BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021890
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 12/185 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
RL N+P++ T + +F + GTV ++E+ +R+RG AFVTMGS +EA A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------NLFIANLSFEARAKDLR 212
+ + GRT+KVN+ ++ + + K +T+ L++ANLS+ ++ LR
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 213 EFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
+ F + G+ +SA+VI+ + RS G+GF++F S + +A+ GRPLR+
Sbjct: 235 DAFADQPGF--MSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNV 292
Query: 272 SRQFA 276
+ Q A
Sbjct: 293 AGQKA 297
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 5/195 (2%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFV 146
A TE+ +E +L N+P+ E + LF+Q G V E+ + + +R+RG FV
Sbjct: 84 AGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFV 143
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFE 205
TM + +EA A+ Y+ GR L VN K + P P+ F T+ +++ N+ ++
Sbjct: 144 TMSTVEEADKAVELYSQYDLNGRLLTVN--KAAPRGSRPERAPRTFQPTYRIYVGNIPWD 201
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
L + F SE VVSA V+F RS G+GFV+ S+ AI+ G+ GR
Sbjct: 202 IDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGR 260
Query: 266 PLRVAPSRQFARLQT 280
+RV + + R T
Sbjct: 261 TIRVNAAEERPRRNT 275
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALN 159
+L N+P+ E + LFEQ G V++I +++++ ++RG FVTM + +EA A+
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAG-VVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFISE 218
Y+ GR L VN A + + P P P+ F ++ +++ N+ + L + F SE
Sbjct: 196 MYNRYDVNGRLLTVNKAARRGERPERP--PRTFEQSYRIYVGNIPWGIDDARLEQLF-SE 252
Query: 219 GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278
VVSA V++ RS G+GFV+ S+ AI+ G+ GR +RV + +R
Sbjct: 253 HGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
Query: 279 QT 280
T
Sbjct: 313 NT 314
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + + R+RG FVTM S E + A+ N
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 161 LESYEFEGRTLKVNYAKIK-KKNPF 184
L+ +GRT++VN A+ + ++N F
Sbjct: 291 LDGQSLDGRTIRVNVAEDRSRRNTF 315
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+ + + + LFEQ GTV E+ + + +++RG FVTM S DEA A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 159 NNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFA-TFNLFIANLSFEARAKDLREFFIS 217
Y+ GR L VN K + P P+ + F +++ NL ++ L + F S
Sbjct: 209 EKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
E VV A V++ RS G+GFV+ AISA G+ GR +RV
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + + LF +HG V++ + + R+RG FVTM DE A++
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 161 LESYEFEGRTLKVNYAK 177
L+ EGR ++VN A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 9/174 (5%)
Query: 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAAL 158
+ +L N+P+ E + +F+ G V E+ + + +R+RG FVTM + +EA A+
Sbjct: 54 EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 113
Query: 159 NNLESYEFEGRTLKVNYAKIK---KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFF 215
L Y+ +GR L VN A + ++ P +P + +++ NL ++ L + F
Sbjct: 114 ELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEP----SCRVYVGNLPWDVDTSRLEQLF 169
Query: 216 ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
SE VVSA V+ RS G+GFV+ S+ AI+A G+ GR +RV
Sbjct: 170 -SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIEL-SMHSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+PW + LF +HG V+ + S R+RG FVTM S E A+
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 161 LESYEFEGRTLKVNYAKIKKKNPF 184
L+ +GR ++VN A+ + + F
Sbjct: 210 LDGQTLDGRAVRVNVAEERPRRAF 233
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+P+++ + LFE+ G V +E+ ++ K R+RG FVTM S +E AA
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEV-IYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 NLESYEFEGRTLKVNYAK--IKKKNPFPPVQPKPFATF----NLFIANLSFEARAKDLRE 213
YE +GR L+VN K++N + +F +++ NL++ +D E
Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAW-GVDQDALE 205
Query: 214 FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
SE VV A+V++ + RS G+GFV++ S + AI + G GR +RV+P+
Sbjct: 206 TLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A+ +
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 161 LESYEFEGRTLKVNYAKIK 179
L+ + GR ++V+ A+ +
Sbjct: 249 LDGVDLNGRAIRVSPAEAR 267
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 23/182 (12%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
RL N+P ++++R + E+HG + +I M+ K R+R FVTM + ++A A +
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAI-EIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIE 143
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT------------FNLFIANLSFEAR 207
L E GR +KVN + P++ AT + ++I NL+
Sbjct: 144 KLNDTEIGGRKIKVNITE-------KPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVT 196
Query: 208 AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
+ L++FF SE V+ A+V +S G+GFVSF S++ E AI A + G+ +
Sbjct: 197 NELLKDFF-SEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKI 255
Query: 268 RV 269
RV
Sbjct: 256 RV 257
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYE 165
N+ T T+E ++ F + G VL ++ +++ G FV+ S +E AA+ L +
Sbjct: 190 NLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSV 249
Query: 166 FEGRTLKVNYA 176
EG+ ++VN A
Sbjct: 250 LEGQKIRVNKA 260
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 78 DPFVDSSSAAAVNTEQREE-------------------EYSKTRLVAQNVPWTSTHEDIR 118
DP + S A N+EQ E+ E S L N+ T + ++
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 119 ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
F+ G + +I++ + N+N AFV +A AL L + E +K+N+A
Sbjct: 93 QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-- 150
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
F Q TFNLF+ +L+ + LR F + +S V++ S G
Sbjct: 151 -----FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRG 204
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
YGFVSF S+ A+ A+ + QG+ GRPLR+
Sbjct: 205 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176
RG FV+ S D+A A+++++ + GR L++N+A
Sbjct: 203 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+P +T D+ LF+ G +LD + H +G F+ + ++A + L ++ F
Sbjct: 347 NIPHFATEADLIPLFQNFGFILDFK---HYP--EKGCCFIKYDTHEQAAVCIVALANFPF 401
Query: 167 EGRTLKVNYAK 177
+GR L+ + K
Sbjct: 402 QGRNLRTGWGK 412
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 32/193 (16%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALN 159
