Query 021890
Match_columns 306
No_of_seqs 272 out of 2390
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 8.1E-35 1.8E-39 262.0 21.9 174 96-279 103-279 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.3E-34 1.4E-38 260.2 22.8 177 100-277 3-351 (352)
3 TIGR01645 half-pint poly-U bin 100.0 2.3E-34 5.1E-39 271.9 19.4 176 100-276 107-285 (612)
4 TIGR01622 SF-CC1 splicing fact 100.0 5.6E-31 1.2E-35 248.8 22.3 178 96-275 85-266 (457)
5 KOG0148 Apoptosis-promoting RN 100.0 2.9E-31 6.3E-36 220.4 16.0 171 100-277 62-240 (321)
6 KOG0144 RNA-binding protein CU 100.0 1.9E-30 4.1E-35 227.9 14.5 175 98-282 32-213 (510)
7 TIGR01628 PABP-1234 polyadenyl 100.0 9.9E-30 2.1E-34 246.0 20.8 168 102-278 2-170 (562)
8 TIGR01628 PABP-1234 polyadenyl 100.0 2.3E-29 5E-34 243.4 20.9 178 98-277 176-366 (562)
9 KOG0131 Splicing factor 3b, su 100.0 1.1E-29 2.3E-34 199.7 12.7 173 98-279 7-181 (203)
10 KOG0117 Heterogeneous nuclear 100.0 1E-28 2.2E-33 217.9 18.3 176 98-282 81-338 (506)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 2.8E-28 6.2E-33 230.4 21.6 172 99-278 57-310 (578)
12 KOG0145 RNA-binding protein EL 100.0 7.2E-29 1.6E-33 205.0 13.9 171 97-277 38-211 (360)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.4E-28 1.2E-32 228.9 22.0 185 100-294 2-194 (481)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.9E-28 2.1E-32 229.7 21.6 175 96-277 171-377 (509)
15 KOG0145 RNA-binding protein EL 100.0 6.7E-28 1.5E-32 199.3 15.4 192 83-275 110-358 (360)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.6E-27 5.6E-32 224.3 21.3 171 98-275 273-480 (481)
17 KOG0127 Nucleolar protein fibr 100.0 1.5E-27 3.2E-32 215.1 16.8 178 101-280 6-201 (678)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.2E-26 2.5E-31 222.3 23.2 176 98-274 293-501 (509)
19 KOG0127 Nucleolar protein fibr 99.9 3.4E-26 7.4E-31 206.3 18.2 177 100-277 117-380 (678)
20 KOG0109 RNA-binding protein LA 99.9 1.6E-26 3.4E-31 194.1 10.8 152 102-280 4-155 (346)
21 KOG0124 Polypyrimidine tract-b 99.9 2.5E-26 5.4E-31 198.2 9.2 194 100-301 113-311 (544)
22 TIGR01622 SF-CC1 splicing fact 99.9 3.8E-24 8.2E-29 202.3 21.4 170 100-274 186-447 (457)
23 KOG0123 Polyadenylate-binding 99.9 6.4E-24 1.4E-28 192.4 17.4 155 102-279 3-157 (369)
24 KOG0146 RNA-binding protein ET 99.9 1.7E-24 3.8E-29 179.8 9.8 178 99-277 18-367 (371)
25 KOG0110 RNA-binding protein (R 99.9 9.4E-24 2E-28 196.2 14.6 176 100-276 515-694 (725)
26 KOG0144 RNA-binding protein CU 99.9 1.1E-23 2.3E-28 185.6 11.7 178 99-277 123-506 (510)
27 KOG0148 Apoptosis-promoting RN 99.9 2.3E-23 4.9E-28 173.5 11.3 141 97-276 3-143 (321)
28 KOG0147 Transcriptional coacti 99.9 1.8E-23 3.8E-28 189.6 7.4 184 94-279 173-362 (549)
29 KOG0123 Polyadenylate-binding 99.9 4.2E-22 9.1E-27 180.6 15.2 173 100-277 76-248 (369)
30 KOG4205 RNA-binding protein mu 99.9 1.2E-22 2.6E-27 178.1 10.9 175 99-279 5-180 (311)
31 KOG0105 Alternative splicing f 99.9 5.1E-21 1.1E-25 151.1 16.6 155 99-263 5-176 (241)
32 TIGR01645 half-pint poly-U bin 99.9 2.9E-20 6.2E-25 176.5 22.0 80 99-178 203-283 (612)
33 KOG4206 Spliceosomal protein s 99.8 1.2E-18 2.6E-23 142.7 16.3 166 100-273 9-220 (221)
34 KOG0147 Transcriptional coacti 99.8 2.6E-19 5.7E-24 162.7 12.9 167 100-272 278-525 (549)
35 KOG1548 Transcription elongati 99.8 1E-17 2.2E-22 144.4 17.0 179 98-281 132-358 (382)
36 PLN03134 glycine-rich RNA-bind 99.8 7.2E-18 1.6E-22 133.8 12.9 84 98-181 32-116 (144)
37 KOG4211 Splicing factor hnRNP- 99.8 1.7E-17 3.7E-22 149.1 15.7 172 99-276 9-183 (510)
38 PLN03134 glycine-rich RNA-bind 99.8 6.8E-18 1.5E-22 134.0 10.8 84 193-277 33-116 (144)
39 KOG4212 RNA-binding protein hn 99.7 8.1E-17 1.8E-21 142.5 16.1 176 100-277 44-296 (608)
40 KOG0106 Alternative splicing f 99.7 6E-18 1.3E-22 140.0 8.2 156 101-272 2-168 (216)
41 KOG1457 RNA binding protein (c 99.7 4.5E-16 9.6E-21 126.8 15.7 161 98-263 32-274 (284)
42 KOG0110 RNA-binding protein (R 99.7 1.4E-16 3E-21 148.8 14.0 172 96-273 381-596 (725)
43 PF00076 RRM_1: RNA recognitio 99.7 1.2E-16 2.7E-21 110.9 9.2 70 103-172 1-70 (70)
44 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.2E-16 7E-21 143.3 11.4 82 99-180 268-350 (352)
45 KOG0121 Nuclear cap-binding pr 99.7 2.2E-16 4.8E-21 117.7 7.0 84 95-178 31-115 (153)
46 KOG1190 Polypyrimidine tract-b 99.7 5.3E-15 1.1E-19 130.2 16.3 166 100-274 297-490 (492)
47 COG0724 RNA-binding proteins ( 99.6 2.3E-15 4.9E-20 131.9 13.4 155 100-255 115-285 (306)
48 TIGR01659 sex-lethal sex-letha 99.6 5.8E-16 1.2E-20 139.9 9.3 83 193-276 106-188 (346)
49 KOG0124 Polypyrimidine tract-b 99.6 4E-15 8.8E-20 129.2 13.7 177 94-271 204-531 (544)
50 PF00076 RRM_1: RNA recognitio 99.6 1.6E-15 3.4E-20 105.3 9.1 70 197-268 1-70 (70)
51 KOG0122 Translation initiation 99.6 8E-16 1.7E-20 127.0 8.8 82 193-275 188-269 (270)
52 PF14259 RRM_6: RNA recognitio 99.6 1.8E-15 3.9E-20 105.3 9.2 70 103-172 1-70 (70)
53 KOG0122 Translation initiation 99.6 1.3E-15 2.7E-20 125.8 9.3 82 98-179 187-269 (270)
54 KOG0120 Splicing factor U2AF, 99.6 2.6E-15 5.7E-20 138.3 12.3 177 97-274 286-491 (500)
55 KOG1190 Polypyrimidine tract-b 99.6 3.1E-14 6.6E-19 125.4 16.2 185 100-294 150-392 (492)
56 KOG0149 Predicted RNA-binding 99.6 1.6E-15 3.4E-20 124.9 7.4 80 98-178 10-90 (247)
57 TIGR01648 hnRNP-R-Q heterogene 99.6 4.1E-15 8.9E-20 141.3 11.0 116 100-223 233-369 (578)
58 KOG0125 Ataxin 2-binding prote 99.6 4.1E-15 9E-20 127.5 9.8 83 97-180 93-175 (376)
59 PLN03120 nucleic acid binding 99.6 9.3E-15 2E-19 124.2 10.3 77 100-179 4-80 (260)
60 KOG0107 Alternative splicing f 99.6 8.5E-15 1.8E-19 115.2 7.9 78 100-181 10-87 (195)
61 PF14259 RRM_6: RNA recognitio 99.6 1.8E-14 3.9E-19 100.2 8.7 70 197-268 1-70 (70)
62 KOG0129 Predicted RNA-binding 99.5 1.6E-13 3.4E-18 124.7 15.4 156 97-256 256-432 (520)
63 KOG0125 Ataxin 2-binding prote 99.5 3E-14 6.5E-19 122.3 9.7 86 194-282 96-181 (376)
64 KOG0149 Predicted RNA-binding 99.5 1.4E-14 3E-19 119.3 7.3 82 194-277 12-93 (247)
65 PLN03213 repressor of silencin 99.5 2.8E-14 6E-19 128.4 9.7 80 97-179 7-88 (759)
66 KOG1365 RNA-binding protein Fu 99.5 2.3E-14 5E-19 125.2 8.9 171 101-273 162-360 (508)
67 KOG0121 Nuclear cap-binding pr 99.5 2E-14 4.3E-19 107.3 7.1 92 194-286 36-128 (153)
68 KOG4207 Predicted splicing fac 99.5 1.4E-14 3.1E-19 116.7 6.6 83 193-276 12-94 (256)
69 smart00362 RRM_2 RNA recogniti 99.5 1.2E-13 2.7E-18 95.4 9.7 72 102-174 1-72 (72)
70 KOG0114 Predicted RNA-binding 99.5 8.3E-14 1.8E-18 100.2 8.8 81 97-179 15-95 (124)
71 KOG0126 Predicted RNA-binding 99.5 1.7E-15 3.8E-20 119.6 0.2 81 99-179 34-115 (219)
72 KOG4212 RNA-binding protein hn 99.5 4.6E-13 9.9E-18 119.0 15.2 76 100-175 215-290 (608)
73 KOG0113 U1 small nuclear ribon 99.5 8.7E-14 1.9E-18 118.1 9.8 83 98-180 99-182 (335)
74 PLN03121 nucleic acid binding 99.5 1.2E-13 2.5E-18 115.7 10.3 77 100-179 5-81 (243)
75 PLN03120 nucleic acid binding 99.5 9.5E-14 2.1E-18 118.1 9.8 78 194-276 4-81 (260)
76 PLN03213 repressor of silencin 99.5 1.2E-13 2.7E-18 124.3 10.1 79 193-276 9-89 (759)
77 KOG0113 U1 small nuclear ribon 99.5 1.7E-13 3.6E-18 116.4 10.2 86 190-276 97-182 (335)
78 KOG0114 Predicted RNA-binding 99.5 2E-13 4.3E-18 98.2 8.2 82 194-279 18-99 (124)
79 KOG4207 Predicted splicing fac 99.5 6.7E-14 1.5E-18 112.9 6.5 80 99-178 12-92 (256)
80 KOG0117 Heterogeneous nuclear 99.5 6.1E-13 1.3E-17 118.6 13.0 125 149-279 42-168 (506)
81 KOG0107 Alternative splicing f 99.5 1.2E-13 2.6E-18 108.7 7.3 78 194-277 10-87 (195)
82 smart00362 RRM_2 RNA recogniti 99.5 4.9E-13 1.1E-17 92.4 9.3 72 196-270 1-72 (72)
83 cd00590 RRM RRM (RNA recogniti 99.5 7.6E-13 1.7E-17 91.9 10.3 74 102-175 1-74 (74)
84 KOG0111 Cyclophilin-type pepti 99.5 5.6E-14 1.2E-18 114.3 4.8 85 194-279 10-94 (298)
85 KOG0126 Predicted RNA-binding 99.4 7.5E-15 1.6E-19 116.1 -0.8 83 194-277 35-117 (219)
86 smart00360 RRM RNA recognition 99.4 6.4E-13 1.4E-17 91.4 8.9 70 105-174 1-71 (71)
87 smart00360 RRM RNA recognition 99.4 6.8E-13 1.5E-17 91.3 9.0 71 199-270 1-71 (71)
88 KOG0130 RNA-binding protein RB 99.4 2.8E-13 6.1E-18 102.1 6.5 85 97-181 69-154 (170)
89 KOG0120 Splicing factor U2AF, 99.4 4.7E-13 1E-17 123.5 8.3 176 97-279 172-373 (500)
90 KOG0130 RNA-binding protein RB 99.4 5.2E-13 1.1E-17 100.6 6.8 85 192-277 70-154 (170)
91 KOG0108 mRNA cleavage and poly 99.4 5.4E-13 1.2E-17 122.4 8.4 80 101-180 19-99 (435)
92 KOG0108 mRNA cleavage and poly 99.4 7E-13 1.5E-17 121.7 9.0 82 195-277 19-100 (435)
93 COG0724 RNA-binding proteins ( 99.4 1.2E-12 2.6E-17 114.5 10.3 80 194-274 115-194 (306)
94 KOG0111 Cyclophilin-type pepti 99.4 2.9E-13 6.3E-18 110.2 5.2 85 97-181 7-92 (298)
95 PLN03121 nucleic acid binding 99.4 2.5E-12 5.3E-17 107.8 9.8 77 194-275 5-81 (243)
96 KOG0131 Splicing factor 3b, su 99.4 9.4E-13 2E-17 104.4 6.9 79 194-273 9-87 (203)
97 cd00590 RRM RRM (RNA recogniti 99.4 5.4E-12 1.2E-16 87.5 10.0 74 196-271 1-74 (74)
98 KOG0226 RNA-binding proteins [ 99.4 3.4E-12 7.4E-17 106.2 9.7 173 101-277 97-272 (290)
99 KOG1456 Heterogeneous nuclear 99.4 1E-11 2.2E-16 108.6 13.0 166 100-278 31-202 (494)
100 smart00361 RRM_1 RNA recogniti 99.4 4.4E-12 9.6E-17 88.1 8.6 62 208-270 2-70 (70)
101 KOG1456 Heterogeneous nuclear 99.4 5.7E-11 1.2E-15 103.9 17.0 162 97-264 284-474 (494)
102 PF13893 RRM_5: RNA recognitio 99.3 6.6E-12 1.4E-16 83.2 8.0 56 117-176 1-56 (56)
103 PF13893 RRM_5: RNA recognitio 99.3 1.2E-11 2.5E-16 82.0 7.9 56 211-272 1-56 (56)
104 KOG4454 RNA binding protein (R 99.3 6.2E-13 1.3E-17 108.3 1.1 149 100-269 9-157 (267)
105 KOG0112 Large RNA-binding prot 99.3 1.7E-12 3.7E-17 124.4 3.9 168 94-279 366-535 (975)
106 KOG0105 Alternative splicing f 99.3 6.2E-12 1.3E-16 99.9 6.1 78 194-275 6-83 (241)
107 KOG4211 Splicing factor hnRNP- 99.2 4.9E-11 1.1E-15 107.9 11.0 168 99-271 102-354 (510)
108 KOG0132 RNA polymerase II C-te 99.2 1.1E-10 2.5E-15 110.5 13.6 108 100-216 421-528 (894)
109 smart00361 RRM_1 RNA recogniti 99.2 3.9E-11 8.5E-16 83.3 8.0 61 114-174 2-70 (70)
110 KOG0415 Predicted peptidyl pro 99.2 2.1E-11 4.6E-16 105.9 6.9 85 192-277 237-321 (479)
111 KOG4210 Nuclear localization s 99.2 1.3E-11 2.8E-16 108.4 4.6 177 99-277 87-266 (285)
112 KOG0128 RNA-binding protein SA 99.2 2.4E-12 5.2E-17 123.0 -0.3 151 99-277 666-817 (881)
113 KOG4208 Nucleolar RNA-binding 99.2 8.4E-11 1.8E-15 95.3 8.2 82 194-275 49-130 (214)
114 KOG0146 RNA-binding protein ET 99.2 3.8E-11 8.2E-16 100.7 6.0 89 94-182 279-368 (371)
115 KOG4206 Spliceosomal protein s 99.1 1.6E-10 3.4E-15 95.2 7.4 80 194-277 9-92 (221)
116 KOG0109 RNA-binding protein LA 99.1 7.8E-11 1.7E-15 100.0 5.4 79 97-182 75-153 (346)
117 KOG4208 Nucleolar RNA-binding 99.1 3.2E-10 7E-15 92.0 8.3 82 98-179 47-130 (214)
118 KOG0415 Predicted peptidyl pro 99.1 2.1E-10 4.5E-15 99.8 6.2 82 99-180 238-320 (479)
119 KOG1365 RNA-binding protein Fu 99.0 1.6E-09 3.4E-14 95.3 9.0 173 99-274 59-242 (508)
120 KOG4660 Protein Mei2, essentia 98.9 8.1E-10 1.7E-14 101.6 5.3 168 94-274 69-249 (549)
121 KOG4661 Hsp27-ERE-TATA-binding 98.9 5.8E-09 1.3E-13 96.0 10.1 85 95-179 400-485 (940)
122 KOG0533 RRM motif-containing p 98.9 4.7E-09 1E-13 89.2 9.0 85 97-181 80-164 (243)
123 KOG0132 RNA polymerase II C-te 98.9 2.4E-09 5.1E-14 101.8 7.7 76 194-276 421-496 (894)
124 KOG0153 Predicted RNA-binding 98.9 3.3E-09 7.2E-14 92.3 7.6 79 96-179 224-303 (377)
125 KOG0153 Predicted RNA-binding 98.9 9.2E-09 2E-13 89.6 8.3 80 190-276 224-304 (377)
126 KOG1457 RNA binding protein (c 98.9 2.1E-08 4.5E-13 82.4 9.7 86 194-279 34-122 (284)
127 KOG2193 IGF-II mRNA-binding pr 98.8 6.4E-10 1.4E-14 98.9 0.2 151 101-272 2-154 (584)
128 PF04059 RRM_2: RNA recognitio 98.8 6.2E-08 1.3E-12 70.8 8.9 83 195-277 2-89 (97)
129 KOG0116 RasGAP SH3 binding pro 98.8 2.4E-08 5.3E-13 91.5 8.4 81 98-179 286-367 (419)
130 KOG4205 RNA-binding protein mu 98.7 1.4E-08 3E-13 89.8 5.4 153 99-259 96-256 (311)
131 KOG4307 RNA binding protein RB 98.7 1.7E-07 3.6E-12 88.5 12.0 170 99-272 310-511 (944)
132 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.9E-08 8.5E-13 90.7 7.7 81 194-275 405-485 (940)
133 KOG4307 RNA binding protein RB 98.7 6.3E-08 1.4E-12 91.2 8.5 78 100-177 434-512 (944)
134 KOG4209 Splicing factor RNPS1, 98.7 3E-08 6.6E-13 84.5 5.9 85 94-179 95-180 (231)
135 KOG0533 RRM motif-containing p 98.7 7.8E-08 1.7E-12 81.8 7.9 82 194-277 83-164 (243)
136 KOG0226 RNA-binding proteins [ 98.6 4.5E-08 9.7E-13 81.9 4.6 81 97-177 187-268 (290)
137 KOG4209 Splicing factor RNPS1, 98.6 7.7E-08 1.7E-12 82.0 5.1 82 192-275 99-180 (231)
138 KOG4676 Splicing factor, argin 98.5 3.4E-08 7.5E-13 87.2 2.0 161 101-268 8-219 (479)
139 KOG0151 Predicted splicing reg 98.5 1.5E-07 3.1E-12 89.0 6.2 80 99-178 173-256 (877)
140 PF11608 Limkain-b1: Limkain b 98.5 6.4E-07 1.4E-11 62.5 7.4 69 195-273 3-75 (90)
141 KOG0116 RasGAP SH3 binding pro 98.5 2.9E-07 6.2E-12 84.6 6.8 81 195-277 289-369 (419)
142 PF04059 RRM_2: RNA recognitio 98.5 1.8E-06 3.8E-11 63.2 9.6 79 101-179 2-87 (97)
143 KOG0151 Predicted splicing reg 98.4 4.6E-07 9.9E-12 85.8 7.2 85 191-276 171-258 (877)
144 KOG4454 RNA binding protein (R 98.4 1.6E-07 3.6E-12 77.0 3.0 76 194-272 9-84 (267)
145 KOG0106 Alternative splicing f 98.4 2.8E-07 6.2E-12 76.8 4.2 73 196-277 3-75 (216)
146 KOG1548 Transcription elongati 98.4 1.2E-06 2.7E-11 76.5 8.2 83 193-277 133-223 (382)
147 KOG4660 Protein Mei2, essentia 98.4 2.4E-07 5.1E-12 85.6 4.0 72 191-268 72-143 (549)
148 KOG0128 RNA-binding protein SA 98.2 9.2E-08 2E-12 92.2 -3.7 165 97-263 568-735 (881)
149 PF11608 Limkain-b1: Limkain b 98.1 2.6E-05 5.6E-10 54.6 7.4 70 101-179 3-77 (90)
150 KOG4849 mRNA cleavage factor I 98.0 5.5E-06 1.2E-10 72.5 3.6 78 97-174 77-157 (498)
151 KOG0115 RNA-binding protein p5 98.0 2.3E-05 5.1E-10 66.0 7.1 103 152-272 5-111 (275)
152 PF08777 RRM_3: RNA binding mo 97.9 1.3E-05 2.9E-10 59.9 4.3 70 195-271 2-76 (105)
153 KOG1995 Conserved Zn-finger pr 97.9 9.9E-06 2.1E-10 71.5 4.0 83 194-277 66-156 (351)
154 COG5175 MOT2 Transcriptional r 97.8 5.8E-05 1.3E-09 66.0 6.7 82 98-179 112-203 (480)
155 PF08777 RRM_3: RNA binding mo 97.8 5.4E-05 1.2E-09 56.6 5.7 59 101-164 2-60 (105)
156 KOG1995 Conserved Zn-finger pr 97.7 2.8E-05 6E-10 68.7 4.0 84 97-180 63-155 (351)
157 KOG2314 Translation initiation 97.6 0.00022 4.8E-09 66.4 8.0 82 194-277 58-146 (698)
158 KOG4210 Nuclear localization s 97.6 4.2E-05 9.1E-10 67.5 2.9 81 101-182 186-267 (285)
159 KOG1855 Predicted RNA-binding 97.6 0.00035 7.6E-09 63.1 8.2 73 187-260 224-309 (484)
160 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00025 5.5E-09 45.9 5.1 52 101-158 2-53 (53)
161 KOG3152 TBP-binding protein, a 97.5 6.9E-05 1.5E-09 63.2 2.5 72 99-170 73-157 (278)
162 KOG3152 TBP-binding protein, a 97.5 6.9E-05 1.5E-09 63.2 2.5 72 194-266 74-157 (278)
163 KOG2314 Translation initiation 97.4 0.00034 7.4E-09 65.2 6.2 81 97-177 55-142 (698)
164 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00063 1.4E-08 50.1 6.5 78 99-178 5-91 (100)
165 KOG1855 Predicted RNA-binding 97.4 0.00017 3.6E-09 65.1 3.8 70 95-164 226-309 (484)
166 KOG0129 Predicted RNA-binding 97.4 0.00073 1.6E-08 62.6 7.9 62 99-160 369-432 (520)
167 KOG1996 mRNA splicing factor [ 97.3 0.00082 1.8E-08 57.9 7.2 66 207-273 299-365 (378)
168 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0016 3.5E-08 48.0 7.6 81 194-277 6-94 (100)
169 COG5175 MOT2 Transcriptional r 97.2 0.00072 1.6E-08 59.3 6.2 80 195-275 115-203 (480)
170 KOG4849 mRNA cleavage factor I 97.2 0.00031 6.8E-09 61.8 3.9 78 194-272 80-159 (498)
171 PF08952 DUF1866: Domain of un 97.2 0.0014 2.9E-08 51.4 6.8 57 115-179 51-107 (146)
172 KOG2416 Acinus (induces apopto 97.1 0.00039 8.5E-09 65.2 3.0 77 98-179 442-522 (718)
173 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0027 5.8E-08 41.1 6.0 52 195-254 2-53 (53)
174 KOG2202 U2 snRNP splicing fact 97.0 0.00035 7.6E-09 59.2 2.2 63 209-273 83-146 (260)
175 KOG2416 Acinus (induces apopto 97.0 0.00061 1.3E-08 64.0 3.7 82 189-276 439-523 (718)
176 KOG2202 U2 snRNP splicing fact 96.9 0.00044 9.5E-09 58.6 1.8 65 115-179 83-148 (260)
177 PF08952 DUF1866: Domain of un 96.9 0.0068 1.5E-07 47.5 8.0 75 190-274 23-106 (146)
178 KOG1996 mRNA splicing factor [ 96.9 0.0037 8E-08 54.0 6.9 65 114-178 300-366 (378)
179 KOG0112 Large RNA-binding prot 96.8 0.002 4.4E-08 63.3 5.7 80 96-180 451-532 (975)
180 PF10309 DUF2414: Protein of u 96.5 0.017 3.7E-07 38.5 6.5 55 195-257 6-62 (62)
181 KOG0804 Cytoplasmic Zn-finger 96.3 0.034 7.3E-07 51.0 9.7 68 100-168 74-142 (493)
182 KOG2193 IGF-II mRNA-binding pr 96.3 0.0048 1E-07 55.9 4.1 78 195-279 2-80 (584)
183 PF07576 BRAP2: BRCA1-associat 96.2 0.057 1.2E-06 40.6 9.1 68 195-264 14-81 (110)
184 KOG0115 RNA-binding protein p5 96.2 0.0067 1.5E-07 51.5 4.2 62 101-162 32-93 (275)
185 PF07576 BRAP2: BRCA1-associat 95.9 0.09 1.9E-06 39.5 8.9 68 100-168 13-81 (110)
186 PF08675 RNA_bind: RNA binding 95.8 0.057 1.2E-06 38.0 6.7 55 100-162 9-63 (87)
187 PF10567 Nab6_mRNP_bdg: RNA-re 95.8 0.45 9.8E-06 41.5 13.6 178 96-274 11-231 (309)
188 PF10309 DUF2414: Protein of u 95.8 0.077 1.7E-06 35.3 7.0 54 100-161 5-62 (62)
189 PF04847 Calcipressin: Calcipr 95.7 0.032 7E-07 46.0 6.2 63 113-180 8-72 (184)
190 KOG4676 Splicing factor, argin 95.5 0.018 3.9E-07 51.8 4.3 76 195-272 8-86 (479)
191 PF15023 DUF4523: Protein of u 95.5 0.14 3.1E-06 39.8 8.6 77 191-276 83-163 (166)
192 KOG2253 U1 snRNP complex, subu 95.5 0.022 4.8E-07 54.5 5.0 108 101-216 41-157 (668)
193 KOG2591 c-Mpl binding protein, 95.4 0.04 8.7E-07 51.8 6.4 87 150-258 146-233 (684)
194 KOG4285 Mitotic phosphoprotein 95.4 0.33 7.1E-06 42.5 11.3 73 100-179 197-270 (350)
195 PF15023 DUF4523: Protein of u 95.3 0.058 1.3E-06 41.9 5.9 73 99-178 85-161 (166)
196 KOG2068 MOT2 transcription fac 95.2 0.0073 1.6E-07 53.3 1.0 82 98-179 75-163 (327)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.041 8.9E-07 45.2 4.2 79 194-272 7-95 (176)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.041 9E-07 45.1 4.1 80 98-177 5-96 (176)
199 KOG0804 Cytoplasmic Zn-finger 94.7 0.084 1.8E-06 48.5 6.2 69 194-264 74-142 (493)
200 PF08675 RNA_bind: RNA binding 94.4 0.13 2.9E-06 36.2 5.4 55 194-258 9-63 (87)
201 KOG2135 Proteins containing th 94.3 0.024 5.2E-07 52.2 1.9 78 97-180 369-447 (526)
202 KOG2591 c-Mpl binding protein, 94.3 0.071 1.5E-06 50.2 4.9 72 98-175 173-248 (684)
203 KOG4574 RNA-binding protein (c 94.2 0.035 7.5E-07 54.7 2.8 76 197-279 301-378 (1007)
204 PF07292 NID: Nmi/IFP 35 domai 94.1 0.046 9.9E-07 39.2 2.6 72 144-216 1-74 (88)
205 PF04847 Calcipressin: Calcipr 93.5 0.24 5.2E-06 40.9 6.3 61 207-274 8-70 (184)
206 PF03880 DbpA: DbpA RNA bindin 92.9 0.59 1.3E-05 32.3 6.6 59 110-176 11-74 (74)
207 PF11767 SET_assoc: Histone ly 92.6 0.84 1.8E-05 30.9 6.7 55 111-173 11-65 (66)
208 KOG2068 MOT2 transcription fac 92.6 0.052 1.1E-06 48.1 1.1 81 195-276 78-164 (327)
209 KOG2135 Proteins containing th 92.4 0.13 2.9E-06 47.5 3.5 70 199-276 377-447 (526)
210 KOG2318 Uncharacterized conser 92.1 0.88 1.9E-05 43.4 8.5 127 97-271 171-304 (650)
211 KOG4574 RNA-binding protein (c 91.9 0.1 2.2E-06 51.5 2.3 74 102-180 300-375 (1007)
212 PF03880 DbpA: DbpA RNA bindin 90.5 1.2 2.6E-05 30.8 6.0 60 204-272 11-74 (74)
213 KOG2253 U1 snRNP complex, subu 88.4 0.58 1.3E-05 45.2 4.1 70 193-272 39-108 (668)
214 PF14111 DUF4283: Domain of un 88.3 1.2 2.7E-05 35.1 5.5 109 111-228 28-138 (153)
215 KOG4285 Mitotic phosphoprotein 87.6 2.4 5.2E-05 37.3 7.0 76 194-278 197-273 (350)
216 PF11767 SET_assoc: Histone ly 83.2 7.4 0.00016 26.3 6.3 55 205-269 11-65 (66)
217 KOG4410 5-formyltetrahydrofola 78.9 14 0.00029 32.5 7.9 47 101-152 331-378 (396)
218 KOG4410 5-formyltetrahydrofola 75.8 12 0.00026 32.7 6.8 47 195-247 331-377 (396)
219 KOG4019 Calcineurin-mediated s 74.5 5.4 0.00012 32.5 4.2 75 101-180 11-91 (193)
220 KOG4483 Uncharacterized conser 73.9 9.6 0.00021 35.0 6.0 66 194-267 391-456 (528)
221 KOG2891 Surface glycoprotein [ 72.7 2.6 5.7E-05 36.6 2.1 80 195-275 150-268 (445)
222 PF07530 PRE_C2HC: Associated 67.1 13 0.00027 25.3 4.2 64 209-275 2-65 (68)
223 PRK14548 50S ribosomal protein 66.6 21 0.00047 25.3 5.4 54 201-257 27-81 (84)
224 TIGR03636 L23_arch archaeal ri 63.9 27 0.00059 24.3 5.4 58 197-257 16-74 (77)
225 PF08734 GYD: GYD domain; Int 62.8 43 0.00093 24.1 6.5 49 207-259 21-69 (91)
226 smart00596 PRE_C2HC PRE_C2HC d 61.4 16 0.00035 24.8 3.7 62 209-273 2-63 (69)
227 KOG4483 Uncharacterized conser 60.3 19 0.00041 33.1 5.1 54 100-159 391-445 (528)
228 COG0018 ArgS Arginyl-tRNA synt 59.4 1.2E+02 0.0026 29.9 10.9 104 109-231 55-166 (577)
229 KOG4213 RNA-binding protein La 58.3 7.2 0.00016 31.7 1.9 63 93-160 104-169 (205)
230 PF10567 Nab6_mRNP_bdg: RNA-re 53.0 36 0.00078 30.1 5.4 83 193-276 14-109 (309)
231 PF15628 RRM_DME: RRM in Demet 52.9 32 0.0007 25.1 4.3 44 191-238 47-94 (103)
232 PF15513 DUF4651: Domain of un 51.2 41 0.00088 22.4 4.2 18 115-132 9-26 (62)
233 PF03468 XS: XS domain; Inter 49.4 24 0.00051 26.7 3.4 46 112-159 29-75 (116)
234 PRK14548 50S ribosomal protein 42.3 1.2E+02 0.0027 21.5 6.2 56 103-160 23-80 (84)
235 KOG2295 C2H2 Zn-finger protein 41.8 4.6 0.0001 38.5 -1.7 68 100-167 231-299 (648)
236 PRK11901 hypothetical protein; 39.0 2.2E+02 0.0047 25.8 8.2 62 97-163 242-306 (327)
237 PF07530 PRE_C2HC: Associated 38.8 83 0.0018 21.3 4.5 62 115-179 2-65 (68)
238 KOG4019 Calcineurin-mediated s 37.2 92 0.002 25.6 5.1 50 236-285 50-100 (193)
239 COG5638 Uncharacterized conser 37.1 49 0.0011 30.6 4.0 42 97-138 143-189 (622)
240 KOG1295 Nonsense-mediated deca 36.8 33 0.00072 31.4 2.9 69 195-263 8-78 (376)
241 PF11823 DUF3343: Protein of u 36.1 53 0.0011 22.3 3.3 25 238-262 2-26 (73)
242 PF02714 DUF221: Domain of unk 36.0 59 0.0013 29.1 4.5 33 144-178 1-33 (325)
243 PF09707 Cas_Cas2CT1978: CRISP 35.8 86 0.0019 22.4 4.3 47 101-149 26-72 (86)
244 KOG4008 rRNA processing protei 35.7 33 0.00072 29.3 2.5 35 96-130 36-70 (261)
245 COG0445 GidA Flavin-dependent 34.8 1.2E+02 0.0026 29.7 6.4 97 141-246 236-344 (621)
246 KOG2295 C2H2 Zn-finger protein 34.1 6.6 0.00014 37.5 -2.0 73 194-267 231-303 (648)
247 PTZ00191 60S ribosomal protein 32.8 1.3E+02 0.0029 23.7 5.3 57 197-256 84-141 (145)
248 TIGR03636 L23_arch archaeal ri 32.8 1.7E+02 0.0037 20.3 6.2 55 103-159 16-72 (77)
249 PF07292 NID: Nmi/IFP 35 domai 32.1 27 0.00059 25.0 1.3 34 96-136 48-81 (88)
250 KOG4365 Uncharacterized conser 31.7 11 0.00024 35.1 -1.0 81 195-277 4-84 (572)
251 KOG1295 Nonsense-mediated deca 28.8 64 0.0014 29.6 3.4 68 99-166 6-77 (376)
252 KOG2891 Surface glycoprotein [ 28.7 78 0.0017 27.7 3.7 36 98-133 147-194 (445)
253 KOG2187 tRNA uracil-5-methyltr 28.6 40 0.00087 32.4 2.1 43 237-279 63-105 (534)
254 PRK11230 glycolate oxidase sub 28.2 2.5E+02 0.0055 27.1 7.6 61 102-162 191-255 (499)
255 PF11823 DUF3343: Protein of u 28.1 93 0.002 21.1 3.4 28 142-169 2-29 (73)
256 COG5193 LHP1 La protein, small 27.6 28 0.00061 32.1 0.9 60 100-159 174-244 (438)
257 TIGR02542 B_forsyth_147 Bacter 25.8 77 0.0017 23.9 2.7 114 108-247 11-129 (145)
258 KOG0156 Cytochrome P450 CYP2 s 24.5 1.5E+02 0.0032 28.6 5.2 59 104-171 36-97 (489)
259 COG0030 KsgA Dimethyladenosine 23.7 1E+02 0.0023 26.9 3.7 33 101-133 96-128 (259)
260 cd04908 ACT_Bt0572_1 N-termina 22.9 2.2E+02 0.0048 18.4 8.5 58 197-261 6-63 (66)
261 COG5193 LHP1 La protein, small 22.8 36 0.00078 31.4 0.7 62 194-255 174-244 (438)
262 PF05189 RTC_insert: RNA 3'-te 22.7 3E+02 0.0066 19.9 5.9 50 196-245 12-65 (103)
263 cd04904 ACT_AAAH ACT domain of 22.5 2.5E+02 0.0055 18.9 5.7 51 113-163 13-65 (74)
264 PF03439 Spt5-NGN: Early trans 22.5 1E+02 0.0022 21.6 2.9 27 236-262 43-69 (84)
265 PRK11558 putative ssRNA endonu 22.4 1.6E+02 0.0036 21.5 3.9 49 101-151 28-76 (97)
266 PF02714 DUF221: Domain of unk 22.3 1E+02 0.0022 27.6 3.5 32 240-273 1-32 (325)
267 PF14893 PNMA: PNMA 21.2 1E+02 0.0022 28.0 3.2 53 99-151 17-72 (331)
268 PF11411 DNA_ligase_IV: DNA li 20.6 76 0.0017 18.6 1.5 16 110-125 19-34 (36)
269 PRK10905 cell division protein 20.4 3.4E+02 0.0073 24.5 6.1 61 98-162 245-307 (328)
270 KOG3424 40S ribosomal protein 20.3 4E+02 0.0086 20.3 5.8 21 231-252 64-84 (132)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.1e-35 Score=261.98 Aligned_cols=174 Identities=25% Similarity=0.384 Sum_probs=158.3
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.|++|+|+++. +++++|||||+|.++++|++|++.|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred eecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 021890 175 YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (306)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al 254 (306)
|+.+.... ....+|||+|||..+++++|+++|++| |.|+.|+|++|..+|+++|+|||+|.+.++|.+||
T Consensus 183 ~a~p~~~~---------~~~~~lfV~nLp~~vtee~L~~~F~~f-G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 183 YARPGGES---------IKDTNLYVTNLPRTITDDQLDTIFGKY-GQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred cccccccc---------cccceeEEeCCCCcccHHHHHHHHHhc-CCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 98754321 124679999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHhCCceeCC--eeEEEeeCcchhhhh
Q 021890 255 SAFQGKLFMG--RPLRVAPSRQFARLQ 279 (306)
Q Consensus 255 ~~l~g~~i~g--~~l~v~~a~~~~~~~ 279 (306)
+.||+..+.| +.|+|.+++...+..
T Consensus 253 ~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHhCCCccCCCceeEEEEECCcccccc
