++ A+V D RS G+G VSFK+K+ + AI
Sbjct: 243 FEVFVANLPFSINWQALKDIF-REAGEITHADVRL-DEGGRSRGFGIVSFKNKEDVDNAI 300
Query: 255 SAFQGKLFMGRPLRVAPSRQFARLQTKE 282
F G GR L V + +R ++++
Sbjct: 301 KQFNGYEIEGRQLDVHEGKNNSRFESEQ 328
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
+ N+P+ ++++D+ LFE G V E+ R G A V S + A AA+N L
Sbjct: 360 IYVDNLPFATSNDDLFELFETAGRVSAAEIKYDPTGRPAGSAVVKFESEESAEAAINELN 419
Query: 163 SYEFEGRTLKVNYAKI 178
Y + GR L + +AK+
Sbjct: 420 EYSYGGRPLNITFAKL 435
>gi|345493906|ref|XP_003427178.1| PREDICTED: protein alan shepard-like isoform 2 [Nasonia
vitripennis]
Length = 579
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 19/212 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 232 QQSEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 291
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV I++ P NL+IANL + D+
Sbjct: 292 VAAEGAVKALVAKGIQAQMAKVGIWLIRRLASQQEQDPT-----NLYIANLPLSFKENDV 346
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 347 -EGLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKALHGGKDPLLV 404
Query: 270 APSRQFARLQT-KEGLHSD----ETSDDLNIN 296
+FA + K+ L+ ET D++ +N
Sbjct: 405 ----KFADGGSKKKSLYKSTIWRETGDNMTLN 432
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED ++ +F G L +++ M + R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPK---PFATFNLF 198
G+ +EA A+ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + S +V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVSTKPLYVA 366
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+RG FV + + A A+ + R + V + K +++ K N++I
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE-YGAKVMEFTNVYI 195
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
N + K L+E F + G + +S +V+ DN RS G+GFV++ + + A+ A++ G
Sbjct: 196 KNFGEDMDDKRLKEIFSAFG-NTLSVKVMM-DNSGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Query: 260 KLFMGRPLRVA 270
K GR + V
Sbjct: 254 KEVNGRMVYVG 264
>gi|429892778|gb|AGA18934.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EE+Y T + +N+ + +R F + G ++ + ++ +G AFV P++A
Sbjct: 197 EEKY--TNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDA 254
Query: 155 TAALNNLESYEFEGRTLKVNYAK------------IKKKNPFPPVQPKPFATFNLFIANL 202
A + F + L V A+ K+K+ ++ K N+++ N+
Sbjct: 255 RWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAK---VSNIYVKNI 311
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
+ ++LR+ F G +++ + D +S G+GFV F + + A A+ F GK+F
Sbjct: 312 NVGVTEEELRKHFSQCG--TITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMF 369
Query: 263 MGRPLRVAPSRQ 274
G+PL VA +++
Sbjct: 370 HGKPLYVATAQK 381
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 105 AQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY 164
+N+P + T+ ++ +F++ G ++ +++ ++RG FV D A AA+ L S
Sbjct: 116 VKNLPESITNAVLQDMFKKFGNIVSCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNST 175
Query: 165 EFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
G+ + V K KK + K N+++ NL + LRE F SE +VS
Sbjct: 176 TVAGKEIYV--GKFMKKTDRAKAEEK---YTNVYMKNLDADVNEDLLREKF-SEFGKIVS 229
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK------LFMGRPLRVAPSRQFARL 278
I D GY FV+F + A A G L++GR + A Q R
Sbjct: 230 L-AIAKDENGLCKGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLRE 288
Query: 279 QTKE 282
Q KE
Sbjct: 289 QFKE 292
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+ EE+ K + + +N+ T E++R F Q GT+ +L K +++G FV
Sbjct: 292 EKHEEQMMKAKVSNIYVKNINVGVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCF 351
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
+P+EA A+ F G+ L V A+ K+
Sbjct: 352 STPEEAIDAVKTFHGKMFHGKPLYVATAQKKE 383
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 13/190 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ E LF + G + LS + ++RG FV S ++A AA+
Sbjct: 228 TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVET 287
Query: 161 LESYEFEGRTLKVNYAKIK-------KKNPFPPVQPK--PFATFNLFIANLSFEARAKDL 211
L E GR L V A+ K +K+ Q K + NL+I NL + + L
Sbjct: 288 LHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKL 347
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV-- 269
R F E + +++ + D S G+GFV F S A A+S K+ +PL V
Sbjct: 348 RAEF--EPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSL 405
Query: 270 APSRQFARLQ 279
A R+ R Q
Sbjct: 406 AQRREVRRQQ 415
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+++ +Y L +N+ E +RA FE GT+ ++ KN ++G FV SP
Sbjct: 322 QEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSP 381
Query: 152 DEATAALNNLESYEFEGRTLKVNYAK 177
DEAT A++ + + + L V+ A+
Sbjct: 382 DEATKAVSEMNNKMIGSKPLYVSLAQ 407
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R+ G A+V + + AL+ L + R ++ +++
Sbjct: 66 VFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQLNYSLIKNRACRIMWSQ- 124
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL + K L + F + G +V+S +V D S G
Sbjct: 125 --RDP----ALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCKVA-TDEHGNSKG 176
Query: 239 YGFVSFKSKKVAETAISAFQGKLF 262
YGFV +++ + AE AI + G L
Sbjct: 177 YGFVHYETAEAAENAIKSVNGMLL 200
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + E LF G + I L +++G FV + A A+
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + V+ + A + NLF+ NL ++ L
Sbjct: 293 LNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKL 352
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 353 EEEFKPFGT-ITSAKVMV-DEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVA 409
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ T E + F+ GT+ ++ + +++G FV +P+EAT
Sbjct: 332 KYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATK 391
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + + G+ L V A+ K
Sbjct: 392 AITEMNTRMINGKPLYVALAQRK 414
>gi|451850002|gb|EMD63305.1| hypothetical protein COCSADRAFT_161812 [Cochliobolus sativus
ND90Pr]
Length = 489
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ W + +R FE G ++ ++ R +G +V +A A ++
Sbjct: 237 LFVGNLSWNIDEDWLRREFESFGEIVGCRVITDRETGRAKGFGYVEFAKAADAAKAQKDM 296
Query: 162 ESYEFEGRTLKVNYAKIKKK-------NPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
YE +GR L V+++ ++K N F + P T LFI NLSF+ + ++E
Sbjct: 297 HEYELDGRPLNVDFSTPRQKPDANARANKFGDKRSAPSNT--LFIGNLSFDCTNETIQEV 354
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G +V + + G+G+V F S++ A A+ A G+ GRPLRV
Sbjct: 355 FAEYG-NVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALEALHGQDVAGRPLRV 408
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ + T+E I+ +F ++G V + L + +G +V GS +EATAAL L
Sbjct: 337 LFIGNLSFDCTNETIQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALEAL 396
Query: 162 ESYEFEGRTLKVNYAKIKKKN 182
+ GR L+V++A + N
Sbjct: 397 HGQDVAGRPLRVDFAAPRDDN 417
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPTGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|345309900|ref|XP_001517591.2| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like, partial
[Ornithorhynchus anatinus]
Length = 220
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
+V W S + ++ E+ G V +EL M ++ ++RG A V + A L +
Sbjct: 42 DVKWQSLKDLVK---EKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSL 98
Query: 167 EGRTLKVNYAKIKKKNPFP-----PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
GR LKV K++P +Q +F+ANL ++ K L+E F G
Sbjct: 99 SGRPLKV------KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFCMAG-- 150
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
VV I D +S G G V+F+ A AIS F G+L RP+ V
Sbjct: 151 VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 198
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 218 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 277
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 278 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 336
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 337 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 379
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 124 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 182
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + L+E F S+ +S +V+ D
Sbjct: 183 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RD 238
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGK------LFMGR 265
+S G+GFVS++ + A A+ GK +F+GR
Sbjct: 239 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 278
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 298 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 356
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 357 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 386
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEMDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|380027075|ref|XP_003697261.1| PREDICTED: ELAV-like protein 2-like [Apis florea]
Length = 362
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + +EE SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLGQASQEE--SKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
A NL+++ L +DL F G + S I DN P S G
Sbjct: 114 A--NLYVSGLPKNMTQQDLENLFSPYGRIITSR--ILCDNITVRQFVTGGGDYLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMG 264
GF+ F + AE AI G + G
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTIPKG 195
>gi|220905282|ref|YP_002480594.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869581|gb|ACL49916.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 88
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T E ++ LF ++G VL ++L S R RG FV M EA +A+ L+++
Sbjct: 9 NLPWSATEEQVQDLFAEYGNVLSVKLVSDRDTGRARGFGFVEM-EDGEADSAIEALDNFS 67
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPK 190
F GRTL+VN AK P P QP+
Sbjct: 68 FGGRTLRVNEAK-----PRAPRQPR 87
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T T ED++ LF +GT+ + ++R FV +PD A AA+
Sbjct: 214 TNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVER 273
Query: 161 LESYEFEG-RTLKVNYAKIKKKNPF---PPVQPKPFATF------NLFIANLSFEARAKD 210
L R L V A+ K + ++ + + + NL++ NL +
Sbjct: 274 LNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEK 333
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L++ F SE + S +V+ N RS G GFVSF + + A A++ GKL +PL VA
Sbjct: 334 LKDLF-SEFGTITSCKVMIDSN-GRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVA 391
Query: 271 PSR-----------QFARLQTKEGL 284
++ QFA+++ G+
Sbjct: 392 VAQRKEERKAHLQAQFAQIRAPGGM 416
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 18/217 (8%)
Query: 72 FSATTQDPFVDSSSAAAV-----NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGT 126
+A P S +AAA ++ L ++ E + LF Q
Sbjct: 1 MAAAISSPMAQSVAAAATPVIAPGVALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQ 60
Query: 127 VLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP 185
+ I + +K + G A+V + +A+ A+ L G+ +++ +++ ++P
Sbjct: 61 IASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQ---RDP-- 115
Query: 186 PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFK 245
+ N+FI NL K L + F + G V+S +V D+ +S GYGFV F
Sbjct: 116 --SIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGT-VLSCKVAL-DSSGQSKGYGFVQFD 171
Query: 246 SKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
+++ A+ AI G L + + V F R Q +E
Sbjct: 172 NEEAAQNAIKRLNGMLINDKQVYVG---LFIRRQERE 205
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E+ L +N+ + + E ++ LF + GT+ ++ + S R++G FV+ +P+E
Sbjct: 311 RYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEE 370
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKK 181
A+ ALN + + L V A+ K++
Sbjct: 371 ASKALNEMNGKLIGRKPLYVAVAQRKEE 398
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|194862724|ref|XP_001970091.1| GG10443 [Drosophila erecta]
gi|195471631|ref|XP_002088106.1| GE14209 [Drosophila yakuba]
gi|190661958|gb|EDV59150.1| GG10443 [Drosophila erecta]
gi|194174207|gb|EDW87818.1| GE14209 [Drosophila yakuba]
Length = 421
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|157118056|ref|XP_001658986.1| hypothetical protein AaeL_AAEL008164 [Aedes aegypti]
gi|108875838|gb|EAT40063.1| AAEL008164-PA [Aedes aegypti]
Length = 363
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM--------HSKNRNRGLAFVTM 148
E ++T L+ +P T T E+IR+LF G V ++L K ++ G FV
Sbjct: 30 ETARTNLIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYGFVNF 89
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
+A A+N L + + LKV++A+ + NL+I+ L
Sbjct: 90 HRSQDAEQAVNVLNGLRLQNKVLKVSFARPSSEG---------IKGANLYISGLPKTITQ 140
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
++L F G +++++ V+ + + G GF+ F +K AE AI+A G
Sbjct: 141 EELETIFRPYG-EIITSRVLVQEGNDKPKGVGFIRFDQRKEAERAIAALNG 190
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + +F Q G ++ L + + +G FV + ++A A+
Sbjct: 219 TNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEA 278
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L + G L V A+ KKN V K + + NLF+ NL +
Sbjct: 279 LNESDLNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N + S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 337 KLEEEFAPYGT-ITSAKVMRSENGK-SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 270 A 270
A
Sbjct: 395 A 395
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 10/191 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D AA +E + E S L ++ T + + +F G+V I + + +
Sbjct: 19 DDQKQAATGSESQSVENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 78
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G A+V + A++ L +GR ++ +++ P ++ K + N+FI
Sbjct: 79 LGYAYVNFNDHEAGRKAIDQLNYTPIKGRLCRIMWSQRD-----PSLRKK--GSGNIFIK 131
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + K L + F G D++S+++ +N + S G+GFV F+ + A+ AI A G
Sbjct: 132 NLHPDIDNKALYDTFSVFG-DILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 261 LFMGRPLRVAP 271
L G+ + VAP
Sbjct: 190 LLNGQEIYVAP 200
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + +E F G
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEKFQEMFAQFG-P 244
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ------GKLFMGR 265
+VSA + D + G+GFV++++ + A A+ A KL++GR
Sbjct: 245 IVSAS-LEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGR 293
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T T ED++ LF +GT+ + ++R FV +PD A AA+
Sbjct: 214 TNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVER 273
Query: 161 LESYEFEG-RTLKVNYAKIKKKNPF---PPVQPKPFATF------NLFIANLSFEARAKD 210
L R L V A+ K + ++ + + + NL++ NL +
Sbjct: 274 LNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEK 333
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L++ F SE + S +V+ N RS G GFVSF + + A A++ GKL +PL VA
Sbjct: 334 LKDLF-SEFGTITSCKVMIDSN-GRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVA 391
Query: 271 PSR-----------QFARLQTKEGL 284
++ QFA+++ G+
Sbjct: 392 VAQRKEERKAHLQAQFAQIRAPGGM 416
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 18/217 (8%)
Query: 72 FSATTQDPFVDSSSAAAV-----NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGT 126
+A P S +AAA ++ L ++ E + LF Q
Sbjct: 1 MAAAISSPMAQSVAAAATPVIAPGVALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQ 60
Query: 127 VLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP 185
+ I + +K + G A+V + +A+ A+ L G+ +++ +++ ++P
Sbjct: 61 IASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQ---RDP-- 115
Query: 186 PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFK 245
+ N+FI NL K L + F + G V+S +V D+ +S GYGFV F
Sbjct: 116 --SIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGT-VLSCKVAL-DSSGQSKGYGFVQFD 171
Query: 246 SKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
+++ A+ AI G L + + V F R Q +E
Sbjct: 172 NEEAAQNAIKRLNGMLINDKQVYVG---LFIRRQERE 205
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDE 153
R E+ L +N+ + + E ++ LF + GT+ ++ + S R++G FV+ +P+E
Sbjct: 311 RYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEE 370
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKK 181
A+ ALN + + L V A+ K++
Sbjct: 371 ASKALNEMNGKLIGRKPLYVAVAQRKEE 398
>gi|195338791|ref|XP_002036007.1| GM16252 [Drosophila sechellia]
gi|195577167|ref|XP_002078444.1| Hrb27C [Drosophila simulans]
gi|194129887|gb|EDW51930.1| GM16252 [Drosophila sechellia]
gi|194190453|gb|EDX04029.1| Hrb27C [Drosophila simulans]
Length = 421
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEMDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|194760296|ref|XP_001962377.1| GF15435 [Drosophila ananassae]
gi|190616074|gb|EDV31598.1| GF15435 [Drosophila ananassae]
Length = 421
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|67537616|ref|XP_662582.1| hypothetical protein AN4978.2 [Aspergillus nidulans FGSC A4]
gi|40741866|gb|EAA61056.1| hypothetical protein AN4978.2 [Aspergillus nidulans FGSC A4]
gi|259482149|tpe|CBF76354.1| TPA: pre-RNA splicing factor Srp2, putative (AFU_orthologue;
AFUA_3G10100) [Aspergillus nidulans FGSC A4]
Length = 296
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HGT E+ + + G F+ +A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMN-----GFGFIEYEDAMDARD 57
Query: 157 ALNNLESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ ++K FP P P+P T F + I+ L E +
Sbjct: 58 IVPAFHGSDFKGERLTVQFARGPRRKENFPVPTDRPNLPRPRRTIFRMIISGLP-ETSWQ 116
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
DL++F G DVV +E R G G V F++ +TA+ G+ F G
Sbjct: 117 DLKDFARQSGLDVVYSETG------REPGRGIVEFETANDLKTAVEKLDGREFKG 165
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + LF + G ++ L + + +G FV ++A A+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L E G L V A+ KKN V K + + NLF+ NL +
Sbjct: 279 LNDSELNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N + S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 337 KLEEEFAPYGT-ITSAKVMRTENGK-SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 270 A 270
A
Sbjct: 395 A 395
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 10/191 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D AA +E + E S L ++ + + + +F G+V I + + +
Sbjct: 19 DDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 78
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G A+V + A+ L +GR ++ +++ P ++ K + N+FI
Sbjct: 79 LGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD-----PSLRKK--GSGNIFIK 131
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + K L + F G D++S+++ +N + S G+GFV F+ + A+ AI A G
Sbjct: 132 NLHPDIDNKALYDTFSVFG-DILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 261 LFMGRPLRVAP 271
L G+ + VAP
Sbjct: 190 LLNGQEIYVAP 200
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + +E F G
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEQFQELFAKFG-P 244
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+VSA + D + G+GFV+++ + A A+ A KL++GR
Sbjct: 245 IVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 293
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + +F + G + E+ M + +++G FV +P+EA A+ L EG LK++
Sbjct: 227 ETLEKVFAKFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 285
Query: 175 ----------YAKIKKKNP-FPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+A++KKK+ + + + NL++ NL L++ F S G ++
Sbjct: 286 VCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYG-NIT 344
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
SA+V+ +N R S G+GFV F+ + A +A++ K+ +PL VA
Sbjct: 345 SAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 390
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G VL I + + R + G A+V P +A A++ +
Sbjct: 40 HPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALH 99
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G+ +++ +++ ++P + N+FI NL K + + F G +++S +V
Sbjct: 100 GKPMRIMWSQ---RDP----AMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG-NILSCKV 151
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A+ AI G L G+ + V
Sbjct: 152 AI-DEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG 193
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R ++Y L +N+ T + ++ FE +G + ++ R++G FV P+
Sbjct: 309 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 368
Query: 153 EATAALNNLES 163
EAT+A+ + S
Sbjct: 369 EATSAVTEMNS 379
>gi|307206990|gb|EFN84815.1| RNA-binding motif, single-stranded-interacting protein 1
[Harpegnathos saltator]
Length = 382
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 42 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 101
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV +++ + P NL+IANL + D+
Sbjct: 102 LAAEGAVKALVAKGIQAQMAKVGIWLLRRLDSQQEQDPT-----NLYIANLPLNFKENDV 156
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 157 -ETLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKALAGAKDPLLV 214
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L +++ +++G FV+ +EA A+ + + G+ L V
Sbjct: 205 ERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + D A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E F G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGDDMDDERLKELFGKYG-KTLSVKVM-TDPTGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
GFVSF+ + A A+ GK G+ L V +++ A Q +
Sbjct: 234 GFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAE 275
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + LF + G ++ L + + +G FV ++A A+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L E G L V A+ KKN V K + + NLF+ NL +
Sbjct: 279 LNDSELNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N + S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 337 KLEEEFAPYGT-ITSAKVMRTENGK-SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 270 A 270
A
Sbjct: 395 A 395
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 10/191 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D AA +E + E S L ++ + + + +F G+V I + + +
Sbjct: 19 DDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 78
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G A+V + A+ L +GR ++ +++ P ++ K + N+FI
Sbjct: 79 LGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD-----PSLRKK--GSGNIFIK 131
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + K L + F G D++S+++ +N + S G+GFV F+ + A+ AI A G
Sbjct: 132 NLHPDIDNKALYDTFSVFG-DILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 261 LFMGRPLRVAP 271
L G+ + VAP
Sbjct: 190 LLNGQEIYVAP 200
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + +E F G
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEQFQELFAKFG-P 244
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+VSA + D + G+GFV+++ + A A+ A KL++GR
Sbjct: 245 IVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 293
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + LF + G ++ L + + +G FV ++A A+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L E G L V A+ KKN V K + + NLF+ NL +
Sbjct: 279 LNDSELNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N + S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 337 KLEEEFAPYGT-ITSAKVMRTENGK-SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 270 A 270
A
Sbjct: 395 A 395
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 10/191 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D AA +E + E S L ++ + + + +F G+V I + + +
Sbjct: 19 DDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 78
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G A+V + A+ L +GR ++ +++ P ++ K + N+FI
Sbjct: 79 LGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD-----PSLRKK--GSGNIFIK 131
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + K L + F G D++S+++ +N + S G+GFV F+ + A+ AI A G
Sbjct: 132 NLHPDIDNKALYDTFSVFG-DILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 261 LFMGRPLRVAP 271
L G+ + VAP
Sbjct: 190 LLNGQEIYVAP 200
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + +E F G
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEQFQELFAKFG-P 244
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+VSA + D + G+GFV+++ + A A+ A KL++GR
Sbjct: 245 IVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 293
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E L NV + H D ++ LF Q G + +++ S ++RG FV
Sbjct: 240 QKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFV 299
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNL 197
+EA A++++ E G+ L V A+ + K F V+ + + NL
Sbjct: 300 NFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNL 359
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + L+E F + G + SA+V+ + S G+GFV F S + A A++
Sbjct: 360 YVKNLDDSINDERLKEVFSAYGV-ITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEM 416
Query: 258 QGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 417 NGRIVGTKPLYVA 429
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G++L ++ +++++ +RG FV + + A A+N + R + V + K ++
Sbjct: 182 FSTFGSILSSKV-VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ 240
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + + N+++ NL + + L++ F G + + + D+ +S G+G
Sbjct: 241 KRE-AELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFG--KMQSVKVMRDSNGQSRGFG 297
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
FV+F+ + A+ A+ GK G+ L V +++ A Q++
Sbjct: 298 FVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSE 338
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|332025572|gb|EGI65735.1| Protein alan shepard [Acromyrmex echinatior]
Length = 382
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 42 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 101
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV +++ + P NL+IANL + D+
Sbjct: 102 MAAEGAVKALVAKGIQAQMAKVGIWLLRRLDSQQEQDPT-----NLYIANLPLTFKENDV 156
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 157 -EALLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKALTGAKDPLLV 214
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|242006645|ref|XP_002424159.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
gi|212507484|gb|EEB11421.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
Length = 423
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L + W +T E ++ F ++G V+D + +++ R+RG FVT P L N
Sbjct: 20 KLFVGGLSWETTQEALQRYFSRYGDVVDCVVMKNTESGRSRGFGFVTFADPTNVGVVLQN 79
Query: 161 LESYEFEGRTLK------VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
+ +GRT+ +K K+ N +P V F+ L DLR+F
Sbjct: 80 -GPHVLDGRTIDPKPCNPRTLSKPKRNNGYPKV----------FLGGLPSNVTETDLRQF 128
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
F+ G V+ +++ ++S G+GF+SF+ + E ++
Sbjct: 129 FMRYG-KVMEVVIMYDQEKKKSRGFGFLSFEDEDAVERCVA 168
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 11/168 (6%)
Query: 110 WTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W+ E ++ FE G V+ + M +R+RG +V A A+ ++ E +G
Sbjct: 171 WSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEMQGKEIDG 230
Query: 169 RTLKVNYAKIK-------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
R + V+ + K + F V +P T LF+ NLSF A + E F G +
Sbjct: 231 REINVDMSTSKPAAGNNDRAKKFGDVPSEPSET--LFLGNLSFNADRDAISELFSKYG-E 287
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++S + H + G+G+V + + + A+ A+ QG+ RP+R+
Sbjct: 288 IISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGLQGEYIDNRPVRL 335
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+F+ LS+ + L++ F G VVSA VI RS GYG+V F+ K AE AI
Sbjct: 164 IFVGRLSWSIDDEWLKKEFEHIGG-VVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKE 222
Query: 257 FQGKLFMGRPLRV 269
QGK GR + V
Sbjct: 223 MQGKEIDGREINV 235
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 93 QREEEYSKTRLVAQNVPWT--STHEDIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVT 147
QR +E ++ L NV H D + L F ++G + + + + +G FV
Sbjct: 223 QRMKELGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVA 282
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN-----------PFPPVQPKPFATFN 196
PD A A++ L EG LK++ + +KK+ + + + N
Sbjct: 283 FVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQKKSERTAELKRKYEALKQERVQRYQGVN 342
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ N+ E LRE F + G + SA+V+ +N RS G+GFV F+ + A A++
Sbjct: 343 LYVKNIEEEMTDDGLREHFANFG-SITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTE 400
Query: 257 FQGKLFMGRPLRVA 270
K+ +PL VA
Sbjct: 401 MNSKMIGAKPLYVA 414
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 121 FEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + +R + G A+V P +A AL+ + GR +++ +++
Sbjct: 75 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQ-- 132
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V D S GY
Sbjct: 133 -RDP----AARRAGNGNIFIKNLDRVIDNKSIYDTFSLFG-NILSCKVA-TDEEGNSKGY 185
Query: 240 GFVSFKSKKVAETAISAFQGKLF 262
GFV F+++ A TAI G L
Sbjct: 186 GFVHFETEASALTAIEKVNGMLL 208