++ N+ +++ + LFE+ G V +E+ ++ K R+RG FVTM S +E AA
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEV-IYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 NLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN--------------------LFI 199
YE +GR L+VN PP + + ++F +++
Sbjct: 147 QFNGYELDGRALRVNSG--------PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYV 198
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NL++ +D E SE VV A+V++ + RS G+GFV++ S + AI + G
Sbjct: 199 GNLAWGV-DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257
Query: 260 KLFMGRPLRVAPS 272
GR +RV+P+
Sbjct: 258 VDLNGRAIRVSPA 270
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNN 160
R+ N+ W + + LF + G V+D ++ R+RG FVT S +E A+ +
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 161 LESYEFEGRTLKVNYAKIK 179
L+ + GR ++V+ A+ +
Sbjct: 255 LDGVDLNGRAIRVSPAEAR 273
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 41/215 (19%)
Query: 94 REEEYS-KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGS 150
+E+ +S +L N+P+ + LFE G V +E+ ++ K R+RG FVTM S
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV-IYDKITGRSRGFGFVTMSS 141
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF--------------- 195
E AA YE +GR L+VN P PP + F+
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVN------AGPPPPKREDGFSRGPRSSFGSSGSGYGGG 195
Query: 196 ---------NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246
+++ NLS+ L F +G VV A VI+ + RS G+GFV++ S
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG-KVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 247 KKVAETAISAFQGKLFMGRPLRVA------PSRQF 275
+ + AI + G GR +RV+ P RQ+
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 79 PFVDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK- 137
P D S + R S +L +VP T+T E+IR FEQHG VL++ L +
Sbjct: 101 PISDHGSFTGTDVSDRS---STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRT 157
Query: 138 NRNRGLAFV---TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFAT 194
+ +G FV T D A AL+N + ++V YA +++ T
Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERER---------IGT 208
Query: 195 --FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
F LF+ +L+ +A K++ E F+ G V + D R+S G GFV + SK+ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGH--VEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 253 AISAFQGKLFM 263
AI G M
Sbjct: 267 AIDGLNGTYTM 277
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
E ++E S+T L +N+P+++T E+++ +FE DI + N+G+A+V +
Sbjct: 317 ENKKERDSRT-LFVKNIPYSTTVEELQEIFEN---AKDIRIPTGKDGSNKGIAYVEFSNE 372
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDL 211
DEA AL + E EGR++ V++ K +N P+ + L + NLS+ A L
Sbjct: 373 DEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKV-LVVNNLSYSATEDSL 431
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
RE F + + N R+ G+ F+ F S + A+ A+ + GR +R+
Sbjct: 432 REVFEK------ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRL 483
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162
LV N+ +++T + +R +FE+ T + I ++ R +G AF+ S ++A A+++
Sbjct: 417 LVVNNLSYSATEDSLREVFEKA-TSIRIP---QNQGRAKGFAFIEFSSAEDAKDAMDSCN 472
Query: 163 SYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV 222
+ E EGR++++ +++ T LF+ LS + + L+E F
Sbjct: 473 NTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT--LFVRGLSEDTTEETLKEAFDGS---- 526
Query: 223 VSAEVIFHDNPRRSAGYGFVSF 244
V+A ++ + S G+GFV F
Sbjct: 527 VNARIVTDRDTGASKGFGFVDF 548
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + ED++ LF +G + I L ++ +++G FV + A A+
Sbjct: 233 TNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEE 292
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + + + NLFI NL ++ L
Sbjct: 293 LNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKL 352
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA V+ D +S G+GFV F S + A AI+ ++F G+PL VA
Sbjct: 353 EEEFKPFGT-ITSARVMV-DETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVA 409
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ T E + F+ GT+ + + +++G FV SP+EAT
Sbjct: 332 KYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATK 391
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + F G+ L V A+ K
Sbjct: 392 AITEMNQRMFFGKPLYVALAQRK 414
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N+++ N+ E +DL++ F G +++ + D +S G+GFV+++ + A A+
Sbjct: 234 NIYVKNIDLEYSEEDLKKLFTPYG--AITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVE 291
Query: 256 AFQGKLFMGRPLRVAPSRQ 274
K G+ + V +++
Sbjct: 292 ELNDKEINGQKIYVGRAQK 310
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 51/212 (24%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+P+ +D++ LF Q G+V+ ++ M+ + R+RG+ V M S EA A+ L
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQML 239
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN------------------------- 196
+ +F GRTL+V + F + KP++T
Sbjct: 240 HNTDFMGRTLEVRLDR------FAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANT 293
Query: 197 ------------------LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++ NL + ++L + F G V+ A + + RS G
Sbjct: 294 QVEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIG-SVIRARIAYEPT-GRSKG 351
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+G V F+++ A ++I G + GRPL+++
Sbjct: 352 FGVVQFENENDAASSIEKLNGYRYGGRPLQLS 383
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 13/189 (6%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
R+ N+ + +++ Q G VL+ E+ ++G A + + +EA A+ L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFN---------LFIANLSFEARAKDLR 212
+ +F GR + + + ++ F P A+ N LF+ NL + R +DL+
Sbjct: 138 SNQKFMGRLVYIREDR-EQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLK 196
Query: 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272
+ F G V+ A++ + RS G G V S K A AI FMGR L V
Sbjct: 197 DLFRQAG-SVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLD 254
Query: 273 RQFARLQTK 281
R FA ++K
Sbjct: 255 R-FAHHKSK 262
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 107 NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF 166
N+PW ++ ++ LF G+V+ ++ R++G V + ++A +++ L Y +
Sbjct: 316 NLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRY 375
Query: 167 EGRTLKVNYAKIKKKNPFPPV 187
GR L+++YA P P V
Sbjct: 376 GGRPLQLSYAHY--ATPLPAV 394
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + A+N+ + E+ + LFE +G + I L + +++G FV + + A A++
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + + + + + NLFI NL ++ L