Confidence 9999998876 799999998765543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.3e-34 Score=260.22 Aligned_cols=177 Identities=28% Similarity=0.396 Sum_probs=154.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..+|||+|||+.+++++|+++|+.||+|.+|+|++++ +|+++|||||+|.+.++|++||+.|||..+.|+.|+|.|+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5789999999999999999999999999999999987 699999999999999999999999999999999999998864
Q ss_pred cCCCCC------------------------------------------CC------------------------------
Q 021890 179 KKKNPF------------------------------------------PP------------------------------ 186 (306)
Q Consensus 179 ~~~~~~------------------------------------------~~------------------------------ 186 (306)
...... ..
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~ 162 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEP 162 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 321000 00
Q ss_pred -----C-CCC----------------------------------------------------------------------
Q 021890 187 -----V-QPK---------------------------------------------------------------------- 190 (306)
Q Consensus 187 -----~-~~~---------------------------------------------------------------------- 190 (306)
. ...
T Consensus 163 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR01661 163 ITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQ 242 (352)
T ss_pred EEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccc
Confidence 0 000
Q ss_pred -----------------------CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 021890 191 -----------------------PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (306)
Q Consensus 191 -----------------------~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 247 (306)
...+.+|||+|||+.+++++|+++|++| |.|.+++|++|+.+|.++|||||+|.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f-G~v~~v~i~~d~~t~~skG~aFV~F~~~ 321 (352)
T TIGR01661 243 RASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF-GAVQNVKIIRDLTTNQCKGYGFVSMTNY 321 (352)
T ss_pred cCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeEcCCCCCccceEEEEECCH
Confidence 0011259999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 248 KVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 248 ~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
++|.+|+..|||..|+||.|+|.|+..+.+
T Consensus 322 ~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 322 DEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999999999999999999877543
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.3e-34 Score=271.90 Aligned_cols=176 Identities=20% Similarity=0.338 Sum_probs=155.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
.++||||||++.+++++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|||..|+|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 4679999999999999999999999999999999987 699999999999999999999999999999999999986543
Q ss_pred cCCCCC--CCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 021890 179 KKKNPF--PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 179 ~~~~~~--~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~ 256 (306)
...... ...........+|||+||++.+++++|+++|+.| |.|.+|++.+|+.+|.++|||||+|.+.++|.+|+..
T Consensus 187 ~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F-G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 187 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 221110 0011112234789999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hCCceeCCeeEEEeeCcchh
Q 021890 257 FQGKLFMGRPLRVAPSRQFA 276 (306)
Q Consensus 257 l~g~~i~g~~l~v~~a~~~~ 276 (306)
|||+.|+|+.|+|.++....
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999988654
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=5.6e-31 Score=248.80 Aligned_cols=178 Identities=21% Similarity=0.376 Sum_probs=156.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+.+++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+||. |+|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34557899999999999999999999999999999999987 58999999999999999999998 89999999999999
Q ss_pred eecccCCCCCC---CCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHH
Q 021890 175 YAKIKKKNPFP---PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251 (306)
Q Consensus 175 ~~~~~~~~~~~---~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~ 251 (306)
++......... ..........+|||+|||..+++++|+++|+.| |.|..|.++.+..+|.++|||||+|.+.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~-G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF-GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 87654322211 111111236889999999999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEeeCcch
Q 021890 252 TAISAFQGKLFMGRPLRVAPSRQF 275 (306)
Q Consensus 252 ~Al~~l~g~~i~g~~l~v~~a~~~ 275 (306)
+|+..|+|..|.|+.|.|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.9e-31 Score=220.37 Aligned_cols=171 Identities=18% Similarity=0.284 Sum_probs=154.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
+.-||||.|...++.++|++-|..||+|.++++++|. +++++|||||.|.+.++|+.||..|||..|++|.|+-+|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5569999999999999999999999999999999998 699999999999999999999999999999999999999998
Q ss_pred cCCCCCCC-------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHH
Q 021890 179 KKKNPFPP-------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251 (306)
Q Consensus 179 ~~~~~~~~-------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~ 251 (306)
+....... .......++++||+|++..++|++|++.|.+| |.|.+|+|.++ +||+||+|.+.|.|.
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f-G~I~EVRvFk~------qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF-GPIQEVRVFKD------QGYAFVRFETKEAAA 214 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC-CcceEEEEecc------cceEEEEecchhhHH
Confidence 87432211 12233457899999999999999999999998 99999999986 689999999999999
Q ss_pred HHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 252 TAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 252 ~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
+||..+||..|.|..|++.|.+....
T Consensus 215 hAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 215 HAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999877554
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=227.85 Aligned_cols=175 Identities=27% Similarity=0.401 Sum_probs=155.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcc---cCeEEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEF---EGRTLKV 173 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~---~g~~l~v 173 (306)
.+.-++|||-+|..++|.||+++|++||.|.+|.|++|+ +|.++|||||.|.+.++|.+|+..|++... ....|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445679999999999999999999999999999999999 699999999999999999999999988654 3468999
Q ss_pred eeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 021890 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (306)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~A 253 (306)
+++....... ...+.|||+-|++.++|.+++++|.+| |.|++|.|++|+. |.+||||||.|.+.+.|..|
T Consensus 112 k~Ad~E~er~--------~~e~KLFvg~lsK~~te~evr~iFs~f-G~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 112 KYADGERERI--------VEERKLFVGMLSKQCTENEVREIFSRF-GHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred cccchhhhcc--------ccchhhhhhhccccccHHHHHHHHHhh-Cccchhhheeccc-ccccceeEEEEehHHHHHHH
Confidence 9998765543 225789999999999999999999998 9999999999987 89999999999999999999
Q ss_pred HHHhCCc-eeCC--eeEEEeeCcchhhhhccc
Q 021890 254 ISAFQGK-LFMG--RPLRVAPSRQFARLQTKE 282 (306)
Q Consensus 254 l~~l~g~-~i~g--~~l~v~~a~~~~~~~~~~ 282 (306)
++.|||. .+.| .+|.|.||+.++.+..+.
T Consensus 182 ika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 182 IKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred HHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 9999997 4554 899999999877655443
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=9.9e-30 Score=245.96 Aligned_cols=168 Identities=23% Similarity=0.361 Sum_probs=151.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccC
Q 021890 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~ 180 (306)
.|||||||+++||++|+++|+.||.|.+|+|+++. +++++|||||+|.+.++|++|+..|++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 59999999999999999999999999999999998 58999999999999999999999999999999999999986433
Q ss_pred CCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc
Q 021890 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (306)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~ 260 (306)
... .....+|||+||+.++++++|+++|+.| |.|.+|++..+. +|+++|||||+|.+.++|.+|++.|+|.
T Consensus 82 ~~~-------~~~~~~vfV~nLp~~~~~~~L~~~F~~~-G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~ 152 (562)
T TIGR01628 82 SLR-------RSGVGNIFVKNLDKSVDNKALFDTFSKF-GNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGM 152 (562)
T ss_pred ccc-------ccCCCceEEcCCCccCCHHHHHHHHHhc-CCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhccc
Confidence 221 1124579999999999999999999997 999999999875 5889999999999999999999999999
Q ss_pred eeCCeeEEEeeCcchhhh
Q 021890 261 LFMGRPLRVAPSRQFARL 278 (306)
Q Consensus 261 ~i~g~~l~v~~a~~~~~~ 278 (306)
.+.|+.|.|.....+..+
T Consensus 153 ~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 153 LLNDKEVYVGRFIKKHER 170 (562)
T ss_pred EecCceEEEecccccccc
Confidence 999999999876655443
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2.3e-29 Score=243.40 Aligned_cols=178 Identities=25% Similarity=0.430 Sum_probs=157.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc----CeEEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE----GRTLKV 173 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~----g~~l~v 173 (306)
...++|||+||++++++++|+++|+.||.|.++.+..+.+|.++|||||.|.+.++|.+|++.|+|..+. |+.|.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 3456799999999999999999999999999999999988999999999999999999999999999999 999999
Q ss_pred eeecccCCCCCC---------CCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEe
Q 021890 174 NYAKIKKKNPFP---------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSF 244 (306)
Q Consensus 174 ~~~~~~~~~~~~---------~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f 244 (306)
.++..+...... ..........+|||+||+..+++++|+++|++| |.|.+|+++.| .+|.++|||||+|
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~-G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC-GEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc-CCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 988765433110 001112335689999999999999999999997 99999999998 5699999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 245 KSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 245 ~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
.+.++|.+|+..|||..|+|+.|.|.||..+..
T Consensus 334 ~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 334 SNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 999999999999999999999999999987654
No 9
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=1.1e-29 Score=199.71 Aligned_cols=173 Identities=23% Similarity=0.373 Sum_probs=155.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....+||||||+..++++-|.++|-+.|+|+++++.+++ +..++|||||+|.++++|+-|++.||...+.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 346789999999999999999999999999999999998 6889999999999999999999999999999999999988
Q ss_pred cccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeE-EEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS-AEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~-v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
....... ..+.+|||+||.+.+++..|.+.|..| |.+.. -+|++++.||.++|+|||.|.+.+.+.+|+.
T Consensus 87 s~~~~nl--------~vganlfvgNLd~~vDe~~L~dtFsaf-G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 87 SAHQKNL--------DVGANLFVGNLDPEVDEKLLYDTFSAF-GVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred ccccccc--------cccccccccccCcchhHHHHHHHHHhc-cccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 7322211 124789999999999999999999998 77665 4789999999999999999999999999999
Q ss_pred HhCCceeCCeeEEEeeCcchhhhh
Q 021890 256 AFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
.|||..+++++++|+|+..+...+
T Consensus 158 s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HhccchhcCCceEEEEEEecCCCc
Confidence 999999999999999998766544
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=217.90 Aligned_cols=176 Identities=24% Similarity=0.387 Sum_probs=150.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcc-cCeEEEEee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEF-EGRTLKVNY 175 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~-~g~~l~v~~ 175 (306)
...+-||||.||.++.|++|..+|++.|+|-+++|++++ +|.++|||||+|++.++|+.||+.||+.+| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456789999999999999999999999999999999996 799999999999999999999999999998 788888887
Q ss_pred ecccCCC---------------------------------C-----CCC-------------------------------
Q 021890 176 AKIKKKN---------------------------------P-----FPP------------------------------- 186 (306)
Q Consensus 176 ~~~~~~~---------------------------------~-----~~~------------------------------- 186 (306)
+..+... + ...
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 6543210 0 000
Q ss_pred ----CCCCC-------CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 187 ----VQPKP-------FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 187 ----~~~~~-------~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
..+.. ..-..|||+||+.++|++.|+++|+.| |.|++|+.++| ||||.|.+.++|.+|++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~-G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEF-GKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhc-cceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 00000 112579999999999999999999998 99999987744 99999999999999999
Q ss_pred HhCCceeCCeeEEEeeCcchhhhhccc
Q 021890 256 AFQGKLFMGRPLRVAPSRQFARLQTKE 282 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~~~~~~~~ 282 (306)
.+||+.|.|..|.|.+|++..+++...
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HhcCceecCceEEEEecCChhhhccch
Confidence 999999999999999999988766543
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.8e-28 Score=230.37 Aligned_cols=172 Identities=24% Similarity=0.347 Sum_probs=141.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc-CeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE-GRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~-g~~l~v~~~~ 177 (306)
..++|||+|||+++++++|+++|+.||.|.+++|+++.+|+++|||||+|.+.++|++||+.||+..+. |+.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 457899999999999999999999999999999999988999999999999999999999999998885 6666555432
Q ss_pred ccC--------------------------------------CCCCC-----------------------C----------
Q 021890 178 IKK--------------------------------------KNPFP-----------------------P---------- 186 (306)
Q Consensus 178 ~~~--------------------------------------~~~~~-----------------------~---------- 186 (306)
... ..... .
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 110 00000 0
Q ss_pred --CC-------CCCCccceeeecCCChhhhHHHHHHHHHhcC-CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 021890 187 --VQ-------PKPFATFNLFIANLSFEARAKDLREFFISEG-WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 187 --~~-------~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~-G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~ 256 (306)
.. .......+|||+||+..+++++|+++|+.|. |.|++|.++ ++||||+|.+.++|.+|++.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHH
Confidence 00 0011236799999999999999999999842 799998775 46999999999999999999
Q ss_pred hCCceeCCeeEEEeeCcchhhh
Q 021890 257 FQGKLFMGRPLRVAPSRQFARL 278 (306)
Q Consensus 257 l~g~~i~g~~l~v~~a~~~~~~ 278 (306)
|||..|.|+.|+|.||++..+.
T Consensus 289 lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 289 LNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred hCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999886553
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7.2e-29 Score=205.05 Aligned_cols=171 Identities=25% Similarity=0.451 Sum_probs=157.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
......|.|.-||.++|++||+.+|...|+|++|++++|+ +|.+.|||||.|-++++|++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3445679999999999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
+++.... +...+|||++||..++..+|.++|.+| |.|.--+|..|..+|.+||.|||+|+...+|..||.
T Consensus 118 ARPSs~~---------Ik~aNLYvSGlPktMtqkelE~iFs~f-GrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 118 ARPSSDS---------IKDANLYVSGLPKTMTQKELEQIFSPF-GRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred ccCChhh---------hcccceEEecCCccchHHHHHHHHHHh-hhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 9986543 235789999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhCCceeCC--eeEEEeeCcchhh
Q 021890 256 AFQGKLFMG--RPLRVAPSRQFAR 277 (306)
Q Consensus 256 ~l~g~~i~g--~~l~v~~a~~~~~ 277 (306)
.|||.+=.| .+|.|.||.....
T Consensus 188 ~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCccc
Confidence 999997765 7899999977643
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=5.4e-28 Score=228.89 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=148.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHh--cCCcccCeEEEEeeec
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL--ESYEFEGRTLKVNYAK 177 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l--~~~~~~g~~l~v~~~~ 177 (306)
+++|||+|||+.+++++|+++|+.||.|.+|.++++ +|||||+|.+.++|++|++.+ ++..++|+.|+|.|+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 578999999999999999999999999999999854 789999999999999999864 7889999999999997
Q ss_pred ccCCCCCCCC---CCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 021890 178 IKKKNPFPPV---QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (306)
Q Consensus 178 ~~~~~~~~~~---~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al 254 (306)
.+........ ........+|+|.||++.+++++|+++|..| |.|.+|.|+++.. +|+|||+|.+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~-G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPY-GKVLRIVTFTKNN----VFQALVEFESVNSAQHAK 151 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc-CCEEEEEEEecCC----ceEEEEEECCHHHHHHHH
Confidence 6532221110 0111123579999999999999999999997 9999999987542 478999999999999999
Q ss_pred HHhCCceeCC--eeEEEeeCcchhh-hhccccCCCCCCccccc
Q 021890 255 SAFQGKLFMG--RPLRVAPSRQFAR-LQTKEGLHSDETSDDLN 294 (306)
Q Consensus 255 ~~l~g~~i~g--~~l~v~~a~~~~~-~~~~~~~~~~~~~~~~~ 294 (306)
+.|||..|.| +.|+|.|++...- ....+....|.|..+++
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 9999999964 6899999986442 22233334455555554
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=9.9e-28 Score=229.66 Aligned_cols=175 Identities=22% Similarity=0.279 Sum_probs=144.7
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhc------------CCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQH------------GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES 163 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~------------G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~ 163 (306)
.....++|||||||+.+|+++|+++|..+ +.|..+.+. ..+|||||+|.+.++|..||. |+|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 44567899999999999999999999975 234445443 348999999999999999996 999
Q ss_pred CcccCeEEEEeeecccCCCCC---------C-----------CCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCee
Q 021890 164 YEFEGRTLKVNYAKIKKKNPF---------P-----------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223 (306)
Q Consensus 164 ~~~~g~~l~v~~~~~~~~~~~---------~-----------~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~ 223 (306)
..|.|+.|+|........... + ..........+|||+|||..+++++|+++|+.| |.|.
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~ 323 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF-GDLK 323 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCee
Confidence 999999999976543221100 0 000112234689999999999999999999997 9999
Q ss_pred EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 224 SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 224 ~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
.+.++.+..+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++.....
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~ 377 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGAN 377 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCC
Confidence 999999999999999999999999999999999999999999999999875443
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=6.7e-28 Score=199.32 Aligned_cols=192 Identities=20% Similarity=0.328 Sum_probs=163.4
Q ss_pred CCcccccCcccccccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHh
Q 021890 83 SSSAAAVNTEQREEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNL 161 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l 161 (306)
......+-..+..+......|||.+||..+|..||+.+|+.||.|...+|+.|. +|.++|.|||.|...++|+.||+.|
T Consensus 110 ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 110 NKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred cceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence 333444445555677778899999999999999999999999999988888887 7999999999999999999999999
Q ss_pred cCCcccC--eEEEEeeecccCCCCC-----------------------------------------CC------------
Q 021890 162 ESYEFEG--RTLKVNYAKIKKKNPF-----------------------------------------PP------------ 186 (306)
Q Consensus 162 ~~~~~~g--~~l~v~~~~~~~~~~~-----------------------------------------~~------------ 186 (306)
||..=.| .+|.|+|++....... ++
T Consensus 190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~ 269 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGV 269 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeee
Confidence 9988766 4899999875421100 00
Q ss_pred -CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 021890 187 -VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265 (306)
Q Consensus 187 -~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 265 (306)
.+......++|||.||.++++|..|+++|.+| |.|..|+|++|..|.+|+|||||.+.+.++|..|+..|||..+++|
T Consensus 270 ~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF-GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 270 NLPGGPGGGWCIFVYNLSPDADESILWQLFGPF-GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc-cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 11222335799999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCcch
Q 021890 266 PLRVAPSRQF 275 (306)
Q Consensus 266 ~l~v~~a~~~ 275 (306)
.|.|+|...+
T Consensus 349 vLQVsFKtnk 358 (360)
T KOG0145|consen 349 VLQVSFKTNK 358 (360)
T ss_pred EEEEEEecCC
Confidence 9999996543
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=2.6e-27 Score=224.26 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=144.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+||++ .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|..|+..|||..|.|+.|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3567999999998 69999999999999999999998763 699999999999999999999999999999999998
Q ss_pred cccCCCCCCC---------------------C-------CCCCCccceeeecCCChhhhHHHHHHHHHhcCCC--eeEEE
Q 021890 177 KIKKKNPFPP---------------------V-------QPKPFATFNLFIANLSFEARAKDLREFFISEGWD--VVSAE 226 (306)
Q Consensus 177 ~~~~~~~~~~---------------------~-------~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~--v~~v~ 226 (306)
+......... . .....++.+|||+|||..+++++|+++|+.| |. |..++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~-G~~~i~~ik 427 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAEN-GVHKVKKFK 427 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhc-CCccceEEE
Confidence 6542111000 0 0011346789999999999999999999997 76 88888
Q ss_pred EEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCee------EEEeeCcch
Q 021890 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP------LRVAPSRQF 275 (306)
Q Consensus 227 i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~------l~v~~a~~~ 275 (306)
+.... +..+|+|||+|.+.++|.+|+..|||..|.|+. |+|+|++++
T Consensus 428 ~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 76543 235899999999999999999999999999985 999999764
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.5e-27 Score=215.11 Aligned_cols=178 Identities=28% Similarity=0.448 Sum_probs=157.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
.+|||++||+.++.++|.++|+.+|+|..+.++.+. .+.++|||||+|.-.+++++|+..+++..++|+.|+|.++..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999999998887 4789999999999999999999999999999999999999876
Q ss_pred CCCC-CCC----------C------CCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEE
Q 021890 180 KKNP-FPP----------V------QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFV 242 (306)
Q Consensus 180 ~~~~-~~~----------~------~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV 242 (306)
.... ... . .....+...|.|+|||+.+...+|+.+|..| |.|..|.|++...++.| |||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~-G~V~Ei~IP~k~dgklc-GFaFV 163 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF-GKVVEIVIPRKKDGKLC-GFAFV 163 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc-ceEEEEEcccCCCCCcc-ceEEE
Confidence 5433 110 0 1112336789999999999999999999998 99999999988876666 99999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhhhhc
Q 021890 243 SFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQT 280 (306)
Q Consensus 243 ~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~~ 280 (306)
.|....+|.+|++.+||..|+||+|-|.||-++.....