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R + Y L +N+ T + +R F G++ ++ + R++G FV P
Sbjct: 332 QERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKP 391
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EATAA+ + S + L V A+ K+
Sbjct: 392 EEATAAVTEMNSKMIGAKPLYVALAQRKE 420
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 184 FPPVQPKP-FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV 242
+PP P ++ +L+I +L + L E F G V+S V + R S GY +V
Sbjct: 43 YPPNAPNATYSMASLYIGDLHPDVTESMLFEKFSMAG-PVLSIRVCRDNTSRLSLGYAYV 101
Query: 243 SFKSKKVAETAISAFQGKLFMGRPLRV 269
+F+ AE A+ ++ GRP+R+
Sbjct: 102 NFQQPADAERALDTMNFEVIHGRPMRI 128
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 3/168 (1%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ ++ I F G +L +++ + ++G FV + A A+ +
Sbjct: 148 KNLDRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFETEASALTAIEKVNGML 207
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V + + + + N+FI N K L E F G +++
Sbjct: 208 LSDKKVFVGKFQPRAQR-MKELGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGE--ITS 264
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
V+ DN + G+GFV+F A A+ G L+++ R
Sbjct: 265 AVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCR 312
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|125984017|ref|XP_001355773.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
gi|54644090|gb|EAL32832.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
Length = 421
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|66804019|gb|AAY56658.1| heterogeneous nuclear ribonucleoprotein [Drosophila simulans]
Length = 421
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + LF + G ++ L + + +G FV ++A A+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L E G L V A+ KKN V K + + NLF+ NL +
Sbjct: 279 LNDSELNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N + S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 337 KLEEEFAPYGT-ITSAKVMRTENGK-SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 270 A 270
A
Sbjct: 395 A 395
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 10/191 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D AA +E + E S L ++ + + + +F G+V I + + +
Sbjct: 19 DDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 78
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G A+V + A+ L +GR ++ +++ P ++ K + N+FI
Sbjct: 79 LGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD-----PSLRKK--GSGNIFIK 131
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + K L + F G D++S+++ +N + S G+GFV F+ + A+ AI A G
Sbjct: 132 NLHPDIDNKALYDTFSVFG-DILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 261 LFMGRPLRVAP 271
L G+ + VAP
Sbjct: 190 LLNGQEIYVAP 200
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + +E F G
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEQFQELFAKFG-P 244
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+VSA + D + G+GFV+++ + A A+ A KL++GR
Sbjct: 245 IVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 293
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
++TRL N+P+ + D+R +FEQ+G V +I L + ++RG AFVTM S A +A
Sbjct: 45 NRTRLYVGNLPFRISENDLREIFEQYGQVNEINLIVDKMTGQSRGFAFVTMESSQAAQSA 104
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNP 183
+NNL GR + VN AK +++ P
Sbjct: 105 INNLNGSSVSGRQIVVNEAKPREERP 130
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL F DLRE F G V +I +S G+ FV+ +S + A++AI+
Sbjct: 49 LYVGNLPFRISENDLREIFEQYG-QVNEINLIVDKMTGQSRGFAFVTMESSQAAQSAINN 107
Query: 257 FQGKLFMGRPLRV 269
G GR + V
Sbjct: 108 LNGSSVSGRQIVV 120
>gi|383861182|ref|XP_003706065.1| PREDICTED: protein alan shepard-like [Megachile rotundata]
Length = 405
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 67 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 126
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 127 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 170
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 171 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKALQGAKDPLLV 228
>gi|357621997|gb|EHJ73625.1| RNA-binding protein lark [Danaus plexippus]
Length = 341
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ N+ +T D+R LFE+ GTV++ ++ R FV M + A+ NL
Sbjct: 8 KIFVGNLSDKTTDADLRPLFEKFGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ +K+ AK +K P T +F+ NL+ + RA ++RE F G
Sbjct: 61 NGEVVHGQAIKIEAAKSRKAPSTP--------TTKIFVGNLTDKTRAPEVRELFQKFGT- 111
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ + YGFV + AI G + G+P++V S +R++ +
Sbjct: 112 VVECDIVRN--------YGFVHLDASGDVNEAIKELNGMMVDGQPMKVQLS--TSRVRQR 161
Query: 282 EGLHSDE 288
G+ E
Sbjct: 162 PGMGDPE 168
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
TF +F+ NLS + DLR F G VV +++ + YGFV ++++V
Sbjct: 5 GTFKIFVGNLSDKTTDADLRPLFEKFGT-VVECDIVRN--------YGFVHMENEQVGRE 55
Query: 253 AISAFQGKLFMGRPLRV 269
AI G++ G+ +++
Sbjct: 56 AIQNLNGEVVHGQAIKI 72
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|17136728|ref|NP_476869.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|24582366|ref|NP_723228.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|24582368|ref|NP_723229.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|281364530|ref|NP_001162897.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|281364532|ref|NP_001162898.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|386769237|ref|NP_001245917.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|386769239|ref|NP_001245918.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|386769241|ref|NP_001245919.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
gi|76803817|sp|P48809.2|RB27C_DROME RecName: Full=Heterogeneous nuclear ribonucleoprotein 27C;
Short=Hrb27-C; AltName: Full=HRP48.1; AltName:
Full=hnRNP 48
gi|7297190|gb|AAF52456.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|7297191|gb|AAF52457.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|17862734|gb|AAL39844.1| LD46853p [Drosophila melanogaster]
gi|21711665|gb|AAM75023.1| GH26816p [Drosophila melanogaster]
gi|22945819|gb|AAN10605.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|66804007|gb|AAY56657.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
gi|272406922|gb|ACZ94188.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|272406923|gb|ACZ94189.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|383291369|gb|AFH03591.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|383291370|gb|AFH03592.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|383291371|gb|AFH03593.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
Length = 421
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|406602740|emb|CCH45698.1| Nuclear localization sequence-binding protein [Wickerhamomyces
ciferrii]
Length = 467
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 15/194 (7%)
Query: 87 AAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAF 145
AA +Q+ +E T V + + W+ E ++ FE G V+ + + ++RG +
Sbjct: 222 AAPAKKQKVDEEPATLFVGR-LSWSIDDEWLKREFEPLGGVISARVIFERATGKSRGYGY 280
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK----------KKNPFPPVQPKPFATF 195
V S A AL + E +GR + ++ + K + + F P T
Sbjct: 281 VDFDSKSAAEKALKEYQGREIDGRPINLDMSTGKPHASNNRSNDRASKFGDTPSAPSDT- 339
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
LF+ NLSF A +L E F SE +VS + H + + G+G+V + S A+ A+
Sbjct: 340 -LFLGNLSFNANRDNLSEVF-SEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAKAALE 397
Query: 256 AFQGKLFMGRPLRV 269
A G+ GRP+R+
Sbjct: 398 ALNGEYIEGRPVRL 411
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + +++ +F ++G+++ + + H +G +V GS DEA AAL L
Sbjct: 340 LFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAKAALEAL 399
Query: 162 ESYEFEGRTLKVNYA 176
EGR ++++++
Sbjct: 400 NGEYIEGRPVRLDFS 414
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + LF + G ++ L + + +G FV ++A A+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L E G L V A+ KKN V K + + NLF+ NL +
Sbjct: 279 LNDSELNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N + S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 337 KLEEEFAPYGT-ITSAKVMRTENGK-SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 270 A 270
A
Sbjct: 395 A 395
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 10/191 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D AA +E + E S L ++ + + + +F G+V I + + +
Sbjct: 19 DDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 78
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G A+V + A+ L +GR ++ +++ P ++ K + N+FI
Sbjct: 79 LGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD-----PSLRKK--GSGNIFIK 131
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + K L + F G D++S+++ +N + S G+GFV F+ + A+ AI A G
Sbjct: 132 NLHPDIDNKALYDTFSVFG-DILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 261 LFMGRPLRVAP 271
L G+ + VAP
Sbjct: 190 LLNGQEIYVAP 200
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + +E F G
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEQFQELFAKFG-P 244
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+VSA + D + G+GFV+++ + A A+ A KL++GR
Sbjct: 245 IVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 293
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + + NV + ED ++ +FE++G + ++ +RG FV
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFV 228
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A L E EG+ L V A+ K K F ++ + + N
Sbjct: 229 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 288
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 289 LYVKNLDDTIDDERLRKEFAPFG-TITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 345
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 346 MNGRIVGTKPLYVA 359
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K L + F + G +++S +V
Sbjct: 70 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKSIDNKALFDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 122 A-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVG 163
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M R++G FV SP+
Sbjct: 279 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPE 337
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 338 EATKAVTEMNGRIVGTKPLYVALAQRKE 365
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 12/176 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W+ E ++ F G V+ + M +R+RG +V A AL +
Sbjct: 151 LFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKALKEM 210
Query: 162 ESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
+ E +GR + V+ + K + F V +P T LF+ NLSF+A +L E
Sbjct: 211 QGKEIDGRPINVDMSTSKPAGGASNDRAKKFGDVPSEPSDT--LFLGNLSFDADRDNLYE 268
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G +++S + H + G+G+V + + + A+ A+ A QG+ RP+R+
Sbjct: 269 IFGKFG-EIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESINDRPVRL 323
>gi|121705498|ref|XP_001271012.1| pre-RNA splicing factor Srp2, putative [Aspergillus clavatus NRRL
1]
gi|119399158|gb|EAW09586.1| pre-RNA splicing factor Srp2, putative [Aspergillus clavatus NRRL
1]
Length = 296
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ ++A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSSHGSGKITEIKLMN-----GFGFIEY---EDAMD 54
Query: 157 ALNNL-ESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARA 208
A + + + +F+G L V +A+ ++K FP P P+P T F + I+ L E
Sbjct: 55 ARDVVPDGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTVFRMLISGLP-ETSW 113
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+DL++F G DVV +E R G GFV F++ +TA+ G+ F G
Sbjct: 114 QDLKDFARQSGLDVVYSETG------REPGRGFVEFETAADLKTAVDKLDGRDFKG 163
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
++ ++RE+E + T + +N T E +R +FE+ G + + M ++RG
Sbjct: 166 ISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRV-MTKDGKSRGF 224
Query: 144 AFVTMGSPDEATAALNNLESYE-------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF- 195
FV P++A A+ L E + GR K N +++ K F ++ + +
Sbjct: 225 GFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYH 284
Query: 196 --NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR+ F G + SA+V+ + RS G+GFV F + A A
Sbjct: 285 GVNLYVKNLDDTIDDERLRKEFAPYG-TITSAKVMLDEG--RSKGFGFVCFSAPDEATKA 341
Query: 254 ISAFQGKLFMGRPLRVA 270
++ G++ +PL VA
Sbjct: 342 VTEMNGRIVGSKPLYVA 358
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 21/164 (12%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDPIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL + K + + F + G +++S +V
Sbjct: 70 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
D +S GYGFV F++++ A T+I G K+++GR
Sbjct: 122 A-QDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGR 164
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F +GT+ ++ M + R++G FV +PD
Sbjct: 278 ERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKV-MLDEGRSKGFGFVCFSAPD 336
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKK 181
EAT A+ + + L V A+ K++
Sbjct: 337 EATKAVTEMNGRIVGSKPLYVALAQRKEE 365
>gi|340712092|ref|XP_003394598.1| PREDICTED: protein alan shepard-like isoform 2 [Bombus terrestris]
Length = 549
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 212 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 271
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 272 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 315
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 316 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKALQGAKDPLLV 373
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|11042|emb|CAA44505.1| hrp48.1 [Drosophila melanogaster]
Length = 385
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 89 VNTEQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
+ ++R+ + K + + +N+ ++T +D+ +F +GT+ + + ++R F
Sbjct: 87 LRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSGYGTITSAVVMIGMDGKSRCFDF 146
Query: 146 VTMGSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF---N 196
V SPD+A A+ L + + GR K + ++ K F + N
Sbjct: 147 VNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQN 206
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL LRE F + G +++ I D S G GFVSF +++ A A++
Sbjct: 207 LYLKNLDDGITDDQLRELFSNFGK--ITSCKIMRDQNGVSKGSGFVSFSTREEASQALTE 264
Query: 257 FQGKLFMGRPLRVA 270
GK+ G+PL VA
Sbjct: 265 MNGKMISGKPLYVA 278
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
+ N+FI NL K L + F + G ++S +V D+ +S G+GFV ++ ++ A++
Sbjct: 9 GSANIFIKNLDKTIDNKTLHDTFSAFGA-ILSCKVAM-DDIGQSKGFGFVQYEKEESAQS 66
Query: 253 AISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
A+ + G L +P+ V P F R Q ++
Sbjct: 67 AMKSLNGMLINDKPVYVGP---FLRKQERD 93
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
++Y L +N+ T + +R LF G + ++ ++G FV+ + +EA+
Sbjct: 200 DKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEAS 259
Query: 156 AALNNLESYEFEGRTLKVNYAKIKK 180
AL + G+ L V +A+ K+
Sbjct: 260 QALTEMNGKMISGKPLYVAFAQRKE 284
>gi|195438186|ref|XP_002067018.1| GK24781 [Drosophila willistoni]
gi|194163103|gb|EDW78004.1| GK24781 [Drosophila willistoni]
Length = 422
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 90 NTEQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 158 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 217
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFI 199
+ A A+ ++ E +GR + + + K KK P +P + LF+
Sbjct: 218 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP----SDTLFL 273
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF A + E F G +VVS + H + G+G+V F + + A+ A+ A QG
Sbjct: 274 GNLSFNADRDAIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 332
Query: 260 KLFMGRPLRV 269
+ RP+R+
Sbjct: 333 EYIDNRPVRL 342
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 90 NTEQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFI 199
+ A A+ ++ E +GR + + + K KK P +P + LF+
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP----SDTLFL 271
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF A + E F G +VVS + H + G+G+V F + + A+ A+ A QG
Sbjct: 272 GNLSFNADRDAIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 330
Query: 260 KLFMGRPLRV 269
+ RP+R+
Sbjct: 331 EYIDNRPVRL 340
>gi|223996717|ref|XP_002288032.1| ribonuceoprotein [Thalassiosira pseudonana CCMP1335]
gi|220977148|gb|EED95475.1| ribonuceoprotein [Thalassiosira pseudonana CCMP1335]
Length = 356
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L VP T ED+ LFE +G +LD+ + + +RG AFVT S ++A +N
Sbjct: 3 KLFVGQVPKTLAEEDLALLFEPYGRILDMTVIRDRRTGTHRGCAFVTYESGEDAMRVVNE 62
Query: 161 LES-YEFEGRT----LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
+ Y FEG ++ +I++ + + + LF+ L EA +RE F
Sbjct: 63 MHGKYRFEGAMWPAQVRPAQGEIEEGD---DERDEGDEMAKLFVGQLPREADEDFVRELF 119
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM---GRPLRV 269
S G D+ +I N G FV F+ + +A+ AI A G++ + +P+RV
Sbjct: 120 TSYG-DITGIYIIKKRNNEAKNGCAFVKFRERDMAQAAIDALDGEVHLEGVDKPIRV 175
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 185 PPVQPKPF----------ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR 234
P V P P A NLFI +L + DL F G V+SA+V
Sbjct: 259 PGVHPPPLMVPARPREGPAGANLFIYHLPIDLTDADLATAFNPFGH-VISAKVYVDRYTG 317
Query: 235 RSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
S G+GFVS+ S AE AI G + L+V R
Sbjct: 318 ESKGFGFVSYDSVMAAELAIEQMNGFQIGNKRLKVQHKR 356
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 61
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 62 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 121
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F G + SA+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 122 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 177
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEINGKVIFVGR 265
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
>gi|340709266|ref|XP_003393232.1| PREDICTED: ELAV-like protein 2-like [Bombus terrestris]
Length = 533
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + +EE SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLGQASQEE--SKTNLIVNYLPQSMTQDEIRSLFASIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
A NL+++ L +DL F G + S I DN P S G
Sbjct: 114 A--NLYVSGLPKNMTQQDLENLFNPYGRIITSR--ILCDNITVRQFVTGGGDYLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMG 264
GF+ F + AE AI G + G
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTVPKG 195
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 180 ESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 239
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 240 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 298
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 299 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 341
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 94 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 152
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 153 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 208
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 209 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 240
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 260 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 318
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 319 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 348
>gi|255730137|ref|XP_002549993.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131950|gb|EER31508.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 442
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
L + W + ++ FE G V+ + M + ++RG +V A AL +
Sbjct: 217 LFVGRLSWNIDDDWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFEGKSFAEKALAEM 276
Query: 162 ESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
+ E +GR + ++ + K + F Q P T LFI NLSF A L
Sbjct: 277 QGKEIDGRPINLDMSTGKPHASKSNDRAKQFGDSQSPPSDT--LFIGNLSFNANRDGLFN 334
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
F G +V+S + H + ++ G+G+V F S A+ A+ A G+ GRP R+
Sbjct: 335 TFGEYG-NVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGQYIEGRPCRL 389
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 90 NTEQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFI 199
+ A A+ ++ E +GR + + + K KK P +P + LF+
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP----SDTLFL 271
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF A + E F G +VVS + H + G+G+V F + + A+ A+ A QG
Sbjct: 272 GNLSFNADRDAIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 330
Query: 260 KLFMGRPLRV 269
+ RP+R+
Sbjct: 331 EYIDNRPVRL 340
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 90 NTEQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 158 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 217
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFI 199
+ A A+ ++ E +GR + + + K KK P +P + LF+
Sbjct: 218 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP----SDTLFL 273
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF A + E F G +VVS + H + G+G+V F + + A+ A+ A QG
Sbjct: 274 GNLSFNADRDAIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 332
Query: 260 KLFMGRPLRV 269
+ RP+R+
Sbjct: 333 EYIDNRPVRL 342
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 90 NTEQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 160 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 219
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFI 199
+ A A+ ++ E +GR + + + K KK P +P + LF+
Sbjct: 220 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP----SDTLFL 275
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF A + E F G +VVS + H + G+G+V F + + A+ A+ A QG
Sbjct: 276 GNLSFNADRDAIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 334
Query: 260 KLFMGRPLRV 269
+ RP+R+
Sbjct: 335 EYIDNRPVRL 344
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 13/175 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + E +R F +HG V + + +++G FV SP+ A +A+ NL+ Y
Sbjct: 215 KNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYT 274
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPK----------PFATFNLFIANLSFEARAKDLREFF 215
+ +T V A+ KK ++ K A NL+I NL + LRE F
Sbjct: 275 EDEKTWVVCRAQ-KKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELF 333
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G +++ + D S G FV+F S A A++ GK+ +PL VA
Sbjct: 334 NEFG--TITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVA 386
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R E+ + L +N+ + E +R LF + GT+ + + +RG AFV SPD
Sbjct: 305 ERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFSSPD 364
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
EAT A+ + + L V A+ K++ P + A + A RA LR
Sbjct: 365 EATRAVTEMNGKMVGAKPLYVALAQRKEE----PHAGRWHAGYGPVHATAGCSGRADVLR 420
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G V+ I + R+ G A+V S +A A++ L G+ ++V Y++
Sbjct: 52 FSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAIDVLNFQVINGKPIRVLYSQRD 111
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
P V+ N+FI NL K L + F G + SA+V D+ S GY
Sbjct: 112 -----PAVRRSGVG--NIFIKNLDKAIDNKALLDTFAQFG-TITSAKVAM-DSAGNSKGY 162
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
GFV F++ + A+ AI G + + V P
Sbjct: 163 GFVQFETAEAAQAAIDNVNGMELNDKQVYVGP 194
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
T +L++ +L L E F S G VVS V RRS GY +V+F+S A A
Sbjct: 31 TSSLYVGDLETSVTEAQLYEKFSSIG-PVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHA 89
Query: 254 ISAFQGKLFMGRPLRV 269
I ++ G+P+RV
Sbjct: 90 IDVLNFQVINGKPIRV 105
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 201 ESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 260
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + A
Sbjct: 261 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITRA 319
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
EV+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 320 EVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 362
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 115 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 173
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 174 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPTGKSKGF 229
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 230 GFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 261
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ E+ M R++G FV SP
Sbjct: 281 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEV-MLEDGRSKGFGFVCFSSP 339
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 340 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 369
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 13/190 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + ++ R LF G V L + R+RG FV + +EA A++
Sbjct: 233 TNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDT 292
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L +F+GR L V+ A+ K + + + + + + NL+I NL + + L
Sbjct: 293 LHDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKL 352
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV-- 269
R+ F E + +++ + S G+GFV F S A A++ K+ +PL V
Sbjct: 353 RDAF--EPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSL 410
Query: 270 APSRQFARLQ 279
A R+ R Q
Sbjct: 411 AQRREVRRQQ 420
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G V I + + R+ G A+V + + AL L +GR ++ +++
Sbjct: 71 IFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQLNYSLIKGRACRIMWSQ- 129
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L + F + G +V+S +V D RS G
Sbjct: 130 --RDP----ALRKTGQGNIFIKNLDDAIDNKALHDTFAAFG-NVLSCKVA-TDEMGRSKG 181
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
YGFV +++ + AE+AI A G L + + V
Sbjct: 182 YGFVHYETNEAAESAIKAVNGMLLNDKKVYVG 213
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ +T +D++ +F + GT+ + R++ FV SPD+A A+ L +
Sbjct: 224 KNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKK 283
Query: 166 FE------GRTLKVNYAKIKKKNPFPP---VQPKPFATFNLFIANLSFEARAKDLREFFI 216
F+ GR K + +++ K F + NL++ NL LRE F
Sbjct: 284 FDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFA 343
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR--- 273
G +++ + D+ S G GFV+FKS + A A++ K+ +PL VA ++
Sbjct: 344 EYG--TITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRKE 401
Query: 274 -QFARLQTK 281
+ ARLQ +
Sbjct: 402 DRKARLQAQ 410
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F Q G V+ + + + R+ G A+V SP +A AL L G+ +++ Y+
Sbjct: 59 VFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEMLNFTPINGKPIRIMYS-- 116
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
N P ++ T N+FI NL K L + F G +++S +V D S G
Sbjct: 117 ---NRDPSLRKS--GTANIFIKNLDKSIDNKALYDTFCVFG-NILSCKVA-TDASGESKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
YGFV ++ + A+ AI G L + + V P F R Q ++
Sbjct: 170 YGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGP---FIRKQERD 210
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 116 DIRALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL++ G +L +++ + ++G FV + A AA++ L + +
Sbjct: 140 DNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVY 199
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V K++ P Q K N+++ NLS DL+E F G +++ V+ +
Sbjct: 200 VGPFIRKQERDNSPGQVK---FNNVYVKNLSENTTEDDLKEIFGKFG--TITSAVVMREG 254
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
RS +GFV+F+S A A+ GK F
Sbjct: 255 DGRSKCFGFVNFESPDDAAQAVQELNGKKF 284
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N ++ ++Y T L +N+ + + +R LF ++GT+ ++ S +RG FV
Sbjct: 311 NLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFK 370
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
S ++A+ AL + S + L V A+ K+
Sbjct: 371 SAEDASRALAEMNSKMVGSKPLYVALAQRKE 401
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F +L++ +L + L + F G VVS V N RRS GY +V++ S A
Sbjct: 37 FPATSLYVGDLDVSVQDAQLFDVFAQVGG-VVSVRVCRDVNTRRSLGYAYVNYSSPADAA 95
Query: 252 TAISAFQGKLFMGRPLRV 269
A+ G+P+R+
Sbjct: 96 RALEMLNFTPINGKPIRI 113
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L +++ S +++G FV+ ++A A+ + + G+ + V
Sbjct: 205 ERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + D A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E F G +S +V+ D+ +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGDDMDDERLKELFSKYG-KTLSVKVM-TDSSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVSF+ + A A+ GK +F+GR
Sbjct: 234 GFVSFEKHEDANKAVEEMNGKDINGKMVFVGR 265
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