Sbjct: 292 LNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKL 351
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA V+ D +S G+GFV F S + A AI+ ++ G+PL VA
Sbjct: 352 EEEFKPFG-SITSARVMV-DETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVA 408
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ T E + F+ G++ + + +++G FV SP+EAT
Sbjct: 331 KYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATK 390
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + G+ L V A+ K
Sbjct: 391 AITEMNQRMIYGKPLYVALAQRK 413
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
N++ N+ + ++ ++ F E + +++ + D+ +S G+GFV+F++ + A A+
Sbjct: 233 NVYAKNIDLDFSEEEFKKLF--EAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVD 290
Query: 256 AFQGKLFMGRPLRVAPSRQ 274
K G+ + V +++
Sbjct: 291 ELNDKEINGQKIYVGRAQK 309
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPK---PFATFNLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F+ G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVSTKPLYVA 366
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSAFGNILSCKV-VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + K LRE F + G + +S +V+ D+ RS G+G
Sbjct: 178 ERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG-NTLSVKVMM-DDSGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV++ + + A+ A+S GK GR + V
Sbjct: 235 FVNYGNHEEAQKAVSEMNGKEVNGRMIYVG 264
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250
P A+ L+I +L + L E F S ++S V RRS Y +++F+ A
Sbjct: 9 PLAS--LYIGDLHPDVTEAMLYEKF-SPAGPIMSIRVCRDIATRRSLSYAYINFQQPADA 65
Query: 251 ETAISAFQGKLFMGRPLRV 269
E A+ ++ GRP+R+
Sbjct: 66 ERALDTMNFEVIKGRPIRI 84
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ + +R F +GT+ ++ M ++G FV SP
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKV-MTEGGHSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED +R +F G L +++ M R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPKPFATF---NLF 198
G+ +EA A++ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + SA+V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVSTKPLYVA 366
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + ++ +RG FV + + A A+ + R + V + K ++
Sbjct: 119 FSAFGNILSCKV-VCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ K N++I N + K LRE F + G + +S +V+ D+ RS G+G
Sbjct: 178 ERELE-YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG-NTLSVKVMM-DDTGRSRGFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
FV++ + + A+ A+S GK GR + V
Sbjct: 235 FVNYGNHEEAQKAVSEMNGKEVNGRMIYVG 264
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250
P A+ L++ +L + L E F G ++S V RRS GY +++F+ A
Sbjct: 9 PLAS--LYVGDLHPDVTEAMLYEKFSPAG-PIMSIRVCRDIATRRSLGYAYINFQQPADA 65
Query: 251 ETAISAFQGKLFMGRPLRV 269
E A+ ++ GRP+R+
Sbjct: 66 ERALDTMNFEVIKGRPIRI 84
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ + +R F +GT+ ++ M ++G FV SP
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T E+ LF Q+G ++ L ++ + +G FV + A A+
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEE 290
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L EF+ + L V A+ K K + + + A F NLFI NL + L
Sbjct: 291 LNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKL 350
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F G +++ + D S G+GFV F S + A A++ ++ G+PL VA
Sbjct: 351 KEEFAPYG--TITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVA 407
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIAN 201
G A+V + A+ L E GR ++ +++ P ++ K + N+FI N
Sbjct: 92 GYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERD-----PAIRKK--GSGNIFIKN 144
Query: 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261
L K L E F + G +V+S +V +N S G+GFV FK + A+ AI A G L
Sbjct: 145 LHPAIDNKALHETFSTFG-EVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGML 202
Query: 262 FMGRPLRVA 270
G + VA
Sbjct: 203 MNGLEVYVA 211
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G VL ++++ +RG FV +A A+ + G +
Sbjct: 150 DNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVY 209
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + KK+ ++ N+++ N+ E ++ + F S+ ++VSA + D
Sbjct: 210 V-AMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLF-SQYGEIVSA-ALEKDA 266
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274
+ G+GFV+F A A+ GK F + L V +++
Sbjct: 267 EGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQK 308
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
++ L +N+ + E ++ F +GT+ + + ++G FV SP+EAT
Sbjct: 330 KFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATK 389
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ G+ L V A+ K
Sbjct: 390 AMTEKNQQIVAGKPLYVAIAQRK 412
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 26/187 (13%)
Query: 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
+L N+ + ++RALFE++GTV++ ++ KN FV M + + A+ NL
Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDV---VKN----YGFVHMETEQQGRDAIQNL 60
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
Y +KV AK ++ P T +F+ NL+ + RA ++RE F G
Sbjct: 61 NGYTLNEFAIKVEAAKSRRAPNTP--------TTKIFVGNLTDKTRAPEVRELFQKYGT- 111
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
VV +++ + YGFV + AI G++ G+PL+V S +R++ K
Sbjct: 112 VVECDIVRN--------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS--TSRVRPK 161
Query: 282 EGLHSDE 288
G+ E
Sbjct: 162 PGMGDPE 168
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252
TF LFI NL + +A +LR F G VV +V+ + YGFV ++++
Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGT-VVECDVVKN--------YGFVHMETEQQGRD 55
Query: 253 AISAFQG 259
AI G
Sbjct: 56 AIQNLNG 62
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ ++ E+ LF ++G + L S+ + RG FV A A++
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L EF+G+ L V A+ K K + + + A + NLF+ NL + L
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+E F G + SA+V+ D S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 339 KEEFAPFGT-ITSAKVM-RDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV--NYAKI 178
F G +L +++ +RG FV + +A A+ ++ + + V + +K
Sbjct: 146 FSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKK 205
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++ V+ K F N+++ N+ E ++ E F G +++ V+ D+ + G
Sbjct: 206 DRQSKLEEVKAK-FT--NVYVKNIDQETSQEEFEELFGKYGK--ITSAVLEKDSEGKLRG 260
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS-RQFARLQ 279
+GFV+F+ A A+ F G+ L V + +++ RLQ
Sbjct: 261 FGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQ 302