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 99999999999999999999999999999988877554
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.2e-26 Score=222.26 Aligned_cols=176 Identities=20% Similarity=0.238 Sum_probs=147.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345789999999999999999999999999999998886 6999999999999999999999999999999999999998
Q ss_pred cccCCCCCCC-------------------CCCCCCccceeeecCCChh----------hhHHHHHHHHHhcCCCeeEEEE
Q 021890 177 KIKKKNPFPP-------------------VQPKPFATFNLFIANLSFE----------ARAKDLREFFISEGWDVVSAEV 227 (306)
Q Consensus 177 ~~~~~~~~~~-------------------~~~~~~~~~~l~V~nL~~~----------~t~~~l~~~F~~~~G~v~~v~i 227 (306)
.......... ......++.+|+|.|+... ...++|+++|.+| |.|..|.|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~-G~v~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY-GPLINIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc-CCeeEEEe
Confidence 6543211100 0112335678999999532 2346899999998 99999999
Q ss_pred EecC---CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 228 IFHD---NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 228 ~~~~---~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
+++. .++.+.|+|||+|.+.++|.+|+..|||..|+|+.|.|.|...
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 8752 3456789999999999999999999999999999999999765
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.4e-26 Score=206.33 Aligned_cols=177 Identities=26% Similarity=0.417 Sum_probs=153.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
.-+|.|+||||.+...+|+.+|+.||.|.+|.|.+..+|+-.|||||.|....+|..|++.+||..|+||+|-|.||.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 66899999999999999999999999999999998888888899999999999999999999999999999999999765
Q ss_pred CCCCC--------------------------------------------CC-----------------------------
Q 021890 180 KKNPF--------------------------------------------PP----------------------------- 186 (306)
Q Consensus 180 ~~~~~--------------------------------------------~~----------------------------- 186 (306)
..-.. ..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 31100 00
Q ss_pred ---C-----CCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh-
Q 021890 187 ---V-----QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF- 257 (306)
Q Consensus 187 ---~-----~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l- 257 (306)
. ........+|||+|||+++++++|.+.|.+| |.|.++.|+.++.||.++|.|||.|.+..+|..||++-
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF-G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF-GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhh-ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0 0001113689999999999999999999998 99999999999999999999999999999999999976
Q ss_pred ----CC-ceeCCeeEEEeeCcchhh
Q 021890 258 ----QG-KLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 258 ----~g-~~i~g~~l~v~~a~~~~~ 277 (306)
.| ..+.||.|.|..|-.+..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 24 688999999999866553
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=194.06 Aligned_cols=152 Identities=28% Similarity=0.468 Sum_probs=141.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccCC
Q 021890 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~ 181 (306)
+|||||||..+++.+|+.+|++||.|.+|.|+ +.||||..++...|+.||+.|+|..|+|..|.|+-++.+.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 59999999999999999999999999999999 77999999999999999999999999999999999887744
Q ss_pred CCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 021890 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261 (306)
Q Consensus 182 ~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~ 261 (306)
. +.+|+|+||.+.++.++|++.|+++ |.|.+|.|++ +|+||.|+..++|..|++.|+|..
T Consensus 77 ~-----------stkl~vgNis~tctn~ElRa~fe~y-gpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 77 A-----------STKLHVGNISPTCTNQELRAKFEKY-GPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred C-----------ccccccCCCCccccCHHHhhhhccc-CCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 3 5789999999999999999999997 9999999984 599999999999999999999999
Q ss_pred eCCeeEEEeeCcchhhhhc
Q 021890 262 FMGRPLRVAPSRQFARLQT 280 (306)
Q Consensus 262 i~g~~l~v~~a~~~~~~~~ 280 (306)
|.|+++.|..+..+.+..+
T Consensus 137 ~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred cccceeeeeeeccccccCC
Confidence 9999999999988776443
No 21
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.5e-26 Score=198.17 Aligned_cols=194 Identities=21% Similarity=0.334 Sum_probs=161.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
.++||||.+++...|+.|+..|..||+|++|.|-.|. +++++|||||+|+-+|.|+-|++.|||..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4789999999999999999999999999999998888 799999999999999999999999999999999999983221
Q ss_pred cCCCCCCC----CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 021890 179 KKKNPFPP----VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (306)
Q Consensus 179 ~~~~~~~~----~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al 254 (306)
.....+ .......-.+|||..+.++++++||+..|+.| |+|.+|.+.+++.++..+||||++|.+..+...|+
T Consensus 193 --mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF-G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 193 --MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred --CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh-cceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 111000 00111123689999999999999999999998 99999999999998999999999999999999999
Q ss_pred HHhCCceeCCeeEEEeeCcchhhhhccccCCCCCCccccccCccccc
Q 021890 255 SAFQGKLFMGRPLRVAPSRQFARLQTKEGLHSDETSDDLNINAEEAD 301 (306)
Q Consensus 255 ~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (306)
..||=+.++|..|+|..+-..... .-.-.|...+|..++++-
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP~a-----Ll~Pat~s~~P~aaaVAa 311 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPPDA-----LLQPATVSAIPAAAAVAA 311 (544)
T ss_pred hhcchhhcccceEecccccCCCch-----hcCCCCcccCchHHHHHH
Confidence 999999999999999987543321 222345666776665543
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=3.8e-24 Score=202.31 Aligned_cols=170 Identities=28% Similarity=0.403 Sum_probs=141.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
.++|||+|||..+++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5789999999999999999999999999999999887 479999999999999999999999999999999999999652
Q ss_pred cCCCC-----------------------------------------CCC-------------------------------
Q 021890 179 KKKNP-----------------------------------------FPP------------------------------- 186 (306)
Q Consensus 179 ~~~~~-----------------------------------------~~~------------------------------- 186 (306)
..... .+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 11000 000
Q ss_pred -------C--CCCCCccceeeecCCChhhh----------HHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 021890 187 -------V--QPKPFATFNLFIANLSFEAR----------AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (306)
Q Consensus 187 -------~--~~~~~~~~~l~V~nL~~~~t----------~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 247 (306)
. .....+..+|+|.||-.... .++|++.|.+| |.|..|.|.. ..+.|++||+|.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~-G~v~~v~v~~----~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY-GGVVHIYVDT----KNSAGKIYLKFSSV 420 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc-CCeeEEEEeC----CCCceeEEEEECCH
Confidence 0 00124457899999843322 46899999997 9999998864 34579999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 248 KVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 248 ~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
++|.+|+..|||..|+|+.|.|.|...
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 999999999999999999999999654
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6.4e-24 Score=192.42 Aligned_cols=155 Identities=25% Similarity=0.386 Sum_probs=144.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccCC
Q 021890 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKK 181 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~ 181 (306)
.|||| +++|+..|.++|+.+|+++++++.++. + +.|||||.|.++++|++|+..||...+.|+.|+|-|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 48999 999999999999999999999999999 7 999999999999999999999999999999999999876433
Q ss_pred CCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 021890 182 NPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261 (306)
Q Consensus 182 ~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~ 261 (306)
. |||.||++.++..+|.++|..| |.|.+|++..+.+ | ++|| ||+|++.+.|.+|++.|||..
T Consensus 78 ~--------------~~i~nl~~~~~~~~~~d~f~~~-g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 78 L--------------VFIKNLDESIDNKSLYDTFSEF-GNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred e--------------eeecCCCcccCcHHHHHHHHhh-cCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 2 9999999999999999999998 9999999999876 5 8999 999999999999999999999
Q ss_pred eCCeeEEEeeCcchhhhh
Q 021890 262 FMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 262 i~g~~l~v~~a~~~~~~~ 279 (306)
+.|+.|.|.....+..+.
T Consensus 140 l~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEERE 157 (369)
T ss_pred cCCCeeEEeeccchhhhc
Confidence 999999999887766544
No 24
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.7e-24 Score=179.80 Aligned_cols=178 Identities=29% Similarity=0.420 Sum_probs=156.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCc-ccC--eEEEEee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE-FEG--RTLKVNY 175 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~-~~g--~~l~v~~ 175 (306)
+.++||||.|...-.|+|++.+|..||.|.+|.+.+..+|.++|+|||.|.+..+|+.||..|+|.. +-| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5788999999999999999999999999999999999999999999999999999999999999854 344 5788888
Q ss_pred ecccCCCCC-----------------------------------------------------------------------
Q 021890 176 AKIKKKNPF----------------------------------------------------------------------- 184 (306)
Q Consensus 176 ~~~~~~~~~----------------------------------------------------------------------- 184 (306)
+....++..
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 875421100
Q ss_pred ----------CC--------------------------------------------------------------------
Q 021890 185 ----------PP-------------------------------------------------------------------- 186 (306)
Q Consensus 185 ----------~~-------------------------------------------------------------------- 186 (306)
++
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00
Q ss_pred --------------------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCC
Q 021890 187 --------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246 (306)
Q Consensus 187 --------------------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~ 246 (306)
-.....+.++|||..||....+.+|.+.|-+| |.|.+.++..|+.|..++.||||.|++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF-GhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF-GHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc-cceeeeeeeehhccccccceeeEecCC
Confidence 11234557899999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 247 KKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 247 ~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
+.+|+.||.+|||+.|+-++|+|.+.|++..
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999888764
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=9.4e-24 Score=196.20 Aligned_cols=176 Identities=26% Similarity=0.433 Sum_probs=151.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCC----cceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR----NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~----~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.++|||.||++.++.++|...|...|.|.++.|...+++. +.|||||+|.+.++|++|++.|+|..++|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3449999999999999999999999999999887766543 559999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
+..+.................|+|.|||+..+-.+++.+|..| |.+.+|+|+..-..+..+|||||+|-++.+|.+|++
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF-GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF-GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc-cceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 9843333322222222235789999999999999999999998 999999998774556789999999999999999999
Q ss_pred HhCCceeCCeeEEEeeCcchh
Q 021890 256 AFQGKLFMGRPLRVAPSRQFA 276 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~~ 276 (306)
+|.+..+.||+|-+.||..-.
T Consensus 674 al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 674 ALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hhcccceechhhheehhccch
Confidence 999999999999999987644
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=185.58 Aligned_cols=178 Identities=28% Similarity=0.361 Sum_probs=157.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCc-ccC--eEEEEee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE-FEG--RTLKVNY 175 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~-~~g--~~l~v~~ 175 (306)
..++||||.|+..+||.|++++|++||.|++|.|+++..+.++|||||.|.+.+-|..||+.|||.. +.| .+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 4688999999999999999999999999999999999999999999999999999999999999854 555 5899999
Q ss_pred ecccCCCCC-----------------------------------------------------------------------
Q 021890 176 AKIKKKNPF----------------------------------------------------------------------- 184 (306)
Q Consensus 176 ~~~~~~~~~----------------------------------------------------------------------- 184 (306)
+..+.....
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 987632200
Q ss_pred ----------------------------C---------------------------------------------------
Q 021890 185 ----------------------------P--------------------------------------------------- 185 (306)
Q Consensus 185 ----------------------------~--------------------------------------------------- 185 (306)
+
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 0
Q ss_pred -----------------------------------------------------CCCCCCCccceeeecCCChhhhHHHHH
Q 021890 186 -----------------------------------------------------PVQPKPFATFNLFIANLSFEARAKDLR 212 (306)
Q Consensus 186 -----------------------------------------------------~~~~~~~~~~~l~V~nL~~~~t~~~l~ 212 (306)
....+......|||++||-..-+.+|-
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 011223445689999999999999999
Q ss_pred HHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 213 ~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
..|..| |.|.+.++..|..|+.++.|+||.|++..+|..||..|||+.|++++|+|...+.+..
T Consensus 443 ~~f~pf-G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 443 ATFQPF-GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHhccc-cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 999998 8999999999999999999999999999999999999999999999999999877543
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.3e-23 Score=173.48 Aligned_cols=141 Identities=33% Similarity=0.421 Sum_probs=123.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
+...++||||||+..+||+-|..||++.|.+..++|+.+ .|+|.|+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 345689999999999999999999999999999999854 4667777
Q ss_pred cccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 021890 177 KIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~ 256 (306)
........+.. ....-+||+.|...++-++|++.|.+| |+|.+++|++|..|++++|||||.|.+.++|+.||..
T Consensus 49 ~~p~nQsk~t~----~~hfhvfvgdls~eI~~e~lr~aF~pF-GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 49 TAPGNQSKPTS----NQHFHVFVGDLSPEIDNEKLREAFAPF-GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred cCcccCCCCcc----ccceeEEehhcchhcchHHHHHHhccc-cccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 65522221111 114679999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hCCceeCCeeEEEeeCcchh
Q 021890 257 FQGKLFMGRPLRVAPSRQFA 276 (306)
Q Consensus 257 l~g~~i~g~~l~v~~a~~~~ 276 (306)
|||.+|++|.||-.||..+.
T Consensus 124 MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred hCCeeeccceeeccccccCc
Confidence 99999999999999998877
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=1.8e-23 Score=189.63 Aligned_cols=184 Identities=20% Similarity=0.319 Sum_probs=159.3
Q ss_pred ccccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 94 ~~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
..++.+.++||+--|...++..+|.+||+.+|.|.+++++.++ .+.++|.|||+|.+.+....||. |.|..+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeE
Confidence 3456677899999999999999999999999999999999998 58999999999999999999997 999999999999
Q ss_pred EeeecccCCCCCCCCC-----CCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 021890 173 VNYAKIKKKNPFPPVQ-----PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (306)
Q Consensus 173 v~~~~~~~~~~~~~~~-----~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 247 (306)
|............... ....+...|||+||..++++++|+.+|++| |.|+.|.+.+|..||.++|||||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf-g~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF-GKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCc-ccceeeeeccccccccccCcceEEEecH
Confidence 9987654433211111 112233449999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEeeCcchhhhh
Q 021890 248 KVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 248 ~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
++|.+|++.|||++|.|+.|+|.....+....
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999999999999999999999876655443
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.2e-22 Score=180.60 Aligned_cols=173 Identities=20% Similarity=0.384 Sum_probs=155.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
...|||.||+..++..+|.++|+.||.|.+|++..+..| ++|| ||+|+++++|.+|+..+||..+.|++|.|.....+
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 344999999999999999999999999999999999988 8999 99999999999999999999999999999998887
Q ss_pred CCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 021890 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (306)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g 259 (306)
.....+... ....-..++|.|++..++++.|.++|..+ |.|..+.++.+.. |.++||+||.|.+.++|..|++.|+|
T Consensus 154 ~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~-g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 154 EEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAY-GSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhhcccccc-hhhhhhhhheeccccccchHHHHHhhccc-CcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccC
Confidence 665544333 33335679999999999999999999997 9999999999876 66999999999999999999999999
Q ss_pred ceeCCeeEEEeeCcchhh
Q 021890 260 KLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 260 ~~i~g~~l~v~~a~~~~~ 277 (306)
..++|..+.|..+..+.+
T Consensus 231 ~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKSE 248 (369)
T ss_pred CcCCccceeecccccchh
Confidence 999999999998776443
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.88 E-value=1.2e-22 Score=178.12 Aligned_cols=175 Identities=23% Similarity=0.435 Sum_probs=157.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.++||||+|+|.++++.|++.|..||.|.+|.+++++ +++++||+||+|++.+...+++. .....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56889999999999999999999999999999999998 59999999999999999999998 46788999999999998
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
+.......... .....|||++|+.+++++++++.|++| |.|..+.++.|..+.+++||+||.|.+.+++.+++. .
T Consensus 84 ~r~~~~~~~~~---~~tkkiFvGG~~~~~~e~~~r~yfe~~-g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 84 SREDQTKVGRH---LRTKKIFVGGLPPDTTEEDFKDYFEQF-GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred Ccccccccccc---cceeEEEecCcCCCCchHHHhhhhhcc-ceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 87655432211 146789999999999999999999998 899999999999999999999999999999999997 6
Q ss_pred CCceeCCeeEEEeeCcchhhhh
Q 021890 258 QGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 258 ~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
..+.|+|+.|.|..|.++....
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ceeeecCceeeEeeccchhhcc
Confidence 8999999999999998877654
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.1e-21 Score=151.10 Aligned_cols=155 Identities=22% Similarity=0.376 Sum_probs=130.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||||||.++.+.+|.++|-+||.|.+|.+.... ..-+||||+|++..+|+.||..-+|..++|..|+|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 45789999999999999999999999999999885432 2367999999999999999999999999999999999986
Q ss_pred cCCCCCCC-----------------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEE
Q 021890 179 KKKNPFPP-----------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGF 241 (306)
Q Consensus 179 ~~~~~~~~-----------------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~af 241 (306)
........ ..+.-...+.+.|.+||+..++++|++.+.+. |.|+...+.+| |++.
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea-GdvCfadv~rD-------g~Gv 154 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA-GDVCFADVQRD-------GVGV 154 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh-CCeeeeeeecc-------ccee
Confidence 53211100 11122234689999999999999999999985 99999999876 4799
Q ss_pred EEeCCHHHHHHHHHHhCCceeC
Q 021890 242 VSFKSKKVAETAISAFQGKLFM 263 (306)
Q Consensus 242 V~f~~~~~a~~Al~~l~g~~i~ 263 (306)
|+|...++...|+..|+...+.
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeehhhHHHHHHhhcccccc
Confidence 9999999999999999987765
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=2.9e-20 Score=176.52 Aligned_cols=80 Identities=18% Similarity=0.381 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+||++++++++|+++|+.||.|.+++|.++. +|+++|||||+|.+.++|.+|++.||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45789999999999999999999999999999999987 58899999999999999999999999999999999999877
Q ss_pred c
Q 021890 178 I 178 (306)
Q Consensus 178 ~ 178 (306)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.81 E-value=1.2e-18 Score=142.74 Aligned_cols=166 Identities=25% Similarity=0.372 Sum_probs=140.4
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 100 KTRLVAQNVPWTSTHEDIRA----LFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~----~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..+|||.||+..+..++|+. +|+.||.|.+|... ++.+.+|-|||.|.+.+.|..|++.|+|..+.|+.++|.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 34899999999999999998 99999999988665 3567799999999999999999999999999999999999
Q ss_pred ecccCCCCCCC----------------------------------------C-CCCCCccceeeecCCChhhhHHHHHHH
Q 021890 176 AKIKKKNPFPP----------------------------------------V-QPKPFATFNLFIANLSFEARAKDLREF 214 (306)
Q Consensus 176 ~~~~~~~~~~~----------------------------------------~-~~~~~~~~~l~V~nL~~~~t~~~l~~~ 214 (306)
|+.+...-... . .....+...|++.|||..++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 98764321110 0 111345678999999999999999999
Q ss_pred HHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEeeCc
Q 021890 215 FISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM-GRPLRVAPSR 273 (306)
Q Consensus 215 F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~v~~a~ 273 (306)
|..| ..-..++++.. -.+.|||+|.+...|..|...|+|+.|. ...+.|.+++
T Consensus 167 f~qf-~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQF-PGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhC-cccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9998 66777777753 2678999999999999999999999887 8899999875
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=2.6e-19 Score=162.68 Aligned_cols=167 Identities=26% Similarity=0.355 Sum_probs=133.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
...||||||.+++++++|+.+|+.||.|..|.+..+. +|.++|||||+|.+.++|.+|+..|||++|-|+.|+|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3449999999999999999999999999999999987 899999999999999999999999999999999999887654
Q ss_pred cCCCCCC---------------------------------------------------------------CC-------C
Q 021890 179 KKKNPFP---------------------------------------------------------------PV-------Q 188 (306)
Q Consensus 179 ~~~~~~~---------------------------------------------------------------~~-------~ 188 (306)
....... .. +
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 3211100 00 0
Q ss_pred CCCCccceeeecCCCh-------hh---hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 021890 189 PKPFATFNLFIANLSF-------EA---RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (306)
Q Consensus 189 ~~~~~~~~l~V~nL~~-------~~---t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~ 258 (306)
.-.+++.++.+.|+=. ++ ..+++.+-..++ |.|..|.+-+ + +-|+.||.|.+.++|..|+.+||
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~-g~v~hi~vd~--n---s~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH-GKVCHIFVDK--N---SAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc-CCeeEEEEcc--C---CCceEEEecCcHHHHHHHHHHHh
Confidence 0114566777887611 11 124566666887 8898776643 2 35999999999999999999999
Q ss_pred CceeCCeeEEEeeC
Q 021890 259 GKLFMGRPLRVAPS 272 (306)
Q Consensus 259 g~~i~g~~l~v~~a 272 (306)
|.+|.|+.|+++|-
T Consensus 512 grWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 512 GRWFAGRMITAKYL 525 (549)
T ss_pred hhhhccceeEEEEe
Confidence 99999999999984
No 35
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=1e-17 Score=144.39 Aligned_cols=179 Identities=22% Similarity=0.288 Sum_probs=144.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEE--------EEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCe
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--------IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~--------~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 169 (306)
.....|||.|||.++|.+++.++|++||.|.+ |++.++..|..+|=|++.|...+++.-|++.|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34567999999999999999999999998754 7888888999999999999999999999999999999999
Q ss_pred EEEEeeecccCCCCCC-----------------------------CCCCCCCccceeeecCCCh----h-----h--hHH
Q 021890 170 TLKVNYAKIKKKNPFP-----------------------------PVQPKPFATFNLFIANLSF----E-----A--RAK 209 (306)
Q Consensus 170 ~l~v~~~~~~~~~~~~-----------------------------~~~~~~~~~~~l~V~nL~~----~-----~--t~~ 209 (306)
.|+|..|+-....... .........++|.+.|+=. . + -.+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999988754322110 0112223357899998721 1 1 235
Q ss_pred HHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhhhhcc
Q 021890 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281 (306)
Q Consensus 210 ~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~~~ 281 (306)
+|++-..+| |.|.+|.|.- ..+.|.+-|.|.+.++|..||..|+|++|+||.|..+....+.+.+..
T Consensus 292 dl~eec~K~-G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~e 358 (382)
T KOG1548|consen 292 DLTEECEKF-GQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQTE 358 (382)
T ss_pred HHHHHHHHh-CCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeeee
Confidence 677778886 9999997763 236899999999999999999999999999999999998887776644
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=7.2e-18 Score=133.81 Aligned_cols=84 Identities=27% Similarity=0.544 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.++.++.+. +++++|||||+|.+.++|++|++.|++..|+|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 345789999999999999999999999999999999887 6999999999999999999999999999999999999999
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86544
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.76 E-value=1.7e-17 Score=149.11 Aligned_cols=172 Identities=22% Similarity=0.333 Sum_probs=136.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
....|.+.+|||.+|++||.+||+.|+ |.++.+. ..+|+..|-|||+|.+++++++|++ .+...+..|.|.|--+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~-r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP-RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe-ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 345689999999999999999999987 5554443 3469999999999999999999999 699999999999998876
Q ss_pred cCCCCCCC-CCC-CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEE-EEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 179 KKKNPFPP-VQP-KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA-EVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 179 ~~~~~~~~-~~~-~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v-~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
......-. ..+ .......|.+++||+.++++||.+||+-. .|... .++.....+++.|-|||.|++.+.|++|+.
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 55432211 111 11345789999999999999999999964 44443 223444457899999999999999999998
Q ss_pred HhCCceeCCeeEEEeeCcchh
Q 021890 256 AFQGKLFMGRPLRVAPSRQFA 276 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~~ 276 (306)
. |...|+-|.|.|-.+....
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred H-HHHhhccceEEeehhHHHH
Confidence 5 8889999999998764433
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=6.8e-18 Score=133.97 Aligned_cols=84 Identities=38% Similarity=0.586 Sum_probs=79.4
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
...+|||+||++.+++++|+++|++| |.|.+|.++.|..++.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF-GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35789999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred cchhh
Q 021890 273 RQFAR 277 (306)
Q Consensus 273 ~~~~~ 277 (306)
+++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 77554
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.74 E-value=8.1e-17 Score=142.54 Aligned_cols=176 Identities=24% Similarity=0.384 Sum_probs=147.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh-hcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~-~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
.+.+||.|||+++.+.+|+++|. +-|.|..|.++.|..|+++|+|.|+|+++|.+++|++.||.+.+.||.|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999998 57899999999999999999999999999999999999999999999999986654
Q ss_pred cCCCCC--------------------------------------------CC----------------------------
Q 021890 179 KKKNPF--------------------------------------------PP---------------------------- 186 (306)
Q Consensus 179 ~~~~~~--------------------------------------------~~---------------------------- 186 (306)
...... ..
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 210000 00
Q ss_pred ----CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 021890 187 ----VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262 (306)
Q Consensus 187 ----~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i 262 (306)
-...++....+||.||.+.+....|++.|.- .|.|..+.+..|+. |.++|+|.++|.++-.|..||..|++.-+
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 0012233467999999999999999999997 59999999998877 79999999999999999999999998777
Q ss_pred CCeeEEEeeCcchhh
Q 021890 263 MGRPLRVAPSRQFAR 277 (306)
Q Consensus 263 ~g~~l~v~~a~~~~~ 277 (306)
.+++..+...+-..+
T Consensus 282 ~~~~~~~Rl~~~~Dr 296 (608)
T KOG4212|consen 282 FDRRMTVRLDRIPDR 296 (608)
T ss_pred ccccceeeccccccc
Confidence 778888777555444
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=6e-18 Score=139.99 Aligned_cols=156 Identities=26% Similarity=0.494 Sum_probs=132.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccC
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~ 180 (306)
..||||+||+.+.+.+|..||..||.+.++.|. .||+||+|.+..+|..|+..|++..|.|..+.|.|+....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 359999999999999999999999999999987 7899999999999999999999999999999999998642
Q ss_pred CCCCCC-----------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHH
Q 021890 181 KNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKV 249 (306)
Q Consensus 181 ~~~~~~-----------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~ 249 (306)
.....+ ........+.|.|.|+...+.+.+|.+.|.++ |.+....+ ..+++||+|...++
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~-g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA-GEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc-CCCchhhh--------hccccceeehhhhh
Confidence 222110 11112234779999999999999999999997 88854433 35789999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEeeC
Q 021890 250 AETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 250 a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
|.+|+..|+|..+.|+.|++.+.
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999543
No 41
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=4.5e-16 Score=126.77 Aligned_cols=161 Identities=24% Similarity=0.252 Sum_probs=124.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC--CCcceEEEEEeCCHHHHHHHHHHhcCCcc---cCeEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEF---EGRTLK 172 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~~~~~---~g~~l~ 172 (306)
...++|||.+||.++...||..+|..|--.+.+.+..... ...+.+|||+|.+..+|.+|++.|||..| .+..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3468999999999999999999999998777777755442 34568999999999999999999999998 578999
Q ss_pred EeeecccCCCCCCC------------------------------------------------------------------
Q 021890 173 VNYAKIKKKNPFPP------------------------------------------------------------------ 186 (306)
Q Consensus 173 v~~~~~~~~~~~~~------------------------------------------------------------------ 186 (306)
|++++...+...+.