DEAT A+ + + L V A+ K++
Sbjct: 344 DEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N E ++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F G + SA+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 311 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 90 NTEQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ ++ +R+RG +V
Sbjct: 129 NKKQKNEESGEPATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVD 188
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIAN 201
+ A A+ ++ E +GR + + + K + K F + LF+ N
Sbjct: 189 FENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGN 248
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
LSF A + E F G +VVS + H + G+G+V F S + ++ A+ + QG+
Sbjct: 249 LSFNADRDTIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEY 307
Query: 262 FMGRPLRV 269
RP+R+
Sbjct: 308 IDNRPVRL 315
>gi|340712090|ref|XP_003394597.1| PREDICTED: protein alan shepard-like isoform 1 [Bombus terrestris]
Length = 540
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 212 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 271
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 272 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 315
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 316 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKALQGAKDPLLV 373
>gi|242822492|ref|XP_002487897.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
gi|218712818|gb|EED12243.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
Length = 479
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 13/179 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ W E +R FE+ G + + ++ R+RG +V A AA
Sbjct: 233 LFVGNLSWNVDEEWLRREFEEFGELSGVRIMTERESGRSRGFGYVEYADASSAKAAYEAK 292
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQ-----PKPFA------TFNLFIANLSFEARAKD 210
+ E +GRT+ ++YAK + N P + + F + LF+ NL F
Sbjct: 293 KDAEIDGRTINLDYAKPRDANNQAPREKAQNRARSFGDQTSPESNTLFVGNLVFGVDENA 352
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+RE F +G + + R GYG+V F S A A++ QG GR +R+
Sbjct: 353 VREVFEGQG-QIQGIRLPTDAETGRPKGYGYVEFSSVDEARQALNDLQGTDIGGRAIRL 410
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 117 IRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+R +FE G + I L ++ R +G +V S DEA ALN+L+ + GR +++++
Sbjct: 353 VREVFEGQGQIQGIRLPTDAETGRPKGYGYVEFSSVDEARQALNDLQGTDIGGRAIRLDF 412
Query: 176 A 176
+
Sbjct: 413 S 413
>gi|393245114|gb|EJD52625.1| hypothetical protein AURDEDRAFT_111257 [Auricularia delicata
TFB-10046 SS5]
Length = 103
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALN 159
+++ N+ W +T E +R+ F+ G +LD I + R+RG FVT GSP EA +A+
Sbjct: 3 SKVYVGNLSWNTTDETLRSAFQDFGQILDSIVMRDRDTGRSRGFGFVTFGSPQEADSAIQ 62
Query: 160 NLESYEFEGRTLKVNYAKIK 179
L E +GR +KVN A +
Sbjct: 63 ALNDQELDGRRIKVNLANAR 82
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NLS+ + LR F G ++ + V+ + RS G+GFV+F S + A++AI A
Sbjct: 5 VYVGNLSWNTTDETLRSAFQDFG-QILDSIVMRDRDTGRSRGFGFVTFGSPQEADSAIQA 63
Query: 257 FQGKLFMGRPLRV 269
+ GR ++V
Sbjct: 64 LNDQELDGRRIKV 76
>gi|270014670|gb|EFA11118.1| hypothetical protein TcasGA2_TC004718 [Tribolium castaneum]
Length = 350
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHG------------TVLDIELSMHSKNRNRGLA 144
E SKT L+ +P T T E+IR+LF G TV + S ++ G
Sbjct: 27 EESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTVPGVITSPLLTGQSLGYG 86
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSF 204
FV P++A A+N L + +T+KV+YA+ P + A NL+++ L
Sbjct: 87 FVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKGA--NLYVSGLPK 137
Query: 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+DL F G ++++ ++ + S G GF+ F + AE AI G + G
Sbjct: 138 NMTQQDLESLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTIPKG 196
>gi|156841314|ref|XP_001644031.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156114664|gb|EDO16173.1| hypothetical protein Kpol_1026p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 437
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMG 149
TE + + T V + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 169 TEDSNDGETATIFVGR-LSWSVDDEWLKNEFEHIGDVIGARVIYERGTDRSRGYGYVDFS 227
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFIAN 201
S A A+ + + +GR + + + K + F V +P T LF+ N
Sbjct: 228 SKSAAERAVKEMHGKQIDGREINCDMSTSKPAGGNGGDRAKKFGDVPSQPSDT--LFLGN 285
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
LSF A + E F G +++S + H + G+G+V + + A++A+ A QG+
Sbjct: 286 LSFNADRDQIYELFSKHG-EIISVRLPTHPETEQPKGFGYVQYGNVNDAQSALDALQGEY 344
Query: 262 FMGRPLRV 269
RP+R+
Sbjct: 345 IDNRPVRL 352
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T ++ LF +G + I L +++G FV A A+
Sbjct: 244 TNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEA 303
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + ++ + + + NLFI NL + ++ L
Sbjct: 304 LNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKL 363
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D+ +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 364 EEEFKPFGT-ITSAKVMV-DDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVA 420
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 7/170 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L +++ +++ FV + + A AA+ N+ R +
Sbjct: 163 DNKALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVF 222
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + KK+ + N+++ N+ K+ E F G +++ + D
Sbjct: 223 VG-KHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGK--ITSIYLEKDQ 279
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
+S G+GFV+++ K A A+ A K G+ + V + Q R +T+E
Sbjct: 280 DGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRA-QKKRERTEE 328
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E + F+ GT+ ++ + +++G FV +P+EAT
Sbjct: 343 KYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATK 402
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + G+ L V A+ K
Sbjct: 403 AITEMNQRMINGKPLYVALAQRK 425
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 14/194 (7%)
Query: 89 VNTEQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
V ++R+ + KT+ + +N+ ++T ED+ +F ++G + + + ++R F
Sbjct: 198 VRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGF 257
Query: 146 VTMGSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPPV---QPKPFATFN 196
+ +PD A+ A+ L + + GR K + +++ K F + N
Sbjct: 258 INFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLN 317
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL L E F + G +++ + D S G GFV+F +++ A A++
Sbjct: 318 LYLKNLDDSIGDDQLCELFSNFGK--ITSYKVMRDQNGLSKGSGFVAFSTREEASQALTE 375
Query: 257 FQGKLFMGRPLRVA 270
GK+ G+PL VA
Sbjct: 376 MNGKMISGKPLYVA 389
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 104 VAQNVPWTSTH----------EDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPD 152
VAQ +P TS + + LF Q G V+ + + + R+ G A+V +P
Sbjct: 27 VAQPLPTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPL 86
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+A AL L + ++V Y+ ++P + + N+FI NL K L
Sbjct: 87 DAARALEVLNFAALNNKPIRVMYSN---RDP----SSRRSGSANIFIKNLDKTIDNKTLH 139
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
E F S G ++S +V D +S G+GFV + ++ A+ AI + G L +P+ V P
Sbjct: 140 ETFSSFGT-ILSCKVAV-DEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGP- 196
Query: 273 RQFARLQTKE 282
F R Q ++
Sbjct: 197 --FVRKQERD 204
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N + E +R +FE+ G + ++ +++G FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
SP+ A A++ L E EG+ L V A+ K K F ++ + + N
Sbjct: 238 AFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP------RRSAGYGFVSFKSKKVA 250
L++ NL + LR+ F G + SA+V+ +N RS G+GFV F S + A
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFG-TITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEA 356
Query: 251 ETAISAFQGKLFMGRPLRVA 270
A++ G++ +PL VA
Sbjct: 357 TKAVTEMNGRIVGSKPLYVA 376
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ ++G FV + + A ++ + G+ + V I +
Sbjct: 119 FSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRF-IPR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + K N+++ N + + LR F E + +++ + + +S G+G
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMF--EKFGKITSYKVMSKDDGKSKGFG 235
Query: 241 FVSFKSKKVAETAISAFQGK-LFMGRPLRVAPSRQFARLQ 279
FV+F+S + AETA+ A GK L G+PL V +++ A Q
Sbjct: 236 FVAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQ 275
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + GR +++ ++
Sbjct: 31 FSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDLIRGRPIRIMWS--- 87
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+++P + N+FI NL K + + F + G +++S +V D S GY
Sbjct: 88 QRDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCKVA-QDENGTSKGY 141
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++++ A +I G L G+ + V
Sbjct: 142 GFVHFETEEAANKSIEKVNGMLLNGKKVYVG 172
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 29/221 (13%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E T + +N E ++ LF Q G L +++ + ++RG FV
Sbjct: 177 QEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNL 197
+EA A++N+ E GR L V A+ + K F ++ + + NL
Sbjct: 237 NFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 297 YVKNLDDIIDDEKLRKEFSPYGV-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKLFMGRPLRVA------------PSRQFARLQTKEGLHS 286
G++ +PL VA S+ RL T GL+
Sbjct: 354 NGRIVSTKPLYVALAQRKEERKAILTSQYMQRLSTLRGLNG 394
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N +RG FV + + A A+N + R + V + K ++
Sbjct: 119 FSTFGNILSCKV-VCDENGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQ 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N+++ N + + L+E F S+ +S +V+ +N +S G+G
Sbjct: 178 ERE-AELGARALEFTNIYVKNFEGDMDDECLQELF-SQFGKTLSVKVMVDENG-QSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
FV+F+ + A+ A+S GK GR L V +++ + Q++
Sbjct: 235 FVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSE 275
>gi|224128049|ref|XP_002320231.1| predicted protein [Populus trichocarpa]
gi|222861004|gb|EEE98546.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGS 150
E ++++ L N+P +S D+ +F+ G+VL +E+S + + +RG ++TMGS
Sbjct: 92 ELKKKQAKPCELYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPETGVSRGCGYITMGS 151
Query: 151 PDEATAALNNLESYEFEGRTLKVNYA---KIKKKNPFPPVQPKPFATF------NLFIAN 201
+ A A++ L+ + GR ++V Y+ ++NP + P L++ N
Sbjct: 152 VESARNAVSALDGSDVGGREMRVRYSVEISSGRRNP-EALNSAPTKHLFYESPHKLYVGN 210
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L + + +LR F G VVSA V+ ++ Y F+SF S + A+S G
Sbjct: 211 LPWSTKPDELRNLFNHFGI-VVSARVLSDRKGGKNRTYAFLSFLSDAERDAALS-MNGTE 268
Query: 262 FMGRPLRV 269
F R L V
Sbjct: 269 FYDRMLVV 276
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N T + ++ +FE++GT+ ++ ++RG FV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
PD A A+ L + EG+ + V A+ K K F ++ + + N
Sbjct: 238 AFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + A A++
Sbjct: 298 LYVKNLDDTIDDERLRKEFTPFG-TITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 MNGRIVGSKPLYVA 368
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 19 HTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 79 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A +I G L G+ + V
Sbjct: 131 A-QDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVG 172
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F S G V+S V RRS GY +
Sbjct: 2 NPGAPNYP----MASLYVGDLHTDITEAMLFEKFSSAG-PVLSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDMIKGRPIRI 84
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L++ F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKDLF-SQFGKTLSVKVM-RDPSGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEIGGKVIFVG 264
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|198425950|ref|XP_002126161.1| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D) [Ciona intestinalis]
Length = 564
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 11/167 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T ED+R LF G + +L ++ G FV +A A
Sbjct: 86 SKTNLIINYLPQAMTQEDLRNLFSSIGELESCKLIRDKLTGQSLGYGFVNYVKAADAEKA 145
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N+L + +T+KV++A+ P P+ NL+++ L +DL+ F
Sbjct: 146 INSLNGLRMQQKTIKVSFAR-----PSTPL----IKDANLYVSGLPKSMTQEDLQRIFHP 196
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
G ++++ ++ + S G GFV F + AE AISA G + G
Sbjct: 197 FG-RIITSRILVEPSTGMSRGVGFVRFDKRPEAENAISALNGTIPAG 242
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T + +R +FE G ++ ++ + + RG FV+ + A A+
Sbjct: 192 TNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEE 251
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNLFIANLSFEARAKDL 211
L + E EG+ + V A+ K K F ++ + + NL++ NL + + L
Sbjct: 252 LNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERL 311
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F S+ + SA V+ R+ G+GFV F S + A A++ G++ + +PL VA
Sbjct: 312 RKEF-SQFGTITSARVMTEGG--RTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVA 367
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + +GR +++ +++
Sbjct: 32 FSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDAIKGRPIRIMWSQ-- 89
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S ++ N S GY
Sbjct: 90 -RDP----SLRKSGVGNIFIKNLDKNIDNKALYDTFSAFG-NILSCKIAMDQNG--SLGY 141
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++++ A +I G L G+ + V
Sbjct: 142 GFVHFETEEAARNSIEKVNGMLLNGKKVFVG 172
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++M +N + G FV + + A ++ + G+ + V + +
Sbjct: 120 FSAFGNILSCKIAM-DQNGSLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRF-MSR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + K N+++ NL+ K LRE F G ++SA+++ + ++ G+G
Sbjct: 178 KERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFG-KIISAKMMNTEEGQKR-GFG 235
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
FVSF + A A+ K G+ + V +++ A Q +
Sbjct: 236 FVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAE 276
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ E +R F Q GT+ + M R +G FV SP+
Sbjct: 287 ERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARV-MTEGGRTKGFGFVCFSSPE 345
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 346 EATKAVTEMNGRIVVAKPLYVALAQRKE 373
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
++++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 227 DNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 286
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 287 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 345
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 346 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 388
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 141 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 199
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E +L+E F S+ +S +V+ D +S G+
Sbjct: 200 EREAELGAKAKEFT--NVYIKNFGEEVDDDNLKELF-SQFGKTLSVKVM-RDPSGKSKGF 255
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFVS++ + A A+ GK G+ + V
Sbjct: 256 GFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 286
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 307 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 365
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 366 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 395
>gi|328784054|ref|XP_393384.4| PREDICTED: protein alan shepard-like [Apis mellifera]
Length = 554
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 217 QQTEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 276
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 277 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 320
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 321 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKALQGAKDPLLV 378
>gi|323348433|gb|EGA82678.1| Nsr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 254
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 110 WTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W+ E ++ FE G V+ + +R+RG +V + A A+ ++ E +G
Sbjct: 17 WSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDG 76
Query: 169 RTLKVNYAKIK------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
R + + + K + F +P T LF+ NLSF A + E F G +V
Sbjct: 77 RPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT--LFLGNLSFNADRDAIFELFAKHG-EV 133
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
VS + H + G+G+V F + + A+ A+ A QG+ RP+R+
Sbjct: 134 VSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRL 180
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T ++ L + G + L + N+G FV + ++A +
Sbjct: 216 TNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEE 275
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L + EF+G+ L VN A+ K K + + + A + NLFI NL K L
Sbjct: 276 LNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKL 335
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ +N +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 336 EEEFAPYGT-ITSAKVMTTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 11/185 (5%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR-GLAFV 146
N E + E S + V P S + +F G V I + + + G A+V
Sbjct: 23 GTNEENQSETVSASLYVGDLDPSVS-EAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYV 81
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEA 206
D A A+ L +G+ ++ +++ P ++ K N+FI NL +
Sbjct: 82 NFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRD-----PSLRKK--GAGNIFIKNLHPDI 134
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266
K L + F G +++S++V D +S G+G+V F+ + A AI A G L G+
Sbjct: 135 DNKALYDTFSVFG-NILSSKVA-TDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQE 192
Query: 267 LRVAP 271
+ V P
Sbjct: 193 IYVGP 197
>gi|383767221|ref|YP_005446202.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
gi|381387489|dbj|BAM04305.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
Length = 112
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ N+ W +T ED+ ALF +G+V D I L+ R+RG FVTMG D A A++
Sbjct: 2 KMYVGNLAWRTTTEDLEALFSNYGSVSDAIVLTDRETGRSRGFGFVTMGDED-AKKAIDA 60
Query: 161 LESYEFEGRTLKVNYAK 177
L+ +FEGR L+VN A+
Sbjct: 61 LDGSDFEGRPLRVNEAQ 77
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
+++ NL++ +DL F + G V A V+ RS G+GFV+ + A+ AI
Sbjct: 1 MKMYVGNLAWRTTTEDLEALFSNYG-SVSDAIVLTDRETGRSRGFGFVTMGDED-AKKAI 58
Query: 255 SAFQGKLFMGRPLRVAPSRQFA 276
A G F GRPLRV +++ A
Sbjct: 59 DALDGSDFEGRPLRVNEAQERA 80
>gi|380030450|ref|XP_003698861.1| PREDICTED: protein alan shepard-like [Apis florea]
Length = 551
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 214 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 273
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 274 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 317
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 318 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKALQGAKDPLLV 375
>gi|350398873|ref|XP_003485334.1| PREDICTED: protein alan shepard-like [Bombus impatiens]
Length = 478
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 141 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 200
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + ++ AK ++++P NL+IANL + D+
Sbjct: 201 VAAEGAVKALVA-----KGIQAQMAKQQEQDPT-----------NLYIANLPLSFKENDV 244
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 245 -EGLLAQYGQVISTR-ILRDTAGQSKGVGFARMESKEKCEQIIQMFNGKALQGAKDPLLV 302
>gi|345315973|ref|XP_001509329.2| PREDICTED: nucleolin-like, partial [Ornithorhynchus anatinus]
Length = 638
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158
SKT +V N+ +++T E ++ +FE+ I++ + + R +G AFV +P+EA AL
Sbjct: 435 SKT-IVVNNLAYSATEEGLQEVFEK---ATSIKVPQNHQGRPKGYAFVEFSTPEEAKEAL 490
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N+L + E EGRT+++ K N PF T LF+ LS E + L+E F
Sbjct: 491 NSLNNVEIEGRTIRLEMQGSKNTNARGGFS-HPFKT--LFVKGLSEETTEETLKESFDGS 547
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSF 244
V A ++ S G+GFV F
Sbjct: 548 ----VRARIVTDRETGSSKGFGFVDF 569
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+P+ T E+++ +FE +D+ L ++G+A++ + +A AL +
Sbjct: 343 LFVKNLPYKVTQEEMKEVFED---AVDVRLVTGKDGMSKGIAYIEFKTEADADKALEEKQ 399
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA----TFNLFIANLSFEARAKDLREFFISE 218
E +GR++ ++Y K + K A + + + NL++ A + L+E F
Sbjct: 400 GTEIDGRSIILDYTGEKSQGLENSRGGKNNAWSGESKTIVVNNLAYSATEEGLQEVF--- 456
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+ ++ + ++ R GY FV F + + A+ A+++ GR +R+
Sbjct: 457 --EKATSIKVPQNHQGRPKGYAFVEFSTPEEAKEALNSLNNVEIEGRTIRL 505
>gi|50261759|gb|AAT72460.1| FCA gamma protein [Lolium perenne]
Length = 668
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L VP ++ +D+R L E+HG VL++ L K + FV + + A A+
Sbjct: 52 VKLFVGTVPRIASEDDVRHLSEEHGDVLEVALIRDKKTGEQQECCFVKYATSEGAKRAIR 111
Query: 160 NLES-YEFEGRT--LKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
L + Y G ++V YA +K+ ++ K LF+A+L+ +A AK++ E F
Sbjct: 112 ALHNQYTIPGAMGPVEVRYADCEKER-LGSIEHK------LFVASLNKQATAKEIEEIFS 164
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D R+S G GFV F SK+ A +A+++ G M
Sbjct: 165 PFGH--VEDVYIMKDGTRQSRGCGFVEFSSKEPALSAVNSLSGTYIM 209
>gi|45198625|ref|NP_985654.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|44984635|gb|AAS53478.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|374108884|gb|AEY97790.1| FAFR107Wp [Ashbya gossypii FDAG1]
Length = 396
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 17/193 (8%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFV 146
AV +Q+ + T V + + W+ E ++ F+ G V+ + +++RG +V
Sbjct: 155 AVAKKQKTDGQPATIFVGR-LSWSVDDEWLKTEFDHIGGVVGARVIYERGTDKSRGYGYV 213
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIK----------KKNPFPPVQPKPFATFN 196
A A+ + E +GR + + + K KK P QP +
Sbjct: 214 DFEDVSYAEKAVKEMHGKEIDGRAINCDMSTSKPASAPREDRAKKYGDTPSQP----SDT 269
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ NLSF A L E F G +V+S + H + G+G+V + S + A+ A+ A
Sbjct: 270 LFLGNLSFNADRDALFELFSKHG-NVISVRIPTHPESNQPKGFGYVQYGSVEEAQAALDA 328
Query: 257 FQGKLFMGRPLRV 269
QG+ RP+R+
Sbjct: 329 LQGEYIDNRPVRI 341
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 83 SSSAAAVNTEQREEEYSKT------RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS 136
+S A+ E R ++Y T L N+ + + + + LF +HG V+ + + H
Sbjct: 244 TSKPASAPREDRAKKYGDTPSQPSDTLFLGNLSFNADRDALFELFSKHGNVISVRIPTHP 303
Query: 137 K-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ 188
+ N+ +G +V GS +EA AAL+ L+ + R ++++++ +P PP Q
Sbjct: 304 ESNQPKGFGYVQYGSVEEAQAALDALQGEYIDNRPVRIDFS-----SPRPPQQ 351
>gi|303326560|ref|ZP_07357003.1| RNA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|345893773|ref|ZP_08844565.1| hypothetical protein HMPREF1022_03225 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864476|gb|EFL87407.1| RNA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|345045809|gb|EGW49708.1| hypothetical protein HMPREF1022_03225 [Desulfovibrio sp.
6_1_46AFAA]
Length = 88
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++ E ++ LF ++G VL ++L S R RG FV M EA AA+ L+++
Sbjct: 9 NLPWSANEEQVQDLFAEYGNVLSVKLVSDRETGRARGFGFVEM-EDGEADAAIEALDNFS 67
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPK 190
F GRTL+VN AK P P QP+
Sbjct: 68 FGGRTLRVNEAK-----PRAPRQPR 87
>gi|299471941|emb|CBN79621.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 362
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 19/173 (10%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ W +T ED+R G V+ E+ H+ R++G VT P A AA+ L + +
Sbjct: 58 NLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNAD 117
Query: 166 FEGRTL--KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS-EGWDV 222
GR + +++ +++ FP +F+ NL + +DL++ F E +D
Sbjct: 118 LGGRPIHIRLDRKEVEASGGFP-----------VFVGNLPWSTTDEDLQQIFAPYEPYDC 166
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF 275
+ + RS G+G + F + ++ + AIS Q RP++V R+
Sbjct: 167 H----VKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREI 215
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+F+ NLS+ ++DLR F S G +VVSAEV H + RS G+G V++ +AE AI
Sbjct: 54 VFVGNLSWGTTSEDLRTFMGSLG-EVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQ 112
Query: 257 FQGKLFMGRPLRVAPSRQ 274
GRP+ + R+
Sbjct: 113 LNNADLGGRPIHIRLDRK 130
>gi|350425139|ref|XP_003494024.1| PREDICTED: ELAV-like protein 2-like [Bombus impatiens]
Length = 371
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 74 ATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
A D V + + + +EE SKT L+ +P + T ++IR+LF G V +L
Sbjct: 3 ANGMDTVVQQNGGSTLGQASQEE--SKTNLIVNYLPQSMTQDEIRSLFASIGEVESCKLI 60
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P++A A+N L + +T+KV+YA+ P +
Sbjct: 61 RDKLTGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKG 113
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN--------------PRRSAG 238
A NL+++ L +DL F G + S I DN P S G
Sbjct: 114 A--NLYVSGLPKNMTQQDLENLFNPYGRIITSR--ILCDNITVRQFVTGGGDYLPGLSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMG 264
GF+ F + AE AI G + G
Sbjct: 170 VGFIRFDQRVEAERAIQELNGTVPKG 195
>gi|195052284|ref|XP_001993272.1| GH13720 [Drosophila grimshawi]
gi|193900331|gb|EDV99197.1| GH13720 [Drosophila grimshawi]
Length = 421
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FGRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>gi|298706390|emb|CBJ29399.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 434
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 113 THEDIRALFEQH-GTVLDIELSMHSKNRNRGL----AFVTMGSPDEATAALNNLESYEFE 167
T E + +LF G L+++L ++R+RG+ F+ + + A L++L E
Sbjct: 28 TEEYVESLFSSIVGQELEVKLI---RDRHRGIVAGYGFIDFRNHETAQLVLDSLNGKPIE 84
Query: 168 GRTLK--VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
G +L+ +N+ K+ ++ P +++F+ +LS E +L+ F+ + V+ A
Sbjct: 85 GTSLRYRLNWGAGGKR-----IEQAP--EYSVFVGDLSPEVTDAELKATFLGKYTSVLGA 137
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKEGLH 285
+V+ + S +GF+ F ++ + A++A G GRP+RVAP+ + +Q + G H
Sbjct: 138 KVVTNPMTGSSKSFGFIRFGDEQERDEALTAMNGAECCGRPIRVAPATKRTSVQGQTGAH 197
Query: 286 SDETSD 291
+ + S+
Sbjct: 198 ATDPSN 203
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 87 AAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
A N E E T + +N E + LF ++G + ++ M S +++G FV
Sbjct: 226 AQRNRELGETAKKFTNVYVKNFGDHYNKETLEKLFAKYGAITSCDV-MTSDGKSKGFGFV 284
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVN----------YAKIKKKNPFPPVQP-KPFATF 195
P+EA AA+ L +G LK++ +A++KKK+ V+ + +
Sbjct: 285 AFAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGV 344
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEV-------------IFHDNPRRSAGYGFV 242
NL++ NL + L++ F + G ++ SA+V + D RS G+GFV
Sbjct: 345 NLYVKNLDESVDDEALKKQFENFG-NITSAKVGLVPLEFFISLFQVMTDENGRSKGFGFV 403
Query: 243 SFKSKKVAETAISAFQGKLFMGRPLRVA 270
F+ + A TA++ K+ +PL VA
Sbjct: 404 CFEKPEEATTAVTEMNSKMVCSKPLYVA 431
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N + ++ R LFEQ G ++ + ++RG FV+ + + A A+
Sbjct: 200 TNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVET 259
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPV-----------QPKPFATFNLFIANLSFEARAK 209
L EF+ R + V A+ +KK+ + K F NL++ NL
Sbjct: 260 LNEKEFDLRRMYV--ARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDA 317
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LR+ F + G +++ + D S G+GFV F S + A A++ G++ + +PL V
Sbjct: 318 KLRQEFANFG--TITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYV 375
Query: 270 A 270
A
Sbjct: 376 A 376
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++++ ++G AFV + + A A+ + G+ + V + + +
Sbjct: 127 FSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHF-MSR 185
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K + NL++ N + + R+ F G +VS V+ D+ +S G+G
Sbjct: 186 KERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCG-KIVSC-VVMRDDSGKSRGFG 243
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FVS+++ + A+ A+ K F R + VA
Sbjct: 244 FVSYETHEAAQKAVETLNEKEFDLRRMYVA 273
>gi|345493908|ref|XP_003427179.1| PREDICTED: protein alan shepard-like isoform 3 [Nasonia
vitripennis]
Length = 577
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 16/214 (7%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 232 QQSEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 291
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNP--FPPVQPKPFATFNLFIANLSFEARAK 209