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + E ++ F GT+ ++ +RG FV +P+EAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATK 377
Query: 157 ALNNLESYEFEGRTLKVNYAKIKK 180
A+ G+ L V A+ K+
Sbjct: 378 AITEKNQQIVAGKPLYVAIAQRKE 401
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEA 154
EE+Y T L +N+ + + +R F + G ++ + ++ RG AFV +P++A
Sbjct: 197 EEKY--TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKK------KNPFPPV--QPKPFATF-NLFIANLSFE 205
A + +F + L V A+ K + F + K A N+++ N++
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 206 ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265
++LR+ F G +++ + D +S G+GFV F + + A A+ F G++F G+
Sbjct: 315 VTEEELRKHFSQCG--TITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGK 372
Query: 266 PLRVAPSRQ 274
PL VA +++
Sbjct: 373 PLYVAIAQK 381
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 13/183 (7%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+P + T+ ++ +F++ G ++ +++ ++RG FV D A AA+ L S
Sbjct: 117 KNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTI 176
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
+ + V K KK V+P+ T NL++ NL + LRE F G V A
Sbjct: 177 VADKEIYV--GKFMKKT--DRVKPEEKYT-NLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK------LFMGRPLRVAPSRQFARLQ 279
I D R GY FV+F + + A A G L++GR + A Q R Q
Sbjct: 232 --IAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289
Query: 280 TKE 282
KE
Sbjct: 290 FKE 292
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 92 EQREEEYSKTRLVAQ-------NVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLA 144
EQ +E++ + +++A+ NV T E++R F Q GT+ +L K +++G
Sbjct: 288 EQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFG 347
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
FV +P+EA A+ F G+ L V A+ K+
Sbjct: 348 FVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKE 383
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T ++ LF G + I L ++ +++G FV + A A+
Sbjct: 248 TNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEE 307
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + V+ + + + NLF+ NL + ++ L
Sbjct: 308 LNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKL 367
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F + + +++ + D+ +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 368 EEEF--KPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVA 424
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 7/170 (4%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++++ +++ FV + + A AA+ ++ R +
Sbjct: 167 DNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVY 226
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
V + KK+ ++ N+++ N+ K+ E F G +++ + D
Sbjct: 227 VG-KHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK--ITSIYLEKDA 283
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTKE 282
+S G+GFV+F+ + A A+ K G+ + V + Q R +T+E
Sbjct: 284 EGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRA-QKKRERTEE 332
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ E + F+ GT+ ++ + +++G FV +P+EAT
Sbjct: 347 KYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATK 406
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + G+ L V A+ K
Sbjct: 407 AITEMNQRMVNGKPLYVALAQRK 429
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHED-----IRALFEQHGTVLDIELSMHSKNRNRGLAFVT 147
+RE EY + NV + ED ++ +F G L +++ M + R+RG FV
Sbjct: 178 ERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVN 237
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYA--KIKK----KNPFPPVQPK---PFATFNLF 198
G+ +EA A+ + E GR + V A +I++ K F ++ + + NL+
Sbjct: 238 YGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLY 297
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL LR+ F G + S +V+ S G+GFV F S + A A++
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYG-TITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 259 GKLFMGRPLRVA 270
G++ +PL VA
Sbjct: 355 GRIVSTKPLYVA 366
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+RG FV + + A A+ + R + V + K +++ K N++I
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE-YGAKVMEFTNVYI 195
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
N + K L+E F + G + +S +V+ DN RS G+GFV++ + + A+ A++ G
Sbjct: 196 KNFGEDMDDKRLKEIFSAFG-NTLSVKVMM-DNSGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Query: 260 KLFMGRPLRVA 270
K GR + V
Sbjct: 254 KEVNGRMVYVG 264
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250
P A+ L+I +L + L E F S ++S V RRS GY +++F+ A
Sbjct: 9 PLAS--LYIGDLHPDVTEAMLYEKF-SPAGPIMSIRVCRDIATRRSLGYAYINFQQPADA 65
Query: 251 ETAISAFQGKLFMGRPLRV 269
E A+ ++ GRP+R+
Sbjct: 66 ERALDTMNFEVIKGRPIRI 84
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ + +R F +GT+ ++ M ++G FV SP
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKV-MTEGGHSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + E LF G + I L +++G FV + A A+
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L E G+ + V A+ K+ K + V+ + A + NLF+ NL ++ L
Sbjct: 293 LNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKL 352
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ D +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 353 EEEFKPFGT-ITSAKVMV-DEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVA 409
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ T E + F+ GT+ ++ + +++G FV +P+EAT
Sbjct: 332 KYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATK 391
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + + G+ L V A+ K
Sbjct: 392 AITEMNTRMINGKPLYVALAQRK 414
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L +N+ +T E + LF + G ++ L + + +G FV ++A A+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 161 LESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATF-----------NLFIANLSFEARAK 209
L E G L V A+ KKN V K + + NLF+ NL +
Sbjct: 279 LNDSELNGEKLYVGRAQ--KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269
L E F G + SA+V+ +N + S G+GFV F + + A AI+ ++ G+PL V
Sbjct: 337 KLEEEFAPYGT-ITSAKVMRTENGK-SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 270 A 270
A
Sbjct: 395 A 395
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 10/191 (5%)
Query: 82 DSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR 141
D AA +E + E S L ++ + + + +F G+V I + + +
Sbjct: 19 DDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 78
Query: 142 -GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIA 200
G A+V + A+ L +GR ++ +++ P ++ K + N+FI
Sbjct: 79 LGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD-----PSLRKK--GSGNIFIK 131