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 99987543221100
Q ss_pred -----------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 187 -----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 187 -----------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
.......+.+|||.||.+.++|++|+.+|+.|-| ....+|.. ..| ...|||+|.+.+.|..|+.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g-f~~l~~~~--~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG-FHILKIRA--RGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC-ceEEEEec--CCC--cceEeecHHHHHHHHHHHH
Confidence 0000112458999999999999999999999855 33333322 223 4579999999999999999
Q ss_pred HhCCceeC
Q 021890 256 AFQGKLFM 263 (306)
Q Consensus 256 ~l~g~~i~ 263 (306)
.|+|..|.
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99998764
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=148.80 Aligned_cols=172 Identities=28% Similarity=0.413 Sum_probs=139.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....+.|+|+|||..+..++|..+|..||.|..+.+. +. ---++|+|.+..+|.+|++.|....+...++++.|
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cc---cceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 45556889999999999999999999999999998554 21 22499999999999999999999999999999988
Q ss_pred ecccCCCCCC----------------C-----------CCC-------------CCCcc-ceeeecCCChhhhHHHHHHH
Q 021890 176 AKIKKKNPFP----------------P-----------VQP-------------KPFAT-FNLFIANLSFEARAKDLREF 214 (306)
Q Consensus 176 ~~~~~~~~~~----------------~-----------~~~-------------~~~~~-~~l~V~nL~~~~t~~~l~~~ 214 (306)
+........+ + ... ..... ..|||.||++.++.++|...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 7643221000 0 000 00111 23999999999999999999
Q ss_pred HHhcCCCeeEEEEEecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 215 FISEGWDVVSAEVIFHDNP---RRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 215 F~~~~G~v~~v~i~~~~~t---g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
|... |.|.++.|...++. -.+.|||||+|.+.++|..|+..|+|..++|+.|.|.++.
T Consensus 536 F~k~-G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQ-GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhc-CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9995 99999988866542 2366999999999999999999999999999999999998
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.2e-16 Score=110.91 Aligned_cols=70 Identities=31% Similarity=0.570 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 103 l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
|||+|||+++++++|+++|+.||.|..+.+..+..+..+|+|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999887789999999999999999999999999999999985
No 44
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=3.2e-16 Score=143.32 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...+|||+|||+.+++++|+++|+.||.|.+++|+++. +|.++|||||+|.+.++|.+|+..|||..|+||.|+|.|..
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999998 79999999999999999999999999999999999999988
Q ss_pred ccC
Q 021890 178 IKK 180 (306)
Q Consensus 178 ~~~ 180 (306)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 764
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.2e-16 Score=117.67 Aligned_cols=84 Identities=23% Similarity=0.383 Sum_probs=77.7
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 95 ~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
.....+++||||||++.++|++|.++|+.+|.|..|.|-.++ +..+.|||||+|.+.++|+.|++.++|..++.+.|++
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 345568999999999999999999999999999999998888 5789999999999999999999999999999999999
Q ss_pred eeecc
Q 021890 174 NYAKI 178 (306)
Q Consensus 174 ~~~~~ 178 (306)
.|...
T Consensus 111 D~D~G 115 (153)
T KOG0121|consen 111 DWDAG 115 (153)
T ss_pred ecccc
Confidence 98754
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=5.3e-15 Score=130.19 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=136.6
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVP-WTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~-~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
...|.|.||. ..+|.+-|..+|+-||.|.+|+|+.++ +--|+|.|.+...|+-|++.|+|..|.|++|+|.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 5778899985 568999999999999999999999875 46799999999999999999999999999999999986
Q ss_pred cCCCCCCC--------------------------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCC
Q 021890 179 KKKNPFPP--------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN 232 (306)
Q Consensus 179 ~~~~~~~~--------------------------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~ 232 (306)
..-..... -..-..++.+|++.|+|..++|++|+..|..-+|.|.-.+..
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---- 448 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---- 448 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----
Confidence 53211100 001124567999999999999999999999874455544433
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-eeEEEeeCcc
Q 021890 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMG-RPLRVAPSRQ 274 (306)
Q Consensus 233 tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-~~l~v~~a~~ 274 (306)
++.+.+|++.+.+.+.|..|+-.++++.+++ ..|||+|++.
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 3457799999999999999999999999985 5999999875
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.65 E-value=2.3e-15 Score=131.91 Aligned_cols=155 Identities=28% Similarity=0.403 Sum_probs=119.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
.++|||+|||+.+++++|.++|..||.|..+.+..++ +|.++|||||+|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999996 799999999999999999999999999999999999999652
Q ss_pred ----cCCCCC-----------CCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEE
Q 021890 179 ----KKKNPF-----------PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVS 243 (306)
Q Consensus 179 ----~~~~~~-----------~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~ 243 (306)
...... ............+++.+++..+...++...|..+ |.+....+.............++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR-GDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc-ccceeeeccCCCCCcccccccccc
Confidence 222110 0111223345789999999999999999999986 888666665544333333344444
Q ss_pred eCCHHHHHHHHH
Q 021890 244 FKSKKVAETAIS 255 (306)
Q Consensus 244 f~~~~~a~~Al~ 255 (306)
+.....+.....
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 444444444333
No 48
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=5.8e-16 Score=139.90 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=78.8
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
..++|||+|||+++++++|+++|+.| |.|++|+|++|..+++++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~-G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTI-GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 46889999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred cchh
Q 021890 273 RQFA 276 (306)
Q Consensus 273 ~~~~ 276 (306)
++..
T Consensus 185 ~p~~ 188 (346)
T TIGR01659 185 RPGG 188 (346)
T ss_pred cccc
Confidence 7643
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=4e-15 Score=129.17 Aligned_cols=177 Identities=16% Similarity=0.244 Sum_probs=138.6
Q ss_pred ccccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC-CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 94 ~~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
.++...-.+|||..+.++.+++||+..|+.||+|+.|.+.+..+ +.++|||||+|.+..+-..|+..||-+.++|..|+
T Consensus 204 qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLR 283 (544)
T KOG0124|consen 204 QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLR 283 (544)
T ss_pred HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEe
Confidence 34555678999999999999999999999999999999999986 78999999999999999999999999999999999
Q ss_pred EeeecccCCCC---------------------------------------------------------------------
Q 021890 173 VNYAKIKKKNP--------------------------------------------------------------------- 183 (306)
Q Consensus 173 v~~~~~~~~~~--------------------------------------------------------------------- 183 (306)
|..+......-
T Consensus 284 VGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pg 363 (544)
T KOG0124|consen 284 VGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPG 363 (544)
T ss_pred cccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCc
Confidence 98765331100
Q ss_pred -------CCC---------------------------------------------------CCC--------------CC
Q 021890 184 -------FPP---------------------------------------------------VQP--------------KP 191 (306)
Q Consensus 184 -------~~~---------------------------------------------------~~~--------------~~ 191 (306)
..+ ... ..
T Consensus 364 vi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~ 443 (544)
T KOG0124|consen 364 VITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRK 443 (544)
T ss_pred eeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhcc
Confidence 000 000 01
Q ss_pred CccceeeecCC--Chhhh---HHHHHHHHHhcCCCeeEEEEEecCCCCCC----ccEEEEEeCCHHHHHHHHHHhCCcee
Q 021890 192 FATFNLFIANL--SFEAR---AKDLREFFISEGWDVVSAEVIFHDNPRRS----AGYGFVSFKSKKVAETAISAFQGKLF 262 (306)
Q Consensus 192 ~~~~~l~V~nL--~~~~t---~~~l~~~F~~~~G~v~~v~i~~~~~tg~~----~g~afV~f~~~~~a~~Al~~l~g~~i 262 (306)
..++.|.++|+ |.+++ +.+|++.+.+| |.|.+|.|.....++.- --.-||+|.....+.+|..+|+|+.|
T Consensus 444 ~~S~VivLRNMV~P~DiDe~LegEi~EECgKf-G~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfF 522 (544)
T KOG0124|consen 444 QESTVIVLRNMVDPKDIDEDLEGEITEECGKF-GAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFF 522 (544)
T ss_pred ccCcEEEEeccCChhhhhhHHHHHHHHHHhcc-cceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhcccee
Confidence 12346777776 44444 45788999998 99999988766554321 12479999999999999999999999
Q ss_pred CCeeEEEee
Q 021890 263 MGRPLRVAP 271 (306)
Q Consensus 263 ~g~~l~v~~ 271 (306)
+||+|....
T Consensus 523 gGr~VvAE~ 531 (544)
T KOG0124|consen 523 GGRKVVAEV 531 (544)
T ss_pred cCceeehhh
Confidence 999987654
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.6e-15 Score=105.31 Aligned_cols=70 Identities=34% Similarity=0.604 Sum_probs=66.6
Q ss_pred eeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 197 l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
|||+|||..+++++|+++|..| |.|..+.+..+ .++..+|+|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~-g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF-GKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT-STEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh-hhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999997 99999999987 5688999999999999999999999999999999986
No 51
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8e-16 Score=127.01 Aligned_cols=82 Identities=27% Similarity=0.314 Sum_probs=79.4
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+..+|.|.||+.++++++|+++|.+| |.|..|.+.+|.+||.++|||||.|.+.++|.+||..|||.-++.-.|+|.|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f-g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF-GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc-CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred cch
Q 021890 273 RQF 275 (306)
Q Consensus 273 ~~~ 275 (306)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 985
No 52
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=1.8e-15 Score=105.30 Aligned_cols=70 Identities=34% Similarity=0.605 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 103 LVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 103 l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
|||+|||+++++++|+++|+.||.|..+.+..++.|..+|+|||+|.+.++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987789999999999999999999999888999999885
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.3e-15 Score=125.84 Aligned_cols=82 Identities=24% Similarity=0.462 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
.+..+|.|.||+.++++++|+++|..||.|.++.+.+++ +|.++|||||.|.+.++|.+||+.|||+-+++-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 367789999999999999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred ccc
Q 021890 177 KIK 179 (306)
Q Consensus 177 ~~~ 179 (306)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.6e-15 Score=138.32 Aligned_cols=177 Identities=21% Similarity=0.274 Sum_probs=140.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
......+||+|||...++.++++++..||.+....++.+. +|.++||||.+|.+......|+..|||..++++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 4456789999999999999999999999999999998887 589999999999999999999999999999999999998
Q ss_pred ecccCCCCCCC---------------CCCCCCccceeeecCCC--h--------hhhHHHHHHHHHhcCCCeeEEEEEec
Q 021890 176 AKIKKKNPFPP---------------VQPKPFATFNLFIANLS--F--------EARAKDLREFFISEGWDVVSAEVIFH 230 (306)
Q Consensus 176 ~~~~~~~~~~~---------------~~~~~~~~~~l~V~nL~--~--------~~t~~~l~~~F~~~~G~v~~v~i~~~ 230 (306)
+.......... .+....++..|.+.|+= . .---++++.-+.+| |.|..|.|.++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~-g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF-GAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc-CceeEEecCCC
Confidence 87654322111 12333445566666641 1 11124556666777 89999999877
Q ss_pred C---CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 231 D---NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 231 ~---~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
. ...-..|..||+|.+.+++++|..+|+|++|.||.|-.+|-..
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 2 2234567899999999999999999999999999999998543
No 55
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.61 E-value=3.1e-14 Score=125.43 Aligned_cols=185 Identities=21% Similarity=0.310 Sum_probs=145.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceE-EEEEeCCHHHHHHHHHHhcCCcccC--eEEEEeee
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL-AFVTMGSPDEATAALNNLESYEFEG--RTLKVNYA 176 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~-afV~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~~ 176 (306)
--+++|+|+-+-++-+-|..+|+.||.|..|.-... +.|| |+|.|.+.+.|+.|...|+|..|.+ ..|+|.|+
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 346789999999999999999999999988754432 3555 9999999999999999999988843 35666655
Q ss_pred cc----------cCCCCCCC-----------------------------------------C-CCCCCc--cceeeecCC
Q 021890 177 KI----------KKKNPFPP-----------------------------------------V-QPKPFA--TFNLFIANL 202 (306)
Q Consensus 177 ~~----------~~~~~~~~-----------------------------------------~-~~~~~~--~~~l~V~nL 202 (306)
+. +......+ . ..-..+ +..|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 42 22211100 0 000011 366888888
Q ss_pred C-hhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhhhhcc
Q 021890 203 S-FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQTK 281 (306)
Q Consensus 203 ~-~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~~~ 281 (306)
. ..+|.+.|..+|.-| |.|.+|+|..+. +..|+|.|.+...|.-|+++|+|..+.|+.|+|.+++...-.-++
T Consensus 306 n~~~VT~d~LftlFgvY-GdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~ 379 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVY-GDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPR 379 (492)
T ss_pred chhccchhHHHHHHhhh-cceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCC
Confidence 5 578999999999997 999999999764 246999999999999999999999999999999999999988888
Q ss_pred ccCCCCCCccccc
Q 021890 282 EGLHSDETSDDLN 294 (306)
Q Consensus 282 ~~~~~~~~~~~~~ 294 (306)
++.++.....|+.
T Consensus 380 egq~d~glT~dy~ 392 (492)
T KOG1190|consen 380 EGQEDQGLTKDYG 392 (492)
T ss_pred CCCccccccccCC
Confidence 8888766666554
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.6e-15 Score=124.85 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
..-++||||||+|.+..+.|++.|++||+|++..++.|+ +|+++|||||+|.+.++|.+|++. ..-.|+||+..|+++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 345789999999999999999999999999999999998 699999999999999999999995 455689999999988
Q ss_pred cc
Q 021890 177 KI 178 (306)
Q Consensus 177 ~~ 178 (306)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 76
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=4.1e-15 Score=141.32 Aligned_cols=116 Identities=23% Similarity=0.235 Sum_probs=97.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhc--CCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQH--GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~--G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
.++|||+||++++++++|+++|+.| |.|++|.++ ++||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4789999999999999999999999 999999876 6799999999999999999999999999999999998
Q ss_pred ccCCCCC-------------------CCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCee
Q 021890 178 IKKKNPF-------------------PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVV 223 (306)
Q Consensus 178 ~~~~~~~-------------------~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~ 223 (306)
+...... ...........+++++|+++..+++-+.++|... |.|.
T Consensus 306 p~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~-g~~~ 369 (578)
T TIGR01648 306 PVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMP-GPIR 369 (578)
T ss_pred CCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccC-cccc
Confidence 7543310 0011122346789999999999999999999974 6543
No 58
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=4.1e-15 Score=127.54 Aligned_cols=83 Identities=35% Similarity=0.621 Sum_probs=75.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|+|+|||+...+-||+.+|.+||.|.+|.|+-+..| +||||||+|++.++|++|..+|||..+.||+|.|+.+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 334578999999999999999999999999999999876654 6999999999999999999999999999999999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
..+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 8763
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=9.3e-15 Score=124.24 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+.. .+|||||+|.+.++|+.|+. |+|..|.|+.|+|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 47899999999999999999999999999999987753 57999999999999999997 9999999999999998754
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=8.5e-15 Score=115.18 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
.++||||||+..+++.||...|..||++..+.|... +.|||||+|++..+|+.|+..|+|..|.|..|+|+++...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 578999999999999999999999999999988775 4899999999999999999999999999999999998876
Q ss_pred CC
Q 021890 180 KK 181 (306)
Q Consensus 180 ~~ 181 (306)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 54
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=1.8e-14 Score=100.21 Aligned_cols=70 Identities=34% Similarity=0.538 Sum_probs=64.8
Q ss_pred eeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 197 l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
|+|+|||+++++++|+++|..+ |.|..+.+..+.. |.++|+|||+|.+.++|.+|+..++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS-SBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999997 8999999999877 89999999999999999999999999999999885
No 62
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.6e-13 Score=124.65 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=117.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC--C--CCcce---EEEEEeCCHHHHHHHHHHhcCCcccCe
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--K--NRNRG---LAFVTMGSPDEATAALNNLESYEFEGR 169 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~--~--~~~~g---~afV~f~~~~~a~~ai~~l~~~~~~g~ 169 (306)
..-.++||||+||++++|++|...|..||.+. +.+.... . -.++| |+|+.|+++..+...+..... ...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 34478999999999999999999999999874 3443211 1 13566 999999999998887765432 333
Q ss_pred EEEEeeecccCCC--------------CCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCC
Q 021890 170 TLKVNYAKIKKKN--------------PFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR 235 (306)
Q Consensus 170 ~l~v~~~~~~~~~--------------~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~ 235 (306)
.+.+....+..+. -.......-++.+||||++||.-++.++|..+|+..+|.|+++-|-.|++-+.
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 3333222222111 11112223345799999999999999999999997679999999999988899
Q ss_pred CccEEEEEeCCHHHHHHHHHH
Q 021890 236 SAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 236 ~~g~afV~f~~~~~a~~Al~~ 256 (306)
++|-|-|.|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 999999999999999999984
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3e-14 Score=122.32 Aligned_cols=86 Identities=28% Similarity=0.484 Sum_probs=77.3
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|+|+|||+...+.||+..|++| |.|.+|+|+.+.. -+||||||.|++.+||++|..+|||..|.||+|+|..|.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kf-G~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKF-GKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhh-CceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4789999999999999999999998 9999999998763 479999999999999999999999999999999999998
Q ss_pred chhhhhccc
Q 021890 274 QFARLQTKE 282 (306)
Q Consensus 274 ~~~~~~~~~ 282 (306)
.+.--.+++
T Consensus 173 arV~n~K~~ 181 (376)
T KOG0125|consen 173 ARVHNKKKK 181 (376)
T ss_pred hhhccCCcc
Confidence 875433333
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.4e-14 Score=119.30 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=74.9
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
-.+|||++|+|.+..+.|++.|++| |+|++..|+.|..+|+++|||||.|.+.++|.+|++ --+-.|+||+..|.+|-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhh
Confidence 3579999999999999999999998 999999999999999999999999999999999997 36789999999999875
Q ss_pred chhh
Q 021890 274 QFAR 277 (306)
Q Consensus 274 ~~~~ 277 (306)
-..+
T Consensus 90 lg~~ 93 (247)
T KOG0149|consen 90 LGGK 93 (247)
T ss_pred hcCc
Confidence 5333
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.8e-14 Score=128.45 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=72.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCH--HHHHHHHHHhcCCcccCeEEEEe
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP--DEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~--~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....+||||||++.+++++|+.+|..||.|.++.|++ .+| +|||||+|.+. .++.+||..|||..|.|+.|+|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34457899999999999999999999999999999983 356 99999999987 78999999999999999999999
Q ss_pred eeccc
Q 021890 175 YAKIK 179 (306)
Q Consensus 175 ~~~~~ 179 (306)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99764
No 66
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.54 E-value=2.3e-14 Score=125.22 Aligned_cols=171 Identities=19% Similarity=0.312 Sum_probs=135.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhh----cCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQ----HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~----~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
-.|.+++||+++++.++.+||.. -|..+.+.++...+|+..|-|||.|..+++|+.|+.. |...|+-|.|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 46889999999999999999973 2346778888888999999999999999999999995 777777777776554
Q ss_pred cccC------------CCC--CCC--------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeE--EEEEecCC
Q 021890 177 KIKK------------KNP--FPP--------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS--AEVIFHDN 232 (306)
Q Consensus 177 ~~~~------------~~~--~~~--------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~--v~i~~~~~ 232 (306)
.... -.. ..+ .-+......+|.+++||+..+.++|.+||..|.-.|.. |.++.+.+
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 3211 000 000 00111225689999999999999999999998656665 66666554
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 233 PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 233 tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
|++.|-|||+|.+.++|..|..+++.+..++|.|.|-.+-
T Consensus 321 -GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 321 -GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred -CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 8999999999999999999999999998899999998753
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2e-14 Score=107.30 Aligned_cols=92 Identities=23% Similarity=0.364 Sum_probs=80.8
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
+++|||+||...++|++|.++|.+ +|.|..|.+-.|..+..+.|||||+|-+.++|..|++-++|..++.++|+|.|.-
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 689999999999999999999998 6999999888998888999999999999999999999999999999999999965
Q ss_pred chh-hhhccccCCC
Q 021890 274 QFA-RLQTKEGLHS 286 (306)
Q Consensus 274 ~~~-~~~~~~~~~~ 286 (306)
-.. .++-..+++.
T Consensus 115 GF~eGRQyGRG~sG 128 (153)
T KOG0121|consen 115 GFVEGRQYGRGKSG 128 (153)
T ss_pred cchhhhhhcCCCCC
Confidence 443 2344444443
No 68
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=1.4e-14 Score=116.71 Aligned_cols=83 Identities=31% Similarity=0.431 Sum_probs=78.6
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
...+|.|-||-+.++.++|+.+|++| |.|-+|.|.+|.-|+.++|||||.|....+|+.|+++|+|..++|+.|+|.+|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekY-G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKY-GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHh-CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 35789999999999999999999997 99999999999999999999999999999999999999999999999999998
Q ss_pred cchh
Q 021890 273 RQFA 276 (306)
Q Consensus 273 ~~~~ 276 (306)
+-..
T Consensus 91 rygr 94 (256)
T KOG4207|consen 91 RYGR 94 (256)
T ss_pred hcCC
Confidence 7543
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=1.2e-13 Score=95.41 Aligned_cols=72 Identities=29% Similarity=0.588 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
+|||+|||..+++++|+++|+.||.+..+.+..+. +.++|+|||+|.+.++|++|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998776 7789999999999999999999999999999998874
No 70
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=8.3e-14 Score=100.17 Aligned_cols=81 Identities=28% Similarity=0.413 Sum_probs=73.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
+.-.+.|||.|||+.+|.++..++|.+||.|..|+|-..+ ..+|.|||.|++..+|.+|++.|+|..+.++.+.|-+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3346789999999999999999999999999999986554 34899999999999999999999999999999999987
Q ss_pred ccc
Q 021890 177 KIK 179 (306)
Q Consensus 177 ~~~ 179 (306)
.+.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 754
No 71
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.7e-15 Score=119.61 Aligned_cols=81 Identities=25% Similarity=0.445 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
++.-|||||||+..||.||..+|++||+|++|.+++|+ +|+++||||+.|++..+..-|+..|||..|.||.|+|.+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45679999999999999999999999999999999998 69999999999999999999999999999999999999765
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 43
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.51 E-value=4.6e-13 Score=118.98 Aligned_cols=76 Identities=20% Similarity=0.431 Sum_probs=67.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..++||+||.+.+....|.+.|.-.|.|..+.+-.++.|.++|||.++|.++-+|-.||..|++.-+..++..++.
T Consensus 215 ~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 215 HNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 4569999999999999999999999999999999999999999999999999999999998887655555555544
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=8.7e-14 Score=118.07 Aligned_cols=83 Identities=18% Similarity=0.377 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
.+-++|||+-|+++++|..|+..|+.||+|+.|+|++++ +|+++|||||+|+++.+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 457899999999999999999999999999999999997 8999999999999999999999999999999999999987
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
....
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 6543
No 74
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=115.71 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
..+|||+||++.+|+++|+++|+.||.|.+|.|+++ +..++||||+|.++++|+.|+. |+|..|.|+.|.|..+...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 478999999999999999999999999999999987 4556899999999999999997 9999999999999987643
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=9.5e-14 Score=118.11 Aligned_cols=78 Identities=23% Similarity=0.449 Sum_probs=71.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||+||++.+++++|+++|+.| |.|.+|+|+.+.. ++|||||+|.+.++|..|+. |+|..|.|+.|+|.+++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~-G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS-GDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 4689999999999999999999985 9999999998754 57999999999999999995 99999999999999987
Q ss_pred chh
Q 021890 274 QFA 276 (306)
Q Consensus 274 ~~~ 276 (306)
...
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 654
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.2e-13 Score=124.30 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=73.0
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCH--HHHHHHHHHhCCceeCCeeEEEe
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK--KVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~--~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
...+||||||++.+++++|..+|..| |.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..++|+.|+|.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeF-GsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPM-GTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 35789999999999999999999998 9999999994 456 99999999987 78999999999999999999999
Q ss_pred eCcchh
Q 021890 271 PSRQFA 276 (306)
Q Consensus 271 ~a~~~~ 276 (306)
.|++..
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 999876
No 77
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.7e-13 Score=116.40 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=80.2
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
...+-++|||+-|++.++|..|+..|+.| |.|+.|.+++|..||+++|||||+|.+..+...|.+..+|..|+|+.|.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~Y-G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKY-GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhc-CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34567999999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred eeCcchh
Q 021890 270 APSRQFA 276 (306)
Q Consensus 270 ~~a~~~~ 276 (306)
.+-+...
T Consensus 176 DvERgRT 182 (335)
T KOG0113|consen 176 DVERGRT 182 (335)
T ss_pred Eeccccc
Confidence 9865543
No 78
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2e-13 Score=98.21 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=74.7
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
++.|||.|||+.+|.++..++|.+| |.|..|+|-..++ -+|.|||.|++..+|.+|+++|+|..+.++.|.|-|-.
T Consensus 18 nriLyirNLp~~ITseemydlFGky-g~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKY-GTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcc-cceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 6789999999999999999999998 9999999976655 48999999999999999999999999999999999987
Q ss_pred chhhhh
Q 021890 274 QFARLQ 279 (306)
Q Consensus 274 ~~~~~~ 279 (306)
+....+
T Consensus 94 ~~~~~~ 99 (124)
T KOG0114|consen 94 PEDAFK 99 (124)
T ss_pred HHHHHH
Confidence 766543
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=6.7e-14 Score=112.89 Aligned_cols=80 Identities=29% Similarity=0.536 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
....|.|-||.+.++.++|+.+|++||.|.+|.|.++. ++.++|||||.|.+..+|+.|++.|+|.+++|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34679999999999999999999999999999999998 79999999999999999999999999999999999999886
Q ss_pred c
Q 021890 178 I 178 (306)
Q Consensus 178 ~ 178 (306)
=
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 80
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=6.1e-13 Score=118.60 Aligned_cols=125 Identities=25% Similarity=0.304 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHhcCCcccCeEEEEeeecccCCCCCCCC-CCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEE
Q 021890 149 GSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPV-QPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227 (306)
Q Consensus 149 ~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~-~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i 227 (306)
.+.++|.++|.+-. |..|.|+-...+-..+.+.- .......+.|||+.||.++.|++|.-+|++. |.|-++++
T Consensus 42 ~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEki-G~I~elRL 115 (506)
T KOG0117|consen 42 QSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKI-GKIYELRL 115 (506)
T ss_pred ccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhc-cceeeEEE
Confidence 34678888876533 45778887776655444331 1222335789999999999999999999996 99999999
Q ss_pred EecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEeeCcchhhhh
Q 021890 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM-GRPLRVAPSRQFARLQ 279 (306)
Q Consensus 228 ~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~v~~a~~~~~~~ 279 (306)
++|+.+|.+||||||.|.+.++|++|++.||+.+|. |+.|.|..+...-|.=
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLF 168 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLF 168 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeE
Confidence 999999999999999999999999999999999986 8999998876665543
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=108.74 Aligned_cols=78 Identities=27% Similarity=0.376 Sum_probs=72.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.+.|||+||+..+++.+|...|..| |.+..|.|... +.|||||+|++..||..|+..|+|..|.|..|+|+++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y-G~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY-GPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc-CcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 5789999999999999999999997 99999999874 57999999999999999999999999999999999987
Q ss_pred chhh
Q 021890 274 QFAR 277 (306)
Q Consensus 274 ~~~~ 277 (306)
-..+
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7665
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.9e-13 Score=92.36 Aligned_cols=72 Identities=38% Similarity=0.590 Sum_probs=67.1
Q ss_pred eeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 196 ~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
+|+|+|||..+++++|+++|.+| |.|..+.+..+. +.++|+|||+|.+.++|.+|+..|+|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~-g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF-GPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc-CCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999997 999999988776 7789999999999999999999999999999999874
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=7.6e-13 Score=91.90 Aligned_cols=74 Identities=32% Similarity=0.598 Sum_probs=69.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
+|+|+|||+.+++++|+++|+.||.|..+.+..+..+.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887778899999999999999999999999999999999874
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.6e-14 Score=114.32 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=81.2
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||++|...+++..|...|-+| |.|.+|.++.|..+++.||||||+|.-.+||.+|+..||+.++.||.|+|.||+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPF-GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPF-GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccc-cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 5789999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhh
Q 021890 274 QFARLQ 279 (306)
Q Consensus 274 ~~~~~~ 279 (306)
+..-++
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 977544
No 85
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=7.5e-15 Score=116.05 Aligned_cols=83 Identities=19% Similarity=0.443 Sum_probs=77.6
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
+.-|||+|||+.+||.||..+|.+| |+|+.|.+++|..||+++||||+.|++..+...|+..|||..|.||.|+|...-
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqy-Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQY-GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeecc-CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4679999999999999999999998 999999999999999999999999999999999999999999999999998765
Q ss_pred chhh
Q 021890 274 QFAR 277 (306)
Q Consensus 274 ~~~~ 277 (306)
....