A A+ L + + + KV I++ + +Q + NL+IANL +
Sbjct: 292 VAAEGAVKALVAKGIQAQMAKVGIWLIRRLASVRWLCMQQQEQDPTNLYIANLPLSFKEN 351
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PL 267
D+ E +++ V+S I D +S G GF +SK+ E I F GK G PL
Sbjct: 352 DV-EGLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKALHGGKDPL 409
Query: 268 RVAPSRQFARLQT-KEGLHSD----ETSDDLNIN 296
V +FA + K+ L+ ET D++ +N
Sbjct: 410 LV----KFADGGSKKKSLYKSTIWRETGDNMTLN 439
>gi|47212234|emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
Length = 565
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 27/182 (14%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ N+ +T E++ +FE +G V+ + R AFV + A A+ L
Sbjct: 8 KIFVGNLALDTTQEELSCIFEPYGQVVSCSVL-------RQFAFVHLQGEGSAERAIREL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
EF GR L V ++ + P + +F+ NLS +DL++ F + G
Sbjct: 61 NGREFRGRNLVVEESRGR-----------PLHSTKVFVGNLSGMCTTEDLQQLFQTFG-- 107
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
+V+ D + GY FV ++K+ A AI A G F GRPL V S+ QT
Sbjct: 108 ----KVLECD---KVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTP 160
Query: 282 EG 283
G
Sbjct: 161 TG 162
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
V E R T++ N+ T ED++ LF+ G VL+ + + +G AFV M
Sbjct: 71 VVEESRGRPLHSTKVFVGNLSGMCTTEDLQQLFQTFGKVLECD-------KVKGYAFVHM 123
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
+ ++A A+ L F+GR L V +K++
Sbjct: 124 ENKEDALQAIEALHGTSFKGRPLSVELSKVQ 154
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + LF + G ++ L + + +G FV ++A A+
Sbjct: 108 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 167
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L E G L V A+ KKN V K + + NLF+ NL +
Sbjct: 168 LNDSELNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 225
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N +S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 226 KLEEEFAPYGT-ITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 283
Query: 270 A 270
A
Sbjct: 284 A 284
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
+ N+FI NL + K L + F G D++S+++ +N +S G+GFV F+ + A+
Sbjct: 13 GSGNIFIKNLHPDIDNKALYDTFSVFG-DILSSKIATDEN-GKSKGFGFVHFEEEGAAKE 70
Query: 253 AISAFQGKLFMGRPLRVAP 271
AI A G L G+ + VAP
Sbjct: 71 AIDALNGMLLNGQEIYVAP 89
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 16 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + +E F G
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEQFQELFAKFG-P 133
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+VSA + D + G+GFV+++ + A A+ A KL++GR
Sbjct: 134 IVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 182
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L I + +++G FV+ ++A A++++ E GR + V
Sbjct: 192 EKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVG 251
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 252 RAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFG-TITSA 310
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 311 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 353
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESY 164
Q +P +D F G +L I + R+ G A+V P +A AL+ +
Sbjct: 7 QTLPKREAQQD----FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 62
Query: 165 EFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
+GR L++ +++ ++P + N+FI NL K L + F + G +++S
Sbjct: 63 VIKGRPLRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILS 114
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+V+ +N S GYGFV F++ + AE AI G K+F+GR
Sbjct: 115 CKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGR 159
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G FV + + A A+ + R + V K +K
Sbjct: 106 FSAFGNILSCKV-VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 164
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N++I N + + L+E F G +S V+ D+ +S G+G
Sbjct: 165 ERE-AELGARAREFTNVYIKNFGEDMDDEKLKELFSKYG-PALSIRVM-TDDSGKSKGFG 221
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
FVSF+ + A+ A+ GK GR + V +++ Q +
Sbjct: 222 FVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNE 262
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E +R LF ++G + I + ++RG FV+ ++A A++ + E G+ + V
Sbjct: 205 EKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFG-TITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 22/164 (13%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H+D+ L+E+ G +L I + R+ G A+V P +A AL+ + +
Sbjct: 19 HQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G+ +++ +++ ++P + N+FI NL K L + F + G +++S +V
Sbjct: 79 GQPVRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+ +N S GYGFV F++++ AE AI G K+F+GR
Sbjct: 131 VCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 9/170 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G FV + + A A+ + R +
Sbjct: 111 DNKALYDTFSAFGNILSCKV-VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E + LRE F G + +S V+ +
Sbjct: 170 VGRFKSRKEREAELGARAKEFT--NVYIKNFGDEMDDEKLRELFSKYG-NAMSIRVMTDE 226
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
N + S G+GFVSF+ + A+ A+ GK G+ + V +++ QT+
Sbjct: 227 NGK-SRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTE 275
>gi|313244755|emb|CBY15469.1| unnamed protein product [Oikopleura dioica]
Length = 2588
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 117 IRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV-- 173
IR FE G V I++S NR++G F+ P+ A AL +++S GR +KV
Sbjct: 2235 IRQSFETFGPVRSIDMSYDQGTNRHKGFCFLEFECPEAAFLALEHMQSITIGGRAVKVGR 2294
Query: 174 --NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
N ++ ++ + ++IAN+ D++ F S G V+S +++ +
Sbjct: 2295 LSNIGQVAAQHFIAQFGNEAAKYHRVYIANIHVNIVDTDIKAVFESFGR-VLSCQLVKNV 2353
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
+ R YGFV + + + + AISA G G+ +RV P
Sbjct: 2354 DTGRHKNYGFVEYDNSQSMKEAISAMNGFDLGGQCIRVGPC 2394
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E + LF + G + + + + +++G FV +P++A A+ + YE G K+
Sbjct: 213 EALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLY 272
Query: 175 YAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223
+ +KKN + + + NL++ NL L++ F + G +
Sbjct: 273 VCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-KIT 331
Query: 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
SA+V+ DN RS G+GFV F+ A A++ GK+ +PL VA +++
Sbjct: 332 SAKVMCDDNG-RSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQR 381
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + + R+ G A+V P +A AL+ + G+ +++ +++
Sbjct: 38 FSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDMMYGKPIRIMWSQ-- 95
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K + + F G +++S +V +D S GY
Sbjct: 96 -RDP----SMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCKVA-NDEELNSKGY 148
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR-QFARLQ 279
GFV F++++ A+ AI G L G+ + V + + ARL+
Sbjct: 149 GFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLR 189
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + Y L +N+ T + ++ FE +G + ++ R++G FV PD
Sbjct: 296 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 355
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 356 EATKAVTEMNGKMMCTKPLYVALAQRKE 383
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N ++++ LF Q G L +++ +++G FV+ ++A A+
Sbjct: 182 TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 241
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E G+ + V A+ K K F ++ + + + NL+I NL + L
Sbjct: 242 MNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 301
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F G + SA+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 302 RKEFSPFG-SITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 357
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++ + +N ++G AFV + + A A+ + R +
Sbjct: 102 DNKALYDTFSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 160
Query: 173 VNYAKIKKKNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231
V K +K+ + K F N++I N E +L+E F S+ +S +V+ D
Sbjct: 161 VGRFKSRKEREAELGAKAKEFT--NVYIKNFGEEVDDDNLKELF-SQFGKTLSVKVM-RD 216
Query: 232 NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+S G+GFVS++ + A A+ GK G+ + V
Sbjct: 217 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVG 255
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 276 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 334
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 335 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 364
>gi|410928269|ref|XP_003977523.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Takifugu rubripes]
Length = 334
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDE 153
E+E ++T L+ +P + + E++R+LF G V +L + G FV +P +
Sbjct: 25 EDEDARTNLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSD 84
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A+N L + +TLKV+YA+ P + A NL+I+ L A +DL +
Sbjct: 85 AVRAINTLNGLRLQSKTLKVSYAR-------PSSEMIKDA--NLYISGLPRTASQQDLED 135
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F G ++++ V+ S G F+ F + AE AI G
Sbjct: 136 MFSHYG-RIINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKHLNG 180
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
A NL + L ++LR F S G DV SA++I S GYGFV+F + A
Sbjct: 29 ARTNLIVNYLPQSMSQEELRSLFSSVG-DVESAKLIRDKVAGHSLGYGFVNFVNPSDAVR 87
Query: 253 AISAFQGKLFMGRPLRVAPSR 273
AI+ G + L+V+ +R
Sbjct: 88 AINTLNGLRLQSKTLKVSYAR 108
>gi|328768982|gb|EGF79027.1| hypothetical protein BATDEDRAFT_12759 [Batrachochytrium
dendrobatidis JAM81]
Length = 820
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 24/217 (11%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATA 156
YSK+ L +P+T+ +D+ F Q G V ++ + G +V ++A
Sbjct: 64 YSKSTLFVSTLPFTAKADDLEEFFSQIGPVRSCFIAKQKLTGLSSGCGYVHFALAEDAQR 123
Query: 157 ALNNLESYEF-EGRTLKVNYAKIKKKNPFPPVQPKPFATFN-------------LFIANL 202
AL L+ +F GRTLK+ A ++K KP AT L I NL
Sbjct: 124 ALVELKKQKFMGGRTLKMKIA-LRKSIVVQRKSGKPRATIKSVIEPTKAKQRARLIIRNL 182
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
SF + ++L+ F + G +V + H + ++ G+GFV F++ A+ A+ A G
Sbjct: 183 SFNCKPENLQNVFSAFG--IVKDCSVPHLDDGKARGFGFVEFETMDCAQRALQAVNGTKI 240
Query: 263 MGRPLRV------APSRQFARLQTKEGLHSDETSDDL 293
+ RP+ V A + + L T EG S + D +
Sbjct: 241 LNRPVAVDWALAKATFDRLSALPTAEGEDSSDNEDQV 277
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 14/194 (7%)
Query: 89 VNTEQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
V + RE S + + +N+ T T ++++ +F ++GT+ + S ++R F
Sbjct: 199 VRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGF 258
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF-------PPVQ--PKPFATFN 196
V + D A A+ L F + L V A+ K + VQ + F N
Sbjct: 259 VNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTN 318
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LRE F +E ++ S +V+ D+ S G GFV+FKS + A A++
Sbjct: 319 LYLKNLEENIDDEKLRELF-AEYGNITSCKVM-RDSNGVSRGSGFVAFKSAEDANRALTE 376
Query: 257 FQGKLFMGRPLRVA 270
GK+ +PL VA
Sbjct: 377 MNGKMVGSKPLYVA 390
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 116 DIRALFE---QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL++ G +L +++ +RG FV + A +A++ L + +
Sbjct: 135 DNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVF 194
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNL-----FIANLSFEARAKDLREFFISEGWDVVSAEV 227
V PF Q + + N+ ++ NLS +L+E F + +++ V
Sbjct: 195 VG--------PFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGK--YGTITSAV 244
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ D+ +S +GFV+F++ A A+ GK+F + L V
Sbjct: 245 VMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVG 287
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E +R LF ++G + I + ++RG FV+ ++A A++ + E G+ + V
Sbjct: 205 EKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFG-TITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 22/164 (13%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H+D+ L+E+ G +L I + R+ G A+V P +A AL+ + +
Sbjct: 19 HQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G+ +++ +++ ++P + N+FI NL K L + F + G +++S +V
Sbjct: 79 GQPVRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+ +N S GYGFV F++++ AE AI G K+F+GR
Sbjct: 131 VCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G FV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + LRE F G + +S V+ +N + S G+
Sbjct: 178 EREAELGARAKEFT--NVYIKNFGDEMDDEKLRELFSKYG-NAMSIRVMTDENGK-SRGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
GFVSF+ + A+ A+ GK G+ + V +++ QT+
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTE 275
>gi|189237575|ref|XP_974855.2| PREDICTED: similar to splicing factor [Tribolium castaneum]
Length = 501
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 12/202 (5%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDE 153
EE ++T V Q + D+ F G V D+ L + +K R +G+A++ P+
Sbjct: 138 EERDARTVFVMQ-LSQRIRARDLEEFFSSVGKVRDVRLIVCNKTRRFKGIAYIEFKDPES 196
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKK---NPFPPVQPKPF-ATFNLFIANLSFEARAK 209
T AL L + G + V + + +K N P + PK L++ +L F
Sbjct: 197 VTLALG-LSGQKLLGVPIIVQHTQAEKNRMGNSMPNLMPKNMTGPMRLYVGSLHFNITED 255
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LR F G + + ++I RS GYGF++F++ + A+ A+ G GRP++V
Sbjct: 256 MLRSIFEPFG-KIDNIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQLNGFELAGRPMKV 314
Query: 270 APSRQFARLQTKEG---LHSDE 288
+ LQ ++G L SDE
Sbjct: 315 GNVTERLDLQ-QQGPSILDSDE 335
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA 237
++ +P + P+ +F+ LS RA+DL EFF S G V +I + RR
Sbjct: 126 LRSNSPVEELSPEERDARTVFVMQLSQRIRARDLEEFFSSVG-KVRDVRLIVCNKTRRFK 184
Query: 238 GYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G ++ FK + A+ G+ +G P+ V
Sbjct: 185 GIAYIEFKDPESVTLAL-GLSGQKLLGVPIIV 215
>gi|91088839|ref|XP_970745.1| PREDICTED: similar to lark CG8597-PA [Tribolium castaneum]
gi|270012337|gb|EFA08785.1| hypothetical protein TcasGA2_TC006476 [Tribolium castaneum]
Length = 358
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ N+ + D+R LFE++G V++ ++ KN FV M + E A+ NL
Sbjct: 11 KIFIGNLAEKTAVTDLRPLFEKYGKVVECDVV---KN----YGFVHMENESEGREAIQNL 63
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
+ G+ +K AK +K P P T +F+ NL+ +A +RE F G
Sbjct: 64 NGHMLNGQPMKCEAAKSRKA----PQTP----TTKIFVGNLTDNTKAPQIRELFKKYGT- 114
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ + YGFV +S AI G L G+P++V S +R++ +
Sbjct: 115 VVECDIVRN--------YGFVHLESSGDVNEAIKELNGTLVDGQPMKVQVS--TSRVRQR 164
Query: 282 EGLHSDE 288
G+ E
Sbjct: 165 PGMGDPE 171
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
TF +FI NL+ + DLR F G VV +V+ + YGFV +++
Sbjct: 8 GTFKIFIGNLAEKTAVTDLRPLFEKYG-KVVECDVVKN--------YGFVHMENESEGRE 58
Query: 253 AISAFQGKLFMGRPLRVAPSRQFARLQT 280
AI G + G+P++ ++ QT
Sbjct: 59 AIQNLNGHMLNGQPMKCEAAKSRKAPQT 86
>gi|406886422|gb|EKD33455.1| hypothetical protein ACD_76C00026G0004 [uncultured bacterium]
Length = 83
Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ N+S++A DL + F G +VVSA+++ RS G+GFV + ++AE AI A
Sbjct: 5 LFVGNISWDATDSDLSKLFAEVG-EVVSAQIVMDKLTGRSRGFGFVEMATDELAEAAIKA 63
Query: 257 FQGKLFMGRPLRVAPSR 273
GK F+GRP+ V +R
Sbjct: 64 LDGKDFLGRPITVNVAR 80
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + ++ LF Q G +L +++ S +RG FV + +EA A+ +
Sbjct: 191 TNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVH 250
Query: 161 LESYEFEGRTLKVNYA--KIKKKNPFPPV-------QPKPFATFNLFIANLSFEARAKDL 211
+ E GR L V A +++++N + + NL++ NL + L
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F G + SA+V+ S G+GFV F S + A A++ G++ +PL VA
Sbjct: 311 RKEFSPYGM-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L +++ ++ +RG FV + + A A+N + +
Sbjct: 111 DNKALYDTFSTFGNILSCKVAC-DEHGSRGFGFVHFETHEAAQHAINTMNGMLLNDHKVF 169
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + K +++ + + N+++ NL + + L+E F S+ ++S +V+ D+
Sbjct: 170 VGHFKSRREREVE-LGARAMEFTNIYVKNLQADVDEQGLQELF-SQFGKMLSVKVM-RDS 226
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
S G+GFV+F++ + A+ A+ GK GR L V
Sbjct: 227 SGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVG 264
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T + R +FE+ G + L ++ ++RG FV + +EA A+N
Sbjct: 334 TNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNE 393
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQP---------KPFATFNLFIANLSFEARAKDL 211
+ E +G+ L V A+ K + + +A NL++ NL + L
Sbjct: 394 MHEKEIKGKVLFVGRAQKKSERQSELARSHEAAKQERQNKYAGVNLYVKNLDDDVDDDKL 453
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA- 270
R F E + +++ + + S G+GFV F + A A++ K+ +PL V+
Sbjct: 454 RAEF--EAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVSL 511
Query: 271 PSRQFARLQTKEG 283
R+ R Q EG
Sbjct: 512 AQRRDVRRQQLEG 524
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R+ +Y+ L +N+ + +RA FE GT+ ++ + ++ ++G FV +P
Sbjct: 428 QERQNKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGFVCFSTP 487
Query: 152 DEATAALNNLESYEFEGRTLKVNYAK 177
DEAT A+ + + + L V+ A+
Sbjct: 488 DEATKAVTEMNNKMIGTKPLYVSLAQ 513
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 14/194 (7%)
Query: 89 VNTEQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
V + RE S + + +N+ T T ++++ +F ++GT+ + S ++R F
Sbjct: 199 VRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGF 258
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPF-------PPVQ--PKPFATFN 196
V + D A A+ L F + L V A+ K + VQ + F N
Sbjct: 259 VNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTN 318
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LRE F +E ++ S +V+ D+ S G GFV+FKS + A A++
Sbjct: 319 LYLKNLEENIDDEKLRELF-AEYGNITSCKVM-RDSNGVSRGSGFVAFKSAEDANRALTE 376
Query: 257 FQGKLFMGRPLRVA 270
GK+ +PL VA
Sbjct: 377 MNGKMVGSKPLYVA 390
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 116 DIRALFE---QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL++ G +L +++ +RG FV + A +A++ L + +
Sbjct: 135 DNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVF 194
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNL-----FIANLSFEARAKDLREFFISEGWDVVSAEV 227
V PF Q + + N+ ++ NLS +L+E F + +++ V
Sbjct: 195 VG--------PFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGK--YGTITSAV 244
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ D+ +S +GFV+F++ A A+ GK+F + L V
Sbjct: 245 VMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVG 287
>gi|428309319|ref|YP_007120296.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428250931|gb|AFZ16890.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 101
Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSPDEATAALNNLESYE 165
N+ + T EDIR +F ++GTV ++ L + R RG AFV MG+ +E TAA+ L+ E
Sbjct: 7 NLSYDVTEEDIREVFAEYGTVNNVTLPKDRETGRKRGFAFVEMGTDEEETAAIEALDGAE 66
Query: 166 FEGRTLKVNYAKIKKKN-PF 184
+ GR LKVN AK ++ N PF
Sbjct: 67 WMGRNLKVNKAKPREDNKPF 86
Score = 37.7 bits (86), Expect = 5.9, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR-RSAGYGFVSFKSKKVAETAI 254
++++ NLS++ +D+RE F G V+ + D R G+ FV + + AI
Sbjct: 2 SIYVGNLSYDVTEEDIREVFAEYG--TVNNVTLPKDRETGRKRGFAFVEMGTDEEETAAI 59
Query: 255 SAFQGKLFMGRPLRVAPSR 273
A G +MGR L+V ++
Sbjct: 60 EALDGAEWMGRNLKVNKAK 78
>gi|448520030|ref|XP_003868205.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis Co 90-125]
gi|380352544|emb|CCG22770.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis]
Length = 498
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNL 161
+ A + W + ++ FE V+ + M + ++RG +V S A A+ +
Sbjct: 257 IFAGRLSWNIDDDWLKREFEHLEGVISARVIMERATGKSRGYGYVDFSSKSAAENAIAEM 316
Query: 162 ESYEFEGRTLKVNYAKIK---------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLR 212
+ E +GR + ++ + K + F Q P T LFI NLSF A L
Sbjct: 317 QGKEIDGRPINLDLSTGKPHATKSNNDRARQFGDQQSPPSDT--LFIGNLSFNANRDKLF 374
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E F G +V+S + H + ++ G+G+V F S A+ A+ A G+ GRP R+
Sbjct: 375 EVFGEYG-NVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYLEGRPCRL 430
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNL 161
L N+ + + + + +F ++G V+ L H + +G +V S DEA AAL L
Sbjct: 359 LFIGNLSFNANRDKLFEVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 418
Query: 162 ESYEFEGRTLKVNYA 176
EGR +++++
Sbjct: 419 NGEYLEGRPCRLDFS 433
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N T ++ A+FE +G + + S+ +++G F+ + D A A+
Sbjct: 232 TNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEE 291
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + + + NLF+ NL ++ L
Sbjct: 292 LNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEML 351
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D +S G+GFV F + + A AI+ ++ +G+PL VA
Sbjct: 352 EEEFKPFGT-ITSAKVMV-DETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVA 408
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + T E + F+ GT+ ++ + +++G FV +P+EAT
Sbjct: 331 KYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATK 390
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + G+ L V A+ K
Sbjct: 391 AITEMNQRMVLGKPLYVALAQRK 413
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
Length = 249
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 110 WTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W+ E ++ FE G V+ + +R+RG +V + A A+ ++ E +G
Sbjct: 12 WSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDG 71
Query: 169 RTLKVNYAKIK------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
R + + + K + F +P T LF+ NLSF A + E F G +V
Sbjct: 72 RPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT--LFLGNLSFNADRDAIFELFAKHG-EV 128
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
VS + H + G+G+V F + + A+ A+ A QG+ RP+R+
Sbjct: 129 VSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRL 175
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+F+ LS+ + L++ F G V+ A VI+ RS GYG+V F++K AE AI
Sbjct: 5 IFVGRLSWSIDDEWLKKEFEHIG-GVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 63
Query: 257 FQGKLFMGRPL 267
QGK GRP+
Sbjct: 64 MQGKEIDGRPI 74
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + LF Q G ++ L + + +G FV + ++A A+
Sbjct: 108 TNLYVKNINSETTDEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEA 167
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L + G L V A+ KKN V K + + NLF+ NL +
Sbjct: 168 LNESDLNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 225
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N +S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 226 KLEEEFTPYGT-ITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 283
Query: 270 A 270
A
Sbjct: 284 A 284
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
+ N+FI NL + K L + F G D++S+++ +N +S G+GFV F+ + A+
Sbjct: 13 GSGNIFIKNLHPDIDNKALYDTFSVFG-DILSSKIATDEN-GKSKGFGFVHFEEEGAAKE 70
Query: 253 AISAFQGKLFMGRPLRVAP 271
AI A G L G+ + VAP
Sbjct: 71 AIDALNGMLLNGQEIYVAP 89
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 16 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + ++ FI G
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEQFQDLFIQFG-P 133
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ------GKLFMGR 265
+VSA + D + G+GFV++++ + A A+ A KL++GR
Sbjct: 134 IVSAS-LEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGR 182
>gi|340503643|gb|EGR30188.1| rbd protein, putative [Ichthyophthirius multifiliis]
Length = 379
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 15/193 (7%)
Query: 89 VNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++ ++R E SK ++ +N+P+ + + LFE+ G V + +S NR + V
Sbjct: 92 LDNDRRTNERSKNIILVKNLPFKIQEDGLSELFERFGFVTRLLISP-----NRSIGIVQF 146
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYA--------KIKKKNPFPPVQPKPFATFNLFIA 200
S + A A L + + L + +A +++K A ++I
Sbjct: 147 ESEEHAQNAFEKLSYFSLKNCPLYLEWAPIGLLKTEEVEKHQKIQEEIDDELARV-VYIK 205
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL F + +L+EFF + + A I N S GYGFV +K+ + I Q
Sbjct: 206 NLDFSVQETELKEFFEKQNLGEIKAVKIIKKN-NNSQGYGFVEYKNSSAVQECIKRLQNS 264
Query: 261 LFMGRPLRVAPSR 273
LF GR L ++ S+
Sbjct: 265 LFQGRCLHLSVSK 277
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++V +N+ + + +++R L + G V + L ++RG AFV + EA A
Sbjct: 301 NKIVIRNLAFETDKKEVRELIKGFGEVKSVRLPKKMNGQHRGFAFVEFTTTQEAKNAFTA 360
Query: 161 LESYEFEGRTLKVNYAKIK 179
LE+ F GR L + +AK++
Sbjct: 361 LENTHFYGRKLVIEWAKLE 379
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 106 QNVPWTSTHEDIRALFEQH--GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES 163
+N+ ++ +++ FE+ G + +++ + N ++G FV + + L++
Sbjct: 205 KNLDFSVQETELKEFFEKQNLGEIKAVKI-IKKNNNSQGYGFVEYKNSSAVQECIKRLQN 263
Query: 164 YEFEGRTLKVNYAKIKKKNP------------FPPVQPKPFATFNLFIANLSFEARAKDL 211
F+GR L ++ +K K++ P+ K + I NL+FE K++
Sbjct: 264 SLFQGRCLHLSVSKGKQQQEDNKGKQKKGKNNNIPISNK------IVIRNLAFETDKKEV 317
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
RE +G+ V + + + G+ FV F + + A+ A +A + F GR L +
Sbjct: 318 RELI--KGFGEVKSVRLPKKMNGQHRGFAFVEFTTTQEAKNAFTALENTHFYGRKLVI-- 373
Query: 272 SRQFARLQ 279
++A+L+
Sbjct: 374 --EWAKLE 379
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 90 NTEQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ ++ +R+RG +V
Sbjct: 129 NKKQKNEESGEPATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVD 188
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIAN 201
+ A A+ ++ E +GR + + + K + K F + LF+ N
Sbjct: 189 FENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDRAKKFGDTPSEPSDTLFLGN 248
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
LSF A + E F G +VVS + H + G+G+V F S + ++ A+ + QG+
Sbjct: 249 LSFNADRDTIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEY 307
Query: 262 FMGRPLRV 269
RP+R+
Sbjct: 308 IDNRPVRL 315
>gi|242007024|ref|XP_002424342.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
gi|212507742|gb|EEB11604.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
Length = 326
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ N+ +T DI+ LFE++G V++ ++ + FV M D A+ NL
Sbjct: 11 KIFVGNLSDKTTKADIQPLFEKYGKVVECDIV-------KNYGFVHMEHEDSGRDAIQNL 63
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
+ Y G ++KV A +K P P T +F+ NL+ +A +R F G
Sbjct: 64 DGYLVHGSSIKVE-AATSRKGPQTP-------TTKVFVGNLTDNTKAPQVRALFAKYGT- 114
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ + YGFV +S I G + G+P++V S +R++ +
Sbjct: 115 VVECDIVRN--------YGFVHIESSDNVNECIRELNGYILDGQPMKVQLS--TSRVRQR 164
Query: 282 EGLHSDE 288
G+ E
Sbjct: 165 PGMGDPE 171
>gi|410928271|ref|XP_003977524.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDE 153
E+E ++T L+ +P + + E++R+LF G V +L + G FV +P +
Sbjct: 49 EDEDARTNLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSD 108
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLRE 213
A A+N L + +TLKV+YA+ P + A NL+I+ L A +DL +
Sbjct: 109 AVRAINTLNGLRLQSKTLKVSYAR-------PSSEMIKDA--NLYISGLPRTASQQDLED 159
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
F G ++++ V+ S G F+ F + AE AI G
Sbjct: 160 MFSHYG-RIINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKHLNG 204
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
A NL + L ++LR F S G DV SA++I S GYGFV+F + A
Sbjct: 53 ARTNLIVNYLPQSMSQEELRSLFSSVG-DVESAKLIRDKVAGHSLGYGFVNFVNPSDAVR 111
Query: 253 AISAFQGKLFMGRPLRVAPSR 273
AI+ G + L+V+ +R
Sbjct: 112 AINTLNGLRLQSKTLKVSYAR 132
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
+ +R +F + G L +++ M + R++G FV +EA A+ ++ E GR L V
Sbjct: 205 DRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVG 264
Query: 175 YAK--------IKKK-NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ +K+K + + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYG-TITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMTEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N +RG FV + + AT A+ + R + V + K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRK 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ V + N++I N + LRE F S +S +V+ DN RS G+G
Sbjct: 178 EREAE-VGARAIEFTNVYIKNFGDDMDDDRLREIF-SRFGKTLSVKVMM-DNNGRSKGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV+F+ + A+ A++ GK GR L V
Sbjct: 235 FVNFEKHEEAQKAVADMNGKEINGRLLYVG 264
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 121 FEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G ++ I + + R+ G A++ P +A AL+ + +GR +++ +++
Sbjct: 31 FSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N R GY
Sbjct: 89 -RDP----GLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-NILSCKVVCDENGSR--GY 140
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++ + A AI G L R + V
Sbjct: 141 GFVHFETHEAATRAIETMNGMLLNDRKVFVG 171