Query: 201 NLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
NL + K L + F G D++S+++ +N + S G+GFV F+ + A+ AI A G
Sbjct: 132 NLHPDIDNKALYDTFSVFG-DILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 261 LFMGRPLRVAP 271
L G+ + VAP
Sbjct: 190 LLNGQEIYVAP 200
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 107 NVPWTSTHEDI--RALFEQH---GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161
N+ + H DI +AL++ G +L +++ +++G FV A A++ L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 ESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221
G+ + V +K+ + K T NL++ N++ E + +E F G
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-NLYVKNINSETTDEQFQELFAKFG-P 244
Query: 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+VSA + D + G+GFV+++ + A A+ A KL++GR
Sbjct: 245 IVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 293
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + E + F +GT+ ++ +++G FV +P+EAT
Sbjct: 318 KYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATK 377
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ G+ L V A+ K
Sbjct: 378 AITEKNQQIVAGKPLYVAIAQRK 400
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ LF Q G L +++ +++G FV+ ++A A+ + E G+ + V
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + + + NL+I NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ D RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G AFV + + A A+ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N E + L+E F S+ +S +V+ D +S G+
Sbjct: 178 EREAELGAKAKEFT--NVYIKNFGEEVDDESLKELF-SQFGKTLSVKVM-RDPNGKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGK------LFMGR 265
GFVS++ + A A+ GK +F+GR
Sbjct: 234 GFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
++R Y L +N+ T E +R F G++ ++ M R++G FV SP
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250
P A+ L++ +L + L E F G V+S V RRS GY +V+F+ A
Sbjct: 9 PMAS--LYVGDLHSDVTEAMLYEKFSPAG-PVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 251 ETAISAFQGKLFMGRPLRV 269
E A+ + G+P+R+
Sbjct: 66 ERALDTMNFDVIKGKPIRI 84
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEA 154
EE + +L + W +T E++ F + G ++D + + + R+RG FVT P
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
L N + +GRT+ K NP +PK + +F+ L DLR F
Sbjct: 62 NHVLQN-GPHTLDGRTIDP-----KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTF 115
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251
F G V +++ ++S G+GF+SF+ + E
Sbjct: 116 FNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 90 NTEQREEEYSK-TRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVT 147
N +Q+ EE + + + W+ E ++ FE G V+ + +R+RG +V
Sbjct: 156 NKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVD 215
Query: 148 MGSPDEATAALNNLESYEFEGRTLKVNYAKIK--------KKNPFPPVQPKPFATFNLFI 199
+ A A+ ++ E +GR + + + K KK P +P + LF+
Sbjct: 216 FENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP----SDTLFL 271
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
NLSF A + E F G +VVS + H + G+G+V F + + A+ A+ A QG
Sbjct: 272 GNLSFNADRDAIFELFAKHG-EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 330
Query: 260 KLFMGRPLRV 269
+ RP+R+
Sbjct: 331 EYIDNRPVRL 340
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ +T ++ L + G + L + N+G FV + ++A +
Sbjct: 216 TNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEE 275
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
L + EF+G+ L VN A+ K K + + + A + NLFI NL K L
Sbjct: 276 LNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKL 335
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA+V+ +N +S G+GFV F + + A AI+ ++ G+PL VA
Sbjct: 336 EEEFAPYGT-ITSAKVMTTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 11/185 (5%)
Query: 88 AVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNR-GLAFV 146
N E + E S + V P S + +F G V I + + + G A+V
Sbjct: 23 GTNEENQSETVSASLYVGDLDPSVS-EAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYV 81
Query: 147 TMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEA 206
D A A+ L +G+ ++ +++ P ++ K N+FI NL +
Sbjct: 82 NFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRD-----PSLRKK--GAGNIFIKNLHPDI 134
Query: 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266
K L + F G +++S++V D +S G+G+V F+ + A AI A G L G+
Sbjct: 135 DNKALYDTFSVFG-NILSSKVA-TDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQE 192
Query: 267 LRVAP 271
+ V P
Sbjct: 193 IYVGP 197
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + + + F +GT+ ++ +++G FV +P+EAT
Sbjct: 315 KYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATK 374
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ G+ L V A+ K
Sbjct: 375 AITEKNQQIVAGKPLYVAIAQRK 397
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 11/182 (6%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
+N E + SKT L+ +P T E+ ++LF G + +L ++ G
Sbjct: 17 GCVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 76
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 77 YGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSL 127
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
K++ + F S+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 128 PKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 186
Query: 263 MG 264
+G
Sbjct: 187 LG 188
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 284 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 343
Query: 179 KK 180
K+
Sbjct: 344 KQ 345
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ T ++ LF Q G + + L ++ RG FV + + A A++
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 161 LESYEFEGRTLKVNYA-----------------KIKKKNPFPPVQPKPFATFNLFIANLS 203
L E++G+ L V A K++K N + V NLFI NL
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV--------NLFIKNLQ 372
Query: 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263
E + L+ F + G +++ I D +S G+GFV + + + A A++ ++
Sbjct: 373 DEVDDERLKAEFSAFG--TITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
Query: 264 GRPLRVA 270
G+PL VA
Sbjct: 431 GKPLYVA 437
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 120 LFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V I + + R+ G A+V + ++ AL+ L +GR ++ ++
Sbjct: 99 LFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS-- 156
Query: 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238
+++P + T N+FI NL K L + F + G ++S +V D + G
Sbjct: 157 -QRDP----SLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG-KILSCKVAV-DELGNAKG 209
Query: 239 YGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