T Consensus 114 ~Yk~ 117 (219)
T KOG0126|consen 114 NYKK 117 (219)
T ss_pred cccC
Confidence 4443
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=6.4e-13 Score=91.43 Aligned_cols=70 Identities=34% Similarity=0.608 Sum_probs=65.6
Q ss_pred EcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 105 AQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 105 V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
|+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|.+|++.+++..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999998877 48899999999999999999999999999999999874
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=6.8e-13 Score=91.28 Aligned_cols=71 Identities=34% Similarity=0.578 Sum_probs=66.9
Q ss_pred ecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 199 IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 199 V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
|+|||..+++++|+++|+.| |.|..+.+..++.++.++|+|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF-GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh-CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999997 999999999988788999999999999999999999999999999999874
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.8e-13 Score=102.06 Aligned_cols=85 Identities=25% Similarity=0.360 Sum_probs=78.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....-.|||.++...+++++|.+.|..||+|+.|.+..++ +|..+|||+|+|++.++|++|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3445689999999999999999999999999999998887 799999999999999999999999999999999999999
Q ss_pred ecccCC
Q 021890 176 AKIKKK 181 (306)
Q Consensus 176 ~~~~~~ 181 (306)
+-.+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876543
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.7e-13 Score=123.54 Aligned_cols=176 Identities=23% Similarity=0.374 Sum_probs=144.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhc-----------CC-eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQH-----------GT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY 164 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~-----------G~-i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~ 164 (306)
....+.++|+++++.++++....+|..- |+ +..+.+-. .+.|||++|.+.++|..|+. +++.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~-~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMA-LDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhc-ccch
Confidence 4456789999999999999999999854 33 55555543 38899999999999999998 7999
Q ss_pred cccCeEEEEeeecccCCCCC--------------CCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEec
Q 021890 165 EFEGRTLKVNYAKIKKKNPF--------------PPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230 (306)
Q Consensus 165 ~~~g~~l~v~~~~~~~~~~~--------------~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~ 230 (306)
.+.|+.+++.--......+. ............++|++||..++++++.++...| |.+....++.+
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f-g~lk~f~lv~d 324 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF-GPLKAFRLVKD 324 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc-ccchhheeecc
Confidence 99999888875543322111 0111222334679999999999999999999997 89999999999
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhhhh
Q 021890 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 231 ~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
..+|.++||||.+|.+......|+..|||..++++.|.|..|-......
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 9999999999999999999999999999999999999999986655543
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=5.2e-13 Score=100.63 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=79.6
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.....|||.++...+++++|.+.|..| |+|+.+.+-.|..||..+|||+|+|.+.+.|++|+..|||..+.|..|.|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dy-GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADY-GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhc-ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 346889999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
+--+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 865443
No 91
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=5.4e-13 Score=122.45 Aligned_cols=80 Identities=30% Similarity=0.599 Sum_probs=76.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
+.|||||+|+++++++|.++|+..|.|.+++++.|+ +|+++||||++|.+.++|..|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 779999999999999999999999999999999998 6999999999999999999999999999999999999998754
Q ss_pred C
Q 021890 180 K 180 (306)
Q Consensus 180 ~ 180 (306)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=7e-13 Score=121.71 Aligned_cols=82 Identities=27% Similarity=0.508 Sum_probs=78.8
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
+.+||+|+|+++++++|.++|... |.|.+++++.|+.||+++||||++|.+.++|..|++.|||..+.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~-g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV-GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc-CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 789999999999999999999996 9999999999999999999999999999999999999999999999999999876
Q ss_pred hhh
Q 021890 275 FAR 277 (306)
Q Consensus 275 ~~~ 277 (306)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 665
No 93
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=114.53 Aligned_cols=80 Identities=35% Similarity=0.595 Sum_probs=76.9
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
..+|||+|||..+++++|.++|..| |.|..+.+..+..+|.++|+|||+|.+.++|..|++.++|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~-g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF-GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc-CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999999999999999999997 999999999998899999999999999999999999999999999999999976
Q ss_pred c
Q 021890 274 Q 274 (306)
Q Consensus 274 ~ 274 (306)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.9e-13 Score=110.19 Aligned_cols=85 Identities=29% Similarity=0.470 Sum_probs=79.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++||||+|-..+++.-|...|-.||.|.+|.+..|. +++++|||||+|...|+|.+||..||+.++.||.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3467899999999999999999999999999999999887 699999999999999999999999999999999999999
Q ss_pred ecccCC
Q 021890 176 AKIKKK 181 (306)
Q Consensus 176 ~~~~~~ 181 (306)
+.+..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998643
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=2.5e-12 Score=107.82 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=70.0
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|+|+||++.+++++|++||..+ |.|.+|+|++|. ...++|||+|.+.++|..|+. |+|..|.|++|.|..+.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~-G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHC-GAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhc-CCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 5789999999999999999999974 999999999884 456899999999999999995 99999999999999876
Q ss_pred ch
Q 021890 274 QF 275 (306)
Q Consensus 274 ~~ 275 (306)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 53
No 96
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.38 E-value=9.4e-13 Score=104.38 Aligned_cols=79 Identities=28% Similarity=0.460 Sum_probs=75.8
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
..+|||+||+..++++.|+++|-+. |.|..+.+.+|..+...+|||||+|.++++|+.|++.||.-.+.||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqa-gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQA-GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhc-CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 5789999999999999999999985 999999999999999999999999999999999999999999999999999876
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=5.4e-12 Score=87.54 Aligned_cols=74 Identities=38% Similarity=0.610 Sum_probs=68.6
Q ss_pred eeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 196 ~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
+|+|+|||..+++++|+++|+.+ |.|..+.+..++.+ .++|+|||+|.+.++|..|++.++|..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~-g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF-GKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc-CCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999997 99999999987654 6789999999999999999999999999999999875
No 98
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.37 E-value=3.4e-12 Score=106.23 Aligned_cols=173 Identities=21% Similarity=0.253 Sum_probs=137.5
Q ss_pred CeEEEcCCCCCCCHHH-H--HHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 101 TRLVAQNVPWTSTHED-I--RALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~-L--~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
-..+++++-..+..+- | ...|+.+-.....+++++.-+.-.+++|+.|.....-.++-..-++..++-..|++.-..
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 3466777766665554 3 677887777777788888778889999999998888888877666666666665544333
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
...+ +........+..||++.|...++++.|...|.+| -.-...++++|..||+++||+||.|.+..|+..|+..|
T Consensus 177 swed---Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf-psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 177 SWED---PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF-PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccCC---cccccCccccceeecccccccccHHHHHHHHHhc-cchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 2221 2223344557899999999999999999999997 67788899999999999999999999999999999999
Q ss_pred CCceeCCeeEEEeeCcchhh
Q 021890 258 QGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 258 ~g~~i~g~~l~v~~a~~~~~ 277 (306)
+|..++.|+|.+..+.++.+
T Consensus 253 ~gkyVgsrpiklRkS~wkeR 272 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWKER 272 (290)
T ss_pred cccccccchhHhhhhhHHhh
Confidence 99999999999988877664
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.37 E-value=1e-11 Score=108.58 Aligned_cols=166 Identities=15% Similarity=0.137 Sum_probs=132.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHh--cCCcccCeEEEEeeec
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL--ESYEFEGRTLKVNYAK 177 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l--~~~~~~g~~l~v~~~~ 177 (306)
+..|.|++|-..++|.+|.+-++.||.|..+..+.. +..|.|+|++.+.|+.++..- +...+.|..-.++++.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 456999999999999999999999999998887765 778999999999999998732 4566788988888886
Q ss_pred ccCCCCCCCCCCCCCcccee--eecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 178 IKKKNPFPPVQPKPFATFNL--FIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l--~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
.+.-.... .....++..| .|-|--+.+|-+.|..+.... |.|.+|.|.+. +|. .|.|||++.+.|.+|..
T Consensus 106 sq~i~R~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~-GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 106 SQCIERPG--DESATPNKVLLFTILNPQYPITVDVLYTICNPQ-GKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKA 177 (494)
T ss_pred hhhhccCC--CCCCCCCeEEEEEeecCccccchhhhhhhcCCC-CceEEEEEEec--cce---eeEEeechhHHHHHHHh
Confidence 55433322 2222223444 444555688999999999995 99999988864 333 69999999999999999
Q ss_pred HhCCceeC-C-eeEEEeeCcchhhh
Q 021890 256 AFQGKLFM-G-RPLRVAPSRQFARL 278 (306)
Q Consensus 256 ~l~g~~i~-g-~~l~v~~a~~~~~~ 278 (306)
+|||..|. | +.|+|.||++..-.
T Consensus 178 alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 178 ALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred hcccccccccceeEEEEecCcceee
Confidence 99999776 4 89999999997643
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=4.4e-12 Score=88.08 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=55.5
Q ss_pred HHHHHHHHH----hcCCCeeEEE-EEecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 208 AKDLREFFI----SEGWDVVSAE-VIFHDNP--RRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 208 ~~~l~~~F~----~~~G~v~~v~-i~~~~~t--g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
+++|+++|. .| |.|.++. ++.++.+ |.++|+|||+|.+.++|.+|+..|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~f-G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYF-GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhc-CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568888888 87 9999995 7777666 8899999999999999999999999999999999863
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.36 E-value=5.7e-11 Score=103.91 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=129.7
Q ss_pred cCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..+.+.++|.+|.. .++-+.|..+|-.||.|.+|++++.+ .|.|.|++.+..+.++|+..||+..+-|.+|.|..
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 34567899999976 46889999999999999999999876 67899999999999999999999999999999998
Q ss_pred ecccCCCCCCC----------------------------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEE
Q 021890 176 AKIKKKNPFPP----------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV 227 (306)
Q Consensus 176 ~~~~~~~~~~~----------------------------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i 227 (306)
++...-....+ ...-..+++.|+.-|.|..+||+.|..+|....-...++++
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkv 439 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKV 439 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEe
Confidence 87542211110 12234567899999999999999999999975334455555
Q ss_pred EecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 021890 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264 (306)
Q Consensus 228 ~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 264 (306)
..-+ + ....-|++||++.++|..||.+||...|.+
T Consensus 440 Fp~k-s-erSssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 440 FPLK-S-ERSSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred eccc-c-cccccceeeeehHHHHHHHHHHhccccccC
Confidence 5433 2 223458999999999999999999998875
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=6.6e-12 Score=83.20 Aligned_cols=56 Identities=39% Similarity=0.684 Sum_probs=51.1
Q ss_pred HHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 117 IRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 117 L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
|.++|++||.|.++.+.... +++|||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997653 599999999999999999999999999999999986
No 103
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.31 E-value=1.2e-11 Score=82.01 Aligned_cols=56 Identities=32% Similarity=0.543 Sum_probs=50.2
Q ss_pred HHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 211 LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 211 l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
|+++|++| |.|..+.+..+. +++|||+|.+.++|.+|+..|||..++|++|+|.||
T Consensus 1 L~~~f~~f-G~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF-GEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT-S-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCc-ccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899998 999999887542 589999999999999999999999999999999986
No 104
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=6.2e-13 Score=108.26 Aligned_cols=149 Identities=17% Similarity=0.243 Sum_probs=126.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
.++|||+|+...++|+-|.++|-+.|+|..+.|..++++..+ ||||.|.++....-|++.+||..+.++.+.+.+-...
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 578999999999999999999999999999999888888877 9999999999999999999999999999988754432
Q ss_pred CCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 021890 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (306)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g 259 (306)
...+ |...++++.+.+.|..- |.+..+++..+.+ |+++.++|+.+......-.++....+
T Consensus 88 shap------------------ld~r~~~ei~~~v~s~a-~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 88 SHAP------------------LDERVTEEILYEVFSQA-GPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred Ccch------------------hhhhcchhhheeeeccc-CCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcc
Confidence 2221 66788999999999985 8999999988766 88999999999988888888887777
Q ss_pred ceeCCeeEEE
Q 021890 260 KLFMGRPLRV 269 (306)
Q Consensus 260 ~~i~g~~l~v 269 (306)
...--+.+.+
T Consensus 148 l~~~~~~~~~ 157 (267)
T KOG4454|consen 148 LELFQKKVTI 157 (267)
T ss_pred cCcCCCCccc
Confidence 6554444433
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=1.7e-12 Score=124.42 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=144.5
Q ss_pred ccccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 94 ~~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
..+....++||+|||+..+++.+|+..|..+|.|.+|.|....-+....||||.|.+...+-.|+..+.+..|....+++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 34566788999999999999999999999999999999977766777889999999999999999999998887777777
Q ss_pred eeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 021890 174 NYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (306)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~A 253 (306)
.+...+. ..+..+++++|+.++....|...|..| |.|..|.+-. ...||+|.|.+...++.|
T Consensus 446 glG~~ks-----------t~ttr~~sgglg~w~p~~~l~r~fd~f-Gpir~Idy~h------gq~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 446 GLGQPKS-----------TPTTRLQSGGLGPWSPVSRLNREFDRF-GPIRIIDYRH------GQPYAYIQYESPPAAQAA 507 (975)
T ss_pred ccccccc-----------ccceeeccCCCCCCChHHHHHHHhhcc-Ccceeeeccc------CCcceeeecccCccchhh
Confidence 7665422 226789999999999999999999998 9998876643 245999999999999999
Q ss_pred HHHhCCceeCC--eeEEEeeCcchhhhh
Q 021890 254 ISAFQGKLFMG--RPLRVAPSRQFARLQ 279 (306)
Q Consensus 254 l~~l~g~~i~g--~~l~v~~a~~~~~~~ 279 (306)
+..|.|..|+| +.++|.|+.......
T Consensus 508 ~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred HHHHhcCcCCCCCcccccccccCCCCCh
Confidence 99999999996 889999998766543
No 106
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.2e-12 Score=99.93 Aligned_cols=78 Identities=24% Similarity=0.333 Sum_probs=70.7
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||+|||.++.+.+|.++|-+| |.|..|.+-..+ .+.+||||+|++..+|..||..-+|..++|+.|+|.|++
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKy-g~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKY-GRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhh-cceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 5789999999999999999999998 999999875432 356899999999999999999999999999999999987
Q ss_pred ch
Q 021890 274 QF 275 (306)
Q Consensus 274 ~~ 275 (306)
..
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 65
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.25 E-value=4.9e-11 Score=107.93 Aligned_cols=168 Identities=23% Similarity=0.289 Sum_probs=130.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~-~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
....|.+++||+.||++||.+||+..-.+.. |.++.+..+++.|-|||.|++.+.|++|+. -|...|+.|.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4568999999999999999999998877665 556777789999999999999999999999 48888999999887654
Q ss_pred ccCCC-----------------------C---------------C------------------C---------------C
Q 021890 178 IKKKN-----------------------P---------------F------------------P---------------P 186 (306)
Q Consensus 178 ~~~~~-----------------------~---------------~------------------~---------------~ 186 (306)
..... . . . +
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 21000 0 0 0 0
Q ss_pred C--CCC-----------CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 021890 187 V--QPK-----------PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (306)
Q Consensus 187 ~--~~~-----------~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~A 253 (306)
. ... ......+++++||+..++.++..+|.. .....|.|...+ +|+..|-|+|+|.+.++|..|
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p~~v~i~ig~-dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNPYRVHIEIGP-DGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCceeEEEEeCC-CCccCCcceeecccchhhHhh
Confidence 0 000 011256899999999999999999996 356677776655 488999999999999999999
Q ss_pred HHHhCCceeCCeeEEEee
Q 021890 254 ISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 254 l~~l~g~~i~g~~l~v~~ 271 (306)
+.+ ++..+..+.|.+..
T Consensus 338 msk-d~anm~hrYVElFl 354 (510)
T KOG4211|consen 338 MGK-DGANMGHRYVELFL 354 (510)
T ss_pred hcc-CCcccCcceeeecc
Confidence 975 77888888877654
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.24 E-value=1.1e-10 Score=110.54 Aligned_cols=108 Identities=26% Similarity=0.384 Sum_probs=91.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
+++||||+|+..+++.||..+|+.||.|.+|.++.. +|+|||.+....+|.+|+..|+...+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 689999999999999999999999999999999855 999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHH
Q 021890 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216 (306)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~ 216 (306)
.... .........+-|.-||+..-.+++..+.+
T Consensus 496 G~ks----e~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 496 GPKS----EYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred Ccch----hhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 5443 22223344566777888766666777766
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.24 E-value=3.9e-11 Score=83.29 Aligned_cols=61 Identities=30% Similarity=0.521 Sum_probs=54.0
Q ss_pred HHHHHHHhh----hcCCeEEEE-EeecC-C--CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 114 HEDIRALFE----QHGTVLDIE-LSMHS-K--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 114 ~~~L~~~f~----~~G~i~~~~-~~~~~-~--~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
+++|+++|+ .||.|.++. +..++ + +.++|||||+|.+.++|.+|++.|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578899998 999999995 55544 4 8899999999999999999999999999999999863
No 110
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.1e-11 Score=105.87 Aligned_cols=85 Identities=26% Similarity=0.315 Sum_probs=80.9
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
+|...|||.-|.+-++.++|.-+|..| |.|.+|.|++|..||.+-.||||+|.+.+++.+|.-+|++..|++++|.|.|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrF-G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRF-GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhc-ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 456889999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
+.+..+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 877666
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.20 E-value=1.3e-11 Score=108.39 Aligned_cols=177 Identities=18% Similarity=0.258 Sum_probs=142.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|+|++.+.+.+.+...++..+|......+.... ...++|++++.|...+.+..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988877776544 57889999999999999999999433346666666666555
Q ss_pred ccCCCCCCC-CCCCCCccceee-ecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 178 IKKKNPFPP-VQPKPFATFNLF-IANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~l~-V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
......... .........+++ |++|+..+++++|+..|..+ |.|..+++..++.+|.++|+|+|+|.....+.+++.
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~-~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS-GEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCc-CcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 443211111 111122234444 99999999999999888875 999999999999999999999999999999999998
Q ss_pred HhCCceeCCeeEEEeeCcchhh
Q 021890 256 AFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
. +...+.|+++.+.+.++...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88999999999999877654
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=2.4e-12 Score=122.96 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=129.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++||.||+..+.+.+|...|..+|.+..+++.... .++.+|+||++|..++++.+||....+. +.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh---------
Confidence 34678999999999999999999999998888776444 5889999999999999999999954433 333
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
...++|.|+|+..|.++++.++..+ |.+.+.+++.... |+++|.|+|.|.+..++.+++...
T Consensus 736 ----------------K~~v~i~g~pf~gt~e~~k~l~~~~-gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 ----------------KISVAISGPPFQGTKEELKSLASKT-GNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred ----------------hhhhheeCCCCCCchHHHHhhcccc-CCccccchhhhhc-cccccceeccCCCcchhhhhcccc
Confidence 2359999999999999999999997 9999998776554 999999999999999999999999
Q ss_pred CCceeCCeeEEEeeCcchhh
Q 021890 258 QGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 258 ~g~~i~g~~l~v~~a~~~~~ 277 (306)
++..++-+.+.|..+.+...
T Consensus 798 d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred hhhhhhhcCccccccCCccc
Confidence 99999888888888776443
No 113
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.18 E-value=8.4e-11 Score=95.35 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=77.0
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
...++|..+|..+.+.++..+|.+|+|.|..+++.++..||.++|||||+|++.+.|.-|.+.||+..|.|+-|.|.+=-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 56699999999999999999999998999999999999999999999999999999999999999999999999999865
Q ss_pred ch
Q 021890 274 QF 275 (306)
Q Consensus 274 ~~ 275 (306)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 55
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.8e-11 Score=100.68 Aligned_cols=89 Identities=19% Similarity=0.372 Sum_probs=81.7
Q ss_pred ccccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 94 ~~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
..+.-+.+.|||..||....+.||..+|-.||.|++.++..|+ ++.+++||||.|++..+|+.||..|||+.|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 3455568999999999999999999999999999999999888 799999999999999999999999999999999999
Q ss_pred EeeecccCCC
Q 021890 173 VNYAKIKKKN 182 (306)
Q Consensus 173 v~~~~~~~~~ 182 (306)
|...+++...
T Consensus 359 VQLKRPkdan 368 (371)
T KOG0146|consen 359 VQLKRPKDAN 368 (371)
T ss_pred hhhcCccccC
Confidence 9998876543
No 115
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.13 E-value=1.6e-10 Score=95.22 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=72.3
Q ss_pred cceeeecCCChhhhHHHHHH----HHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 194 TFNLFIANLSFEARAKDLRE----FFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~----~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
..+|||.||+..+..++|+. +|++| |.|.+|...+ +.+.+|-|||.|.+.+.|..|+..|+|+.|.|++++|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqf-G~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQF-GKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhh-CCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 45999999999999888877 99998 9999987764 4678999999999999999999999999999999999
Q ss_pred eeCcchhh
Q 021890 270 APSRQFAR 277 (306)
Q Consensus 270 ~~a~~~~~ 277 (306)
.||+....
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99988764
No 116
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=7.8e-11 Score=99.98 Aligned_cols=79 Identities=27% Similarity=0.524 Sum_probs=72.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
.....+|+||||.+.++..||+..|++||+|.+|.|+ ++|+||.|+-.++|..|++.|++.++.|+.++|..+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 3456789999999999999999999999999999998 779999999999999999999999999999999998
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
..+-..
T Consensus 148 tsrlrt 153 (346)
T KOG0109|consen 148 TSRLRT 153 (346)
T ss_pred cccccc
Confidence 876443
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=3.2e-10 Score=91.97 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc-CCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQH-GTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~-G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....+||+.+|....+.++..+|.+| |.+..+++-+++ +|.++|||||+|++.+.|.-|-+.||++.|.|+-|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345679999999999999999999998 678888887776 799999999999999999999999999999999999998
Q ss_pred eccc
Q 021890 176 AKIK 179 (306)
Q Consensus 176 ~~~~ 179 (306)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7664
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.1e-10 Score=99.80 Aligned_cols=82 Identities=15% Similarity=0.314 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+...|||..|.+-++.++|.-+|+.||.|++|.++++. +|.+..||||+|++.+++++|.-.|++..|+++.|.|.|+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 45789999999999999999999999999999999998 69999999999999999999999999999999999999987
Q ss_pred ccC
Q 021890 178 IKK 180 (306)
Q Consensus 178 ~~~ 180 (306)
.-.
T Consensus 318 SVs 320 (479)
T KOG0415|consen 318 SVS 320 (479)
T ss_pred hhh
Confidence 543
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=1.6e-09 Score=95.30 Aligned_cols=173 Identities=20% Similarity=0.218 Sum_probs=128.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEee-cCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSM-HSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~-~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+...|..++|||..++.++..+|+......-.+.+. ...|+..|.|.|.|.+.|.-+-|++ -+...+.++.|.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccC
Confidence 345678899999999999999998655443333333 3357778999999999999999999 48888999999998776
Q ss_pred ccCCCCCCC------CCCCC-CccceeeecCCChhhhHHHHHHHHHh---cCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 021890 178 IKKKNPFPP------VQPKP-FATFNLFIANLSFEARAKDLREFFIS---EGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (306)
Q Consensus 178 ~~~~~~~~~------~~~~~-~~~~~l~V~nL~~~~t~~~l~~~F~~---~~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 247 (306)
...--.... ..... ...-.|.+++||++.++.++.+||.+ ..|..+.|-+++.++ |++.|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCH
Confidence 543211100 00000 11346889999999999999999963 224566676776655 89999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 248 KVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 248 ~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
++|+.|+.+ |...++-|.|.+-.+..
T Consensus 217 e~aq~aL~k-hrq~iGqRYIElFRSTa 242 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIELFRSTA 242 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHhH
Confidence 999999986 66677778887765543
No 120
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=8.1e-10 Score=101.63 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=116.7
Q ss_pred ccccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 94 ~~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
.......++|+|-|||..|++++|..+|+.||+|+.|+..+.. +|.+||+|.|..+|++|+++|++..|.|+.|+.
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK----RGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 3345667899999999999999999999999999998776553 889999999999999999999999999999983
Q ss_pred eeecccCCCCCC-------------CCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEE
Q 021890 174 NYAKIKKKNPFP-------------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYG 240 (306)
Q Consensus 174 ~~~~~~~~~~~~-------------~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~a 240 (306)
............ ...+.+.+...++.- |++..+.-.++..|.- .|.+.. +- ++.-.-.-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~-~~~~~~-~~-----~~~~~hq~ 216 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSV-DGSSPG-RE-----TPLLNHQR 216 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhc-cCcccc-cc-----ccchhhhh
Confidence 222211111000 011222222334333 8888887655566654 476654 21 12222256
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 241 FVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 241 fV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
|++|.+..++..+...+ |+.+.|....+.++.+
T Consensus 217 ~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 78888888886666533 7888888888888776
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=5.8e-09 Score=96.01 Aligned_cols=85 Identities=26% Similarity=0.377 Sum_probs=76.4
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 95 ~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
......+.|||.+|+..+...+|+.+|++||.|+..+++.+. +--.++|+||++.+.++|.++|..|+...|+|+.|.|
T Consensus 400 grs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 400 GRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 334557899999999999999999999999999999998775 4556899999999999999999999999999999999
Q ss_pred eeeccc
Q 021890 174 NYAKIK 179 (306)
Q Consensus 174 ~~~~~~ 179 (306)
+.++..
T Consensus 480 EkaKNE 485 (940)
T KOG4661|consen 480 EKAKNE 485 (940)
T ss_pred eecccC
Confidence 988754
No 122
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.93 E-value=4.7e-09 Score=89.20 Aligned_cols=85 Identities=21% Similarity=0.419 Sum_probs=77.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
+....+|+|.||++.|+++||+++|..||.+..+.+..++.|.+.|.|-|.|...++|.+|++.++|..++|+.|++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34457799999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65443
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.93 E-value=2.4e-09 Score=101.79 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=71.0
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
++||||++|+..+++.||..+|+.| |+|.+|.++. ++|+|||.+.+..+|.+|+.+|++..+.++.|+|.||.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef-GeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF-GEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc-ccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 5799999999999999999999997 9999998874 58999999999999999999999999999999999997
Q ss_pred chh
Q 021890 274 QFA 276 (306)
Q Consensus 274 ~~~ 276 (306)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 654
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=3.3e-09 Score=92.29 Aligned_cols=79 Identities=27% Similarity=0.344 Sum_probs=69.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHh-cCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL-ESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l-~~~~~~g~~l~v~ 174 (306)
++....+||||+|-..+++.+|++.|.+||.|+.+.+... +++|||+|.+.++|+.|...+ +...|+|++|.|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 4455679999999999999999999999999999999866 789999999999999887754 5566799999999
Q ss_pred eeccc
Q 021890 175 YAKIK 179 (306)
Q Consensus 175 ~~~~~ 179 (306)
|..+.
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=9.2e-09 Score=89.58 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=68.7
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH-hCCceeCCeeEE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA-FQGKLFMGRPLR 268 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~-l~g~~i~g~~l~ 268 (306)
.+..-.+|||++|...+++.+|++.|.+| |+|.++.+... +++|||+|.+.++|..|.++ ++...|+|++|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqy-Geirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQY-GEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhc-CCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 33345789999999999999999999997 99999999864 56899999999999988765 555678999999
Q ss_pred EeeCcchh
Q 021890 269 VAPSRQFA 276 (306)
Q Consensus 269 v~~a~~~~ 276 (306)
|.|++++.
T Consensus 297 i~Wg~~~~ 304 (377)
T KOG0153|consen 297 IKWGRPKQ 304 (377)
T ss_pred EEeCCCcc
Confidence 99999933
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.85 E-value=2.1e-08 Score=82.41 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=69.7
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeeEEEe
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM---GRPLRVA 270 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~---g~~l~v~ 270 (306)
-++|||.+||.++..-+|+.+|..|.|--...--..+.....++.+|||.|.+..+|.+|+.+|||..|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5899999999999999999999998764333222333333456789999999999999999999999997 8999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
+|+.-.+..