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ E +R F +GT+ ++ M R++G FV SP
Sbjct: 285 QERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKV-MTEGGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>gi|224068610|ref|XP_002302783.1| predicted protein [Populus trichocarpa]
gi|222844509|gb|EEE82056.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV---TMGSPDEATAA 157
+L +P T+T E+IR+LFE+HG+V+++ L + + + FV T D A A
Sbjct: 81 KLYIAPIPRTTTEENIRSLFEEHGSVVEVVLPRDKRTGQQQAYCFVKYATFEEADRAIRA 140
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
L+N + E KV YA +++ P L++ +++ A +++ E F
Sbjct: 141 LHNQHTIPGEVAPFKVRYADGERERPVARCSMVGGFVDKLYVGSINKLASKQEIEEIFSP 200
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
G V I D ++S G FV F + +A AI G L M
Sbjct: 201 YGH--VEDVYIARDELKQSRGCAFVKFAHRDMALAAIKGLNGTLTM 244
>gi|343429355|emb|CBQ72928.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1168
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 55 AYTFPITP--KKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTS 112
A T I+P ++ SP + S DP + + SA+A T +T+L+ N+P+
Sbjct: 56 ATTDTISPLQQQPSPLAANLS----DPLLANPSASAPTTGPLSASDPRTQLLVSNLPYRV 111
Query: 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
+D++ LF + GTVL ++S+ NR+RG V M + +A A + L + ++GRTL
Sbjct: 112 RWQDLKDLFRKAGTVLRADVSLSPDNRSRGYGTVLMATEHDAVKAADMLGGFTWQGRTLD 171
Query: 173 V 173
V
Sbjct: 172 V 172
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAA 157
Y+ L N+P+ +D++ LF G + ++++ R+RG V S ++A A
Sbjct: 431 YAGRVLFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNA 490
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKN 182
+ YE+ GRTLKV++ + +N
Sbjct: 491 VRLYHGYEYSGRTLKVHFDRFAAQN 515
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Query: 126 TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFP 185
T+ D M+S+N G + V G P A F G+ + PFP
Sbjct: 371 TINDPTAGMYSQNA--GGSSVPTGFPGAPAMAPWPAGPGSFGGQVTAS-----MQSQPFP 423
Query: 186 PVQPK-PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244
P +A LF+ NL F + +DL++ F + G ++ A+V + RS G+G V F
Sbjct: 424 SQVPTTSYAGRVLFVGNLPFHCQWQDLKDLFRAAG-NIQRADVAIGPD-GRSRGFGTVLF 481
Query: 245 KSKKVAETAISAFQGKLFMGRPLRV 269
S++ A+ A+ + G + GR L+V
Sbjct: 482 ASQEDAQNAVRLYHGYEYSGRTLKV 506
>gi|50408254|ref|XP_456766.1| DEHA2A10010p [Debaryomyces hansenii CBS767]
gi|49652430|emb|CAG84729.1| DEHA2A10010p [Debaryomyces hansenii CBS767]
Length = 463
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR- 139
VD++ A+AV + E S L + + + E ++ LF G + +++ ++ KNR
Sbjct: 81 VDTNPASAV---EGGREVSNKILYVGGLHKSVSDEMLKDLFAVAGAIQSVKI-LNDKNRP 136
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA----KIKKKNPFPPVQPKPFATF 195
AF+ + A AL+ L +K+N+A I NP P TF
Sbjct: 137 GFNYAFIEFENTQSADMALHTLNGRIINNSEIKINWAYQSSTISSLNPDEP-------TF 189
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+F+ +LS E + L + F S+ + A V++ RS GYGFVSF + AE A+
Sbjct: 190 NIFVGDLSPEVDDETLNKSF-SKFPSLKQAHVMWDMQTSRSRGYGFVSFGQQADAELALQ 248
Query: 256 AFQGKLFMGRPLRV 269
G+ GR +R
Sbjct: 249 TMNGEWISGRAIRC 262
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 12/192 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +NV T E+ LF ++G + L +++G FV + DEA A++
Sbjct: 226 TNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDE 285
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L +F+G+ L V A+ K + + + + A F NL++ N+ + L
Sbjct: 286 LHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERL 345
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA- 270
R+ F G +++ I S G+GFV + + + A A+S GK+ RPL VA
Sbjct: 346 RDEFAPFG--AITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVAL 403
Query: 271 PSRQFARLQTKE 282
R+ R Q E
Sbjct: 404 AQRKDVRRQQLE 415
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 4/154 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ S++ + G FV + + A AA+ ++ + + V + I +
Sbjct: 154 FAAFGNILSCKVAT-SESGSLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGH-HIPR 211
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
K ++ N++ N+ + ++ + F G +++ V+ D +S G+G
Sbjct: 212 KERQAKIEESRARFTNVYCKNVDADVTDEEFEKLFTKYGK--ITSCVLQRDEDGKSKGFG 269
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
FV+F++ A+TA+ F G+ L VA +++
Sbjct: 270 FVNFENHDEAQTAVDELHDSDFKGQKLFVARAQK 303
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 18/196 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V RE+E + T + +N+ +++ +F+++GT+ ++ +RG
Sbjct: 480 VGRNDREKELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGF 539
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAK--------IKKK-NPFPPVQPKPFA 193
FV P EA A+ L + EG+T VN A+ +K+K + + +
Sbjct: 540 GFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQ 599
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR F + G + SA+V+ D RS G+GFV F S + A A
Sbjct: 600 GVNLYVKNLDDTIDDERLRREFSAFG-TIKSAKVMMDDG--RSKGFGFVYFSSPEEATKA 656
Query: 254 ISAFQGKLFMGRPLRV 269
++ G++ +PL V
Sbjct: 657 VTDMNGRIVGTKPLYV 672
>gi|307185103|gb|EFN71298.1| RNA-binding motif, single-stranded-interacting protein 1
[Camponotus floridanus]
Length = 353
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 13 QQAEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 72
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV +++ + P NL+IANL + D+
Sbjct: 73 MAAEGAVKALVAKGIQAQMAKVGIWLLRRLDSQQEQDPT-----NLYIANLPLTFKENDV 127
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR--PLRV 269
E +++ V+S I D +S G GF +SK+ E I F GK G PL V
Sbjct: 128 -EALLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKALPGAKDPLLV 185
>gi|242782227|ref|XP_002479958.1| electron transfer flavoprotein-ubiquinone oxidoreductase
[Talaromyces stipitatus ATCC 10500]
gi|218720105|gb|EED19524.1| electron transfer flavoprotein-ubiquinone oxidoreductase
[Talaromyces stipitatus ATCC 10500]
Length = 1100
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HGT E+ + + G F+ +A
Sbjct: 798 EVSSTRLYLGNLPRNVTKKDIEEYFGSHGTGKITEIKLMN-----GFGFIEYEDAMDARD 852
Query: 157 ALNNLESYEFEGRTLKVNYAKI-KKKNPF-----PPVQPKPFAT-FNLFIANLSFEARAK 209
+ +F+G L V +A+ + K F P P+P T F + ++ L E +
Sbjct: 853 VVPAFHGSDFKGERLTVQFARGPRHKETFNGPSDRPAAPRPRRTVFRMQVSGLPTETSWQ 912
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
DL++F G DVV +E R G GFV F+S +TA+ G+ G
Sbjct: 913 DLKDFARQSGLDVVYSETT-----RERDGRGFVEFESHADLKTAVEKLDGRELKG 962
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL KD+ E+F S G ++ + + G+GF+ ++ A + A
Sbjct: 804 LYLGNLPRNVTKKDIEEYFGSHGTGKITEIKLMN-------GFGFIEYEDAMDARDVVPA 856
Query: 257 FQGKLFMGRPLRVAPSRQFAR 277
F G F G L V QFAR
Sbjct: 857 FHGSDFKGERLTV----QFAR 873
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E FI G +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELFIQFG-KTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
>gi|270007747|gb|EFA04195.1| hypothetical protein TcasGA2_TC014444 [Tribolium castaneum]
Length = 522
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 12/202 (5%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDE 153
EE ++T V Q + D+ F G V D+ L + +K R +G+A++ P+
Sbjct: 159 EERDARTVFVMQ-LSQRIRARDLEEFFSSVGKVRDVRLIVCNKTRRFKGIAYIEFKDPES 217
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIKKK---NPFPPVQPKPF-ATFNLFIANLSFEARAK 209
T AL L + G + V + + +K N P + PK L++ +L F
Sbjct: 218 VTLALG-LSGQKLLGVPIIVQHTQAEKNRMGNSMPNLMPKNMTGPMRLYVGSLHFNITED 276
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LR F G + + ++I RS GYGF++F++ + A+ A+ G GRP++V
Sbjct: 277 MLRSIFEPFG-KIDNIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQLNGFELAGRPMKV 335
Query: 270 APSRQFARLQTKEG---LHSDE 288
+ LQ ++G L SDE
Sbjct: 336 GNVTERLDLQ-QQGPSILDSDE 356
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA 237
++ +P + P+ +F+ LS RA+DL EFF S G V +I + RR
Sbjct: 147 LRSNSPVEELSPEERDARTVFVMQLSQRIRARDLEEFFSSVG-KVRDVRLIVCNKTRRFK 205
Query: 238 GYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
G ++ FK + A+ G+ +G P+ V
Sbjct: 206 GIAYIEFKDPESVTLAL-GLSGQKLLGVPIIV 236
>gi|18858615|ref|NP_571524.1| ELAV-like protein 3 [Danio rerio]
gi|1683635|gb|AAB36515.1| zHuC [Danio rerio]
Length = 345
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G ++++ ++ + S G GF+ F + AE AI G+ +PL A
Sbjct: 147 YG-RIITSRILVNQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPLGAA 194
>gi|171912058|ref|ZP_02927528.1| RNA-binding region RNP-1 [Verrucomicrobium spinosum DSM 4136]
Length = 150
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALN 159
T++ N+ W++T +D+R LF Q+G V ++ L + R RG AFV M + + AA+
Sbjct: 3 TKMYVGNLAWSATEQDVRELFSQYGAVTEVSLPTDRDTGRPRGFAFVAMDTKEAMDAAIK 62
Query: 160 NLESYEFEGRTLKVNYAKIKKKNP 183
L E+ GR L VN A+ +++ P
Sbjct: 63 GLNGLEWMGRALTVNEARPREERP 86
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+++ NL++ A +D+RE F G V + + R G+ FV+ +K+ + AI
Sbjct: 5 MYVGNLAWSATEQDVRELFSQYG-AVTEVSLPTDRDTGRPRGFAFVAMDTKEAMDAAIKG 63
Query: 257 FQGKLFMGRPLRVAPSR 273
G +MGR L V +R
Sbjct: 64 LNGLEWMGRALTVNEAR 80
>gi|397603997|gb|EJK58580.1| hypothetical protein THAOC_21281 [Thalassiosira oceanica]
Length = 375
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALN 159
TRL N+P+ T E + A + G V I+ ++ + G +FV + + +A +
Sbjct: 179 TRLFVGNLPFAVTEETLNAHMK--GCVTHIKWITDKETGKFYGSSFVEVRNSKDAAICVK 236
Query: 160 NLESYEFEGRTLKVNYAKIK--KKNPFPP------------------------VQPKPFA 193
+ + GR +K+NYA ++ ++ +PP ++ KP
Sbjct: 237 EINQTQLMGRPIKINYAPMRAGEEKDWPPRSKVITGGKVANSGGQAGGSGIKALKAKPDG 296
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
LF+ NLS+E + +FF ++ + +FH + G GF F + + E A
Sbjct: 297 CCKLFLGNLSYEIDDDGITKFFAGVDAELKAVRWLFHQDSGDFKGCGFADFWNTEACEKA 356
Query: 254 ISAFQGKLFMGRPLRV 269
S GK +GRP+R+
Sbjct: 357 AS-LNGKTLLGRPIRI 371
>gi|406883265|gb|EKD30895.1| hypothetical protein ACD_77C00459G0025 [uncultured bacterium]
Length = 87
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+F+++LSF A+ +DL E F G +V+SA +IF+ RRS GYGFV +++ AI+
Sbjct: 2 NIFVSSLSFRAKKEDLAELFAPYG-EVISARIIFNRETRRSKGYGFVEMPNEEEGNAAIA 60
Query: 256 AFQGKLFMGRPLRVA 270
A G MGR + VA
Sbjct: 61 ALNGSDHMGRTINVA 75
>gi|345493910|ref|XP_003427180.1| PREDICTED: protein alan shepard-like isoform 4 [Nasonia
vitripennis]
Length = 575
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 8/173 (4%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSP 151
Q+ E+ SKT L + + +T +D+ + Q+GT+ + + + N+ +G FV SP
Sbjct: 232 QQSEQLSKTNLYIRGLNQNTTDKDLVNMCSQYGTITSTKAILDKNTNKCKGYGFVDFESP 291
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
A A+ L + + + KV I++ P NL+IANL + D+
Sbjct: 292 VAAEGAVKALVAKGIQAQMAKVGIWLIRRLASQQEQDPT-----NLYIANLPLSFKENDV 346
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
E +++ V+S I D +S G GF +SK+ E I F GK G
Sbjct: 347 -EGLLAQYGQVISTR-ILRDTSGQSKGVGFARMESKEKCEQIIQMFNGKALHG 397
>gi|427786805|gb|JAA58854.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 402
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEA 154
++ SKT L + + T+T +D+ L +G ++ + + N+ +G FV SP A
Sbjct: 65 DQLSKTNLYIKGLTHTTTDKDLLNLCAPYGNIISTKAILDKDTNKCKGYGFVDFESPLAA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+ L++ + ++ AK ++++P NL++ANL +DL +
Sbjct: 125 EKAVKALQA-----QGVQAQMAKQQEQDPT-----------NLYMANLPLYMAEQDLEQL 168
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG--RPLRV 269
+ G V + I DN +S G GF +SK+ E I+ F GK+ G PL V
Sbjct: 169 LQAHG--AVISTRILRDNSAQSRGVGFARMESKEKCEQIIATFNGKVLPGSKEPLLV 223
>gi|17554332|ref|NP_497799.1| Protein MSI-1 [Caenorhabditis elegans]
gi|10047307|dbj|BAB13470.1| neural RNA-binding protein MSI-1 [Caenorhabditis elegans]
gi|18376536|emb|CAA84667.2| Protein MSI-1 [Caenorhabditis elegans]
Length = 320
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 15/179 (8%)
Query: 79 PFVDSSSAAAVNTEQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH 135
P VD A +N + + + ++ + W +T E++R F + G V + +
Sbjct: 20 PPVDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
Query: 136 -SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPP-VQPKPFA 193
+ R RG F+T P LNN E +E +G+ KI K FP Q K
Sbjct: 80 PATKRARGFGFITFVDPSSVDKVLNNRE-HELDGK-------KIDPKVAFPKRTQAKLVT 131
Query: 194 -TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
T +FI LS + +D++++F + G V A ++F +R G+GFV+F S +VA+
Sbjct: 132 KTKKVFIGGLSATSTLEDMKQYFETYG-KVEDAMLMFDKATQRHRGFGFVTFDSDEVAD 189
>gi|330914835|ref|XP_003296804.1| hypothetical protein PTT_06993 [Pyrenophora teres f. teres 0-1]
gi|311330893|gb|EFQ95099.1| hypothetical protein PTT_06993 [Pyrenophora teres f. teres 0-1]
Length = 326
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 30/183 (16%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ + T + ++ +F + G V +++ ++ +RG +V G+ +A AA++NL+
Sbjct: 138 LYIGNLYYEVTADQLKRVFSRFGEVESVKIVYDNRGLSRGFGYVEFGNLADAQAAIDNLD 197
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA--------------TFNLFIANLSFEARA 208
FEGR + V Y QPKP + + LFI N+SFE
Sbjct: 198 MQVFEGRNMVVQYH-----------QPKPNSMSRSSAGSFEANTPSKTLFIGNMSFEMSD 246
Query: 209 KDLREFF--ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266
KDL + F I DV A PR A F+ S A+ +S K+ GR
Sbjct: 247 KDLNDLFRDIRNVMDVRVAIDRRTGQPRGFAHADFIDVASATKAKEVLSE---KIIYGRQ 303
Query: 267 LRV 269
LR+
Sbjct: 304 LRI 306
>gi|440798125|gb|ELR19193.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1683
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 29/240 (12%)
Query: 45 FFPLSSSPFHAYTFPITPKKVSPFVFHFSATTQD-----PFVDSSSAAAVNTEQREEEYS 99
+ P+ +SP P+ SP + H + Q P+ S A + + EEY
Sbjct: 311 YSPMPTSP------PLPGGVQSPPLHHHGSVPQSSQVGAPWTSDSEAEGL---KEGEEYL 361
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE----LSMHSKNRNRGLAFVTMGSPDEAT 155
T L +N+ + T ED++ E H ++ ++ + G AFV S + A
Sbjct: 362 LTTLYIKNLAYQITDEDLKIKLESHECKEGLKAIRWITDKMQGHFTGEAFVEYESAELAA 421
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPV----------QPKPFATFNLFIANLSFE 205
AL+ L+ GR +K++YAK KKK P P + +PK +FIA L
Sbjct: 422 RALDKLKGRRMLGRRMKISYAKSKKKTPMPALTGEREVKEEKRPKYPGCKTIFIAKLDDG 481
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
L+E F G ++ +F N ++ G F+ + + + A++A+ G G+
Sbjct: 482 MTDATLKEIFGVFG-EIQRVHRLFDANTKKFKGCAFICYSAPEEADSAVRQMDGVRLFGK 540
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+RE K T + +N+ +T ++++ F Q+G++ + ++R FV
Sbjct: 213 EERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNF 272
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ---------PKPFATFNLFI 199
+P++A A+ L +F+ + V A+ K + + F NL++
Sbjct: 273 ENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYV 332
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + LRE F G +++ + D S G GFV+F + A ++ G
Sbjct: 333 KNLDDTVTDEKLRELFAEFG--TITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNG 390
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 391 KMVGGKPLYVA 401
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ + F GT++ +++ ++RG FV + D A A+ L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ + V ++K+ F N+++ NLS +L+ F G
Sbjct: 196 GKVLNDKQIFVG-PFLRKEERESAADKMKFT--NVYVKNLSEATTDDELKTTFGQYGS-- 250
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
+S+ V+ D +S +GFV+F++ + A A+ A GK F
Sbjct: 251 ISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKF 290
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 17/193 (8%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++REEE T + +N T E ++ +F G L + + + R+RG FV
Sbjct: 175 KEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFV 234
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQP---KPFATFNL 197
+A A++ + E G+ + V A+ + K F ++ + + NL
Sbjct: 235 NFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNL 294
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ D P+ S G+GFV F S + A A++
Sbjct: 295 YVKNLDDGIDDERLRKEFAPYGT-ITSAKVMT-DGPQ-SRGFGFVCFSSPEEATKAVTEM 351
Query: 258 QGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 352 NGRIVATKPLYVA 364
>gi|350633625|gb|EHA21990.1| hypothetical protein ASPNIDRAFT_56436 [Aspergillus niger ATCC 1015]
Length = 299
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ ++A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEY---EDAMD 54
Query: 157 ALNNL-ESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARA 208
A + + + +F+G L V +A+ ++K FP P P+P T F + ++ L E
Sbjct: 55 ARDVVPDGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTIFRMMVSGLP-ETSW 113
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+DL++F G DVV +E R G GFV F++ +TAI G+ F G
Sbjct: 114 QDLKDFARQSGLDVVYSETG------RELGRGFVEFETANDLKTAIEKLDGREFKG 163
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
+ RE SKT+ + +N+ ++T E++ F ++GT+ + + ++R FV
Sbjct: 200 QDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNF 259
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPV---QPKPFATFNLFI 199
+PD+A A+ L + + + V A+ K K F + NL++
Sbjct: 260 ENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYL 319
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + L+E F G +++ + D G GFV+F + + A A+ G
Sbjct: 320 KNLDDTISDEKLKEMFAEYG--TITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNG 377
Query: 260 KLFMGRPLRVAPSR----QFARLQTK 281
K+ G+PL VA ++ + ARLQ +
Sbjct: 378 KMIAGKPLYVALAQRKEDRRARLQAQ 403
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R+ G +V +P +A AL+ L R +++ Y+ ++P + T N+F
Sbjct: 72 RSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSH---RDP----SLRKSGTANIF 124
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I NL K L + F S G ++S + I D S GYGFV F S++ A+ AI
Sbjct: 125 IKNLDKAIDHKALHDTFSSFGL-ILSCK-IATDASGLSKGYGFVQFDSEESAQNAIDKLN 182
Query: 259 GKLFMGRPLRVAPSRQFARLQTKE 282
G L + + V F R Q +E
Sbjct: 183 GMLINDKQVYVG---HFLRKQDRE 203
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+RE K T + +N+ +T ++++ F Q+G++ + ++R FV
Sbjct: 213 EERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNF 272
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ---------PKPFATFNLFI 199
+P++A A+ L +F+ + V A+ K + + F NL++
Sbjct: 273 ENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYV 332
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + LRE F G +++ + D S G GFV+F + A ++ G
Sbjct: 333 KNLDDTVTDEKLRELFAEFG--TITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNG 390
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 391 KMVGGKPLYVA 401
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ + F GT++ +++ ++RG FV + D A A+ L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ + V ++K+ F N+++ NLS +L+ F G
Sbjct: 196 GKVLNDKQIFVG-PFLRKEERESAADKMKFT--NVYVKNLSEATTDDELKTTFGQYGS-- 250
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
+S+ V+ D +S +GFV+F++ + A A+ A GK F
Sbjct: 251 ISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKF 290
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T E+ + F + GTV + L + +G FV ++A A+
Sbjct: 228 TNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEE 287
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L EF+ + L V A+ K K + + + A + NLF+ NL + L
Sbjct: 288 LNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDDEKL 347
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F G ++ S +V+ +N + S G+GFV F S + A AI+ ++ G+PL VA
Sbjct: 348 QEEFAPFG-NITSVKVMRTENGK-SKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVA 404
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR- 141
+S+A++ + + + + + T L + + + + LF G+V I + + +
Sbjct: 29 ASTASSESQQAGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSL 88
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G A+V + A+ L +G+ ++ +++ P ++ K N+FI N
Sbjct: 89 GYAYVNFSDHEAGKQAIEKLNYTPIKGKLCRIMWSQRD-----PSLRKKGHG--NIFIKN 141
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L+ + K L + F G +++S++ I D +S G+GFV F+ + A AI A G L
Sbjct: 142 LNQDIDNKALFDTFSVFG-NILSSK-IATDETGKSKGFGFVHFEEESAANEAIDALNGML 199
Query: 262 FMGRPLRVAP 271
G+ + VAP
Sbjct: 200 LNGQEIYVAP 209
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 9/180 (5%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + ++DI +ALF+ G +L +++ +++G FV A A++ L
Sbjct: 136 NIFIKNLNQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDAL 195
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T N+++ N+ E ++ +EFF G
Sbjct: 196 NGMLLNGQEIYVAPHLTRKERDSQLEETKAHFT-NVYVKNIDLETTDEEFKEFFGKIG-- 252
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS-RQFARLQT 280
V++ + + G+GFV+++ A A+ G F + L V + +++ R+Q+
Sbjct: 253 TVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQS 312
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ + ++ F G ++ + ++ + ++G FV +PD+A A+
Sbjct: 191 TNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEA 250
Query: 161 LESYEFEGRTLKVNYAKIKKK------NPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ + + L V A+ K + + F Q + + N+++ N+ ++L
Sbjct: 251 MNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEEL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F + G +++ I D+ S G+GFV F + + A A++ F G ++ G+PL VA
Sbjct: 311 RDHFSACG--TITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVA 367
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 7/175 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+P + + ++ +F+++G +L ++ +++G FV S + + A+ L
Sbjct: 102 LFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLN 161
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWD 221
Y + L V K KK+ + P P A + NL++ NL + L+E F S G
Sbjct: 162 GYTVADKELYV--GKFVKKSD--RILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFG-K 216
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
+VS VI DN S G+GFV++ + A+ A+ A G + L VA +++ A
Sbjct: 217 IVSL-VIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKA 270
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 92 EQREE--EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
+Q+E+ +Y + + +N+ + E++R F GT+ ++ K ++G FV
Sbjct: 283 KQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFS 342
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
+P+EA A+N + + G+ L V A+ K+
Sbjct: 343 TPEEANKAVNTFHGFMYHGKPLYVALAQRKE 373
>gi|427786809|gb|JAA58856.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 365
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEA 154
++ SKT L + + T+T +D+ L +G ++ + + N+ +G FV SP A
Sbjct: 65 DQLSKTNLYIKGLTHTTTDKDLLNLCAPYGNIISTKAILDKDTNKCKGYGFVDFESPLAA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+ L++ + ++ AK ++++P NL++ANL +DL +
Sbjct: 125 EKAVKALQA-----QGVQAQMAKQQEQDPT-----------NLYMANLPLYMAEQDLEQL 168
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG--RPLRV 269
+ G V + I DN +S G GF +SK+ E I+ F GK+ G PL V
Sbjct: 169 LQAHG--AVISTRILRDNSAQSRGVGFARMESKEKCEQIIATFNGKVLPGSKEPLLV 223
>gi|190347835|gb|EDK40183.2| hypothetical protein PGUG_04281 [Meyerozyma guilliermondii ATCC
6260]
Length = 264
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P++ + ++++ L + G V+ ++ S ++RG V + +EA A+ + Y+
Sbjct: 78 NLPFSVSWQNLKDLMREAGNVIRADVKTDSWGKSRGFGTVIFSTEEEAAYAIEKFQGYDM 137
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFN----------------LFIANLSFEARAKD 210
GR + + + + P P + + N +F NL F D
Sbjct: 138 GGRRIDLRPGRGDNRPPPPAAEERRITGQNTEFTRNVVGNGERSNTIFATNLPFVTNVDD 197
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
L E F + G V AE+ F DN R +G V F S++ AE AI+ + GR L ++
Sbjct: 198 LYELFETIG-KVTRAEIQF-DNRGRPSGNAVVQFDSEEFAELAITNLNNYNYGGRELGIS 255
Query: 271 PSRQ 274
S++
Sbjct: 256 FSQK 259
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
+ A N+P+ + +D+ LFE G V E+ ++ R G A V S + A A+ NL
Sbjct: 184 IFATNLPFVTNVDDLYELFETIGKVTRAEIQFDNRGRPSGNAVVQFDSEEFAELAITNLN 243
Query: 163 SYEFEGRTLKVNYAK 177
+Y + GR L +++++
Sbjct: 244 NYNYGGRELGISFSQ 258
>gi|189241702|ref|XP_966757.2| PREDICTED: similar to hrp48.1 [Tribolium castaneum]
Length = 400
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAA 157
++T+L + W +T ++++ F ++G V+D + +++ R+RG FVT P
Sbjct: 13 NETKLFVGGLSWETTQDNLQRFFSRYGEVIDCVVMKNAESGRSRGFGFVTFSDPANVNTV 72
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFI 216
L N + +GRT+ K NP +PK + +F+ L DLR FF
Sbjct: 73 LQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYPKVFLGGLPSNVTETDLRTFFT 126
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
G V+ +++ ++S G+GF+SF+ ++ + +S
Sbjct: 127 RFG-KVMEVVIMYDQEKKKSRGFGFLSFEDEESVDRCVS 164
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L I + +++G FV+ ++A A++++ E GR + V
Sbjct: 205 EKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFG-TITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +GR L++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDEN--GSKGY 140
Query: 240 GFVSFKSKKVAETAISAFQG------KLFMGR 265
GFV F++ + AE AI G K+F+GR
Sbjct: 141 GFVHFETHEAAERAIEKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G FV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N++I N + + L+E F G +S V+ D +S G+G
Sbjct: 178 EREAE-LGARAREFTNVYIKNFGEDMDDEKLKELFSKYG-PALSIRVMTDDG-GKSKGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FVSF+ + A+ A+ GK GR + V
Sbjct: 235 FVSFERHEDAQKAVDDMNGKELNGRQVYVG 264
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++REEE L N+ + ED ++ +F G L + + + R+RG FV
Sbjct: 177 KEREEELGSKALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQP---KPFATFNL 197
++A A++ + E G+ + V A+ + K F ++ + + NL
Sbjct: 237 NFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + LR+ F G + SA+V+ D P+ S G+GFV F S + A A++
Sbjct: 297 YVKNLDDSIDDERLRKEFAPYG-TITSAKVM-TDGPQ-SRGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 354 NGRIVATKPLYVA 366
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R+ G A++ P +A AL+ + +GR +++ +++ ++P + N+F
Sbjct: 50 RSLGYAYINFQQPADAECALDTMNYDVIKGRPIRIMWSQ---RDP----GLRKSGVGNIF 102
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I N+ K L + F + G +++S +V+ + R S GYGFV F++++ A AI
Sbjct: 103 IKNMDESIDNKALYDTFSAFG-NILSCKVVCDE--RGSKGYGFVHFETEEAANRAIETMN 159
Query: 259 GKLFMGRPLRVA 270
G L R + V
Sbjct: 160 GMLLNDRKVFVG 171
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++G FV + + A A+ + R + V + K +K
Sbjct: 119 FSAFGNILSCKVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRK 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + K N++I N + + L+E F + G +S V+ D RS G+G
Sbjct: 178 ERE-EELGSKALKFTNIYIKNFGEDYNDEKLKEVFAAFGR-TLSVRVM-KDERGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV+F + A+ A+ GK G+ + V
Sbjct: 235 FVNFAHHEDAQKAVDEMNGKELNGKVIYVG 264
>gi|347734520|ref|ZP_08867565.1| ss-DNA binding protein 12RNP2 [Desulfovibrio sp. A2]
gi|347516846|gb|EGY24046.1| ss-DNA binding protein 12RNP2 [Desulfovibrio sp. A2]
Length = 88
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+P++++ ++IR LF QHG VL ++L S R RG FV M + D A++A+ L
Sbjct: 5 LYVGNLPFSASEDEIRDLFSQHGQVLSVKLISDRETGRPRGFGFVEMEAAD-ASSAVEAL 63
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPP 186
Y F GR LKVN A + + P PP
Sbjct: 64 NGYSFGGRALKVNEA--QPRAPRPP 86
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P + ++ LF Q G +L +++ S R+R FV +EA A+ +
Sbjct: 191 TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVH 250
Query: 161 LESYEFEGRTLKVNYA--KIKKKNP----FPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E GR L + A +++++N F ++ + + NL++ NL L
Sbjct: 251 MNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F G + SA+V+ + S G+GFV F S + A A++ G++ +PL VA
Sbjct: 311 RKEFSPYGV-ITSAKVMTEGS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A+N + R + V + K ++
Sbjct: 119 FSTFGNILSCKV-VCDEHGSRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N+++ NL + + L++ F S+ ++S +V+ D+ RS +G
Sbjct: 178 ERA-AELGARALEFTNIYVKNLPADVDEQGLQDLF-SQFGKMLSVKVM-RDSSGRSRCFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPL 267
FV+F+ + A+ A+ GK GR L
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLL 261
>gi|397521309|ref|XP_003830739.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan paniscus]
gi|397521311|ref|XP_003830740.1| PREDICTED: ELAV-like protein 2 isoform 3 [Pan paniscus]
gi|397521313|ref|XP_003830741.1| PREDICTED: ELAV-like protein 2 isoform 4 [Pan paniscus]
Length = 346
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
+++S ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNSCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 14/191 (7%)
Query: 92 EQREEEYSK---TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+RE K T + +N+ +T ++++ F Q+G++ + ++R FV
Sbjct: 208 EERESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNF 267
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQ---------PKPFATFNLFI 199
+P++A A+ L +F+ + V A+ K + + F NL++