YGFV F S + A AI G L + + V
Sbjct: 210 YGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 10/160 (6%)
Query: 116 DIRAL---FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172
D +AL F G +L ++++ +G FV S + A AA+ ++ + +
Sbjct: 180 DNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVY 239
Query: 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIF--H 230
V + + ++ V+ N++I NL E ++ + F G ++ S ++ +
Sbjct: 240 VGH-HVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG-EITSLSLVKDQN 297
Query: 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
D PR G+GFV++ + + A+ A+ K + G+ L V
Sbjct: 298 DKPR---GFGFVNYANHECAQKAVDELNDKEYKGKKLYVG 334
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD 152
++ +Y L +N+ E ++A F GT+ ++ + +++G FV +P+
Sbjct: 356 EKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPE 415
Query: 153 EATAALNNLESYEFEGRTLKVNYAKIKK 180
EA A+ + G+ L V A+ K+
Sbjct: 416 EANKAVTEMNQRMLAGKPLYVALAQRKE 443
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
+L++ L L E F S G V S V RRS GY +V+F + + E A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIG-PVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 256 AFQGKLFMGRPLRV 269
L GRP R+
Sbjct: 140 ELNYTLIKGRPCRI 153
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Query: 91 TEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH--SKNRNRGLAFVTM 148
E E SKT L+ +P T E++++LF G + +L ++ ++ G FV
Sbjct: 56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNY 115
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARA 208
P +A A+N L + +T+KV+YA+ + NL+++ L
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQ 166
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
K+L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 167 KELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 325 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 381
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAI 254
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 255 SAFQGKLFMGRPLRVAPSR 273
+ G + ++V+ +R
Sbjct: 126 NTLNGLRLQTKTIKVSYAR 144
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS 150
E E SKT L+ +P T E++++LF G + +L ++ G FV
Sbjct: 58 ESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 151 PDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKD 210
P +A A+N L + +T+KV+YA+ + NL+++ L K+
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKE 168
Query: 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
L + F G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 169 LEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 311 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 367
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F G ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 145 FSQYG-RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPLGAA 195
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
Query: 179 KK 180
K+
Sbjct: 363 KQ 364
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L + + F S G D+ S +++ +S GYGFV++ A+ AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIG-DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F S+ ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 296 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
++++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 INNNCSSPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++L+ F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 92/192 (47%), Gaps = 16/192 (8%)
Query: 92 EQREEEYSKTR---LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTM 148
++R+ +KT+ + +N+ ++T +D++ F ++G + + + +++G FV
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query: 149 GSPDEATAALNNLESYEFEGRTLKVNYA----------KIKKKNPFPPVQPKPFATFNLF 198
+ D+A A+ +L ++F+ + V A +++ + K F + NL+
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADK-FQSSNLY 321
Query: 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258
+ NL + L+E F G V++ + D S G GFV+F + + A A+S
Sbjct: 322 VKNLDPSISDEKLKEIFSPFG--TVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 259 GKLFMGRPLRVA 270
GK+ +PL VA
Sbjct: 380 GKMIESKPLYVA 391
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 13/200 (6%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-SKNRNRG 142
+SA A + ++ T L ++ + T + F Q GTV+ + + R+ G
Sbjct: 19 TSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLG 78
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
+V +P +A A+ L G+ ++V Y+ ++P + N+FI NL
Sbjct: 79 YGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSH---RDP----SVRRSGAGNIFIKNL 131
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
K L + F S G ++VS +V D+ +S GYGFV + +++ A+ AI G L
Sbjct: 132 DESIDHKALHDTFSSFG-NIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189
Query: 263 MGRPLRVAPSRQFARLQTKE 282
+ + V P F R Q ++
Sbjct: 190 NDKQVYVGP---FLRRQERD 206
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 15/162 (9%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ + H+ + F G ++ ++++ S +++G FV + + A A+ L
Sbjct: 129 KNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGML 188
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFAT-----FNLFIANLSFEARAKDLREFFISEGW 220
+ + V PF Q + N+++ NL+ DL+ F G
Sbjct: 189 LNDKQVYVG--------PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 221 DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
+++ V+ D +S G+GFV+F++ A A+ + G F
Sbjct: 241 --ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKF 280
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 90 NTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149
N ++ +++ + L +N+ + + E ++ +F GTV ++ ++G FV
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
+P+EAT A++ L E + L V A+ K+
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKE 397
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 10/182 (5%)
Query: 84 SSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRG 142
S +N + SKT L+ +P T E+ ++LF G + +L ++ G
Sbjct: 18 GSVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 77
Query: 143 LAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANL 202
FV P++A A+N L + + +T+KV+YA+ + NL++++L
Sbjct: 78 YGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSSL 128
Query: 203 SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262
K++ + F G + S ++ S G GF+ F + AE AI G+
Sbjct: 129 PKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKP 188
Query: 263 MG 264
+G
Sbjct: 189 LG 190