T Consensus 114 lAKSNtK~k 122 (284)
T KOG1457|consen 114 LAKSNTKRK 122 (284)
T ss_pred ehhcCcccc
Confidence 987766544
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.83 E-value=6.4e-10 Score=98.86 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=124.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCC-cccCeEEEEeeeccc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY-EFEGRTLKVNYAKIK 179 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~-~~~g~~l~v~~~~~~ 179 (306)
..+|+|||.+.++..+|..+|...-.-.+-.++.. .||+||.+.+...|.+|++.++|. .+.|+.+.+.+..++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 46999999999999999999986533222223322 789999999999999999999984 579999999998876
Q ss_pred CCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEE-ecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 021890 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVI-FHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (306)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~-~~~~tg~~~g~afV~f~~~~~a~~Al~~l~ 258 (306)
... .+.+-|.|+|+...++.|..+...| |.++.|..+ .++++ -..-|.|...+.+..|+.+|+
T Consensus 77 kqr-----------srk~Qirnippql~wevld~Ll~qy-g~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 77 KQR-----------SRKIQIRNIPPQLQWEVLDSLLAQY-GTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred HHH-----------hhhhhHhcCCHHHHHHHHHHHHhcc-CCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhc
Confidence 654 4669999999999999999999997 899998764 33332 234578999999999999999
Q ss_pred CceeCCeeEEEeeC
Q 021890 259 GKLFMGRPLRVAPS 272 (306)
Q Consensus 259 g~~i~g~~l~v~~a 272 (306)
|..+.+..++|.|-
T Consensus 141 g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 141 GPQLENQHLKVGYI 154 (584)
T ss_pred chHhhhhhhhcccC
Confidence 99999999999994
No 128
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.77 E-value=6.2e-08 Score=70.80 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=72.4
Q ss_pred ceeeecCCChhhhHHHHHHHHHh-cCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC----CeeEEE
Q 021890 195 FNLFIANLSFEARAKDLREFFIS-EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM----GRPLRV 269 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~-~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~----g~~l~v 269 (306)
.+|+|+|+|...+.++|.+++.. +.|....+.++.|..++.+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 57999999999999999988874 3367777888999888999999999999999999999999999876 588899
Q ss_pred eeCcchhh
Q 021890 270 APSRQFAR 277 (306)
Q Consensus 270 ~~a~~~~~ 277 (306)
.||+-..+
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99876443
No 129
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.77 E-value=2.4e-08 Score=91.52 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
.....|||+|||.+++.++|+++|..||.|+...|.... .++..+||||+|.+.++++.||.+ +...++|++|.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 344559999999999999999999999999988886544 455559999999999999999995 789999999999976
Q ss_pred ccc
Q 021890 177 KIK 179 (306)
Q Consensus 177 ~~~ 179 (306)
...
T Consensus 365 ~~~ 367 (419)
T KOG0116|consen 365 RPG 367 (419)
T ss_pred ccc
Confidence 653
No 130
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.73 E-value=1.4e-08 Score=89.81 Aligned_cols=153 Identities=20% Similarity=0.210 Sum_probs=106.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...+||||+||.++++++|++.|.+||.|..+.++.|. +.+++||+||.|.+++.+++++. ..-..|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999888887 58999999999999999999998 68899999999999999
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEE-------EEEecCCCCCCccEEEEEeCCHHHH
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSA-------EVIFHDNPRRSAGYGFVSFKSKKVA 250 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v-------~i~~~~~tg~~~g~afV~f~~~~~a 250 (306)
++........... ......|+....+.-.|...|+-| |.+... .. +.... .+.+++|..|.+....
T Consensus 175 pk~~~~~~~~~~~----~~~~~~~~g~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~-~~~~~-~~~g~g~~~~~~~~~~ 247 (311)
T KOG4205|consen 175 PKEVMQSTKSSVS----TRGKGNNLGNGRTGFFLKKYFKGY-GPVGMSDYGGRPVGR-RYGPL-FNGGSGYPEFGNSGLG 247 (311)
T ss_pred chhhccccccccc----cccccccccccccccccchhcccc-Ccccccccccccccc-ccccc-cCCCccccccCccccc
Confidence 8876543321111 011111233222333344444433 222100 00 11111 3578899999987777
Q ss_pred HHHHHHhCC
Q 021890 251 ETAISAFQG 259 (306)
Q Consensus 251 ~~Al~~l~g 259 (306)
.-+...+++
T Consensus 248 ~~~~~~~~~ 256 (311)
T KOG4205|consen 248 FGYGNKLNR 256 (311)
T ss_pred cccccccCC
Confidence 766665555
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.71 E-value=1.7e-07 Score=88.45 Aligned_cols=170 Identities=17% Similarity=0.077 Sum_probs=126.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCC-cceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~-~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.+.+-+.+++++..+.|++++|...- |....|..+.-+. -.|-++|+|....++++|+. -|...+-+|.+.+..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 456677889999999999999997432 3334444444333 37899999999999999998 47788888888887654
Q ss_pred ccCCCCCCC------------------------------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeE-EE
Q 021890 178 IKKKNPFPP------------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS-AE 226 (306)
Q Consensus 178 ~~~~~~~~~------------------------------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~-v~ 226 (306)
......... .........+|||..||..+++.++..+|... -.|++ |.
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~-~~Ved~I~ 466 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA-AAVEDFIE 466 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh-hhhhheeE
Confidence 332111000 01112235789999999999999999999975 57777 66
Q ss_pred EEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 227 VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 227 i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
|.+.+. ++-++.|||+|.+++++.+|+.--+.+.++.|.|+|.-.
T Consensus 467 lt~~P~-~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LTRLPT-DLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eccCCc-ccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 665554 778999999999999999988766677788899999764
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.71 E-value=3.9e-08 Score=90.67 Aligned_cols=81 Identities=27% Similarity=0.405 Sum_probs=75.0
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||.+|...+...+|+.+|.+| |.|+-.+|+.+..+.--++|+||.+.+.++|.++|+.|+...+.|+.|.|..++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKy-GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKY-GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHh-cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4789999999999999999999998 999999999987666679999999999999999999999999999999999876
Q ss_pred ch
Q 021890 274 QF 275 (306)
Q Consensus 274 ~~ 275 (306)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 54
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.68 E-value=6.3e-08 Score=91.20 Aligned_cols=78 Identities=21% Similarity=0.155 Sum_probs=66.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~-~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..+|||..||..+++.++.++|...-.|++ |.|.+..+++.++-|||.|..++++..|..--+...++.+.|+|+-..
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 468999999999999999999998888887 666677789999999999999988888887666677788888887543
No 134
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.68 E-value=3e-08 Score=84.46 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=78.3
Q ss_pred ccccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC-CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 94 REEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 94 ~~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
.....+.+.+||||+.+.++.+++...|+.||.|..+.+..++. |.++|||||+|.+.+.+..|+. |+|..|.|+.+.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 34567788999999999999999999999999999999999885 7899999999999999999999 999999999999
Q ss_pred Eeeeccc
Q 021890 173 VNYAKIK 179 (306)
Q Consensus 173 v~~~~~~ 179 (306)
|.+....
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9987765
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.67 E-value=7.8e-08 Score=81.84 Aligned_cols=82 Identities=24% Similarity=0.396 Sum_probs=73.4
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
...|+|.||++.++++||+++|..| |.++.+-+..++. |.+.|.|-|.|...+||.+|++.++|..++|+.+.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~-~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF-GELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh-ccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3679999999999999999999998 7899888887764 8999999999999999999999999999999999988865
Q ss_pred chhh
Q 021890 274 QFAR 277 (306)
Q Consensus 274 ~~~~ 277 (306)
....
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 5443
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.60 E-value=4.5e-08 Score=81.95 Aligned_cols=81 Identities=11% Similarity=0.269 Sum_probs=73.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..+..+||.|.|...++++.|-..|++|-....-++++++ +|+++||+||.|.+..++.+|+++|+|..++.+.|+++-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3456789999999999999999999999988888888887 799999999999999999999999999999999998875
Q ss_pred ec
Q 021890 176 AK 177 (306)
Q Consensus 176 ~~ 177 (306)
..
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 44
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.57 E-value=7.7e-08 Score=82.00 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=76.1
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+...+||+|+.+.++.+++...|+. ||.|..+.+..|...|.++||+||+|.+.+.+..|+. |+|..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 34678999999999999999999998 6999999999999988999999999999999999998 999999999999999
Q ss_pred Ccch
Q 021890 272 SRQF 275 (306)
Q Consensus 272 a~~~ 275 (306)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7665
No 138
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.53 E-value=3.4e-08 Score=87.23 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=120.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC----CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~----~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
..|.|.||.+.++.++++.||...|.|.++.++.... ......|||.|.+...+..|.. |.++.+-|+.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4799999999999999999999999999999987432 3457799999999999999998 6777777777666644
Q ss_pred cccCCC------------CC----CC---------C------------CCC----------CCccceeeecCCChhhhHH
Q 021890 177 KIKKKN------------PF----PP---------V------------QPK----------PFATFNLFIANLSFEARAK 209 (306)
Q Consensus 177 ~~~~~~------------~~----~~---------~------------~~~----------~~~~~~l~V~nL~~~~t~~ 209 (306)
-..... .. ++ . .+. ..-..+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 321100 00 00 0 000 0012579999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 210 ~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
++.++|+.+ |.|.+..+.- |....+|.|+|........|+. ++|..+.-...+
T Consensus 167 e~~e~f~r~-Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr 219 (479)
T KOG4676|consen 167 ESGESFERK-GEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSR 219 (479)
T ss_pred hhhhhhhhc-chhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhh
Confidence 999999997 9998887754 3345678899999999899998 588887743333
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=89.05 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC----CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~----~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
..+.|||+||++.++++.|...|..||+|..++|+..++ ...+.+|||.|-+..+|++|++.|+|..+.++.+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 356799999999999999999999999999999875442 3557799999999999999999999999999999999
Q ss_pred eecc
Q 021890 175 YAKI 178 (306)
Q Consensus 175 ~~~~ 178 (306)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9953
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.50 E-value=6.4e-07 Score=62.52 Aligned_cols=69 Identities=26% Similarity=0.360 Sum_probs=48.6
Q ss_pred ceeeecCCChhhhHH----HHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 195 FNLFIANLSFEARAK----DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~----~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..|+|.|||.+.... -|+++++..+|.|..| ..+.|+|.|.+.+.|.+|.+.|+|..+-|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 359999999876654 5778888877888766 13579999999999999999999999999999999
Q ss_pred eCc
Q 021890 271 PSR 273 (306)
Q Consensus 271 ~a~ 273 (306)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 973
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.48 E-value=2.9e-07 Score=84.56 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=69.3
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
..|||.|||.+++.++|+++|..| |.|+...|....-.++..+||||+|.+..++..||.+ +-..++|+.|.|.-.+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~F-G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQF-GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhc-ccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 459999999999999999999998 9999998876543344449999999999999999997 57788999999998776
Q ss_pred hhh
Q 021890 275 FAR 277 (306)
Q Consensus 275 ~~~ 277 (306)
..+
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 443
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.48 E-value=1.8e-06 Score=63.20 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=65.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhc--CCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccc----CeEEEE
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQH--GTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE----GRTLKV 173 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~--G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~----g~~l~v 173 (306)
++|.|.|||...|.++|.+++... |...-+-+..|. ++.+.|||||-|.+.+.|.+..+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999999763 445555566665 5788999999999999999999999999885 466777
Q ss_pred eeeccc
Q 021890 174 NYAKIK 179 (306)
Q Consensus 174 ~~~~~~ 179 (306)
.||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777654
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.44 E-value=4.6e-07 Score=85.77 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=74.3
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecC---CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD---NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~---~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 267 (306)
++.+.+|||+||++.++++.|...|..| |.|..++|+.-. +..+.+.+|||.|-+..||.+|++.|+|.++.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf-gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF-GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc-CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 3446789999999999999999999998 999999998542 234567899999999999999999999999999999
Q ss_pred EEeeCcchh
Q 021890 268 RVAPSRQFA 276 (306)
Q Consensus 268 ~v~~a~~~~ 276 (306)
++.|++...
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999996544
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=1.6e-07 Score=76.96 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=68.9
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
.++|||.|+...++|+.|.++|-+. |.|..|.|..+.. +..+ ||||.|.++....-|++.|||-.+.|+.+.|.+-
T Consensus 9 drtl~v~n~~~~v~eelL~Elfiqa-GPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQA-GPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhcc-CceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 6899999999999999999999984 9999998877654 5556 9999999999999999999999999999998873
No 145
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=2.8e-07 Score=76.79 Aligned_cols=73 Identities=30% Similarity=0.572 Sum_probs=66.3
Q ss_pred eeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcch
Q 021890 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF 275 (306)
Q Consensus 196 ~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~ 275 (306)
.+||++||+.+.+.+|..||..+ |.+..+.+. .||+||+|.+..+|..|+..|+|.+|.|..+.|.|++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~y-g~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGY-GKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhc-cccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 58999999999999999999997 899888664 478999999999999999999999999988999999875
Q ss_pred hh
Q 021890 276 AR 277 (306)
Q Consensus 276 ~~ 277 (306)
..
T Consensus 74 ~~ 75 (216)
T KOG0106|consen 74 RR 75 (216)
T ss_pred cc
Confidence 43
No 146
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.39 E-value=1.2e-06 Score=76.49 Aligned_cols=83 Identities=12% Similarity=0.259 Sum_probs=71.1
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCee--------EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVV--------SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~--------~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 264 (306)
.+..|||+|||.++|-+++.++|.++ |.|. .|++.++.. |..+|-|++.|--.+++..|++.|++..|.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKc-GiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKC-GIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhc-ceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 35679999999999999999999985 7553 256666655 8899999999999999999999999999999
Q ss_pred eeEEEeeCcchhh
Q 021890 265 RPLRVAPSRQFAR 277 (306)
Q Consensus 265 ~~l~v~~a~~~~~ 277 (306)
+.|+|..|+=..+
T Consensus 211 ~~~rVerAkfq~K 223 (382)
T KOG1548|consen 211 KKLRVERAKFQMK 223 (382)
T ss_pred cEEEEehhhhhhc
Confidence 9999998765443
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=2.4e-07 Score=85.64 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=64.2
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
+.+..+|+|-|||..+++++|..+|+.| |+|..|+.- -..+|.+||+|-+..+|++|+++|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~y-Geir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAY-GEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhh-cchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4456899999999999999999999997 999986443 34589999999999999999999999999999888
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=9.2e-08 Score=92.18 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=127.4
Q ss_pred cCCCCeEEEcCCCCCCCHH-HHHHHhhhcCCeEEEEEeecCCCCc-ceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 97 EYSKTRLVAQNVPWTSTHE-DIRALFEQHGTVLDIELSMHSKNRN-RGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~-~L~~~f~~~G~i~~~~~~~~~~~~~-~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
....+...+.|+.+..... ..+..|+.+|.|+.+++.......+ ..++++.+....+++.|.. ..+..+.++.+.|.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCC
Confidence 3445667788887777666 5688999999999998876333333 3389999999999999988 68888999999998
Q ss_pred eecccCCCCCCCCCCC-CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 021890 175 YAKIKKKNPFPPVQPK-PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (306)
Q Consensus 175 ~~~~~~~~~~~~~~~~-~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~A 253 (306)
.+.+..........+. .....++||+||+..+.+.+|...|..+ |.+..+.+....+.+..+|+|+|+|...+++.+|
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~-~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPS-GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCcc-chhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 8887664432222211 1224679999999999999999999986 7888877775566788999999999999999999
Q ss_pred HHHhCCceeC
Q 021890 254 ISAFQGKLFM 263 (306)
Q Consensus 254 l~~l~g~~i~ 263 (306)
+....++.++
T Consensus 726 V~f~d~~~~g 735 (881)
T KOG0128|consen 726 VAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhh
Confidence 9876655444
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.06 E-value=2.6e-05 Score=54.61 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=48.3
Q ss_pred CeEEEcCCCCCCCHHHHH----HHhhhcCC-eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 101 TRLVAQNVPWTSTHEDIR----ALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~----~~f~~~G~-i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..|+|.|||.+.+...++ .++..||- |.+| . .+.|+|.|.+.+.|.+|.+.|+|-.+.|++|.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 459999999999877654 55557765 5554 2 68999999999999999999999999999999999
Q ss_pred eccc
Q 021890 176 AKIK 179 (306)
Q Consensus 176 ~~~~ 179 (306)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8543
No 150
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.98 E-value=5.5e-06 Score=72.53 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=67.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCC--eEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT--VLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~--i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
+-...++|||||-|++|++||.+.+...|. +.++++..++ +|.++|||+|...+..+.++.++.|-...|+|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 334568999999999999999999988775 7788888888 5999999999999999999999999999999875444
Q ss_pred e
Q 021890 174 N 174 (306)
Q Consensus 174 ~ 174 (306)
.
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 3
No 151
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=2.3e-05 Score=66.03 Aligned_cols=103 Identities=26% Similarity=0.277 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCcccCeEEEEeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecC
Q 021890 152 DEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231 (306)
Q Consensus 152 ~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~ 231 (306)
.-|..|...|++....|+.++|.|+.. ..|+|.||...++.+.+.+-|..| |.|....++.|.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~----------------a~l~V~nl~~~~sndll~~~f~~f-g~~e~av~~vD~ 67 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH----------------AELYVVNLMQGASNDLLEQAFRRF-GPIERAVAKVDD 67 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc----------------ceEEEEecchhhhhHHHHHhhhhc-Cccchheeeecc
Confidence 457778888999999999999999974 459999999999999999999998 999998777775
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCCeeEEEeeC
Q 021890 232 NPRRSAGYGFVSFKSKKVAETAISAFQGK----LFMGRPLRVAPS 272 (306)
Q Consensus 232 ~tg~~~g~afV~f~~~~~a~~Al~~l~g~----~i~g~~l~v~~a 272 (306)
. +++.+-++|+|...-.|.+|+..+.-. ...++++-|...
T Consensus 68 r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 68 R-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred c-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 4 788899999999999999999988422 344676666554
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.92 E-value=1.3e-05 Score=59.86 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=44.4
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc-----eeCCeeEEE
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK-----LFMGRPLRV 269 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~-----~i~g~~l~v 269 (306)
..|+|.+++..++.++|++.|..| |.|.+|.+.+.. ..|+|.|.+.++|.+|+.++.-. .|.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~-g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF-GEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS---EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc-CCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 468899999999999999999997 899999887643 36999999999999999876533 566666665
Q ss_pred ee
Q 021890 270 AP 271 (306)
Q Consensus 270 ~~ 271 (306)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.91 E-value=9.9e-06 Score=71.46 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=74.7
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCee--------EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVV--------SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~--------~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 265 (306)
..+|||.+|+..+++.+|.++|.+ ||.|. .|.|.++.+|++++|-|.|.|.+...|..|+.-+++..|.|.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred cccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 568999999999999999999998 47763 356778889999999999999999999999999999999999
Q ss_pred eEEEeeCcchhh
Q 021890 266 PLRVAPSRQFAR 277 (306)
Q Consensus 266 ~l~v~~a~~~~~ 277 (306)
.|+|.+|..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999999877664
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.80 E-value=5.8e-05 Score=65.97 Aligned_cols=82 Identities=21% Similarity=0.403 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHH----H--HHHhhhcCCeEEEEEeecC-C-CCcceEE--EEEeCCHHHHHHHHHHhcCCccc
Q 021890 98 YSKTRLVAQNVPWTSTHED----I--RALFEQHGTVLDIELSMHS-K-NRNRGLA--FVTMGSPDEATAALNNLESYEFE 167 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~----L--~~~f~~~G~i~~~~~~~~~-~-~~~~g~a--fV~f~~~~~a~~ai~~l~~~~~~ 167 (306)
....-+||-+|++.+..++ | .++|.+||.|..|.+.+.- . +...+.+ ||+|.+.++|.+||...+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999999987776 2 4689999999998775543 1 2223333 99999999999999999999999
Q ss_pred CeEEEEeeeccc
Q 021890 168 GRTLKVNYAKIK 179 (306)
Q Consensus 168 g~~l~v~~~~~~ 179 (306)
||.|+..|...+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999987654
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.79 E-value=5.4e-05 Score=56.57 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=39.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY 164 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~ 164 (306)
..|+|.+++..++.++|++.|+.||.|..|.+.+. ...|||.|.+.+.|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999999999999999999998888654 558999999999999999977543
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.75 E-value=2.8e-05 Score=68.69 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=73.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEE--------EEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccc
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--------IELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~--------~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 167 (306)
....-+|||-+||..+++++|.++|.+||.|.. |.|.+++ ++.+++-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 344567999999999999999999999998753 4455565 6899999999999999999999999999999
Q ss_pred CeEEEEeeecccC
Q 021890 168 GRTLKVNYAKIKK 180 (306)
Q Consensus 168 g~~l~v~~~~~~~ 180 (306)
|..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998887654
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00022 Score=66.43 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=66.0
Q ss_pred cceeeecCCCh------hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-Cee
Q 021890 194 TFNLFIANLSF------EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM-GRP 266 (306)
Q Consensus 194 ~~~l~V~nL~~------~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~ 266 (306)
...|+|.|+|- ..-...|..+|+++ |.|....++.+..+| ++||.|++|.+..+|..|++.|||+.|+ ++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~-gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKA-GKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhh-ccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 46788888874 22334678899997 999999998888755 8999999999999999999999999886 677
Q ss_pred EEEeeCcchhh
Q 021890 267 LRVAPSRQFAR 277 (306)
Q Consensus 267 l~v~~a~~~~~ 277 (306)
..|..=+.-.+
T Consensus 136 f~v~~f~d~ek 146 (698)
T KOG2314|consen 136 FFVRLFKDFEK 146 (698)
T ss_pred EEeehhhhHHH
Confidence 77765444333
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.59 E-value=4.2e-05 Score=67.52 Aligned_cols=81 Identities=20% Similarity=0.432 Sum_probs=72.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
+..+|+||+..+++++|+..|..+|.|..+++..+. ++.++|||||.|.....+..++.. ....+.|+.+.+.+..+.
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 334499999999999999999999999999998777 699999999999999999999986 788899999999988776
Q ss_pred CCC
Q 021890 180 KKN 182 (306)
Q Consensus 180 ~~~ 182 (306)
...
T Consensus 265 ~~~ 267 (285)
T KOG4210|consen 265 PKS 267 (285)
T ss_pred ccc
Confidence 544
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.56 E-value=0.00035 Score=63.13 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEec---CCC--CCC--------ccEEEEEeCCHHHHHHH
Q 021890 187 VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH---DNP--RRS--------AGYGFVSFKSKKVAETA 253 (306)
Q Consensus 187 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~---~~t--g~~--------~g~afV~f~~~~~a~~A 253 (306)
......+.++|.+.|||.+-.-+-|.++|..+ |.|+.|+|+.- +.. |.+ +-+|+|+|...+.|.+|
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~-G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTV-GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcc-cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 44455678999999999999999999999996 99999999865 322 222 45699999999999999
Q ss_pred HHHhCCc
Q 021890 254 ISAFQGK 260 (306)
Q Consensus 254 l~~l~g~ 260 (306)
.+.|+..
T Consensus 303 ~e~~~~e 309 (484)
T KOG1855|consen 303 RELLNPE 309 (484)
T ss_pred HHhhchh
Confidence 9988543
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.52 E-value=0.00025 Score=45.93 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=42.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHH
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAAL 158 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai 158 (306)
+.|-|.+.+.+..+ ++...|..||.|.++.+.. ...+.||.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 46888899877764 4555888999999988752 2679999999999999985
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.47 E-value=6.9e-05 Score=63.23 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=61.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-C--------CCc----ceEEEEEeCCHHHHHHHHHHhcCCc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-K--------NRN----RGLAFVTMGSPDEATAALNNLESYE 165 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~--------~~~----~g~afV~f~~~~~a~~ai~~l~~~~ 165 (306)
....||+++||+.+...-|+++|+.||.|-+|.+.+.. . |.+ -.-|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 55789999999999999999999999999999886532 1 222 2248899999999999999999999
Q ss_pred ccCeE
Q 021890 166 FEGRT 170 (306)
Q Consensus 166 ~~g~~ 170 (306)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99974
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.47 E-value=6.9e-05 Score=63.25 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=61.0
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCC--------CCCc----cEEEEEeCCHHHHHHHHHHhCCce
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP--------RRSA----GYGFVSFKSKKVAETAISAFQGKL 261 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~t--------g~~~----g~afV~f~~~~~a~~Al~~l~g~~ 261 (306)
...||+++||+.+...-|+++|..| |.|-.|.+.....+ |..+ .-|+|+|.+...|..+...|||..
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y-GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY-GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc-cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5679999999999999999999997 99999988765443 2222 238999999999999999999999
Q ss_pred eCCee
Q 021890 262 FMGRP 266 (306)
Q Consensus 262 i~g~~ 266 (306)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99854
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00034 Score=65.24 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=64.7
Q ss_pred cCCCCeEEEcCCCCCC--CH----HHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc-cCe
Q 021890 97 EYSKTRLVAQNVPWTS--TH----EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-EGR 169 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~--t~----~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~-~g~ 169 (306)
+.-...|+|.|+|--- .. .-|.++|+++|+|+...+..+..|..+||.|++|.+..+|+.|++.|||..| .+.
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3445779999998532 22 2356789999999999988888888999999999999999999999999988 455
Q ss_pred EEEEeeec
Q 021890 170 TLKVNYAK 177 (306)
Q Consensus 170 ~l~v~~~~ 177 (306)
...|...+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 66666544
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.39 E-value=0.00063 Score=50.14 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=53.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEE-Eeec-------CCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCe-
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMH-------SKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR- 169 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~-~~~~-------~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~- 169 (306)
..+.|.|-+.|.. ....+.+.|+.||.|.+.. +.++ +......+-.|.|.++.+|.+||. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456889999988 5678889999999998764 1111 111236699999999999999999 599999885
Q ss_pred EEEEeeecc
Q 021890 170 TLKVNYAKI 178 (306)
Q Consensus 170 ~l~v~~~~~ 178 (306)
.+-|.++++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 455777643
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.37 E-value=0.00017 Score=65.12 Aligned_cols=70 Identities=23% Similarity=0.352 Sum_probs=58.6
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeec---C---CCC--------cceEEEEEeCCHHHHHHHHHH
Q 021890 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH---S---KNR--------NRGLAFVTMGSPDEATAALNN 160 (306)
Q Consensus 95 ~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~---~---~~~--------~~g~afV~f~~~~~a~~ai~~ 160 (306)
.++...++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.- . .+. .+-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34567899999999999999999999999999999999764 2 122 256899999999999999997
Q ss_pred hcCC
Q 021890 161 LESY 164 (306)
Q Consensus 161 l~~~ 164 (306)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7543
No 166
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00073 Score=62.57 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-hcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHH
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNN 160 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~-~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~ 160 (306)
..++||||+||.-++.++|..+|. .||.|..+-|=.|. -+.++|-|-|+|.+-.+-.+||..
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 468999999999999999999999 79999999888885 588999999999999999999984
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.31 E-value=0.00082 Score=57.89 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCCeeEEEEEecCCCCCCc-cEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSA-GYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 207 t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~-g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
-++++++.+++| |.|..|.|..++.-.... ---||+|...+.|.+|+-.|||+.|+||.++.-|-.
T Consensus 299 lede~keEceKy-g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 299 LEDETKEECEKY-GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHHhh-cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 356788899996 999999888775322222 237999999999999999999999999999988854
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.28 E-value=0.0016 Score=48.00 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=53.3
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecC-------CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD-------NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR- 265 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~-------~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~- 265 (306)
...|.|-+.|...+ ..|.+.|++| |.|.+..-.... .......+..|.|.+..+|.+||. -||..|.|.