Sbjct: 268 ENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYV 327
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL + LRE F G +++ + D S G GFV+F + A ++ G
Sbjct: 328 KNLDDTVTDEKLRELFAEFG--TITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNG 385
Query: 260 KLFMGRPLRVA 270
K+ G+PL VA
Sbjct: 386 KMVGGKPLYVA 396
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ + ++ + F GT++ +++ ++RG FV + D A A+ L
Sbjct: 131 LFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLN 190
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ + V ++K+ F N+++ NLS +L+ F G
Sbjct: 191 GKVLNDKQIFVG-PFLRKEERESAADKMKFT--NVYVKNLSEVTTDDELKTTFGQYGS-- 245
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
+S+ V+ D +S +GFV+F++ + A A+ A GK F
Sbjct: 246 ISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKF 285
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE E L N+ + H D+ + LF Q G +L +++ +RG FV
Sbjct: 178 EREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNP----FPPVQPKPFATF---NLF 198
++A A+ ++ E GR L V A +++++N F ++ + NL+
Sbjct: 238 FEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDSIDDEKLRKEFAPYGM-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVGTKPLYVA 366
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + + +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSTFGNILSCKV-VCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N+++ NL + + L++ F S+ ++S +V+ D+ S G+G
Sbjct: 178 ERE-AELGARALEFTNIYVKNLHVDVDERCLQDLF-SQFGKILSVKVM-RDDSGHSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV+F+ + A+ A++ GK GR L V
Sbjct: 235 FVNFEKHEDAQKAVTDMNGKEVSGRLLYVG 264
>gi|134083249|emb|CAK46820.1| unnamed protein product [Aspergillus niger]
Length = 367
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ ++A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEY---EDAMD 54
Query: 157 ALNNL-ESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARA 208
A + + + +F+G L V +A+ ++K FP P P+P T F + ++ L E
Sbjct: 55 ARDVVPDGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTIFRMMVSGLP-ETSW 113
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+DL++F G DVV +E R G GFV F++ +TAI G+ F G
Sbjct: 114 QDLKDFARQSGLDVVYSETG------RELGRGFVEFETANDLKTAIEKLDGREFKG 163
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE-------FE 167
+ IR LF+ G ++ ++ ++RG FV+ P+ A A++NL E +
Sbjct: 205 DKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYA 264
Query: 168 GRTLKVNYAKIKKKNPFPPVQPK---PFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
GR K + + K+ F ++ + + NL++ NL + LR+ F S+ + S
Sbjct: 265 GRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDERLRKEF-SQFGTITS 323
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
A V+ RS G+GFV F S + A A++ G++ + +PL VA
Sbjct: 324 ARVMSEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVA 367
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G VL I + R+ G A+V P +A AL+ + +GR +++ +++
Sbjct: 31 FSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDTIKGRPIRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S ++ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKIASDENG--SKGY 140
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
GFV F++++ A AI G L G+ + V
Sbjct: 141 GFVHFETEEAARQAIEKVNGMLLNGKKVYVG 171
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ E +R F Q GT+ + M R++G FV SP+
Sbjct: 287 ERINRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARV-MSEGGRSKGFGFVCFSSPE 345
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EAT A+ + + L V A+ K+
Sbjct: 346 EATKAVTEMNGRIIVSKPLYVALAQRKE 373
>gi|354545437|emb|CCE42165.1| hypothetical protein CPAR2_807140 [Candida parapsilosis]
Length = 420
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 7/196 (3%)
Query: 76 TQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH 135
TQD +S+ + + E S L N+P +++ E I LF + I+L ++
Sbjct: 29 TQDESKESTPVTPASATEGGRETSNKILYVGNLPKSASEEQISELFSVSKPIKSIKL-LN 87
Query: 136 SKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
KN+ AF+ EA AL+ L ++VN+A P T
Sbjct: 88 DKNKLGFNYAFIEFDDNQEADMALSTLNGKLLNNCEIRVNWAYQSATIASSSTPEDP--T 145
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVS-AEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
+NLF+ +LS E + L++ F +D A V++ RS GYGFV+F ++ AE A
Sbjct: 146 YNLFVGDLSSEVNDEALKKAF--NKFDSFKEAHVMWDMQTSRSRGYGFVTFSKQEDAELA 203
Query: 254 ISAFQGKLFMGRPLRV 269
+ G GR +R
Sbjct: 204 LQTMNGAWLGGRAIRC 219
>gi|432874359|ref|XP_004072458.1| PREDICTED: probable RNA-binding protein 19-like [Oryzias latipes]
Length = 921
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNN 160
RL +N+P+T T EDIR LF +HG + ++ + + + +G AFVT P+ A AL
Sbjct: 399 RLFVRNLPYTCTEEDIRELFSKHGPLSEVLFPIDNLTKKPKGFAFVTYMIPENAVTALAQ 458
Query: 161 LESYEFEGRTLKVNYAKIKKKNP 183
L+ + F+GR L + + +KK+NP
Sbjct: 459 LDRHVFQGRMLHLLPSTVKKENP 481
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 130 IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL---KVNYAKIKKKNPFPP 186
I + + + G +V + S +E AL + Y GR + KV+++ K K
Sbjct: 316 IRIGKNESGQRTGYVYVDLHSEEEVNKALKKNKDY-IGGRYIEVFKVDHSGGKAKKDPKD 374
Query: 187 VQP---------------KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF-H 230
+P T LF+ NL + +D+RE F G +EV+F
Sbjct: 375 KEPDFNFTRKLKEDEEEEDVSETGRLFVRNLPYTCTEEDIRELFSKHG---PLSEVLFPI 431
Query: 231 DN-PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
DN ++ G+ FV++ + A TA++ +F GR L + PS
Sbjct: 432 DNLTKKPKGFAFVTYMIPENAVTALAQLDRHVFQGRMLHLLPS 474
>gi|47220048|emb|CAG12196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 34 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 93
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 94 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 144
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 145 YG-RIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPLGAA 192
>gi|398018793|ref|XP_003862561.1| RNA-binding protein, putative [Leishmania donovani]
gi|322500791|emb|CBZ35868.1| RNA-binding protein, putative [Leishmania donovani]
Length = 639
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 17/173 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL--SMHSKNRNRGLAFVTMGSPDEATA 156
S+T L + + T +D+R LFEQ+GT++ L +H+ + G AFV + DEA A
Sbjct: 64 SQTNLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHT-GESLGTAFVRYSTHDEARA 122
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF- 215
A+ L+ E GR + + +A K+++ P LF+ N+ + A+ LR+ F
Sbjct: 123 AMAALDGRELYGRPISIQWA--KREHDSTPCGDARRKIHKLFVRNIPLDVTARHLRQIFS 180
Query: 216 -------ISEGWDVVSAEVIFHDNPRRSAG----YGFVSFKSKKVAETAISAF 257
++ D A + + R A F+ F+ VAE A+SA
Sbjct: 181 KFGSISNVTLHSDTAPAATRDNGDSSRPASQMRNIAFILFQDDDVAEQAVSAL 233
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 11/182 (6%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
+N E + SKT L+ +P T E+ ++LF G + +L ++ G
Sbjct: 17 GCVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 76
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 77 YGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSL 127
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
K++ + F S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 128 PKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 186
Query: 263 MG 264
+G
Sbjct: 187 LG 188
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + NV + ED +R +FE++G + ++ +++G FV
Sbjct: 178 KEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFV 237
Query: 147 TMGSPDEATAALNNLESYEF-EGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
P+ A A+ +L E EG+ L V A+ K K F ++ + + + N
Sbjct: 238 AFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVN 297
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ N+ + LR+ F G + SA+V+ D RS G+GFV F S + A A++
Sbjct: 298 LYVKNIDDNIDDERLRKEFTPFG-TITSAKVMLEDG--RSKGFGFVCFSSAEEATKAVTE 354
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 MNGRIVGSKPLYVA 368
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELS--MHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
H D+ LFE+ G VL I + M +K R+ G A+V P +A AL+ +
Sbjct: 19 HSDVTEAMLFEKFSSAGPVLSIRVCRDMITK-RSLGYAYVNFQQPADAERALDTMNYDPL 77
Query: 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAE 226
+G+ +++ +++ ++P + N+FI NL K + + F + G +++S +
Sbjct: 78 KGKPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFG-NILSCK 129
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
V D S GYGFV F++++ A +I G L G+
Sbjct: 130 VA-QDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 110 WTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168
W+ E ++ FE G V+ + +R+RG +V + + A A+ + E +G
Sbjct: 174 WSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKAVKEMHGKEIDG 233
Query: 169 RTLKVNYAKIK-------KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
R + + + K + F V +P T LF+ NLSF A ++ E F G +
Sbjct: 234 REINCDMSTSKPAAGNNDRAKKFGDVPSEPSET--LFLGNLSFNADRDNISEMFSKFG-E 290
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+VS + H + G+G+V + + + A+ A+ A QG+ RP+R+
Sbjct: 291 IVSVRIPTHPETEQPKGFGYVQYTNVEDAKKALDALQGEYIDNRPVRL 338
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+F+ LS+ + L+ F G V+ A VI+ RS GYG+V F++K+ AE A+
Sbjct: 167 IFVGRLSWSIDDEWLKNEFEHIG-GVIGARVIYERGTDRSRGYGYVDFENKEYAEKAVKE 225
Query: 257 FQGKLFMGRPL 267
GK GR +
Sbjct: 226 MHGKEIDGREI 236
>gi|398394106|ref|XP_003850512.1| hypothetical protein MYCGRDRAFT_46623 [Zymoseptoria tritici IPO323]
gi|339470390|gb|EGP85488.1| hypothetical protein MYCGRDRAFT_46623 [Zymoseptoria tritici IPO323]
Length = 343
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 8/206 (3%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEA 154
E+ ++ L N+ T + L Q G V+++ L +N +G FV GS D+A
Sbjct: 8 EQDKESTLYVGNLDERCTDALVWELMLQAGPVINVHLPRDRVTQNHQGYGFVEFGSEDDA 67
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A + G+ ++VN A K+ LF+ NL K L E
Sbjct: 68 DYACKIMNQIRVHGKPIRVNKASADKRAGGENGGLG-GVGAELFVGNLDSLVDEKVLYET 126
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
FI G +V+A I D+ S GYGFVS+ + ++ AI G+ M + + V Q
Sbjct: 127 FIRFG-QLVAAPKIARDDANLSKGYGFVSYAGFEASDAAIEHMHGQYLMNKEVTV----Q 181
Query: 275 FARLQTKEG-LHSDETSDDLNINAEE 299
+A + +G H DE L A++
Sbjct: 182 YAYKKDGKGERHGDEAERALAAQAKK 207
>gi|303321732|ref|XP_003070860.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110557|gb|EER28715.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320040347|gb|EFW22280.1| hypothetical protein CPSG_00179 [Coccidioides posadasii str.
Silveira]
Length = 498
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALN 159
+ L N+ W E +R+ FE G + + + + R+RG +V + ++A+ A
Sbjct: 264 SNLFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEFTNAEDASKAFK 323
Query: 160 NLESYEFEGRTLKVNYAKIKKK----NPFPPVQPKPFA------TFNLFIANLSFEARAK 209
+ E +GRT+ +++A ++ + K F + LFI N+SF A
Sbjct: 324 AKKDAEIDGRTINLDFANARQNAGGARDRAQSRAKSFGDQTSPESDTLFIGNISFNADEN 383
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++E F S G ++ + R G+G+V F S A +A +A QG GR +R+
Sbjct: 384 AVQETFSSHG-SILGIRLPTDPESGRPKGFGYVQFSSVDEARSAFNALQGTELAGRAMRL 442
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ + + ++ F HG++L I L R +G +V S DEA +A N L
Sbjct: 371 LFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQFSSVDEARSAFNAL 430
Query: 162 ESYEFEGRTLKVNYA 176
+ E GR ++++++
Sbjct: 431 QGTELAGRAMRLDFS 445
>gi|218885302|ref|YP_002434623.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|347730840|ref|ZP_08863950.1| RNA recognition motif family protein [Desulfovibrio sp. A2]
gi|218756256|gb|ACL07155.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|347520346|gb|EGY27481.1| RNA recognition motif family protein [Desulfovibrio sp. A2]
Length = 88
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
+L N+P++S+ D+RALF HG V + L M + R RG FV M D A AA+
Sbjct: 4 KLYVGNLPFSSSESDLRALFSNHGEVQSVALIMDRETGRPRGFGFVEM-DDDGARAAMEA 62
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
L+ +F+GR+LKVN A+ + P QP+
Sbjct: 63 LDGRDFQGRSLKVNEAQER-----APRQPR 87
>gi|409049562|gb|EKM59039.1| hypothetical protein PHACADRAFT_249208 [Phanerochaete carnosa
HHB-10118-sp]
Length = 292
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAA 157
+KT V + W + + + F Q G ++ + + R+RG FVT SP+ A
Sbjct: 38 TKTIFVGM-LSWNVDNAWLESEFAQCGEIVSAHVQTDRNTGRSRGFGFVTFASPEAVDKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA------TFNLFIANLSFEARAKDL 211
L L E +GR++ V+ + K +N + + F + LF+ NLSF+A + L
Sbjct: 97 LE-LNGKEIDGRSINVDKSVEKDQNQVRERRARTFGDAPSEPSSRLFVGNLSFDATEEQL 155
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E F G + S + + R G+G+V F+ + A+ A + G+ GR +R+
Sbjct: 156 WEVFSDYG-SIKSVHMPTSRDSGRPKGFGYVEFEDIESAKKAHESLVGQEIAGRAIRL 212
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
S D ++ L L EFEG ++ K + + P T +F+ LS+
Sbjct: 2 STDHESSHLKGLNYAEFEGEAVEP-AQKARVDDGSAP-------TKTIFVGMLSWNVDNA 53
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L F G ++VSA V N RS G+GFV+F S + + A+ GK GR + V
Sbjct: 54 WLESEFAQCG-EIVSAHVQTDRNTGRSRGFGFVTFASPEAVDKALE-LNGKEIDGRSINV 111
Query: 270 APSRQFARLQTKE 282
S + + Q +E
Sbjct: 112 DKSVEKDQNQVRE 124
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
+++S ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNSCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|189233813|ref|XP_971256.2| PREDICTED: similar to RNA-binding protein, putative [Tribolium
castaneum]
Length = 352
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL---------------SMHSKNRNR 141
E SKT L+ +P T T E+IR+LF G V +L S ++
Sbjct: 26 EESKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGMKLPGVITSPLLTGQSL 85
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G FV P++A A+N L + +T+KV+YA+ P + A NL+++
Sbjct: 86 GYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYAR-------PSSEAIKGA--NLYVSG 136
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L +DL F G ++++ ++ + S G GF+ F + AE AI G +
Sbjct: 137 LPKNMTQQDLESLFSPYG-RIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTI 195
Query: 262 FMG 264
G
Sbjct: 196 PKG 198
>gi|171909603|ref|ZP_02925073.1| RNA-binding region RNP-1 [Verrucomicrobium spinosum DSM 4136]
Length = 100
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALN 159
T++ N+PWT+T +D+R+LF HG V ++ + + R RG AFVTM S D A+
Sbjct: 3 TKMYVGNLPWTATEDDVRSLFSAHGEVREVNMPTDRTSGRPRGFAFVTMDSADAMQGAIR 62
Query: 160 NLESYEFEGRTLKVNYAKIKKKNP 183
L E+ R L+V+ A+ + P
Sbjct: 63 ALGGKEWMQRKLEVSEARPRTDRP 86
>gi|148235423|ref|NP_001081035.1| ELAV-like protein 2 [Xenopus laevis]
gi|288561905|sp|Q91903.2|ELAV2_XENLA RecName: Full=ELAV-like protein 2; AltName: Full=Elav like-1;
Short=Xel-1; AltName: Full=Protein ElrB; AltName:
Full=p45
gi|608539|gb|AAA96943.1| ribonucleoprotein [Xenopus laevis]
Length = 389
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKNRNRGLAFVTM 148
E E SKT L+ +P T E++++LF G + +L ++ ++ G FV
Sbjct: 56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNY 115
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
P +A A+N L + +T+KV+YA+ + NL+++ L
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQ 166
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
K+L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 167 KELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T ++ LF Q G + + L ++ RG FV + + A A++
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 161 LESYEFEGRTLKVNYA-----------------KIKKKNPFPPVQPKPFATFNLFIANLS 203
L E++G+ L V A K++K N + V NLFI NL
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV--------NLFIKNLQ 372
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
E + L+ F + G +++ I D +S G+GFV + + + A A++ ++
Sbjct: 373 DEVDDERLKAEFSAFG--TITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
Query: 264 GRPLRVA 270
G+PL VA
Sbjct: 431 GKPLYVA 437
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V I + + R+ G A+V + ++ AL+ L +GR ++ ++
Sbjct: 99 LFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS-- 156
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++P + T N+FI NL K L + F + G ++S +V D + G
Sbjct: 157 -QRDP----SLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG-KILSCKVAV-DELGNAKG 209
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
YGFV F S + A AI G L + + V
Sbjct: 210 YGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 10/160 (6%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++++ +G FV S + A AA+ ++ + +
Sbjct: 180 DNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVY 239
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF--H 230
V + + ++ V+ N++I NL E ++ + F G ++ S ++ +
Sbjct: 240 VGH-HVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG-EITSLSLVKDQN 297
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D PR G+GFV++ + + A+ A+ K + G+ L V
Sbjct: 298 DKPR---GFGFVNYANHECAQKAVDELNDKEYKGKKLYVG 334
>gi|119195917|ref|XP_001248562.1| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
gi|392862234|gb|EAS37139.2| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
Length = 496
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALN 159
+ L N+ W E +R+ FE G + + + + R+RG +V + ++A+ A
Sbjct: 262 SNLFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEFTNAEDASKAFK 321
Query: 160 NLESYEFEGRTLKVNYAKIKKK----NPFPPVQPKPFA------TFNLFIANLSFEARAK 209
+ E +GRT+ +++A ++ + K F + LFI N+SF A
Sbjct: 322 AKKDAEIDGRTINLDFANARQNAGGARDRAQSRAKSFGDQTSPESDTLFIGNISFNADEN 381
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
++E F S G ++ + R G+G+V F S A +A +A QG GR +R+
Sbjct: 382 AVQETFSSHG-SILGIRLPTDPESGRPKGFGYVQFSSVDEARSAFNALQGTELAGRAMRL 440
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ + + ++ F HG++L I L R +G +V S DEA +A N L
Sbjct: 369 LFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQFSSVDEARSAFNAL 428
Query: 162 ESYEFEGRTLKVNYA 176
+ E GR ++++++
Sbjct: 429 QGTELAGRAMRLDFS 443
>gi|429892774|gb|AGA18932.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 417
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAAL 158
+ +L + W +T E++ F + G ++D + + + R+RG FVT P L
Sbjct: 2 RGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVL 61
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N + +GRT+ K NP +PK + +F+ L DLR FF
Sbjct: 62 QN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRY 115
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
G V +++ ++S G+GF+SF+ + E
Sbjct: 116 G-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 147
>gi|442555271|ref|YP_007365096.1| RNA recognition domain-containing protein [Lawsonia intracellularis
N343]
gi|441492718|gb|AGC49412.1| RNA recognition domain-containing protein [Lawsonia intracellularis
N343]
Length = 88
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T E +++LF ++G V+ ++L S R RG FV M P ATAA+ L++
Sbjct: 9 NLPWSATEEQVQSLFSEYGHVMAVKLVSDRETGRARGFGFVEMEEPG-ATAAIEALDNAN 67
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPK 190
F GRTL+VN AK P P P+
Sbjct: 68 FGGRTLRVNEAK-----PRAPRAPR 87
>gi|395530250|ref|XP_003767210.1| PREDICTED: ELAV-like protein 4 [Sarcophilus harrisii]
Length = 707
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 11/189 (5%)
Query: 73 SATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL 132
S TT P +S + + + SKT L+ +P T E+ R+LF G + +L
Sbjct: 359 SNTTNGPSSNSRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 418
Query: 133 SMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKP 191
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 419 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS--------- 469
Query: 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 470 IRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAE 528
Query: 252 TAISAFQGK 260
AI G+
Sbjct: 529 EAIKGLNGQ 537
>gi|18463972|gb|AAL73053.1| HUC [Sphoeroides nephelus]
Length = 356
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 34 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 93
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 94 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 144
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 145 YG-RIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPLGAA 192
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 147 YG-RIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPLGAA 194
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T E+ LF ++G VL L + +G FV + ++A A+
Sbjct: 221 TNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEE 280
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L +F+ + L V+ A+ K K + + + A + NLFI NL + L
Sbjct: 281 LNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDEKL 340
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F G ++ S V+ +N + S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 341 KEEFAPYG-NITSVRVMRTENGK-SRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 397
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 120 LFEQHGTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
+F G+V I + + + G A+V + A+ L +GR ++ +++
Sbjct: 59 IFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIEKLNYTPIKGRLCRIMWSQR 118
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
P ++ K A N+FI NL + K L + F G +++S++ I D +S G
Sbjct: 119 D-----PALRKKGSA--NIFIKNLHSDIDNKALYDTFSVFG-NILSSK-IATDETGKSKG 169
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+GFV F+ A+ AI A G L G+ + V P
Sbjct: 170 FGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGP 202
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T ++ LF Q G + + L ++ RG FV + + A A++
Sbjct: 247 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 306
Query: 161 LESYEFEGRTLKVNYA-----------------KIKKKNPFPPVQPKPFATFNLFIANLS 203
L E++G+ L V A K++K N + V NLFI NL
Sbjct: 307 LNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGV--------NLFIKNLQ 358
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
E + L+ F + G +++ I D +S G+GFV + + + A A++ ++
Sbjct: 359 DEVDDERLKAEFSAFG--TITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 416
Query: 264 GRPLRVA 270
G+PL VA
Sbjct: 417 GKPLYVA 423
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V I + + R+ G A+V + ++ AL+ L +GR ++ ++
Sbjct: 85 LFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS-- 142
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++P + T N+FI NL K L + F + G ++S +V D + G
Sbjct: 143 -QRDP----SLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG-KILSCKVAV-DELGNAKG 195
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
YGFV F S + A AI G L + + V
Sbjct: 196 YGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 227
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++++ +G FV S + A AA+ ++ + +
Sbjct: 166 DNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVY 225
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF--H 230
V + + ++ V+ N++I NL E ++ + F G ++ S ++ +
Sbjct: 226 VGH-HVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG-EITSLSLVKDQN 283
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
D PR G+GFV++ + + A+ A+ K + G+ L V +++
Sbjct: 284 DKPR---GFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 324
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTLKVNY 175
++ +FE +G + + ++RG FV+ +PD A A+ L E G+ + V
Sbjct: 208 LKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGR 267
Query: 176 AKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSAE 226
A+ K K F ++ + + NL++ NL + LR F G + SA+
Sbjct: 268 AQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGT-ITSAK 326
Query: 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
V+ RS G+GFV F S + A A++ G++ + +PL VA
Sbjct: 327 VMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVA 370
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 121 FEQHGTVLDIELS--MHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F Q G VL I + M S+ R+ G A+V P +A AL+ + + R +++ +++
Sbjct: 31 FCQAGPVLSIRVCRDMISR-RSLGYAYVNFHQPGDAERALDTMNFEPLKNRPMRIMWSQ- 88
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL + K + + F + G +++S V D S G
Sbjct: 89 --RDP----SLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFG-NILSCRVA-TDEQGNSRG 140
Query: 239 YGFVSFKSKKVAETAISAFQGKLF 262
YGFV F++++ A AI+ G L
Sbjct: 141 YGFVHFETEEAANEAINKVNGMLL 164
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN-RNRGLAFVTMGSP 151
+R Y L +N+ E +R F +GT+ ++ M S R++G FV SP
Sbjct: 288 ERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSP 347
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EAT A+ + + L V A+ K+
Sbjct: 348 EEATKAVTEMNGRIIVQKPLYVALAQRKE 376
>gi|224112006|ref|XP_002316051.1| predicted protein [Populus trichocarpa]
gi|222865091|gb|EEF02222.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALN 159
+L +VP T+T DIR LFE+HG V+++ L + + +G F+ + +EA A+
Sbjct: 88 AKLFVGSVPRTATEMDIRPLFEEHGNVIEVALIKDKRTGQQQGCCFIKYATSEEADRAIR 147
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
L + RTL I+ + + + LF+ +L+ +A K++ E F G
Sbjct: 148 ALHNQ----RTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFTPYG 203
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
V + D ++S G GFV + + +A AI+ G
Sbjct: 204 R--VEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINGLNG 241
>gi|384489930|gb|EIE81152.1| hypothetical protein RO3G_05857 [Rhizopus delemar RA 99-880]
Length = 293
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 32/196 (16%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHS--KNRNRGLAFVTMGSPDEATAALNNLESY 164
N+ +++T E IR F G++ ++ + KN+N+G A++ + +E A+ E
Sbjct: 98 NLSYSTTVETIRNFFTDCGSITRVKCPKGNGVKNKNKGFAYIFFATTEEQAKAIAKSEQ- 156
Query: 165 EFEGRTLKVNYAK------------------IKK-KNPFPPVQPKPFATFNLFIANLSFE 205
E EGR+L + A+ IKK KNP P +F+ NLSF+
Sbjct: 157 ELEGRSLLIKDAENFERADGSKAPTEAEKKEIKKQKNPPCPT---------IFLGNLSFD 207
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
K +RE F G D+ V ++ + G+ +V + + + A AI A F GR
Sbjct: 208 TTEKSIREAFEWAG-DIRKVRVATFEDSGKCKGFAYVDYHTVEAATKAIRAPDKHTFDGR 266
Query: 266 PLRVAPSRQFARLQTK 281
RV + + A +++K
Sbjct: 267 KCRVEFASEEAHMRSK 282
>gi|427786813|gb|JAA58858.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 341
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEA 154
++ SKT L + + T+T +D+ L +G ++ + + N+ +G FV SP A
Sbjct: 65 DQLSKTNLYIKGLTHTTTDKDLLNLCAPYGNIISTKAILDKDTNKCKGYGFVDFESPLAA 124
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+ L++ + ++ AK ++++P NL++ANL +DL +
Sbjct: 125 EKAVKALQA-----QGVQAQMAKQQEQDPT-----------NLYMANLPLYMAEQDLEQL 168
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG--RPLRV 269
+ G V + I DN +S G GF +SK+ E I+ F GK+ G PL V
Sbjct: 169 LQAHG--AVISTRILRDNSAQSRGVGFARMESKEKCEQIIATFNGKVLPGSKEPLLV 223
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +NV + ++ ALF ++G + I + S+ + RG F+ + D+A A+
Sbjct: 231 TNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEE 290
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L EF+G+ L V A+ K K + + + A + NLF+ NL + L
Sbjct: 291 LNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKL 350
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F G + SA+V+ + +S +GFV F + + A AI+ ++ G+PL VA
Sbjct: 351 EAEFAPFG-SITSAKVM-RNEEGKSKNFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 407
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 105 AQNVPWTSTHEDI--RAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159
A N+ + H DI +AL F G +L +++ +++G FV + A A++
Sbjct: 137 AGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVD 196
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
+ GR + V + KK+ ++ N+++ N+ + + F G
Sbjct: 197 AINGMMLNGREVYV-AQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYG 255
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS-RQFARL 278
+++ + D+ + G+GF++F++ A A+ F G+ L V + +++ RL
Sbjct: 256 P--ITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERL 313
Query: 279 Q 279
Q
Sbjct: 314 Q 314
>gi|344299844|gb|EGW30197.1| hypothetical protein SPAPADRAFT_63810 [Spathaspora passalidarum
NRRL Y-27907]
Length = 433
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 29/196 (14%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
+ N+P++ + ++ L + G V+ ++ M + ++RG V G+ +EA A+ +
Sbjct: 231 IFVGNLPFSINWQALKDLMRKAGDVIRADVRMDNWGKSRGFGTVVFGTEEEANKAVEMFQ 290
Query: 163 SYEFEGRTL-------------------KVNYAKIKKKNPFPPVQPKPFA---------T 194
YE EGR L + +Y + ++ + P V+P F +
Sbjct: 291 GYEIEGRKLDTRPGRNQSSASNGSNTSDRSSYRERERASSQPVVKPSEFTDGVTAGGERS 350
Query: 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