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 279 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 338
Query: 179 KK 180
K+
Sbjct: 339 KQ 340
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 148 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 101 TRLVAQNVP------WT---------STHEDIRALFEQHGTVLDIELSMH-SKNRNRGLA 144
T LV N+P W S + LF G V ++++ + N+ +G
Sbjct: 275 TSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 334
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
FVTM + DEA A+ +L Y R L+V++
Sbjct: 335 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 365
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++ R F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F S
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
+ ++++ ++ S G GF+ F + AE AI G+
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 101 TRLVAQNVP------WT---------STHEDIRALFEQHGTVLDIELSMH-SKNRNRGLA 144
T LV N+P W S + LF G V ++++ + N+ +G
Sbjct: 282 TSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 341
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
FVTM + DEA A+ +L Y R L+V++
Sbjct: 342 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 372
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++ R F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
+ ++ L +Q+G + +I + K +++G F S + A + N F G+ +
Sbjct: 202 DQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAG 261
Query: 175 YA--KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232
A KI+++ + NL+I N+ LRE F S+ + SA V+ D
Sbjct: 262 RAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVF-SQFGTITSAIVMKDDK 320
Query: 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
S G+GFV + + A A++ G++ +PL VA
Sbjct: 321 ATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVA 358
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
Query: 106 QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165
+N+ H+ + F G +L ++ N ++G FV + + A A+ +
Sbjct: 103 KNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMM 162
Query: 166 FEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA 225
G+ + V K K+ QP N+F NLS + L+E + + ++
Sbjct: 163 INGQKVFVGPFKSSKERG----QPTEVKFTNVFFKNLSEDVGPDQLKELL--QQYGEITN 216
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267
I D+ +S G+GF +F+S + A+ + GK+F G+P+
Sbjct: 217 ITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 120 LFEQHGTVLDIELSMHSKNRNRGL--AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177
+F Q G V +I + + R R L A+V + +A AL+ L + G+ ++ +++
Sbjct: 29 IFNQVGLVSNIRVCRDTNTR-RSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQ 87
Query: 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSA 237
++P + N+FI NL K L + F + G +++S +V+ D+ S
Sbjct: 88 ---RDP----SLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-NILSCKVV-TDDGNSSK 138
Query: 238 GYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271
G+GFV +++++ A+ AI+ G + G+ + V P
Sbjct: 139 GFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDE 153
E +Y L +N+ + ++ +R +F Q GT+ I + ++G FV +PDE
Sbjct: 278 ETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDE 337
Query: 154 ATAALNNLESYEFEGRTLKVNYAKIK 179
AT A+ + + L V A+ K
Sbjct: 338 ATRAVTEMNGRMIGTKPLYVALAQRK 363
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAA 157
SKT L+ +P T E+ R+LF G + +L ++ G FV P +A A
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 158 LNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS 217
+N L + +T+KV+YA+ + NL+++ L K+L + F
Sbjct: 109 INTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 218 EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260
G ++++ ++ S G GF+ F + AE AI G+
Sbjct: 160 YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 101 TRLVAQNVP------WT---------STHEDIRALFEQHGTVLDIELSMH-SKNRNRGLA 144
T LV N+P W S + LF G V ++++ + N+ +G
Sbjct: 287 TSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 346
Query: 145 FVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
FVTM + DEA A+ +L Y R L+V++
Sbjct: 347 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L ++ R F S G ++ S +++ +S GYGFV++ K AE AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ F Q+G L +++ ++RG FV+ ++A A++++ + G+ + V
Sbjct: 205 ERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F G + SA
Sbjct: 265 RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFG-SITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 121 FEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179
F G +L I + R+ G A+V P +A AL+ + +G+ +++ +++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ-- 88
Query: 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
++P + N+FI NL K L + F + G +++S +V+ +N S GY
Sbjct: 89 -RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDEN--GSKGY 140
Query: 240 GFVSFKSKKVAETAISAFQG------KLFMGR 265
GFV F++++ AE AI G K+F+GR
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFVGR 172
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G FV + + A A++ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E+F G +S +V+ D+ +S G+
Sbjct: 178 EREAELGARAKEFT--NVYIKNFGEDMDDERLKEWFGQYGA-ALSVKVMTDDH-GKSRGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
GFVSF+ + A+ A+ GK G+ + V +++ QT+
Sbjct: 234 GFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ R Y L +N+ E +R F G++ ++ M R++G FV SP
Sbjct: 285 QDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F G ++S V RRS GY +
Sbjct: 2 NPSAPSYP----MASLYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + G+P+R+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRI 84
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T L N P T DI LF +G V+D+ N NR +V M PDEA AL
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNAL-- 723
Query: 161 LESYEFEGRTLKVNY-AKIKKKNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFI 216
+ + L+ Y ++ +P P+ A + L++ N+ F+ KD+ FF
Sbjct: 724 ----QLHKKLLEEKYPIQVFISDPLRRT-PRSGAVYEGRELYVTNIDFKVNEKDVETFFR 778
Query: 217 SEGWDVVSAEVIFHDNPRR---SAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273
G V S + P+R G+G+V + + AE A+SA GK R L V S+
Sbjct: 779 DYG-QVESVRI-----PKRFNQHKGFGYVVMTTNQDAENALSA-AGKQLGNRVLNVVLSK 831
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 81 VDSSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNR 139
V+++ ++ V++ E+ SKT L+ +P T E++++LF G + +L +
Sbjct: 21 VNNNCSSPVDSGNTED--SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 140 NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFI 199