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~-G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSF-GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCC-S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhc-ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45688999998855 4577888886 888776411000 001235689999999999999998 499999984
Q ss_pred eEEEeeCcchhh
Q 021890 266 PLRVAPSRQFAR 277 (306)
Q Consensus 266 ~l~v~~a~~~~~ 277 (306)
.+-|.|+++..+
T Consensus 83 mvGV~~~~~~~~ 94 (100)
T PF05172_consen 83 MVGVKPCDPADE 94 (100)
T ss_dssp EEEEEE-HHHHC
T ss_pred EEEEEEcHHhHH
Confidence 566888765543
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.24 E-value=0.00072 Score=59.31 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=62.1
Q ss_pred ceeeecCCChhhhHHH----H--HHHHHhcCCCeeEEEEEecCCCC-CCcc--EEEEEeCCHHHHHHHHHHhCCceeCCe
Q 021890 195 FNLFIANLSFEARAKD----L--REFFISEGWDVVSAEVIFHDNPR-RSAG--YGFVSFKSKKVAETAISAFQGKLFMGR 265 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~----l--~~~F~~~~G~v~~v~i~~~~~tg-~~~g--~afV~f~~~~~a~~Al~~l~g~~i~g~ 265 (306)
.-+||-+|++.+..++ | .++|.+| |.|..|.|-+...+. .-.+ -.||.|.+.+||.+||...+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQy-GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQY-GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhc-cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 4589999988776665 2 5899997 999988775543111 1122 249999999999999999999999999
Q ss_pred eEEEeeCcch
Q 021890 266 PLRVAPSRQF 275 (306)
Q Consensus 266 ~l~v~~a~~~ 275 (306)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997654
No 170
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.24 E-value=0.00031 Score=61.78 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=66.3
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G--~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
..++||+||-|++|++||.+.+... | .+.++++..+..+|.++|||+|-..+.....+.++.|--+.|.|..-.|.-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 4689999999999999998888764 5 566777788888899999999999999999999999999999986555544
Q ss_pred C
Q 021890 272 S 272 (306)
Q Consensus 272 a 272 (306)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.21 E-value=0.0014 Score=51.36 Aligned_cols=57 Identities=28% Similarity=0.425 Sum_probs=46.7
Q ss_pred HHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 115 ~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
.+|.+.|..||.+.=+++. .+.-+|+|.+.+.|.+|+. ++|..+.|+.|+|....+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv-------~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFV-------GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEE-------TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEe-------CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 3677888999998888877 4578999999999999999 8999999999999987654
No 172
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.07 E-value=0.00039 Score=65.19 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-hcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc---cCeEEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF---EGRTLKV 173 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~-~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~---~g~~l~v 173 (306)
..++.|||.||-.-.|.-+|+.++. .+|.|++. ++ | +-+..|||.|.+.++|...+..|||..| +++.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 4467899999999999999999999 56667665 22 2 2377999999999999999999999998 7789999
Q ss_pred eeeccc
Q 021890 174 NYAKIK 179 (306)
Q Consensus 174 ~~~~~~ 179 (306)
.|....
T Consensus 517 df~~~d 522 (718)
T KOG2416|consen 517 DFVRAD 522 (718)
T ss_pred eecchh
Confidence 998643
No 173
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.04 E-value=0.0027 Score=41.11 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=40.8
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al 254 (306)
+.|-|.+.+....+..|. .|..| |+|..+.+.. ...+.+|.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~f-GeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASF-GEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhc-CCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 458889998877766554 77776 9999887752 2458999999999999985
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.03 E-value=0.00035 Score=59.17 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=50.3
Q ss_pred HHHHHHHH-hcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 209 KDLREFFI-SEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 209 ~~l~~~F~-~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
++|...|+ +| |+|+.+.|..+-. -.-.|-++|.|...++|.+|+..|||.+|.|++|...++-
T Consensus 83 Ed~f~E~~~ky-gEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKY-GEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHh-hhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 65 9999987765422 2247889999999999999999999999999999998864
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.00 E-value=0.00061 Score=63.96 Aligned_cols=82 Identities=18% Similarity=0.106 Sum_probs=67.7
Q ss_pred CCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCe
Q 021890 189 PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF---MGR 265 (306)
Q Consensus 189 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i---~g~ 265 (306)
.....+..|+|.||-.-+|.-+|++++.+-+|.|+..+| |. -+..|||.|.+.++|.....+|||..+ +++
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 344557889999999999999999999987788887733 22 256799999999999999999999866 469
Q ss_pred eEEEeeCcchh
Q 021890 266 PLRVAPSRQFA 276 (306)
Q Consensus 266 ~l~v~~a~~~~ 276 (306)
.|.+.|...-.
T Consensus 513 ~L~adf~~~de 523 (718)
T KOG2416|consen 513 HLIADFVRADE 523 (718)
T ss_pred eeEeeecchhH
Confidence 99999976543
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.92 E-value=0.00044 Score=58.59 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=53.6
Q ss_pred HHHHHHhh-hcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 115 EDIRALFE-QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 115 ~~L~~~f~-~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
++|...|+ +||.|+++.+..+..-.-.|-+||.|..+++|++|+..||+..+.|++|...+....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 34444445 899999987765545566889999999999999999999999999999999987643
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.88 E-value=0.0068 Score=47.49 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=51.0
Q ss_pred CCCccceeeecCCC------hhhhH---HHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc
Q 021890 190 KPFATFNLFIANLS------FEARA---KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (306)
Q Consensus 190 ~~~~~~~l~V~nL~------~~~t~---~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~ 260 (306)
.+++..++.|.=+. ....+ .+|.+.|..| |.+.-++++. +.-+|.|.+-++|.+|+. |+|.
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~-GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~ 92 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY-GEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGI 92 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC-S-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCS
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC-CceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCc
Confidence 34456676666554 22222 3567777776 8988777763 348999999999999997 7999
Q ss_pred eeCCeeEEEeeCcc
Q 021890 261 LFMGRPLRVAPSRQ 274 (306)
Q Consensus 261 ~i~g~~l~v~~a~~ 274 (306)
.++|+.|+|....+
T Consensus 93 ~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 93 QVNGRTLKIRLKTP 106 (146)
T ss_dssp EETTEEEEEEE---
T ss_pred EECCEEEEEEeCCc
Confidence 99999999998543
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.86 E-value=0.0037 Score=53.99 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=53.7
Q ss_pred HHHHHHHhhhcCCeEEEEEeecCC--CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 114 HEDIRALFEQHGTVLDIELSMHSK--NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 114 ~~~L~~~f~~~G~i~~~~~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
++++.+..++||.|..|.|..... -.-.---||+|...++|.+|+-.|||..|+||.+...|-+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 466778889999999998877653 22234689999999999999999999999999999887653
No 179
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.82 E-value=0.002 Score=63.32 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=69.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccC--eEEEE
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG--RTLKV 173 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g--~~l~v 173 (306)
.....+.+++|+|..|+....|...|..||.|..|.+-. ...||||.|++...++.|++.|-|..|+| +.++|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 344567899999999999999999999999999876643 26799999999999999999999999976 67999
Q ss_pred eeecccC
Q 021890 174 NYAKIKK 180 (306)
Q Consensus 174 ~~~~~~~ 180 (306)
.++....
T Consensus 526 dla~~~~ 532 (975)
T KOG0112|consen 526 DLASPPG 532 (975)
T ss_pred ccccCCC
Confidence 9987654
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.47 E-value=0.017 Score=38.45 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=44.4
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcC--CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 195 FNLFIANLSFEARAKDLREFFISEG--WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~--G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
..|+|.|++. ++-++|+.+|..|+ .....|+++-|.. |-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 4699999965 67778999999873 2577888887643 889999999999999865
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.31 E-value=0.034 Score=51.03 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccC
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~-i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 168 (306)
.+.|+|-.+|..++-.||..|...+-. |.+++++++..+ ++-..+|.|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 678999999999999999999987654 889999985322 24468999999999999999999988854
No 182
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.27 E-value=0.0048 Score=55.86 Aligned_cols=78 Identities=27% Similarity=0.351 Sum_probs=61.6
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc-eeCCeeEEEeeCc
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK-LFMGRPLRVAPSR 273 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~-~i~g~~l~v~~a~ 273 (306)
..||++||.+.++..+|..+|.... .-.+-.++. -.||+||.+.+..-|.+|++.++|. .+.|+++.|.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-IPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-CCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3589999999999999999998531 111111221 2589999999999999999999997 6889999999988
Q ss_pred chhhhh
Q 021890 274 QFARLQ 279 (306)
Q Consensus 274 ~~~~~~ 279 (306)
++..+-
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 876543
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.22 E-value=0.057 Score=40.56 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=54.0
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 264 (306)
..+.+...|+.++.++|..+...+...|..++|++|.. .++-.++++|.+.++|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44555556667777788888777767888899998743 256678999999999999999999998874
No 184
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.17 E-value=0.0067 Score=51.52 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=57.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 162 (306)
..|||.||...+..+.|..-|+.||+|..-.++.|..++..+-++|.|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 56999999999999999999999999998888888889999999999999999999998774
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.94 E-value=0.09 Score=39.51 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccC
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~-i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 168 (306)
...+.+...|+.++.++|..+.+.+-. |..++|+++... ++-.+++.|.+.++|....+.+||..+.-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344556666677777778766666544 778888876542 46689999999999999999999987743
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.79 E-value=0.057 Score=38.03 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 162 (306)
....+|+ +|..+...||.++|+.||.|. |.++. ..-|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEEC------TTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc------CCcEEEEeecHHHHHHHHHHhc
Confidence 3556676 999999999999999999985 66654 4589999999999999998765
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.78 E-value=0.45 Score=41.54 Aligned_cols=178 Identities=14% Similarity=0.158 Sum_probs=110.3
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC--------CCCcceEEEEEeCCHHHHHH----HHHHhcC
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--------KNRNRGLAFVTMGSPDEATA----ALNNLES 163 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~--------~~~~~g~afV~f~~~~~a~~----ai~~l~~ 163 (306)
+....|.|...|+...++-..+..-|-+||+|++|.++.+. .........+.|-+.+.+-. .++.|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 45556789999999999999999999999999999998765 22345678899988887533 2222322
Q ss_pred --CcccCeEEEEeeecccCCCCCC------CC-----------CCCCCccceeeecCCChhhhHHHHHHHH---HhcCC-
Q 021890 164 --YEFEGRTLKVNYAKIKKKNPFP------PV-----------QPKPFATFNLFIANLSFEARAKDLREFF---ISEGW- 220 (306)
Q Consensus 164 --~~~~g~~l~v~~~~~~~~~~~~------~~-----------~~~~~~~~~l~V~nL~~~~t~~~l~~~F---~~~~G- 220 (306)
..++-..|.+.|..-+-..... .. -.....++.|.|.=-..-..++.+.+-+ .. -+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~-~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKN-SNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhcc-CCC
Confidence 3356677888776632111100 00 0112235667665332222333333222 21 12
Q ss_pred ---CeeEEEEEecCC--CCCCccEEEEEeCCHHHHHHHHHHhC--CceeC-CeeEEEeeCcc
Q 021890 221 ---DVVSAEVIFHDN--PRRSAGYGFVSFKSKKVAETAISAFQ--GKLFM-GRPLRVAPSRQ 274 (306)
Q Consensus 221 ---~v~~v~i~~~~~--tg~~~g~afV~f~~~~~a~~Al~~l~--g~~i~-g~~l~v~~a~~ 274 (306)
.+++|.++.-.. ..-+..||.+.|-+...|...++.|. +...+ .+...|+.+..
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~ 231 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPH 231 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCc
Confidence 467777775432 22367899999999999999988776 33333 56667776543
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.77 E-value=0.077 Score=35.33 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhc----CCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHh
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQH----GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~----G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 161 (306)
..+|+|.|+. ..+.++|+.+|..| + ...|.++-| .-|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdD------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDD------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecC------CcEEEEECCHHHHHHHHHcC
Confidence 3569999984 57889999999999 4 446777754 36889999999999999754
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.68 E-value=0.032 Score=45.97 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=48.3
Q ss_pred CHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc--CCcccCeEEEEeeecccC
Q 021890 113 THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKVNYAKIKK 180 (306)
Q Consensus 113 t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~~g~~l~v~~~~~~~ 180 (306)
..+.|+++|..++.+..+..++. .+-..|.|.+.++|.+|...|+ +..+.|..+++.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45889999999999998888754 7789999999999999999999 999999999999986543
No 190
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.52 E-value=0.018 Score=51.81 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=61.4
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP---RRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~t---g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
..|.|.||.+.++.++++.+|.- .|.|..+.++..... ......|||.|.+...+..|- +|.++.|-|+.|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 37999999999999999999996 599999988763221 124568999999998877776 5888988888888765
Q ss_pred C
Q 021890 272 S 272 (306)
Q Consensus 272 a 272 (306)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 4
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.49 E-value=0.14 Score=39.80 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=57.2
Q ss_pred CCccceeeecCCChhh----hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 021890 191 PFATFNLFIANLSFEA----RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~----t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 266 (306)
+++..+|.|+=|..++ +...+...+..| |.|.+|... .+.-|.|.|.+..+|=+|+.+++. ...|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~f-GpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF-GPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhc-CCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3456788886655544 334455666777 999999765 245699999999999999998766 677889
Q ss_pred EEEeeCcchh
Q 021890 267 LRVAPSRQFA 276 (306)
Q Consensus 267 l~v~~a~~~~ 276 (306)
+.++|.....
T Consensus 154 ~qCsWqqrFM 163 (166)
T PF15023_consen 154 FQCSWQQRFM 163 (166)
T ss_pred EEeecccccc
Confidence 9999976543
No 192
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.45 E-value=0.022 Score=54.54 Aligned_cols=108 Identities=11% Similarity=0.051 Sum_probs=77.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccC
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~ 180 (306)
.+|||||+...+..+-++.+...||.|.++... .|||..|.....+.+|+..++...++|..+.+.......
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~ 112 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTI 112 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------hhcccchhhHHHHHHHHHHhcccCCCcchhhccchhhhh
Confidence 569999999999999999999999999887654 299999999999999999999999999988877642211
Q ss_pred CCCCC-------CCCCCCCc--cceeeecCCChhhhHHHHHHHHH
Q 021890 181 KNPFP-------PVQPKPFA--TFNLFIANLSFEARAKDLREFFI 216 (306)
Q Consensus 181 ~~~~~-------~~~~~~~~--~~~l~V~nL~~~~t~~~l~~~F~ 216 (306)
..... ........ .+-++|.|++....+......+.
T Consensus 113 ~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 113 ENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred cCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 11100 01111111 34577777777666655555554
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.42 E-value=0.04 Score=51.79 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHhcCCcccCeEEEEeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHh-cCCCeeEEEEE
Q 021890 150 SPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFIS-EGWDVVSAEVI 228 (306)
Q Consensus 150 ~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~~G~v~~v~i~ 228 (306)
|.+-...+++..-+..++.+..+|+.... .+.+.++-||.++-.++++.+|+. -|-.+.+|++.
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~k---------------RcIvilREIpettp~e~Vk~lf~~encPk~iscefa 210 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNHK---------------RCIVILREIPETTPIEVVKALFKGENCPKVISCEFA 210 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCcc---------------eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee
Confidence 34445556666666777766666654331 467889999999999999999982 22467788876
Q ss_pred ecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 021890 229 FHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (306)
Q Consensus 229 ~~~~tg~~~g~afV~f~~~~~a~~Al~~l~ 258 (306)
.+.. =||.|++..||+.|.+.|.
T Consensus 211 ~N~n-------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 211 HNDN-------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ecCc-------eEEEeecchhHHHHHHHHH
Confidence 6542 6899999999999987765
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.36 E-value=0.33 Score=42.50 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCe-EEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR-TLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~-~l~v~~~~~ 178 (306)
..=|-|.++|+.-. .-|..+|++||.|++.... ....|-+|.|.+..+|++||. .||..|+|. -|-|..+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 55678888888765 4566789999999876543 225699999999999999999 599999775 345665544
Q ss_pred c
Q 021890 179 K 179 (306)
Q Consensus 179 ~ 179 (306)
+
T Consensus 270 k 270 (350)
T KOG4285|consen 270 K 270 (350)
T ss_pred H
Confidence 3
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.31 E-value=0.058 Score=41.91 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCC----CHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 99 SKTRLVAQNVPWTS----THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 99 ~~~~l~V~nL~~~~----t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
...+|.|+=|..++ +-..+...++.||+|.++.+. .+..|.|.|.+..+|-+|+.++.. ...|..+.+.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 34678887655554 334455567789999998774 266899999999999999998765 6778888888
Q ss_pred eecc
Q 021890 175 YAKI 178 (306)
Q Consensus 175 ~~~~ 178 (306)
|-..
T Consensus 158 Wqqr 161 (166)
T PF15023_consen 158 WQQR 161 (166)
T ss_pred cccc
Confidence 8653
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.22 E-value=0.0073 Score=53.34 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhhcCCeEEEEEeecCC--C--CcceEEEEEeCCHHHHHHHHHHhcCCcccCeE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIR---ALFEQHGTVLDIELSMHSK--N--RNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~---~~f~~~G~i~~~~~~~~~~--~--~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 170 (306)
....-+||-+|+.....+++. +.|.+||.|..|.+..+.. . ....-+||+|...++|..||...+|..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 345668888898887555553 4788899999998877551 1 11224999999999999999999999999999
Q ss_pred EEEeeeccc
Q 021890 171 LKVNYAKIK 179 (306)
Q Consensus 171 l~v~~~~~~ 179 (306)
++..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 888877654
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.79 E-value=0.041 Score=45.15 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=49.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCe---eEEEEEecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCceeCC----
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDV---VSAEVIFHDNPRR--SAGYGFVSFKSKKVAETAISAFQGKLFMG---- 264 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v---~~v~i~~~~~tg~--~~g~afV~f~~~~~a~~Al~~l~g~~i~g---- 264 (306)
...|.|++||++++++++.+.+..+.+.- .++.-........ ...-|||.|.+.+++..-...++|+.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 46899999999999999999766622433 3333112211111 23459999999999999999999987753
Q ss_pred -eeEEEeeC
Q 021890 265 -RPLRVAPS 272 (306)
Q Consensus 265 -~~l~v~~a 272 (306)
.+-.|.+|
T Consensus 87 ~~~~~VE~A 95 (176)
T PF03467_consen 87 EYPAVVEFA 95 (176)
T ss_dssp EEEEEEEE-
T ss_pred CcceeEEEc
Confidence 45566665
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.76 E-value=0.041 Score=45.12 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhh-cCCe---EEEEEeecC--CC-CcceEEEEEeCCHHHHHHHHHHhcCCcccC--
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQ-HGTV---LDIELSMHS--KN-RNRGLAFVTMGSPDEATAALNNLESYEFEG-- 168 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~-~G~i---~~~~~~~~~--~~-~~~g~afV~f~~~~~a~~ai~~l~~~~~~g-- 168 (306)
....+|.|++||++.|++++.+.+.. ++.. ..+...... .+ ..-.-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999997776 6655 333322222 11 234579999999999999999999987733
Q ss_pred ---eEEEEeeec
Q 021890 169 ---RTLKVNYAK 177 (306)
Q Consensus 169 ---~~l~v~~~~ 177 (306)
..-.|++|-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 244555554
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.70 E-value=0.084 Score=48.53 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=60.8
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 264 (306)
+..|+|-.+|..++-.||..|...+.-.|..++|++|.. ..+-.++|.|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 577999999999999999999999888999999999642 235568999999999999999999998874
No 200
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.45 E-value=0.13 Score=36.20 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=39.9
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~ 258 (306)
...++|. .|..+...||.++|..| |.|. |.++-| .-|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspf-G~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPF-GQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCC-CCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccC-CcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3456665 99999999999999997 7764 445433 259999999999999998875
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.31 E-value=0.024 Score=52.24 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=63.7
Q ss_pred cCCCCeEEEcCCCCCC-CHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTS-THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~-t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..+.+.|-+.-.++.. +.++|...|..||.|..|.+-.. .-.|.|+|.+..+|-+|-. .++..|+||.|+|.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 4455666666666665 66899999999999999987433 4579999999999988877 699999999999999
Q ss_pred ecccC
Q 021890 176 AKIKK 180 (306)
Q Consensus 176 ~~~~~ 180 (306)
.++..
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 98854
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.30 E-value=0.071 Score=50.21 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=58.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhh--cCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcC--CcccCeEEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQ--HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES--YEFEGRTLKV 173 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~--~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~--~~~~g~~l~v 173 (306)
.+.+.|.++-||..+.+++++.||+. |-.+.+|.+..+ . -=||+|++..||+.|.+.|.. ..|.|+.|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-----~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-----D-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-----C-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 34677889999999999999999984 777888988654 2 348999999999999998764 5578887765
Q ss_pred ee
Q 021890 174 NY 175 (306)
Q Consensus 174 ~~ 175 (306)
++
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 54
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.19 E-value=0.035 Score=54.68 Aligned_cols=76 Identities=26% Similarity=0.255 Sum_probs=62.7
Q ss_pred eeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC--CeeEEEeeCcc
Q 021890 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM--GRPLRVAPSRQ 274 (306)
Q Consensus 197 l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~--g~~l~v~~a~~ 274 (306)
..+.|.+-..+-..|..+|.+| |.|.+++..++-+ .|.|+|.+.+.|..|+++|+|+.+. |-+.+|.+|+.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~y-g~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDY-GSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhh-cchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3444455677778899999997 9999999887643 6999999999999999999999754 88999999987
Q ss_pred hhhhh
Q 021890 275 FARLQ 279 (306)
Q Consensus 275 ~~~~~ 279 (306)
-.-.+
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 65444
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.07 E-value=0.046 Score=39.19 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=46.5
Q ss_pred EEEEeCCHHHHHHHHHHhcC--CcccCeEEEEeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHH
Q 021890 144 AFVTMGSPDEATAALNNLES--YEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFI 216 (306)
Q Consensus 144 afV~f~~~~~a~~ai~~l~~--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~ 216 (306)
|+|+|.+..-|++.++ +.. ..+++..+.|.-..-.......-.-......++|.|.|||..+.+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999998 333 33466666555433221111111111223367899999999999999988765
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.55 E-value=0.24 Score=40.86 Aligned_cols=61 Identities=26% Similarity=0.223 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeeEEEeeCcc
Q 021890 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ--GKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 207 t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~--g~~i~g~~l~v~~a~~ 274 (306)
..+.|+++|..+ +.+....+++ +-+-..|.|.+.++|.+|...|+ +..+.|..++|-|+..
T Consensus 8 ~~~~l~~l~~~~-~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTY-DPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT--SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhc-CCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 347899999997 7777666653 24458999999999999999999 9999999999999843
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.93 E-value=0.59 Score=32.32 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHhhhcCC-----eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 110 WTSTHEDIRALFEQHGT-----VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 110 ~~~t~~~L~~~f~~~G~-----i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
..++..+|..++...+. |-.|.+. ..|+||+-... .|..++..|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788889888887643 5677776 55899988654 788899999999999999999864
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.61 E-value=0.84 Score=30.85 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=44.2
Q ss_pred CCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 111 TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 111 ~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
.++-++++..++.|+... |..++ .| -||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999998653 33443 23 489999999999999999999888877765
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.58 E-value=0.052 Score=48.12 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=61.2
Q ss_pred ceeeecCCChhhhHHHHH---HHHHhcCCCeeEEEEEecCC--CCC-CccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 195 FNLFIANLSFEARAKDLR---EFFISEGWDVVSAEVIFHDN--PRR-SAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~---~~F~~~~G~v~~v~i~~~~~--tg~-~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
.-+||-+|+..+..+.+. +.|.+| |.|..|.+..++. .+. ...-++|.|...++|..||...+|..+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqy-gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQY-GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccccc-ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457788888776555443 677776 8999888877652 111 122389999999999999999999999999998
Q ss_pred EeeCcchh
Q 021890 269 VAPSRQFA 276 (306)
Q Consensus 269 v~~a~~~~ 276 (306)
+.+...+.
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88876654
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.40 E-value=0.13 Score=47.51 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=55.4
Q ss_pred ecCCChhh-hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchh
Q 021890 199 IANLSFEA-RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276 (306)
Q Consensus 199 V~nL~~~~-t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~ 276 (306)
+.-.+..+ +.++|...|.+| |.|..|.+-.. .-.|.|.|.+..+|.+|.. .++..|+||.|+|.|-.+..
T Consensus 377 lek~~~glnt~a~ln~hfA~f-G~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQF-GEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhhc-CccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 33334433 457899999998 99999977543 3469999999999988886 69999999999999977744
No 210
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=0.88 Score=43.37 Aligned_cols=127 Identities=18% Similarity=0.207 Sum_probs=73.7
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHHhhhc----CCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEE
Q 021890 97 EYSKTRLVAQNVPWT-STHEDIRALFEQH----GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~-~t~~~L~~~f~~~----G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 171 (306)
....++|-|-||.|+ +...+|.-+|+.| |.|.+|.|....-|+.+ |..-.+.|-.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeR-------------------M~eEeV~GP~~ 231 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKER-------------------MKEEEVHGPPK 231 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHH-------------------hhhhcccCChh
Confidence 345678999999996 6899999999876 57889988765434322 22223334333
Q ss_pred EEeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHH
Q 021890 172 KVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAE 251 (306)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~ 251 (306)
.+--........ . .+...-++..++-+..| .+...+ .-||.|+|.+...|.
T Consensus 232 el~~~~e~~~~s-----------~------sD~ee~~~~~~~kLR~Y--q~~rLk----------YYyAVvecDsi~tA~ 282 (650)
T KOG2318|consen 232 ELFKPVEEYKES-----------E------SDDEEEEDVDREKLRQY--QLNRLK----------YYYAVVECDSIETAK 282 (650)
T ss_pred hhccccccCccc-----------c------cchhhhhhHHHHHHHHH--Hhhhhe----------eEEEEEEecCchHHH
Confidence 222111100000 0 11111112223333333 122111 237999999999999
Q ss_pred HHHHHhCCceeCC--eeEEEee
Q 021890 252 TAISAFQGKLFMG--RPLRVAP 271 (306)
Q Consensus 252 ~Al~~l~g~~i~g--~~l~v~~ 271 (306)
+..+.|+|..|.. ..|-+.|
T Consensus 283 ~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 283 AVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHhcCcceeccccceeeeee
Confidence 9999999999984 4444444
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.92 E-value=0.1 Score=51.52 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc--cCeEEEEeeeccc
Q 021890 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF--EGRTLKVNYAKIK 179 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~--~g~~l~v~~~~~~ 179 (306)
+.++.|.+-..+-.-|..+|..||.|.+.+.+++ ..+|.|+|...+.|-.|+..|+|.++ -|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3455666667888999999999999999998876 67899999999999999999999875 7888999988764
Q ss_pred C
Q 021890 180 K 180 (306)
Q Consensus 180 ~ 180 (306)
.
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.45 E-value=1.2 Score=30.76 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHhcCC----CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 204 FEARAKDLREFFISEGW----DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 204 ~~~t~~~l~~~F~~~~G----~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
..++..+|..++....| .|-.|+|. ..|+||+-.. +.|..++..|++..+.|+.|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35667778888776432 34455554 3489999875 4789999999999999999999865
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.37 E-value=0.58 Score=45.24 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=60.7
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+..++||+|+-..+..+-++.+... ||.|.++.... |||..|..+.....|+..|+-..++|..+.+..-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4678999999999999999999996 69887765542 8999999999999999999999999988877654
No 214
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=88.30 E-value=1.2 Score=35.14 Aligned_cols=109 Identities=8% Similarity=0.004 Sum_probs=70.5
Q ss_pred CCCHHHHHHHhhh-cCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccCCCCCCCCCC
Q 021890 111 TSTHEDIRALFEQ-HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQP 189 (306)
Q Consensus 111 ~~t~~~L~~~f~~-~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~ 189 (306)
..+-..|...+.. .+....+.+..- ..++..+.|.+.+++.+++. .....++|..+.+....+....... .
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~---~ 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEV---K 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccc---c
Confidence 3566666666654 233323333321 26899999999999999998 4777788888888776643322110 0
Q ss_pred CCCccceeeecCCChh-hhHHHHHHHHHhcCCCeeEEEEE
Q 021890 190 KPFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVI 228 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~-~t~~~l~~~F~~~~G~v~~v~i~ 228 (306)
......-|.|.|||.. .+++-++.+.+.+ |.+..+...