++++NL F + DL E F + G AE+I R +G V F+ ++++ AI
Sbjct: 351 DTIYVSNLPFATQNDDLFELFETVGR-TTKAEIILDPITGRPSGNAVVQFELAELSDNAI 409
Query: 255 SAFQGKLFMGRPLRVA 270
L+ GR ++++
Sbjct: 410 ENLNNYLYGGRNIQIS 425
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 32/194 (16%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P+ + +D+ +F + T++ ++ + ++ R+RG+A + + ++ +A+ + E+
Sbjct: 117 NIPFDCSDKDVADIFSKDFTIVRSDI-VTNRGRSRGMATIEFNNKEDVRSAIEKFDRSEY 175
Query: 167 EGRTL--KVNYAKIKKKNPFPPVQP-------------------------KPFATFNLFI 199
GR + + +Y +KK F + KP +F+
Sbjct: 176 RGREIFVRQDYPPPEKKEEFRERRETYDNRRDKSYESRRRDQHQQHQQSSKPGCE--IFV 233
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL F + L++ G DV+ A+V DN +S G+G V F +++ A A+ FQG
Sbjct: 234 GNLPFSINWQALKDLMRKAG-DVIRADVRM-DNWGKSRGFGTVVFGTEEEANKAVEMFQG 291
Query: 260 KLFMGRPLRVAPSR 273
GR L P R
Sbjct: 292 YEIEGRKLDTRPGR 305
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQH-GTVLDIELSMHSKNRNRGLAF 145
++RE E+ T + +N E +R FEQ+ G L +++ M +++G F
Sbjct: 177 KEREAEFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGF 236
Query: 146 VTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---N 196
V+ ++A A++ + + E GR + V A+ K K F ++ + + + N
Sbjct: 237 VSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVN 296
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + L + F G + SA+V+ + RS G+GFV F S + A A++
Sbjct: 297 LYVKNLDDNINDERLWKEFSPFG-TITSAKVMMEEG--RSRGFGFVCFSSPEEATKAVTE 353
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 354 MNGRIIGSKPLYVA 367
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G FV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + + F N++I N + + LRE+F +S +V+ D +S G+
Sbjct: 178 EREAEFGAKAREFT--NVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMM-DEGGKSKGF 234
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
GFVSF+ + A+ A+ K GR + V +++ A QT+
Sbjct: 235 GFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTE 276
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R +Y L +N+ E + F GT+ ++ M + R+RG FV SP
Sbjct: 286 QERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMME-EGRSRGFGFVCFSSP 344
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 345 EEATKAVTEMNGRIIGSKPLYVALAQRKEE 374
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ + E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 31 VNNNCSSPVDSGKTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 88
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 89 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 139
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 140 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 198
Query: 260 K 260
+
Sbjct: 199 Q 199
>gi|317484641|ref|ZP_07943544.1| RNA recognition domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|345888525|ref|ZP_08839605.1| hypothetical protein HMPREF0178_02379 [Bilophila sp. 4_1_30]
gi|316924115|gb|EFV45298.1| RNA recognition domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|345040599|gb|EGW44839.1| hypothetical protein HMPREF0178_02379 [Bilophila sp. 4_1_30]
Length = 88
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+PW++T E +++LF +G V+ ++L S R RG FV M P A+AA+ L++
Sbjct: 9 NLPWSATEEQVQSLFADYGPVVSVKLVSDRETGRARGFGFVEMEEPG-ASAAIEALDNAN 67
Query: 166 FEGRTLKVNYAKIKKKNPFPP 186
F GRTL+VN A K + P PP
Sbjct: 68 FGGRTLRVNEA--KPRAPRPP 86
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ + E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGKTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|407927556|gb|EKG20446.1| hypothetical protein MPH_02256 [Macrophomina phaseolina MS6]
Length = 485
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 15/216 (6%)
Query: 60 ITPKKVSPFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRA 119
I P+ +P S+ + +SA + E +K L + T + +R
Sbjct: 47 IIPQNTNPIPTAISSPMSGSVMSPTSAGGY-VRRAAPEPNKRALYVGGLDPRITEDVLRQ 105
Query: 120 LFEQHGTVLDIELSMHSKNR--NRGL--AFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+FE G V+ +++ + KN+ ++GL FV P A A+ L ++VN+
Sbjct: 106 IFETAGHVVSVKI-IPDKNKFQSKGLNYGFVEYDDPGTAERAMQTLNGRRVHQSEIRVNW 164
Query: 176 AKIKKKNPFPPVQPKPFAT--FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP 233
A QPK + F++F+ +LS E + L + F + G V A V++
Sbjct: 165 AYQSNN------QPKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFG-QVSEARVMWDMKT 217
Query: 234 RRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
RS GYGFV+F+ + AE A+S+ G+ R +R
Sbjct: 218 GRSRGYGFVAFRDRGDAEKALSSMDGEWLGSRAIRC 253
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
++ T V P+T T D+ LF+ G V++ +RG AF+ M + + A
Sbjct: 303 QWQTTCYVGNLTPYT-TQSDLVPLFQNFGYVVETRFQ-----SDRGFAFIKMDTHENAAM 356
Query: 157 ALNNLESYEFEGRTLKVNYAK 177
A+ L Y GR LK ++ K
Sbjct: 357 AICQLNGYNVNGRPLKCSWGK 377
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 18/209 (8%)
Query: 89 VNTEQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAF 145
V ++R+ KTR + +N+ ++ E++R +F + GT+ + + ++R F
Sbjct: 191 VRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGF 250
Query: 146 VTMGSPDEATAALNNLESYE------FEGRTLKVNYAKIKKKNPFPPVQPKPF---ATFN 196
V + ++A A+ L Y+ F GR K + +++ K+ F + N
Sbjct: 251 VNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLN 310
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL L+E F G +++ + D S G GFV+F + + A A+S
Sbjct: 311 LYLKNLDDSISDDKLKELFSPYG--TITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSE 368
Query: 257 FQGKLFMGRPLRVAPSR----QFARLQTK 281
GK+ + +PL VA ++ + ARLQ +
Sbjct: 369 MNGKMVVSKPLYVALAQRKEERRARLQAQ 397
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 19/213 (8%)
Query: 71 HFSATTQDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI 130
HF Q P ++A VN + T L ++ T + LF Q G V+ +
Sbjct: 3 HFQVQQQQPQGGVNNAGGVNNQ------FVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSV 56
Query: 131 ELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189
+ + R+ G +V G+P +A AL L G+ +++ Y+ N P ++
Sbjct: 57 RVCRDLTSQRSLGYGYVNYGNPQDAARALEVLNFTPLHGKPIRIMYS-----NRDPTIRR 111
Query: 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249
N+FI NL K L + F + G +++S +V D+ +S GYGFV + S +
Sbjct: 112 S--GNGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVAV-DSSGQSKGYGFVQYDSDEA 167
Query: 250 AETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
A+ AI G L + + V P F R Q ++
Sbjct: 168 AQKAIEKLNGMLLNDKQVYVGP---FVRKQERD 197
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F S
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLF-S 145
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 146 QYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPLGAA 194
>gi|391344304|ref|XP_003746441.1| PREDICTED: ELAV-like protein 4-like [Metaseiulus occidentalis]
Length = 394
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P T T E+IR+LF G V +L ++ G FV + A
Sbjct: 63 EDSKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVCAEAAE 122
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L +DL + F
Sbjct: 123 KAINTLNGLRLQNKTIKVSYARPSS---------EAIKGANLYVSGLPKSMTQQDLEQLF 173
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254
G + S + + S G GFV F + AE AI
Sbjct: 174 APYGGIITSRILCDNITAGLSKGVGFVRFDQRVEAERAI 212
>gi|410902665|ref|XP_003964814.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F S
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLF-S 145
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 146 QYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPLGAA 194
>gi|115384864|ref|XP_001208979.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196671|gb|EAU38371.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 157
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 108 VPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
+ W +T E +RA FE+ GTV + I + R+RG FVT SP EA AALN L + EF
Sbjct: 36 LAWHTTDESLRAGFEKFGTVDNAIVVKDRDTGRSRGFGFVTFTSPQEADAALNELNNQEF 95
Query: 167 EGRTLKVNYA 176
+GR ++V++A
Sbjct: 96 DGRIIRVDFA 105
>gi|83767572|dbj|BAE57711.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867601|gb|EIT76847.1| alternative splicing factor SRp55/B52/SRp75 [Aspergillus oryzae
3.042]
Length = 298
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
E S TRL N+P T +DI F HG+ E+ + + G F+ ++A
Sbjct: 3 EVSSTRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKLMN-----GFGFIEY---EDAMD 54
Query: 157 ALNNL-ESYEFEGRTLKVNYAK-IKKKNPFP-----PVQPKPFAT-FNLFIANLSFEARA 208
A + + + +F+G L V +A+ ++K FP P P+P T + + ++ L E
Sbjct: 55 ARDVVPDGSDFKGERLTVQFARGPRRKENFPGPMDRPNMPRPRRTVYRMMVSGLP-ETSW 113
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
+DL++F G DVV +E R G GFV F++ +TAI G+ F G
Sbjct: 114 QDLKDFARGAGLDVVYSETG------REPGRGFVEFETANDLKTAIEKLDGRDFKG 163
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 18/197 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V + RE+E + T + +N+ +++ +FE++G++ ++ +RG
Sbjct: 166 VGRKDREKELGQKAKLFTNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGF 225
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAK--------IKKK-NPFPPVQPKPFA 193
FV P EA A++ L E EG+T V A+ +K+K + + +
Sbjct: 226 GFVAFEDPKEAEKAVSELHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQ 285
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR F G + SA+V+ D RS G+GFV F S + A A
Sbjct: 286 GINLYVKNLDDTIDDEHLRREFSVFG-TITSAKVMMDDG--RSKGFGFVCFSSPEEATKA 342
Query: 254 ISAFQGKLFMGRPLRVA 270
++ ++ +PL VA
Sbjct: 343 VTEMNNRIVGTKPLYVA 359
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
R+ G A+V + +A AL+ + G +++ +++ ++P + N+F
Sbjct: 41 RSLGYAYVNFQNMADAECALDTMNFEILNGCPMRIMWSQ---RDP----SLRKSGVGNVF 93
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
I NL K + + F + G +++S +V D +S GYGFV F ++ A +I
Sbjct: 94 IKNLDKNIDNKAMYDTFSAFG-NILSCKVA-QDETGQSKGYGFVHFDMEQSATQSIEKVN 151
Query: 259 GKLFMGRPLRVA 270
G L G+ + V
Sbjct: 152 GMLLNGKKVFVG 163
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R Y L +N+ T E +R F GT+ ++ M R++G FV SP+
Sbjct: 279 ERMNRYQGINLYVKNLDDTIDDEHLRREFSVFGTITSAKV-MMDDGRSKGFGFVCFSSPE 337
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKKK 181
EAT A+ + + + L V A+ K++
Sbjct: 338 EATKAVTEMNNRIVGTKPLYVALAQRKEE 366
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
+ RE S T+ + +N+ + T D+ +F ++G + + +++G FV
Sbjct: 191 QDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNF 250
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFI 199
+ D+A A+ L F+G+ V A+ K K + + + NL+I
Sbjct: 251 ANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYI 310
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL ++L E F SE + S +V+ D S G GFVSF + A A+ G
Sbjct: 311 KNLDDSVGDEELMELF-SEFGTITSCKVM-RDPNGISRGSGFVSFSIAEGATRALGEMNG 368
Query: 260 KLFMGRPLRVAPSR----QFARLQTK 281
K+ G+PL VA ++ + ARLQ +
Sbjct: 369 KMVAGKPLYVALAQRKEDRRARLQAQ 394
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF Q V+ + + + ++ G +V + +A A++ L G+ +++ Y+
Sbjct: 43 LFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSI- 101
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
++P + N+FI NL K L + F + G +++S +V D +S G
Sbjct: 102 --RDP----SARKSGAANVFIKNLDKAIDHKALYDTFSAFG-NILSCKVA-TDASGQSKG 153
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
+GFV F+S++ A+ AI G L + + V P F R Q +E
Sbjct: 154 HGFVQFESEESAQNAIDKLNGMLINDKQVFVGP---FLRKQDRE 194
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS 150
T++ ++Y T L +N+ + E++ LF + GT+ ++ +RG FV+
Sbjct: 296 TKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSI 355
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKK 180
+ AT AL + G+ L V A+ K+
Sbjct: 356 AEGATRALGEMNGKMVAGKPLYVALAQRKE 385
>gi|229595173|ref|XP_001019281.3| nucleolar phosphoprotein, putative [Tetrahymena thermophila]
gi|1262277|gb|AAA96781.1| nucleolar phosphoprotein [Tetrahymena thermophila]
gi|225566349|gb|EAR99036.3| nucleolar phosphoprotein, putative [Tetrahymena thermophila SB210]
Length = 476
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 77 QDPFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQH-GTVLDIELSMH 135
QD + + N +Q +++S ++ + + + + DI +++ G+V + L +
Sbjct: 240 QDQPIQKAQNGNANGKQGGDKFS-NEVIVKGLSFDADENDIGNFLDENCGSVARVNLLKN 298
Query: 136 SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF 195
+ R++G+AFV+ + + A+ + + EF GR L + K K K P P +
Sbjct: 299 EQGRSKGIAFVSFETEEGCNKAVE-MSNSEFMGRYLIIE--KTKPKTERPAHLPVDEDSK 355
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+F+ NLSF + L++FF S G V A + D +S G+G V F+ + E A+
Sbjct: 356 TIFVGNLSFRTDKETLKKFFASCGK-VADARIAEADG--KSRGFGHVEFEERSGVENALK 412
Query: 256 AFQGKLFMGRPLRV 269
G+ GRP++V
Sbjct: 413 KV-GEQIDGRPIKV 425
>gi|348509183|ref|XP_003442131.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oreochromis
niloticus]
Length = 359
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 14/173 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G + S ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 147 YGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPLGAA 195
>gi|148693298|gb|EDL25245.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Mus musculus]
Length = 250
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 21/176 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F S+ ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 144 F-SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPLGAA 194
>gi|149020435|gb|EDL78240.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Rattus norvegicus]
Length = 251
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 21/176 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F S+ ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 145 F-SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPLGAA 195
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE-GRTLKV 173
+ +R FE++G V+ ++ +RG FV+ PD A A + E + GR + V
Sbjct: 207 DKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYV 266
Query: 174 NYAKIKK------KNPFPPVQP---KPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224
A+ K K F ++ + + NL++ NL + LR+ F S+ + S
Sbjct: 267 GRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEF-SQFGTITS 325
Query: 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
++V+ + RS G+GFV F S + A A++ G++ + +PL VA
Sbjct: 326 SKVMTENG--RSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVA 369
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R + Y L +N+ T E +R F Q GT+ ++ M R++G FV SP
Sbjct: 288 QERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKV-MTENGRSKGFGFVCFSSP 346
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EAT A+ + + L V A+ K+
Sbjct: 347 EEATKAVTEMNGRIVVSKPLYVALAQRKE 375
>gi|40807107|gb|AAH65343.1| Elavl3 protein [Danio rerio]
Length = 359
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 14/173 (8%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ ++LF G + +L ++ G FV P++A A
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 95
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + + +T+KV+YA+ + NL+++ L KD+ + F
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
G + S ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 147 YGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPLGAA 195
>gi|303275187|ref|XP_003056892.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461244|gb|EEH58537.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ T E + +F Q G V+++ + N ++G FV + ++A A+ L +
Sbjct: 14 NLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADYAIKVLNMIK 73
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
G+ ++VN A KK+ NLF+ NL E K L + F + G + +
Sbjct: 74 LHGKPVRVNKASQDKKSND--------VGANLFVGNLDSELDEKLLYDTFSAFGVVITTP 125
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+++ + S G+GFVS+ S + A+ AI A G+ RP+ V
Sbjct: 126 KIMRDPDSGNSRGFGFVSYDSFEAADAAIEAMNGQFLCNRPISV 169
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ + E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGKTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|348587078|ref|XP_003479295.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cavia porcellus]
Length = 347
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 75 TTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
TT P ++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L
Sbjct: 14 TTNGPTTINNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 72 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------I 122
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
NL+++ L K+L + F G ++++ ++ S G GF+ F + AE
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 253 AISAFQGK 260
AI G+
Sbjct: 182 AIKGLNGQ 189
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF ++G L I + +++G FV+ ++A A++ + E GR + V
Sbjct: 205 EKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFG-TITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +GR L++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDEN--GSKGY 140
Query: 240 GFVSFKSKKVAETAISAFQG------KLFMGR 265
GFV F++ + AE AI G K+F+GR
Sbjct: 141 GFVHFETHEAAERAIEKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G FV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N++I N + + L+E F G +S V+ D +S G+G
Sbjct: 178 ERE-AELGARAREFTNVYIKNFGEDMDDEKLKELFSKYG-PALSIRVM-TDESGKSKGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FVSF+ + A+ A+ GK GR + V
Sbjct: 235 FVSFERHEDAQKAVDEMNGKELNGRQVYVG 264
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 92 EQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE+E + T + +N E ++ +FE++GT+ + M ++RG FV
Sbjct: 169 KEREKELGEKAKLFTNVYVKNFGDELNDETLKEMFEKYGTITSHRV-MIKDGKSRGFGFV 227
Query: 147 TMGSPDEATAALNNLESYE-------FEGRTLKVNYAKIKKKNPFPPVQPKPFATF---N 196
+P+ A A+ L E + GR K N +++ K F ++ + + N
Sbjct: 228 AFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN 287
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
L++ NL + LR+ F G + SA+V+ + RS G+GFV F + + A A++
Sbjct: 288 LYVKNLDDSIDDERLRKEFSPFG-TITSAKVMLEEG--RSKGFGFVCFSAAEEATKAVTE 344
Query: 257 FQGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 345 MNGRIVGSKPLYVA 358
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H DI LFE+ G VL I + R+ G A+V P +A AL+ + +
Sbjct: 10 HADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTMNFDLIK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GRPIRIMWSQ---RDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++++ A T+I G L G+ + V
Sbjct: 122 A-QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVG 163
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+L++ +L + L E F S G V+S V RRS GY +V+F+ AE A+
Sbjct: 3 SLYVGDLHADITEAILFEKFSSAG-PVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 256 AFQGKLFMGRPLRVAPSRQ 274
L GRP+R+ S++
Sbjct: 62 TMNFDLIKGRPIRIMWSQR 80
>gi|395819370|ref|XP_003783066.1| PREDICTED: ELAV-like protein 2 [Otolemur garnettii]
Length = 388
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 158
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 159 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 260 K 260
+
Sbjct: 218 Q 218
>gi|444318191|ref|XP_004179753.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
gi|387512794|emb|CCH60234.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
Length = 403
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRN 140
D S+ + + E E T V + + W+ E ++ FE G VL + +R+
Sbjct: 143 DEESSESKKQKPDESEEPATIFVGR-LSWSIDDEWLKTEFEPIGGVLSARVIYEKGTDRS 201
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK-------KKNPFPPVQPKPFA 193
RG +V + A A+ ++ E +GR + + + K + F +P
Sbjct: 202 RGYGYVDFKNKTFAEKAIKEMQGKEIDGRPINCDMSTSKPASNGGDRAKKFGDTPSEPSE 261
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
T LF+ NLSF+A ++ E F G +++S + H + G+G+V + + A+ A
Sbjct: 262 T--LFLGNLSFDADRDNIYEVFSKYG-EIISVRIPTHPETEQPKGFGYVQYGDVESAKKA 318
Query: 254 ISAFQGKLFMGRPLRV 269
+ A QG+ RP+R+
Sbjct: 319 LDALQGEYINNRPVRL 334
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ + ++ F G ++ + ++ + ++G FV +PD+A A+
Sbjct: 191 TNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEA 250
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPV-----------QPKPFATFNLFIANLSFEARAK 209
+ + + L V A+ +KK + Q + N+++ N+ +
Sbjct: 251 MNGSKLGSKILYV--ARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDE 308
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+LR+ F + G ++++ I D+ S G+GFV F + + A A++ F G +F G+PL V
Sbjct: 309 ELRDHFSACG--IITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
Query: 270 A 270
A
Sbjct: 367 A 367
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 7/175 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+P + + ++ +F+++G +L ++ M +++G FV S + + A+ L
Sbjct: 102 LFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLN 161
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-NLFIANLSFEARAKDLREFFISEGWD 221
+ L V K KK+ + P P A + NL++ NL + L+E F S G
Sbjct: 162 GSTVGDKQLYV--GKFVKKSD--RILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFG-K 216
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
+VS VI DN S G+GFV++ + A+ A+ A G + L VA +++ A
Sbjct: 217 IVSL-VIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARAQKKA 270
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 92 EQREEE---YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+R+E+ Y + + +N+ + E++R F G + ++ K ++G FV
Sbjct: 282 EKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCF 341
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
+P+EA A+N + F G+ L V A+ K+
Sbjct: 342 STPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
>gi|33356910|pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 21/176 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 3 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 59
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ P NL+++ L K++ +
Sbjct: 60 DKAINTLNGLKLQTKTIKVSYAR-----P----SSASIRDANLYVSGLPKTMSQKEMEQL 110
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F S+ ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 111 F-SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPLGAA 161
>gi|363744747|ref|XP_001233484.2| PREDICTED: ELAV-like protein 2 isoform 1 [Gallus gallus]
Length = 345
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P + T E++++LF G + +L ++ G FV P +A
Sbjct: 34 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 93
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 94 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 144
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 145 SQYG-RIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ + E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGKTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|358412972|ref|XP_887465.4| PREDICTED: ELAV-like protein 3 isoform 8 [Bos taurus]
Length = 511
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 188 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 244
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 245 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 295
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
F S+ ++++ ++ S G GF+ F + AE AI G+ +G
Sbjct: 296 F-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 344
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+ W + +R FE G ++ + + R +G +V + +A A +
Sbjct: 236 LFVGNLSWNIDEDWLRREFEGFGEIVGCRIITDRETGRGKGFGYVEFATSADAAKAQAEM 295
Query: 162 ESYEFEGRTLKVNYAKIKKK----------NPFPPVQPKPFATFNLFIANLSFEARAKDL 211
YE +GR L V+++ ++K N + + P T LF+ NLSF+ +
Sbjct: 296 HQYELDGRPLNVDFSTPRQKPDAGKTNDRANKYGDKRSAPSNT--LFLGNLSFDCTNDSI 353
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+E F G ++ + + G+G+V F S++ A A+ A G+ GR +R+
Sbjct: 354 QEIFAEYG-NITRVSLPTDRDTGSIKGFGYVDFGSQEEATAALDALNGQDIAGRNIRI 410
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 67 PFVFHFSATTQDPFVDSSSAAAVNTEQREEEYSKTR------LVAQNVPWTSTHEDIRAL 120
P FS Q P A T R +Y R L N+ + T++ I+ +
Sbjct: 304 PLNVDFSTPRQKP-------DAGKTNDRANKYGDKRSAPSNTLFLGNLSFDCTNDSIQEI 356
Query: 121 FEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F ++G + + L + +G +V GS +EATAAL+ L + GR ++++YA +
Sbjct: 357 FAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAALDALNGQDIAGRNIRIDYAAPR 416
Query: 180 KKN 182
+ N
Sbjct: 417 EDN 419
>gi|212274941|ref|NP_001130982.1| hypothetical protein [Zea mays]
gi|194690622|gb|ACF79395.1| unknown [Zea mays]
gi|413951564|gb|AFW84213.1| hypothetical protein ZEAMMB73_909652 [Zea mays]
Length = 142
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 169 RTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVI 228
R+L AK+ + PP P P + LF+A LS+ + L + F S G V ++
Sbjct: 24 RSLSAAAAKLP--DELPPGAPAPTSDSRLFVAGLSWSVDERSLTDAFSSFG-TVTEVRIM 80
Query: 229 FHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+ N RS G+GFV F + A+ A A GK+ +GRPLR++
Sbjct: 81 YDKNSGRSRGFGFVHFSNDNEAKCAKDAMDGKVMLGRPLRIS 122
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATA 156
S +RL + W+ + F GTV ++ + M+ KN R+RG FV + +EA
Sbjct: 46 SDSRLFVAGLSWSVDERSLTDAFSSFGTVTEVRI-MYDKNSGRSRGFGFVHFSNDNEAKC 104
Query: 157 ALNNLESYEFEGRTLKVNYA 176
A + ++ GR L++++A
Sbjct: 105 AKDAMDGKVMLGRPLRISFA 124
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ ++T E+++ +F +HG + + + +++ FV S D+A A+ L +
Sbjct: 196 KNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKK 255
Query: 166 FEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNLFIANLSFEARAKDLREFFI 216
+G V A+ K K F + F NL+I NL + L+E F
Sbjct: 256 IDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFS 315
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR--- 273
G +++ + D S G GFV+F + + A A++ GK+ + +PL VA ++
Sbjct: 316 DFG--AITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVALAQRKE 373
Query: 274 -QFARLQTK 281
+ ARLQ +
Sbjct: 374 ERRARLQAQ 382
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEAT 155
++ T L ++ + T + +F Q G V+ + + S R+ G +V +P +A
Sbjct: 8 QFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 67
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
AL+ L + +++ Y+ P ++ A N+FI NL K L + F
Sbjct: 68 RALDVLNFTPLNNKPIRIMYSHRD-----PSIRKSGMA--NIFIKNLDKGIDHKALHDTF 120
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF 275
S G +++S +V D +S GYGFV F S++ A+ AI G L + + V F
Sbjct: 121 SSFG-NILSCKVA-TDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVG---HF 175
Query: 276 ARLQTKEG 283
R Q ++G
Sbjct: 176 LRKQDRDG 183
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ ++ R LFE +GT+ L++ + +++G FV + + A A++
Sbjct: 294 TNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDA 353
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L + G+ L V A+ + + F + + A NL+I N+ + + L
Sbjct: 354 LNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKL 413
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R F E + +++ I D+ S G+GFV F + A AI+ K+ +PL V+
Sbjct: 414 RAEF--EPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVS 470
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
+R + L +N+ E +RA FE +GT+ ++ K ++G FV +PD
Sbjct: 389 ERLAKLQGVNLYIKNIDDDMDDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPD 448
Query: 153 EATAALNNLESYEFEGRTLKVNYAK 177
EAT A+ + + + L V+ A+
Sbjct: 449 EATRAIAEMNNKMIGSKPLYVSLAQ 473
>gi|146165272|ref|XP_001014712.2| hypothetical protein TTHERM_00047170 [Tetrahymena thermophila]
gi|146145520|gb|EAR94568.2| hypothetical protein TTHERM_00047170 [Tetrahymena thermophila
SB210]
Length = 261
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 9/205 (4%)
Query: 85 SAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGL 143
S V ++ + K + +P+++ + I+ F+ GT+ +I+L + G
Sbjct: 8 SNTTVEVQENNDPSLKRSVFVSGLPYSADTDAIKEYFQNCGTIENIKLPRYQDTGKIIGY 67
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
+ +P+EA A+ L GR L ++ AK +KK + P +F+ NL+
Sbjct: 68 CHLVFSTPEEAQEAIK-LNKQVMNGRYLDISLAKGEKKVEYKNDVKAPEDCTTIFVKNLA 126
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
F+ ++ EFF G VV+ ++H + + G+ F+ FK A+ G F
Sbjct: 127 FDCTEDEVGEFFEKCG-KVVNVRFVYHYSQKHFKGFAFIEFKMNSSVNAALK-LNGTEFK 184
Query: 264 GRPLRV-----APSRQFARLQTKEG 283
GR L + + + F QT++G
Sbjct: 185 GRKLTIDYEVGSQKKGFRFKQTQDG 209
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E L N+ + H ++ + LF Q G + +++ S ++RG FV
Sbjct: 177 QKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNL 197
+EA A++++ E G+ L V A+ + K F ++ + + NL
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + L+E F + G + SA+V+ + S G+GFV F S + A A++