+ G FV P +A A+N L + +T+KV+YA+ + NL++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS---------IRDANLYV 129
Query: 200 ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259
+ L K+L + F G ++++ ++ S G GF+ F + AE AI G
Sbjct: 130 SGLPKTMTQKELEQLFSQYG-RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 260 K 260
+
Sbjct: 189 Q 189
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175
+F G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 295 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268
++L+ F S G ++ S +++ +S GYGFV++ K AE AI+ G + ++
Sbjct: 53 EELKSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 111
Query: 269 VAPSR 273
V+ +R
Sbjct: 112 VSYAR 116
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEA 154
SKT L+ +P T ++ ++LF G++ DIE +++ + G FV P++A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLF---GSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 155 TAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREF 214
A+N L + + +T+KV+YA+ + NL+++ L K++ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSAS---------IRDANLYVSGLPKTMSQKEMEQL 144
Query: 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
F G ++++ ++ S G GF+ F + AE AI G+ +PL A
Sbjct: 145 FSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPLGAA 195
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 120 LFEQHGTVLDIELSMH-SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178
LF G V ++++ + N+ +G FVTM + DEA A+ +L Y R L+V++
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
Query: 179 KK 180
K+
Sbjct: 363 KQ 364
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255
NL + L + + F S G D+ S +++ +S GYGFV++ A+ AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIG-DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 256 AFQGKLFMGRPLRVAPSR 273
G + ++V+ +R
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+P + ++ LF Q G +L +++ + +R FV +EA A+ +
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 161 LESYEFEGRTLKVNYA--KIKKKNPFPPV-------QPKPFATFNLFIANLSFEARAKDL 211
+ E GR L A +++++N + + + NL++ NL L
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
R+ F G + SA+V+ S G+GFV F S + A A++ G++ +PL VA
Sbjct: 311 RKEFSPYGV-ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L +++ ++ +RG FV + + A A+N + R + V + K ++
Sbjct: 119 FSTFGNILSCKVAC-DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240
+ + + N+++ NL + + L++ F S+ ++S +V+ DN S +G
Sbjct: 178 ERE-AELGARALEFTNIYVKNLPVDVDEQGLQDLF-SQFGKMLSVKVM-RDNSGHSRCFG 234
Query: 241 FVSFKSKKVAETAISAFQGKLFMGRPL 267
FV+F+ + A+ A+ GK GR L
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVA 250
P A+ L++ +L + L E F G ++S V RRS GY +++F+ A
Sbjct: 9 PLAS--LYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 251 ETAISAFQGKLFMGRPLRV 269
E A+ ++ G+P+R+
Sbjct: 66 ERALDTMNFEMLKGQPIRI 84
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ R Y L +N+ + + +R F +G + ++ M ++G FV SP
Sbjct: 285 QDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVGTKPLYVALAQRKEE 373
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160
T + +N+ + +F+ G V + L + ++RG FV + + A A+
Sbjct: 239 TNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKE 298
Query: 161 LESYEFEGRTLKVNYAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDL 211
+ E +G+ L V A+ K+ K + + + + + NLF+ NL ++ L
Sbjct: 299 MNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKL 358
Query: 212 REFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
E F G + SA V+ D+ +S G+GFV F S + A AI+ ++ G+PL VA
Sbjct: 359 EEEFKPFGT-ITSARVMV-DDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVA 415
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATA 156
+Y L +N+ + E + F+ GT+ + + +++G FV SP+EAT
Sbjct: 338 KYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATK 397
Query: 157 ALNNLESYEFEGRTLKVNYAKIK 179
A+ + +G+ L V A+ K
Sbjct: 398 AITEMNQRMIQGKPLYVALAQRK 420
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174
E ++ +F ++G L +++ +++G FV+ ++A A++ + + G+++ V
Sbjct: 205 ERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVG 264
Query: 175 YAKIKK------KNPFPPVQPKPFATF---NLFIANLSFEARAKDLREFFISEGWDVVSA 225
A+ K K F ++ + NL++ NL + LR+ F+ G + SA
Sbjct: 265 RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFG-TITSA 323
Query: 226 EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270
+V+ RS G+GFV F S + A A++ G++ +PL VA
Sbjct: 324 KVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 22/164 (13%)
Query: 114 HEDIR--ALFEQ---HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167
H+D+ L+E+ G +L I + R+ G A+V P +A AL+ + +
Sbjct: 19 HQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 78
Query: 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227
GR +++ +++ ++P + N+FI NL K L + F + G +++S +V
Sbjct: 79 GRPVRIMWSQ---RDP----SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKV 130
Query: 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQG------KLFMGR 265
+ +N S GYGFV F++++ AE AI G K+F+GR
Sbjct: 131 VCDEN--GSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR 172
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 121 FEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180
F G +L ++ + +N ++G FV + + A A++ + R + V K +K
Sbjct: 119 FSAFGNILSCKV-VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 181 KNPFP-PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY 239
+ + K F N++I N + + L+E F G +S +V+ DN +S G+
Sbjct: 178 EREAELGARAKEFT--NVYIKNFGDDMNDERLKEMFGKYG-PALSVKVMTDDN-GKSKGF 233
Query: 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281
GFVSF+ + A+ A+ GK G+ + V +++ QT+
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241
NP P P +L++ +L + L E F G ++S V RRS GY +
Sbjct: 2 NPSAPSYP----MASLYVGDLHQDVTEAMLYEKFSPAG-PILSIRVCRDMITRRSLGYAY 56
Query: 242 VSFKSKKVAETAISAFQGKLFMGRPLRV 269
V+F+ AE A+ + GRP+R+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGRPVRI 84
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 92 EQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151
+ R Y L +N+ E +R F GT+ ++ M R++G FV SP
Sbjct: 285 QDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSP 343
Query: 152 DEATAALNNLESYEFEGRTLKVNYAKIKKK 181
+EAT A+ + + L V A+ K++
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,879,206
Number of Sequences: 539616
Number of extensions: 4399916
Number of successful extensions: 14038
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 12366
Number of HSP's gapped (non-prelim): 1630
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)