T Consensus 100 ~~~~~vWVri~glP~~~~~~~~~~~i~~~i-G~~i~vD~~ 138 (153)
T PF14111_consen 100 FEHIPVWVRIYGLPLHLWSEEILKAIGSKI-GEPIEVDEN 138 (153)
T ss_pred eeccchhhhhccCCHHHhhhHHHHHHHHhc-CCeEEEEcC
Confidence 0111244888999987 5667778888875 998877554
No 215
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.65 E-value=2.4 Score=37.30 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=55.1
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-eeEEEeeC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG-RPLRVAPS 272 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-~~l~v~~a 272 (306)
..-+.|-++++.-.- -|..+|.+ ||.|.+.... ..-.+-+|.|.+.-+|++||.+ +|.+|+| -.|-|..+
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~-cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSR-CGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHh-hCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 456788888876554 46677787 4988765332 2245899999999999999985 9999997 44566666
Q ss_pred cchhhh
Q 021890 273 RQFARL 278 (306)
Q Consensus 273 ~~~~~~ 278 (306)
..+...
T Consensus 268 tDksvi 273 (350)
T KOG4285|consen 268 TDKSVI 273 (350)
T ss_pred CCHHHh
Confidence 555543
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.15 E-value=7.4 Score=26.26 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 205 ~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
.++-++++.-+..| ...+| ..|. + | -||.|.+..+|.++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y--~~~~I--~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY--RWDRI--RDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC--CcceE--EecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56677999999987 34433 3332 2 2 589999999999999999999998877654
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.85 E-value=14 Score=32.46 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=37.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCe-EEEEEeecCCCCcceEEEEEeCCHH
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTV-LDIELSMHSKNRNRGLAFVTMGSPD 152 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i-~~~~~~~~~~~~~~g~afV~f~~~~ 152 (306)
.-|+++||+.++.-.||+..+.+.|.+ .++.+. .+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCcc
Confidence 449999999999999999999987764 344443 34788999997654
No 218
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.79 E-value=12 Score=32.73 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=35.1
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 247 (306)
.-|+++||+.++.-.||+..+.+......++.+- .+.|.||+.|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 4599999999999999999998753233333332 2578899999774
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=74.53 E-value=5.4 Score=32.51 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=53.6
Q ss_pred CeEEEcCCCCCCC-----HHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCe-EEEEe
Q 021890 101 TRLVAQNVPWTST-----HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR-TLKVN 174 (306)
Q Consensus 101 ~~l~V~nL~~~~t-----~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~-~l~v~ 174 (306)
.++.+.+++..+- ......+|..|.+..-.++++ +.++--|.|.+.+.|..|...+++..|.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 3466777766542 223455666666655555553 366777889999999999999999999998 88888
Q ss_pred eecccC
Q 021890 175 YAKIKK 180 (306)
Q Consensus 175 ~~~~~~ 180 (306)
++.+..
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 877654
No 220
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.94 E-value=9.6 Score=34.96 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=51.8
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 267 (306)
...|-|.++|...--+||...|..|.+.-.+|.++-|. .||-.|.+...|..||.. ...+++=|+|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~-kh~~lKiRpL 456 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL-KHDWLKIRPL 456 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc-cCceEEeeeh
Confidence 46799999999999999999999987777777777543 699999999999999974 3334443433
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.67 E-value=2.6 Score=36.56 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=51.2
Q ss_pred ceeeecCCCh------------hhhHHHHHHHHHhcCCCeeEEEEEec-C----CCCCCc-----cE---------EEEE
Q 021890 195 FNLFIANLSF------------EARAKDLREFFISEGWDVVSAEVIFH-D----NPRRSA-----GY---------GFVS 243 (306)
Q Consensus 195 ~~l~V~nL~~------------~~t~~~l~~~F~~~~G~v~~v~i~~~-~----~tg~~~-----g~---------afV~ 243 (306)
.+|++.+||- --+++.|+..|+.| |.|..|.|+.- + .+|+.. || |||.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf-g~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF-GEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHh-ccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 4677777763 24678899999998 99998887532 1 234332 22 3455
Q ss_pred eCCHHHHHHHHHHhCCceeC----C----eeEEEeeCcch
Q 021890 244 FKSKKVAETAISAFQGKLFM----G----RPLRVAPSRQF 275 (306)
Q Consensus 244 f~~~~~a~~Al~~l~g~~i~----g----~~l~v~~a~~~ 275 (306)
|-.......|+.+|.|..+. | -.|+|.|.+++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 66666667778888876442 3 45677775543
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=67.14 E-value=13 Score=25.27 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcch
Q 021890 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF 275 (306)
Q Consensus 209 ~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~ 275 (306)
++|.+-|...+-.|..+.-+....++.+...-||+.+...+... .++=..++|..|+|...+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46777788764588888877777677888889999887655222 34456778888988876543
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=66.60 E-value=21 Score=25.30 Aligned_cols=54 Identities=13% Similarity=0.061 Sum_probs=40.5
Q ss_pred CCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 201 NLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 201 nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
..+...+..+|++.++.++| .|.+|..+.-+. ...-|||.+....+|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 35668888889888887555 788888776542 3457999999988888776554
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=63.93 E-value=27 Score=24.32 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=42.1
Q ss_pred eeecCCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 197 l~V~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
-|+-.++...+..+|+..++..+| .|..|..+.-+. ...-|||.+...+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 344446778899999988887545 788887776542 3456999999888888766544
No 225
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=62.82 E-value=43 Score=24.05 Aligned_cols=49 Identities=18% Similarity=0.074 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 021890 207 RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (306)
Q Consensus 207 t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g 259 (306)
..+.++++++.++|+++++.+.. |.--....+++.+.+.|.++...+..
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 45678899999989999998876 44567889999999998887765543
No 226
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=61.38 E-value=16 Score=24.83 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 209 ~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.+|.+-|++.+-.+..+.-+....++.+...-+|+.....+-.. .|+=..++|++|.|.-.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888875588889888888777888888999877544333 244556788888887543
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.34 E-value=19 Score=33.11 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=45.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCe-EEEEEeecCCCCcceEEEEEeCCHHHHHHHHH
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTV-LDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i-~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~ 159 (306)
.+.|-|.++|.....+||...|..|+.- -+|.++. ...||-.|.+...|..|+-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD------dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD------DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee------cceeEEeecchHHHHHHhh
Confidence 4788999999999999999999999863 3566654 4589999999999999987
No 228
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.40 E-value=1.2e+02 Score=29.86 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc--CCcc------cCeEEEEeeecccC
Q 021890 109 PWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEF------EGRTLKVNYAKIKK 180 (306)
Q Consensus 109 ~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~------~g~~l~v~~~~~~~ 180 (306)
++..-.++|.+.|..-+.+..+.+.- .||-++.+....-+......+. +..+ .|++|.|+|..+..
T Consensus 55 ~P~eiA~~i~~~l~~~~~~~~veiaG------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp 128 (577)
T COG0018 55 NPREIAEEIAEKLDTDEIIEKVEIAG------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP 128 (577)
T ss_pred CHHHHHHHHHHhccccCcEeEEEEcC------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC
Confidence 33444566666776656677776641 3555555554444444444443 2222 57899999987754
Q ss_pred CCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecC
Q 021890 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231 (306)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~ 231 (306)
.. -++||.+-..+--+-|..+++..+-.|.....+-|.
T Consensus 129 tk-------------plHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 129 TG-------------PLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred CC-------------CcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 44 499999999999999999999764478777777654
No 229
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=58.32 E-value=7.2 Score=31.73 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=43.9
Q ss_pred cccccCCCCeEEEcCCCCCCCHHHHHHHhhhc-CCeEEEEEeecCCC--CcceEEEEEeCCHHHHHHHHHH
Q 021890 93 QREEEYSKTRLVAQNVPWTSTHEDIRALFEQH-GTVLDIELSMHSKN--RNRGLAFVTMGSPDEATAALNN 160 (306)
Q Consensus 93 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~-G~i~~~~~~~~~~~--~~~g~afV~f~~~~~a~~ai~~ 160 (306)
........+++|.. .|++.|.++..-. |.+..+.+.+...+ ..+|--||+|.+.+.|.+.++.
T Consensus 104 e~~~~~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 104 EYKEGIKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHHHHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 33444556777765 5555555544322 68888888766555 6789999999999999998774
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=53.04 E-value=36 Score=30.10 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=60.4
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCC-------CCCCccEEEEEeCCHHHHHHH----HHHhCC--
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN-------PRRSAGYGFVSFKSKKVAETA----ISAFQG-- 259 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~-------tg~~~g~afV~f~~~~~a~~A----l~~l~g-- 259 (306)
.++.|...|+...++--.+..-|-+| |.|++|.++.+.. .-+...-..+.|-+.+.|..- +..|..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~-~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKF-GPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhcc-CceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 36789999999999888888888887 9999999987641 112335678999998887654 333333
Q ss_pred ceeCCeeEEEeeCcchh
Q 021890 260 KLFMGRPLRVAPSRQFA 276 (306)
Q Consensus 260 ~~i~g~~l~v~~a~~~~ 276 (306)
..+....|+|+|..-..
T Consensus 93 ~~L~S~~L~lsFV~l~y 109 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNY 109 (309)
T ss_pred HhcCCcceeEEEEEEec
Confidence 25677888888865433
No 231
>PF15628 RRM_DME: RRM in Demeter
Probab=52.92 E-value=32 Score=25.10 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=27.7
Q ss_pred CCccceeeecC----CChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCcc
Q 021890 191 PFATFNLFIAN----LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAG 238 (306)
Q Consensus 191 ~~~~~~l~V~n----L~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g 238 (306)
..+.+.+|++- +=..++.++|+++|.+ |-|. .--.|..|+.++.
T Consensus 47 ~L~rr~vYfGtsv~SIfrGls~~eIq~cF~~--G~VC--VR~FDr~Tr~Prp 94 (103)
T PF15628_consen 47 NLPRRIVYFGTSVSSIFRGLSREEIQQCFWK--GFVC--VRGFDRKTRAPRP 94 (103)
T ss_pred cCCceEEEecCcHHHHhcccCHHHHHHHHhc--CcEE--EeecccccCCCcc
Confidence 33456677664 4457788999999996 6554 2234556666553
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=51.22 E-value=41 Score=22.35 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.8
Q ss_pred HHHHHHhhhcCCeEEEEE
Q 021890 115 EDIRALFEQHGTVLDIEL 132 (306)
Q Consensus 115 ~~L~~~f~~~G~i~~~~~ 132 (306)
.+|+++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999875544
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.36 E-value=24 Score=26.75 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=27.1
Q ss_pred CCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHH-HHHHHHH
Q 021890 112 STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPD-EATAALN 159 (306)
Q Consensus 112 ~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~-~a~~ai~ 159 (306)
++.++|.+.|+.|.++. ++.+.+.. .+.|++.|.|..-- --..|++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 35689999999999875 55555544 45899999996543 3445555
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.34 E-value=1.2e+02 Score=21.46 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-cCC-eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHH
Q 021890 103 LVAQNVPWTSTHEDIRALFEQ-HGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNN 160 (306)
Q Consensus 103 l~V~nL~~~~t~~~L~~~f~~-~G~-i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 160 (306)
-|+--.+...+..++++.++. ||. |.+|..+.... ...-|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CcEEEEEEeCCCCcHHHHHHh
Confidence 445557889999999999986 665 67776655542 245699999988888776543
No 235
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=41.85 E-value=4.6 Score=38.52 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 167 (306)
.+.|+|.|++++++-++|..+++.+-.+..+.+.... ......+++|+|.---...-|+..||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4678999999999999999999988766665543332 2455778999998777777777777776553
No 236
>PRK11901 hypothetical protein; Reviewed
Probab=38.97 E-value=2.2e+02 Score=25.78 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=40.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEE--eCCHHHHHHHHHHhcC
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVT--MGSPDEATAALNNLES 163 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~--f~~~~~a~~ai~~l~~ 163 (306)
.....+|-|.. ...++.|..|.+.++. ..+++.... +|+ ..|..|. |.+.++|..|+..|-.
T Consensus 242 p~~~YTLQL~A---as~~~~L~~f~~~~~L-~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSS---ASRSDTLNAYAKKQNL-SHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeec---CCCHHHHHHHHHHcCc-CceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 44455666655 4568889999888863 445555443 343 3454443 8999999999998754
No 237
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=38.77 E-value=83 Score=21.27 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=43.6
Q ss_pred HHHHHHhhhcCC-eEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 115 EDIRALFEQHGT-VLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 115 ~~L~~~f~~~G~-i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
++|.+-|...|- |..+.-+..+ ++.+...-||+.....+...+ ++=..+.|..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 467778888885 6666555555 567778899998877664443 4555688899999876643
No 238
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=37.25 E-value=92 Score=25.59 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=38.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHhCCceeCCe-eEEEeeCcchhhhhccccCC
Q 021890 236 SAGYGFVSFKSKKVAETAISAFQGKLFMGR-PLRVAPSRQFARLQTKEGLH 285 (306)
Q Consensus 236 ~~g~afV~f~~~~~a~~Al~~l~g~~i~g~-~l~v~~a~~~~~~~~~~~~~ 285 (306)
+.+...|.|.+.+.|..|..++++..|.|+ .++.-|+.+...-..+..+.
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~~~~q~L~ 100 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPESNSQYLQ 100 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCccccccccC
Confidence 455677999999999999999999999998 88888887655544333333
No 239
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=37.08 E-value=49 Score=30.64 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=31.6
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHHhhhc----CCeEEEEEeecCCC
Q 021890 97 EYSKTRLVAQNVPWT-STHEDIRALFEQH----GTVLDIELSMHSKN 138 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~-~t~~~L~~~f~~~----G~i~~~~~~~~~~~ 138 (306)
.....+|-|-||.|+ +...+|..+|+.| |.+..+.|....-|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefG 189 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFG 189 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhh
Confidence 344677889999986 7889999999876 55777888765434
No 240
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.78 E-value=33 Score=31.39 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=50.3
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCC--CCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPR--RSAGYGFVSFKSKKVAETAISAFQGKLFM 263 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg--~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 263 (306)
..+.|.+||+.+++.++.+-..+|--.+..........+- .-.+.|+|.|...++...-....+|++|-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 5688999999999999988888765455555554321111 12566899999999988888888888764
No 241
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.13 E-value=53 Score=22.30 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=20.8
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCcee
Q 021890 238 GYGFVSFKSKKVAETAISAFQGKLF 262 (306)
Q Consensus 238 g~afV~f~~~~~a~~Al~~l~g~~i 262 (306)
.+++|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999888876544
No 242
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.01 E-value=59 Score=29.09 Aligned_cols=33 Identities=36% Similarity=0.304 Sum_probs=23.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 144 AFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 144 afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
|||+|++..+|+.|++.+... +++.+.+..|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCC
Confidence 799999999999999954433 234556665544
No 243
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=35.78 E-value=86 Score=22.38 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=30.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeC
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~ 149 (306)
.-|||||++..+.+.-...+.+..+.-. +.+.....+ ..||+|-++.
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEccCC-CCCEEEEEeC
Confidence 3499999999887665555555544433 333333333 7899998873
No 244
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.67 E-value=33 Score=29.28 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=29.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEE
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI 130 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~ 130 (306)
......++|+-|+|..+|++.|..+.+.+|.+...
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44556889999999999999999999999965544
No 245
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=34.83 E-value=1.2e+02 Score=29.66 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=56.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE-E--eeecccC---------CCCCCCCCCCCCccceeeecCCChhhhH
Q 021890 141 RGLAFVTMGSPDEATAALNNLESYEFEGRTLK-V--NYAKIKK---------KNPFPPVQPKPFATFNLFIANLSFEARA 208 (306)
Q Consensus 141 ~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~-v--~~~~~~~---------~~~~~~~~~~~~~~~~l~V~nL~~~~t~ 208 (306)
.--||+++.++.--+-..+.|+...+.+..|. + +|+..-. ....--..++...+..+|+.+|..++.+
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~ 315 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPE 315 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCH
Confidence 44699999888776666665655444332222 0 1111000 0000013345556788999999988888
Q ss_pred HHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCC
Q 021890 209 KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS 246 (306)
Q Consensus 209 ~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~ 246 (306)
+.=.++.... --.+.+.|++ .||| |+|+-
T Consensus 316 dVQ~~~irsi-pGlEna~i~r-------pgYA-IEYD~ 344 (621)
T COG0445 316 DVQEQIIRSI-PGLENAEILR-------PGYA-IEYDY 344 (621)
T ss_pred HHHHHHHHhC-cccccceeec-------ccee-eeecc
Confidence 8777777765 4577887775 3566 66643
No 246
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.12 E-value=6.6 Score=37.50 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=52.3
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 267 (306)
.++|+|.|++++++-++|..+++.+-| +..+-+..+.--..-...++|.|+-.-....|+.+|||..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~-~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPG-FLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCch-heeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 468999999999999999999997633 3333222221112234568899999888899999999887665443
No 247
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.85 E-value=1.3e+02 Score=23.73 Aligned_cols=57 Identities=7% Similarity=0.047 Sum_probs=38.8
Q ss_pred eeecCCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 021890 197 LFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 197 l~V~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~ 256 (306)
-|+-.++...+..+|++.++..+| .|..|..+..+. ...-|||.+....+|......
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 344445668888899988887544 677777776543 234699999887776654443
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.76 E-value=1.7e+02 Score=20.33 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=39.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-cCC-eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHH
Q 021890 103 LVAQNVPWTSTHEDIRALFEQ-HGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159 (306)
Q Consensus 103 l~V~nL~~~~t~~~L~~~f~~-~G~-i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~ 159 (306)
-|+-.++.+.+..+|++.++. ||. |.++..+..+. ...-|||.+.....|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~--~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR--GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CceEEEEEECCCCcHHHHHH
Confidence 556668899999999999986 564 66666654442 24569999988877766544
No 249
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=32.06 E-value=27 Score=25.03 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=25.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS 136 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~ 136 (306)
.....++|.|.|||....+++|++.+ .|.+-+..
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L-------eIhFqK~s 81 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL-------EIHFQKPS 81 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE-------EEEEecCC
Confidence 34557889999999999999999764 45555544
No 250
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.73 E-value=11 Score=35.07 Aligned_cols=81 Identities=9% Similarity=-0.141 Sum_probs=60.8
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
...++..++...+++++.-+|+.+ |.|..+...+.-+.|...-.+||.-.. .++..++..+.-..+.|..++++.+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~-~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDP-SIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCC-cceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 346788899999999999999997 888888776665556666677877653 456667766666677788888888766
Q ss_pred hhh
Q 021890 275 FAR 277 (306)
Q Consensus 275 ~~~ 277 (306)
...
T Consensus 82 s~~ 84 (572)
T KOG4365|consen 82 SSE 84 (572)
T ss_pred hhh
Confidence 553
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.76 E-value=64 Score=29.61 Aligned_cols=68 Identities=16% Similarity=0.343 Sum_probs=48.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEE-EeecCC---CCcceEEEEEeCCHHHHHHHHHHhcCCcc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSK---NRNRGLAFVTMGSPDEATAALNNLESYEF 166 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~-~~~~~~---~~~~g~afV~f~~~~~a~~ai~~l~~~~~ 166 (306)
....|.|.+||+..++.+|.+-...|-.-+... +..... ..-.+.|||-|...++...-...++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346788999999999999998888765533332 321211 22366899999999998877777777654
No 252
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.71 E-value=78 Score=27.74 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=28.3
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHhhhcCCeEEEEEe
Q 021890 98 YSKTRLVAQNVPWT------------STHEDIRALFEQHGTVLDIELS 133 (306)
Q Consensus 98 ~~~~~l~V~nL~~~------------~t~~~L~~~f~~~G~i~~~~~~ 133 (306)
....+||+.+||-. -+++-|+..|..||.|..+.|.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34567999998853 2578899999999999887764
No 253
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=28.60 E-value=40 Score=32.36 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=37.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhhhh
Q 021890 237 AGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 237 ~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
.+|+++.|.+.+.+.+|+..++|..+.+..+++..+.......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~~ 105 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGSL 105 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccccc
Confidence 5689999999999999999999999999999988877665433
No 254
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=28.22 E-value=2.5e+02 Score=27.07 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=41.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhh----hcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 021890 102 RLVAQNVPWTSTHEDIRALFE----QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~----~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 162 (306)
.+.++.-..+...-+|..+|. .+|.|.++.+...+.-......++.|.+.++|..++..+.
T Consensus 191 i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 191 ALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred EEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 344443222233456777665 5788999888766654556778899999999999988764
No 255
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.10 E-value=93 Score=21.06 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=21.8
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCcccCe
Q 021890 142 GLAFVTMGSPDEATAALNNLESYEFEGR 169 (306)
Q Consensus 142 g~afV~f~~~~~a~~ai~~l~~~~~~g~ 169 (306)
.+.+|.|.+..+|.+|-+.|....+.++
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999999988776544333
No 256
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=27.64 E-value=28 Score=32.09 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=49.7
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHhhh--cCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHH
Q 021890 100 KTRLVAQNVPWTSTHE--------DIRALFEQ--HGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALN 159 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~--------~L~~~f~~--~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~ 159 (306)
.+.+|+.++......+ ++...|.. .+.+..+++.++. ...++|.-|++|...+.++++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4678888887766555 89999998 7788888888877 67789999999999999999864
No 257
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=25.79 E-value=77 Score=23.91 Aligned_cols=114 Identities=13% Similarity=0.168 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCc--ccCeEEEEeeecccCCCCCC
Q 021890 108 VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE--FEGRTLKVNYAKIKKKNPFP 185 (306)
Q Consensus 108 L~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~--~~g~~l~v~~~~~~~~~~~~ 185 (306)
||+.+ +.|.+.|+.-|+|.++..+.. |.+ ++ |+-.++|.. ++|. |+|.-........
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtq------------ypd-nd---al~~~~G~lE~vDg~-i~IGs~q~~~sV~-- 69 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQ------------YPD-ND---ALLYVHGTLEQVDGN-IRIGSGQTPASVR-- 69 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEec------------cCC-ch---hhheeeeehhhccCc-EEEccCCCcccEE--
Confidence 77776 468899999999998866532 111 11 232244432 3444 5554332111100
Q ss_pred CCCCCCCccceeeecCCChhhhHHHHHHHHHh---cCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 021890 186 PVQPKPFATFNLFIANLSFEARAKDLREFFIS---EGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (306)
Q Consensus 186 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~---~~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 247 (306)
....++. --|.--|+.+|-.+++++|.. | -.|..-.+.+|--...+-..||..|...
T Consensus 70 ---i~gTPsg-nnv~F~PYTlT~~e~r~iF~Epm~Y-QGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 70 ---IQGTPSG-NNVIFPPYTLTYNELRQIFREPMVY-QGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ---EecCCCC-CceecCceeeeHHHHHHHHhhhhhh-ccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0000010 012224778899999999974 2 1222222333311112344688877654
No 258
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.55 E-value=1.5e+02 Score=28.60 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=44.3
Q ss_pred EEcCCCCCCC---HHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEE
Q 021890 104 VAQNVPWTST---HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (306)
Q Consensus 104 ~V~nL~~~~t---~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 171 (306)
+||||+.--. -..|.++=++||+|-.+++- ..-.|.-.+.+.|+.|+.. ++..+.||..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG--------~~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG--------SVPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec--------CceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4788765433 35566666789999977762 2357888899999999995 8999988876
No 259
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.69 E-value=1e+02 Score=26.91 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=25.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEe
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~ 133 (306)
....|+|||++++..-|.+++...-.+....++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 357799999999999999999876655444443
No 260
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.91 E-value=2.2e+02 Score=18.40 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=35.9
Q ss_pred eeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 021890 197 LFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261 (306)
Q Consensus 197 l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~ 261 (306)
|.+.|-|..+ .++-++|.+.+..|.++...... . ++..-+.+.+.+.|.++++. +|+.
T Consensus 6 v~v~d~pG~L--a~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 6 VFLENKPGRL--AAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred EEEcCCCChH--HHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 4444444333 47788888776688888764432 2 46666677777777777764 4554
No 261
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.83 E-value=36 Score=31.42 Aligned_cols=62 Identities=16% Similarity=0.034 Sum_probs=48.5
Q ss_pred cceeeecCCChhhhHH--------HHHHHHHhc-CCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 194 TFNLFIANLSFEARAK--------DLREFFISE-GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~--------~l~~~F~~~-~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
.+.+|+.+.+.....+ ++...|..+ ++.+..+...++......+|..|++|.....+++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567777777655444 899999873 3788888888887566788999999999999998873
No 262
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=22.74 E-value=3e+02 Score=19.89 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=30.4
Q ss_pred eeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEe----cCCCCCCccEEEEEeC
Q 021890 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIF----HDNPRRSAGYGFVSFK 245 (306)
Q Consensus 196 ~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~----~~~tg~~~g~afV~f~ 245 (306)
..|+.+||..+-+.++...-..+.....++.|.. ....+.+.|++.+-+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4688999999988776655554423344555554 2444667777766554
No 263
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.52 E-value=2.5e+02 Score=18.87 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=29.1
Q ss_pred CHHHHHHHhhhcCC-eEEEEEeecCCCCcceEEEEEeC-CHHHHHHHHHHhcC
Q 021890 113 THEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMG-SPDEATAALNNLES 163 (306)
Q Consensus 113 t~~~L~~~f~~~G~-i~~~~~~~~~~~~~~g~afV~f~-~~~~a~~ai~~l~~ 163 (306)
.-.++-+.|+.+|. +.+|.-.+.+.+...-+-||++. ..+..++|++.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 35677778888875 44443322222233335667776 44556777777654
No 264
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.51 E-value=1e+02 Score=21.64 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHhCCcee
Q 021890 236 SAGYGFVSFKSKKVAETAISAFQGKLF 262 (306)
Q Consensus 236 ~~g~afV~f~~~~~a~~Al~~l~g~~i 262 (306)
-+||-|||=.+..++..|++.+.+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceee
Confidence 689999999999999999987665443
No 265
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.36 E-value=1.6e+02 Score=21.48 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=29.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCH
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSP 151 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~ 151 (306)
.-||||+++..+.+.--..+-+.++.- ++.+.. .+....||+|-++.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~-~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAW-ATNTESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEE-cCCCCCCcEEEecCCC
Confidence 449999998888765444555545442 233333 2223359999888654
No 266
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.30 E-value=1e+02 Score=27.61 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=23.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 240 GFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 240 afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
|||.|++..+|..|++.+....- +.+.+..|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 79999999999999996655543 334555543
No 267
>PF14893 PNMA: PNMA
Probab=21.19 E-value=1e+02 Score=28.00 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhh-cCCeEEEEEeec--CCCCcceEEEEEeCCH
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQ-HGTVLDIELSMH--SKNRNRGLAFVTMGSP 151 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~-~G~i~~~~~~~~--~~~~~~g~afV~f~~~ 151 (306)
..+.|.|.+||.++++++|.+.+.. +-+.-..++... .......-|+|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 3567999999999999999998864 223323333221 1112255788888644
No 268
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.63 E-value=76 Score=18.57 Aligned_cols=16 Identities=6% Similarity=0.341 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHhhhcC
Q 021890 110 WTSTHEDIRALFEQHG 125 (306)
Q Consensus 110 ~~~t~~~L~~~f~~~G 125 (306)
.++++++|++.|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998754
No 269
>PRK10905 cell division protein DamX; Validated
Probab=20.44 E-value=3.4e+02 Score=24.55 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=37.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEE--EeCCHHHHHHHHHHhc
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFV--TMGSPDEATAALNNLE 162 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV--~f~~~~~a~~ai~~l~ 162 (306)
....+|-|+- ..+++.|..|..+.|.-....+...++|+ ..|-.+ .|.+.++|++|+..|-
T Consensus 245 a~~YTLQL~A---~Ss~~~l~~fakKlgL~~y~vy~TtRnGk-pWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 245 SSHYTLQLSS---SSNYDNLNGWAKKENLKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CCceEEEEEe---cCCHHHHHHHHHHcCCCceEEEEeccCCc-eEEEEEecCCCCHHHHHHHHHHCC
Confidence 3445666665 45668888888887643222222223443 234333 3899999999999875
No 270
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=20.27 E-value=4e+02 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=14.4
Q ss_pred CCCCCCccEEEEEeCCHHHHHH
Q 021890 231 DNPRRSAGYGFVSFKSKKVAET 252 (306)
Q Consensus 231 ~~tg~~~g~afV~f~~~~~a~~ 252 (306)
-.+|++.|||.| |++.+.|.+
T Consensus 64 ~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 64 FGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred cCCcccceeeee-eehHHHHHh
Confidence 456788899965 666665543
Done!