Sbjct: 297 YVKNLDDSINDERLKEVFSTYGV-ITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 354 NGRIVGTKPLYVA 366
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G++L ++ +++++ +RG FV + + A A+N + R +
Sbjct: 111 DNKALYDTFSTFGSILSSKV-VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + K ++K + + N+++ NL + L++ F S+ ++ S +V+ D+
Sbjct: 170 VGHFKSRQKRE-AELGARALGFTNIYVKNLHANVDEQRLQDLF-SQFGNMQSVKVM-RDS 226
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
+S G+GFV+F+ + A+ A+ GK G+ L V +++ A Q++
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
>gi|348587076|ref|XP_003479294.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cavia porcellus]
Length = 360
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 75 TTQDPF-VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133
TT P ++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L
Sbjct: 14 TTNGPTTINNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV 71
Query: 134 MHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPF 192
++ G FV P +A A+N L + +T+KV+YA+ +
Sbjct: 72 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------I 122
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
NL+++ L K+L + F S+ ++++ ++ S G GF+ F + AE
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 253 AISAFQGK 260
AI G+
Sbjct: 182 AIKGLNGQ 189
>gi|429892786|gb|AGA18938.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 418
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAAL 158
+ +L + W +T E++ F + G ++D + + + R+RG FVT P L
Sbjct: 3 RGKLFVYGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVL 62
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218
N + +GRT+ K NP +PK + +F+ L DLR FF
Sbjct: 63 QN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRY 116
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
G V +++ ++S G+GF+SF+ + E
Sbjct: 117 G-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 148
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 11/182 (6%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
+N E + SKT L+ +P T E+ ++LF G + +L ++ G
Sbjct: 17 GCVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 76
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 77 YGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSL 127
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
K++ + F S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 128 PKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 186
Query: 263 MG 264
+G
Sbjct: 187 LG 188
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 18/196 (9%)
Query: 89 VNTEQREEEYSK-----TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL 143
V RE+E + T + +N+ +++ +F+++GT+ ++ +RG
Sbjct: 166 VGRNDREKELGQRAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGF 225
Query: 144 AFVTMGSPDEATAALNNLESYEF-EGRTLKVNYAK--------IKKK-NPFPPVQPKPFA 193
FV P EA A+ L + EG+T VN A+ +K+K + + +
Sbjct: 226 GFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQ 285
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
NL++ NL + LR F + G + SA+V+ D RS G+GFV F S + A A
Sbjct: 286 GVNLYVKNLDDTIDDERLRREFSAFG-TIKSAKVMMDDG--RSKGFGFVYFSSPEEATKA 342
Query: 254 ISAFQGKLFMGRPLRV 269
++ G++ +PL V
Sbjct: 343 VTDMNGRIVGTKPLYV 358
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 114 HEDIR--ALFEQH---GTVLDIELSMHSKNRNR-GLAFVTMGSPDEATAALNNLESYEFE 167
H D+ LFE+ G +L I + H R+ G A+V + +A AL+ + +
Sbjct: 10 HSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDTMNFDILK 69
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
G +++ +++ ++P + N+FI NL K + + F + G +++S +V
Sbjct: 70 GHPMRIMWSQ---RDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCKV 121
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D S GYGFV F++K+ A +I G L G+ + V
Sbjct: 122 A-QDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVG 163
>gi|118372171|ref|XP_001019282.1| nucleolar phosphoprotein [Tetrahymena thermophila]
gi|89301049|gb|EAR99037.1| nucleolar phosphoprotein [Tetrahymena thermophila SB210]
Length = 320
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 30/270 (11%)
Query: 22 QQQSHEAPFVSLLQKQQKQHYNYFFPLSSSPFHAYTFPI--TPKKVSPFVFHFSATTQDP 79
Q +S FVS + ++ YN +++S F I T K S Q P
Sbjct: 69 QGRSKGIAFVSF---ETEEGYNKALEMNNSEFMGRYLIIEKTKSKAERLTQMHSYADQGP 125
Query: 80 ---FVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDI-RALFEQHGTVLDIELSMH 135
VD+ S+ +N E ++ + + + + DI L E G+V + L +
Sbjct: 126 KIVIVDNISSK-INKFDNE-------VIVKGLSFDADENDIGNYLNENCGSVTRVNLLKN 177
Query: 136 SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF 195
+ ++G+AFV+ + + A+ L EF GR + + K K K P P +
Sbjct: 178 EQGCSKGVAFVSFETEEGCNKAVE-LSDSEFMGRQIFI--EKTKPKIERPAQLPADQDSK 234
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+F+ NLSF + L++FF S G VV+A + + +S G+G V F+ + E A+
Sbjct: 235 TIFVGNLSFVTNKETLKKFFASCG-KVVNARI--AEAEGKSRGFGHVEFEERSGVENALK 291
Query: 256 AFQGKLFMGRPLR--VAPSR----QFARLQ 279
G+ GRP+R VA SR F R+Q
Sbjct: 292 -MAGEQIDGRPIRVDVAASRGKLVGFNRIQ 320
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 20/188 (10%)
Query: 103 LVAQNVPWTSTHEDIRALFEQH-GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
++ + + + + DI F+Q G V ++L M+S+ R++G+AFV+ + + AL +
Sbjct: 34 VIVKGLSFDANENDISNYFDQKCGQVSKVKLLMNSQGRSKGIAFVSFETEEGYNKAL-EM 92
Query: 162 ESYEFEGRTLKVNYAKIK-----KKNPFPPVQPKPFATFNL-----------FIANLSFE 205
+ EF GR L + K K + + + PK N+ + LSF+
Sbjct: 93 NNSEFMGRYLIIEKTKSKAERLTQMHSYADQGPKIVIVDNISSKINKFDNEVIVKGLSFD 152
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
A D+ +++E V+ + + S G FVSF++++ A+ + FMGR
Sbjct: 153 ADENDIGN-YLNENCGSVTRVNLLKNEQGCSKGVAFVSFETEEGCNKAVELSDSE-FMGR 210
Query: 266 PLRVAPSR 273
+ + ++
Sbjct: 211 QIFIEKTK 218
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
++ +F ++G + + ++ + +G FV P+ A+ A+++L EG LK++
Sbjct: 259 LKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVC 318
Query: 177 KIKKKN-----------PFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ +KK+ + + + NL++ N+ E + LR F G + SA
Sbjct: 319 RAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGT-ITSA 377
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ +N RS G+GFV F+ + A A++ K+ +PL VA
Sbjct: 378 KVMVDEN-GRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVA 421
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R + Y L +N+ T E +RA F Q GT+ ++ + R++G FV P
Sbjct: 339 QERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKP 398
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKK 180
+EATAA+ + S + L V A+ K+
Sbjct: 399 EEATAAVTEMNSKMIGAKPLYVALAQRKE 427
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATA 156
YS L ++ T + F G VL I + + +R + G A+V P +A
Sbjct: 59 YSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 118
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
AL+ + GR +++ +++ ++P + N+FI NL K + + F
Sbjct: 119 ALDTMNFEIIHGRPMRIMWSQ---RDP----AARRAGNGNIFIKNLDRVIDNKSIYDTFS 171
Query: 217 SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
G +++S +V D+ S GYGFV F+++ A+TAI G L
Sbjct: 172 LFG-NILSCKVATDDD-GNSKGYGFVHFETEASAQTAIEKVNGMLL 215
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 176 AKIKKKNPFPPVQPKPFATFN---LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
A I++ P + P AT++ L+I +L + L E F G V+S V +
Sbjct: 40 AAIQQGPPQTNIGYPPNATYSMASLYIGDLHGDVTESMLFEKFSMAG-PVLSIRVCRDNT 98
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
R S GY +V+F+ AE A+ ++ GRP+R+
Sbjct: 99 SRLSLGYAYVNFQQPADAERALDTMNFEIIHGRPMRI 135
>gi|212543387|ref|XP_002151848.1| pre-mRNA splicing factor (Prp24), putative [Talaromyces marneffei
ATCC 18224]
gi|210066755|gb|EEA20848.1| pre-mRNA splicing factor (Prp24), putative [Talaromyces marneffei
ATCC 18224]
Length = 1275
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 85 SAAAVNTEQRE--------EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS 136
+AAA+ +Q+ E S + + N P T+ IR+LF + G ++++
Sbjct: 883 AAAALTRDQKRINGQTVDVEMGSGSTVYVTNFPPTADEAFIRSLFSEAGEIVEVRFPSLK 942
Query: 137 KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN 196
N +R +V SPD+A AA + +G L+V KI + Q +
Sbjct: 943 YNTHRRFCYVQFKSPDQAIAATKLDNNVVGDGLNLQV---KISDPSARQDRQGPMYEERE 999
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
+ I+N+ F+AR DL+E F G + I G+GF+ F SKK TA A
Sbjct: 1000 IHISNIHFDARENDLKELFSKYG--TIETVRIPSKVNGEHRGFGFIVF-SKKEEATAALA 1056
Query: 257 FQGKLFMGRPLRV 269
+ F GRPL+V
Sbjct: 1057 MHKQDFRGRPLQV 1069
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE E + N+ + H D+ + LF Q G +L +++ +RG FV
Sbjct: 178 EREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKKKNP----FPPVQPKPFATF---NLF 198
+EA A+ N+ E GR L V A +++++N F ++ + NL+
Sbjct: 238 FEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL + LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDSIDDEKLRKEFSPYGV-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVGTKPLYVA 366
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A++ + R + V + K ++
Sbjct: 119 FSTFGNILSCKV-VCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N+++ NL + + L++ F S+ ++S +V+ D+ S G+G
Sbjct: 178 EREVE-LGARAMEFTNIYVKNLHVDVDEQRLQDLF-SQFGKMLSVKVM-RDDSGHSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV+F+ + A+ A+ G+ GR L V
Sbjct: 235 FVNFEKHEEAQKAVVNMNGREVSGRLLYVG 264
>gi|218885158|ref|YP_002434479.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756112|gb|ACL07011.1| RNP-1 like RNA-binding protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 88
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNNL 161
L N+P++++ ++IR LF QHG VL ++L S R RG FV M + D A +A+ L
Sbjct: 5 LYVGNLPFSASEDEIRDLFSQHGQVLSVKLISDRETGRPRGFGFVEMEAAD-ANSAVEAL 63
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPP 186
Y F GR LKVN A + + P PP
Sbjct: 64 NGYSFGGRALKVNEA--QPRAPRPP 86
>gi|406993247|gb|EKE12437.1| Glycine-rich RNA-binding protein GRP1A [uncultured bacterium]
Length = 86
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAAL 158
+++L N+ W T ED++ALF G+V+D ++ R+RG FVTMGS EA A+
Sbjct: 2 QSKLFVGNLAWEVTVEDLKALFAGAGSVVDAAVITDRMTGRSRGFGFVTMGSDAEAQTAV 61
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPK 190
Y+ +GR L VN A+ P++P+
Sbjct: 62 EKFNQYDLKGRKLNVNVAR--------PMEPR 85
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256
LF+ NL++E +DL+ F G VV A VI RS G+GFV+ S A+TA+
Sbjct: 5 LFVGNLAWEVTVEDLKALFAGAG-SVVDAAVITDRMTGRSRGFGFVTMGSDAEAQTAVEK 63
Query: 257 FQGKLFMGRPLRVAPSR 273
F GR L V +R
Sbjct: 64 FNQYDLKGRKLNVNVAR 80
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E L N+ + H ++ + LF Q G + +++ S ++RG FV
Sbjct: 177 QKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNL 197
+EA A++++ E G+ L V A+ + K F ++ + + NL
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + L+E F + G + SA+V+ + S G+GFV F S + A A++
Sbjct: 297 YVKNLDDSINDERLKEVFSTYGV-ITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 354 NGRIVGTKPLYVA 366
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G++L ++ +++++ +RG FV + + A A+N + R +
Sbjct: 111 DNKALYDTFSTFGSILSSKV-VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + K ++K + + N+++ NL + L++ F S+ ++ S +V+ D+
Sbjct: 170 VGHFKSRQKRE-AELGARALGFTNIYVKNLHANVDEQRLQDLF-SQFGNMQSVKVM-RDS 226
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
+S G+GFV+F+ + A+ A+ GK G+ L V +++ A Q++
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
>gi|432103090|gb|ELK30412.1| ELAV-like protein 2 [Myotis davidii]
Length = 416
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 78 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 135
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 136 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 186
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 187 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 245
Query: 260 K 260
+
Sbjct: 246 Q 246
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ + +R F G ++ + ++ S ++G FV +P++A A+
Sbjct: 189 TNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMET 248
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPV-----------QPKPFATFNLFIANLSFEARAK 209
+ + + L V A+ +KK + Q + N+++ N+ +
Sbjct: 249 MNGLQLGSKILYV--ARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDE 306
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
LR+ F G +++ I D+ S G+GFV F + + A A+++F G +F G+PL V
Sbjct: 307 GLRDHFSVCG--TITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYV 364
Query: 270 A 270
+
Sbjct: 365 S 365
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 5/171 (2%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + + + +F++ G +L ++ M +++G FV + + A AA+ L Y
Sbjct: 103 KNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYL 162
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V K KK+ P T NL++ NL + LRE F S G + A
Sbjct: 163 VGDKQIYV--GKFVKKSDRISSGPDTRYT-NLYMKNLDLDISETLLREKFSSFGKIISLA 219
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276
+ D+ S G+GFV+F + + A+ A+ G + L VA +++ A
Sbjct: 220 --VAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKA 268
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 92 EQREEE---YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
E+R+E+ Y + + +N+ + E +R F GT+ ++ K ++G FV
Sbjct: 280 EKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCF 339
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
+P+EA A+N+ + F G+ L V+ A+ K+
Sbjct: 340 STPEEANKAVNSFHGFMFHGKPLYVSLAQRKE 371
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLS 203
+V SP +A A+ G+ ++V +++ ++P + N+F+ NL+
Sbjct: 54 GYVNFLSPHDAIRAIEVKNHSTLNGKAIRVMWSR---RDP----DARKSCIGNVFVKNLA 106
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
L + F G +++S++V+ ++ + S GYGFV F++++ A AI G L
Sbjct: 107 ESIDNSGLEDMFKKFG-NILSSKVVMSEDGK-SKGYGFVQFETEESANAAIERLNGYLVG 164
Query: 264 GRPLRVA 270
+ + V
Sbjct: 165 DKQIYVG 171
>gi|390458027|ref|XP_003732041.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897271|ref|XP_003911692.1| PREDICTED: ELAV-like protein 2 isoform 6 [Papio anubis]
gi|426361471|ref|XP_004047934.1| PREDICTED: ELAV-like protein 2 isoform 6 [Gorilla gorilla gorilla]
Length = 390
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKN 138
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L ++
Sbjct: 50 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEG 107
Query: 139 RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLF 198
++ G FV P +A A+N L + +T+KV+YA+ + NL+
Sbjct: 108 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLY 158
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
++ L K+L + F G ++++ ++ S G GF+ F + AE AI
Sbjct: 159 VSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 217
Query: 259 GK 260
G+
Sbjct: 218 GQ 219
>gi|355755476|gb|EHH59223.1| Hu-antigen C, partial [Macaca fascicularis]
Length = 237
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 92
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 143
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264
F S+ ++++ ++ S G GF+ F + AE AI G+ +G
Sbjct: 144 F-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 192
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 29 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 88
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 89 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 139
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 140 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 188
>gi|146093095|ref|XP_001466659.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|134071022|emb|CAM69702.1| putative RNA-binding protein [Leishmania infantum JPCM5]
Length = 639
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 17/173 (9%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL--SMHSKNRNRGLAFVTMGSPDEATA 156
S+T L + + T +D+R LFEQ+GT++ L +H+ + G AFV + DEA A
Sbjct: 64 SQTNLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHT-GESLGTAFVRYSTHDEARA 122
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF- 215
A+ L+ E GR + + +A K+++ P LF+ N+ + A+ LR+ F
Sbjct: 123 AMAALDGRELYGRPISIQWA--KREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFS 180
Query: 216 -------ISEGWDVVSAEVIFHDNPRRSAG----YGFVSFKSKKVAETAISAF 257
++ D A + + R A F+ F+ VAE A+SA
Sbjct: 181 KFGSISNVTLHSDTAPAATRDNGDSSRPASQMRNIAFILFQDDDVAEQAVSAL 233
>gi|393217699|gb|EJD03188.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 142
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
++ N+ W +T + +R F +G V+D I + R+RG FVT S EAT A++
Sbjct: 4 KVYVGNLSWNTTDDTLRKAFSDYGQVVDSIVMRDRDTGRSRGFGFVTFSSETEATGAISA 63
Query: 161 LESYEFEGRTLKVNYAKIK 179
L EFEGR +KVN+A +
Sbjct: 64 LNEQEFEGRRIKVNFANAR 82
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
T +++ NLS+ LR+ F G VV + V+ + RS G+GFV+F S+ A A
Sbjct: 2 TAKVYVGNLSWNTTDDTLRKAFSDYG-QVVDSIVMRDRDTGRSRGFGFVTFSSETEATGA 60
Query: 254 ISAFQGKLFMGRPLRV 269
ISA + F GR ++V
Sbjct: 61 ISALNEQEFEGRRIKV 76
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDI-----RALFEQHGTVLDIELSMHSKNRNRGLAFV 146
++RE E L N+ + H ++ + LF Q G + +++ S ++RG FV
Sbjct: 177 QKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPVQPK---PFATFNL 197
+EA A++++ E G+ L V A+ + K F ++ + + NL
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNL 296
Query: 198 FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257
++ NL + L+E F + G + SA+V+ + S G+GFV F S + A A++
Sbjct: 297 YVKNLDDSINDERLKEVFSTYGV-ITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 QGKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 354 NGRIVGTKPLYVA 366
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G++L ++ +++++ +RG FV + + A A+N + R +
Sbjct: 111 DNKALYDTFSTFGSILSSKV-VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVF 169
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + K ++K + + N+++ NL + L++ F S+ ++ S +V+ D+
Sbjct: 170 VGHFKSRQKRE-AELGARALGFTNIYVKNLHANVDEQRLQDLF-SQFGNMQSVKVM-RDS 226
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
+S G+GFV+F+ + A+ A+ GK G+ L V +++ A Q++
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
>gi|389593931|ref|XP_003722214.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|321438712|emb|CBZ12472.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 639
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 23/176 (13%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIEL--SMHSKNRNRGLAFVTMGSPDEATA 156
S+T L + + T +D+R LFEQ+GT++ L +H+ + G AFV + DEA+A
Sbjct: 64 SQTNLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHT-GESLGTAFVRYSTHDEASA 122
Query: 157 ALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216
A+ L+ E GR + + +A K+++ P LF+ N+ + A+ LR+ F
Sbjct: 123 AMAALDGRELYGRPISIQWA--KREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFS 180
Query: 217 SEGWDVVSAEVIFH------------DNPRRSA---GYGFVSFKSKKVAETAISAF 257
G + V H DN R ++ F+ F+ VAE A+ A
Sbjct: 181 KFGS---ISNVTLHSDTAPAAARDNGDNSRPASQMRNIAFILFQDDDVAEQAVGAL 233
>gi|366992143|ref|XP_003675837.1| hypothetical protein NCAS_0C04830 [Naumovozyma castellii CBS 4309]
gi|342301702|emb|CCC69473.1| hypothetical protein NCAS_0C04830 [Naumovozyma castellii CBS 4309]
Length = 377
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 16/181 (8%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEAT 155
E++ + + N+ + +T ED+R F Q G V++ E+ M + R++G+ V +P +A
Sbjct: 73 EKHHENGIFIGNLSFDATEEDLRDFFSQVGEVVNAEV-MSYRGRSKGMGTVEFTNPADAE 131
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT-------FNLFIANLSFEARA 208
A+ F GR + V K++ PP + F + + F+ NL +
Sbjct: 132 EAIRQYNGVPFMGRDIFV------KQDQPPPGSRQEFKSSEPTQQGYEAFVVNLPYSITW 185
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
++L++ F E DV+ A+V N S G+G V + +++ AI +F G GR L
Sbjct: 186 QNLKDIF-RECGDVIRADVELDYN-GYSRGFGSVIYANEEDMFKAIDSFNGAELEGRILE 243
Query: 269 V 269
V
Sbjct: 244 V 244
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P++ T ++++ +F + G V+ ++ + +RG V + ++ A+++ E
Sbjct: 178 NLPYSITWQNLKDIFRECGDVIRADVELDYNGYSRGFGSVIYANEEDMFKAIDSFNGAEL 237
Query: 167 EGRTLKVNYAKI-----------------------KKKNP-FPPVQPKPFA--------- 193
EGR L+V K K++ P PP F
Sbjct: 238 EGRILEVREGKFNHPRDTFDDRRDFDDRRDFDDVPKEEEPVLPPAHNPSFTEGVSGDGER 297
Query: 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253
++ NL DL + F S G ++ AE+++ D S G V + S+ A+
Sbjct: 298 NNTVYCNNLPLSTTVPDLYDLFGSVG-EIAMAELVY-DETGTSTGAAVVEYASQDAADVC 355
Query: 254 ISAFQGKLFMGRPLRV 269
I+ G + GR L +
Sbjct: 356 INKLNGYNYGGRDLHI 371
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 28 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 87
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 88 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 138
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 139 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 187
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P + ++ LF Q G +L +++ + R+R FV +EA A+ +
Sbjct: 191 TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVH 250
Query: 161 LESYEFEGRTLKVNYA--KIKKKN----PFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E GR L + A +++++N F ++ + + NL++ NL L
Sbjct: 251 MNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F G + SA+V+ + S G+GFV F S + A A++ G++ +PL VA
Sbjct: 311 RKEFSPYGV-ITSAKVMTEGS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ K+ +RG FV + + A A+N + R + V + K ++
Sbjct: 119 FSTFGNILSCKVAC-DKHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N+++ NL + + L++ F S+ ++S +V+ DN RS +G
Sbjct: 178 ERA-AELGARALEFTNIYVKNLPADVDEQGLQDLF-SQFGKMLSVKVM-RDNSGRSRCFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPL 267
FV+F+ + A+ A+ GK GR L
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLL 261
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 168
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 169 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>gi|15223293|ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|21554268|gb|AAM63343.1| ribonucleoprotein, putative [Arabidopsis thaliana]
gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|332189110|gb|AEE27231.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 293
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 23/197 (11%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNL 161
L N+P + + +F+ GTV+ +E+S + + +RG +VTMGS + A A+ +L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 162 ESYEFEGRTLKVNYA----KIKKKNP-FPPVQPKPFATF----NLFIANLSFEARAKDLR 212
+ E GR ++V Y+ ++NP PK + +++ NL + + LR
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLR 229
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
F S+ +VS V+ R+ + F+SF S + + A+S F G + GR
Sbjct: 230 NHF-SKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGR------- 280
Query: 273 RQFARLQTKEGLHSDET 289
R+ +EG+ E+
Sbjct: 281 ----RIIVREGIEKSES 293
>gi|46592826|ref|NP_997569.1| ELAV-like protein 2 isoform 3 [Mus musculus]
gi|49114392|gb|AAH46598.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 347
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|213625406|gb|AAI70539.1| Xel-1 protein [Xenopus laevis]
Length = 388
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMG 149
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 115
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAK 209
P +A A+N L + +T+KV+YA+ + NL+++ L K
Sbjct: 116 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQK 166
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 167 ELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 216
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 168
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 169 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
>gi|384490131|gb|EIE81353.1| hypothetical protein RO3G_06058 [Rhizopus delemar RA 99-880]
Length = 423
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+ + ST +D+R F G + D+ + M + +NRG V + + AAL + E
Sbjct: 206 GLNYQSTADDVREFFGSCGEIKDVRIRMDDATGKNRGFCHVDFATQEGKEAALA-MSGNE 264
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLR----EFFISEGWD 221
F GR ++++ A + + AT +FIANL+ + + R E F G
Sbjct: 265 FMGRKIRLDGADGSTRQRVKKEESYSSATSKVFIANLNHDHDEQSHRAALTEAFSQFGTI 324
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
V + ++ G G++ F++K+ AE A+ G GRPLR
Sbjct: 325 VGDIRLPYNRETGGLKGIGYIEFETKEQAEAAVKGMSGVEINGRPLRT 372
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 11/168 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ T T + ++ +F G V + + M + +++ FV SPD+A A++
Sbjct: 195 TNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDV 254
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQ---------PKPFATFNLFIANLSFEARAKDL 211
+ +TL V A+ K + Q + NL++ NL+ + K L
Sbjct: 255 MNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKL 314
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+E F + G ++S +VI H N S +GFV F S + A A+ A G
Sbjct: 315 KEVFSAYG-KILSVKVICH-NDGTSKQFGFVCFASPEEANKALVALNG 360
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 13/193 (6%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L +N+ ++ + + ++F ++GT+L +++ + R++G FV S D A A L
Sbjct: 107 LFVKNLDFSISSSCLESIFSKYGTILSCKVAGEN-GRSKGFGFVQFESQDSALVAQTALH 165
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
G+ L V K KK P T NL++ NL L++ F G
Sbjct: 166 DTMLGGKKLHV--CKFVKKTERTAAAPCEVFT-NLYVKNLDETITEDGLKDMFSVVG--D 220
Query: 223 VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK------LFMGRPLRVAPSRQFA 276
VS+ I D+ +S +GFV+FKS A+ A+ G LF+G+ R +
Sbjct: 221 VSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMIL 280
Query: 277 RLQTKEGLHSDET 289
+ + K+ LH+ T
Sbjct: 281 KQEYKD-LHNRST 292
>gi|396472554|ref|XP_003839148.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
gi|312215717|emb|CBX95669.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
Length = 379
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
L N+ + T + ++ +F + G + ++++ ++ +RG +V + +A A++NL+
Sbjct: 194 LYIGNLYYEVTADQLQRVFSRFGEIENVKIIYDNRGLSRGFGYVEFKNIPDAQTAIDNLD 253
Query: 163 SYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEG 219
FEGR L V + + K KN P T LFI N+SFE KDL + F E
Sbjct: 254 MQVFEGRNLVVQFHREKPGFGKNNRANSTNSPSKT--LFIGNMSFEMSDKDLNDLF-REV 310
Query: 220 WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
+VV V + G+ F A A + K+ GR LR+
Sbjct: 311 RNVVDVRVAIDRRTGQPRGFAHADFLDIASATHAKNILANKVVYGRELRI 360
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 92 EQREEEYSKTRLVAQNVP---------WTSTHEDIRALFEQHGTVLDIELSMHSK--NRN 140
E EEE S + P W+ E ++ FE G V+ + M+ + +R+
Sbjct: 158 EDEEEESSPKKAKTDGEPATVFVGRLSWSIDDEWLKQEFEHIGGVVAARV-MYERGTDRS 216
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPF 192
RG +V A A+ + E +GR + V+ + K ++ F + +P
Sbjct: 217 RGYGYVDFEDKSYAEKAVKEMHGKEIDGRPINVDMSTSKPTVNPREDRQKRFGDIPSEPS 276
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
T LF+ NLSF A ++ E F G +++S + H + G+G+V + S A+
Sbjct: 277 DT--LFLGNLSFNADRDNIYEIFGKFG-EIISVRIPTHPETEQPKGFGYVQYTSIDDAKK 333
Query: 253 AISAFQGKLFMGRPLRV 269
A+ A QG+ RP+R+
Sbjct: 334 ALEALQGEYIDNRPVRL 350
>gi|15020256|gb|AAK74153.1| ELAV-like neuronal protein-2 [Mus musculus]
Length = 347
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
>gi|363744745|ref|XP_003643117.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gallus gallus]
Length = 366
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEAT 155
E SKT L+ +P + T E++++LF G + +L ++ G FV P +A
Sbjct: 42 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 101
Query: 156 AALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
A+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 102 KAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF 152
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 153 -SQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>gi|15020254|gb|AAK74152.1| ELAV-like neuronal protein-3 [Mus musculus]
Length = 348
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,607,310,218
Number of Sequences: 23463169
Number of extensions: 186011976
Number of successful extensions: 543244
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3884
Number of HSP's successfully gapped in prelim test: 13134
Number of HSP's that attempted gapping in prelim test: 507112
Number of HSP's gapped (non-prelim): 39202
length of query: 306
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 164
effective length of database: 9,027,425,369
effective search space: 1480497760516
effective search space used: 1480497760516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)