Query 021890
Match_columns 306
No_of_seqs 272 out of 2390
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 100.0 3.9E-37 1.3E-41 249.7 21.1 166 101-274 1-166 (166)
2 4f02_A Polyadenylate-binding p 100.0 3.4E-37 1.2E-41 261.3 18.7 172 99-280 14-186 (213)
3 1fxl_A Paraneoplastic encephal 100.0 6E-36 2E-40 243.0 21.3 163 100-272 2-167 (167)
4 1l3k_A Heterogeneous nuclear r 100.0 4.3E-36 1.5E-40 250.6 20.8 177 97-279 10-187 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 5.1E-36 1.8E-40 243.9 20.0 164 99-272 2-168 (168)
6 2qfj_A FBP-interacting repress 100.0 2E-35 6.7E-40 250.3 20.1 181 98-279 26-209 (216)
7 2cjk_A Nuclear polyadenylated 100.0 6.9E-36 2.4E-40 243.0 12.2 164 99-275 2-166 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 2.1E-34 7.1E-39 235.8 19.8 165 99-273 2-175 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 5.9E-34 2E-38 232.7 18.9 158 99-272 3-171 (172)
10 2yh0_A Splicing factor U2AF 65 100.0 1.1E-33 3.9E-38 236.2 19.8 172 99-277 3-196 (198)
11 1fje_B Nucleolin RBD12, protei 100.0 1.8E-34 6.1E-39 236.6 11.7 166 96-275 9-174 (175)
12 3tyt_A Heterogeneous nuclear r 100.0 3.6E-33 1.2E-37 234.9 19.1 167 99-272 3-204 (205)
13 3smz_A Protein raver-1, ribonu 100.0 7.8E-33 2.7E-37 244.3 21.4 172 99-278 94-267 (284)
14 2ghp_A U4/U6 snRNA-associated 100.0 3.4E-33 1.2E-37 247.6 17.7 173 99-275 116-291 (292)
15 3pgw_A U1-A; protein-RNA compl 100.0 2.2E-32 7.5E-37 241.2 22.1 170 97-274 6-282 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 5.9E-32 2E-36 231.5 20.3 168 98-275 32-228 (229)
17 3smz_A Protein raver-1, ribonu 100.0 9.8E-32 3.3E-36 237.2 21.1 160 96-277 18-177 (284)
18 3sde_A Paraspeckle component 1 100.0 7E-32 2.4E-36 235.5 19.0 158 98-277 20-181 (261)
19 1qm9_A Polypyrimidine tract-bi 100.0 4.2E-32 1.5E-36 227.0 15.9 167 99-275 2-197 (198)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.1E-31 7.2E-36 236.0 18.3 165 95-279 36-201 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.3E-24 4.3E-29 175.2 15.1 147 129-277 2-152 (158)
22 4f25_A Polyadenylate-binding p 99.9 8.9E-24 3E-28 161.2 10.7 109 100-210 5-113 (115)
23 2i2y_A Fusion protein consists 99.9 1.1E-23 3.6E-28 168.4 9.9 132 138-276 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.5E-21 5.2E-26 144.6 11.3 81 98-178 17-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.9 1.4E-21 4.9E-26 144.8 10.9 80 194-274 19-98 (99)
26 3s8s_A Histone-lysine N-methyl 99.8 2.2E-20 7.6E-25 141.0 11.2 86 192-278 4-89 (110)
27 2lea_A Serine/arginine-rich sp 99.8 4.5E-21 1.5E-25 150.3 7.4 127 142-279 5-131 (135)
28 1u6f_A Tcubp1, RNA-binding pro 99.8 9.4E-20 3.2E-24 143.4 15.0 85 99-183 41-126 (139)
29 2lxi_A RNA-binding protein 10; 99.8 4.5E-21 1.5E-25 139.9 5.6 82 195-277 2-85 (91)
30 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.2E-20 1.1E-24 150.5 11.2 133 146-279 11-156 (165)
31 3s8s_A Histone-lysine N-methyl 99.8 5.2E-20 1.8E-24 138.9 11.5 81 99-179 5-86 (110)
32 2do4_A Squamous cell carcinoma 99.8 8E-20 2.7E-24 135.5 12.3 85 97-181 14-98 (100)
33 2lxi_A RNA-binding protein 10; 99.8 8.7E-21 3E-25 138.3 6.9 82 101-182 2-86 (91)
34 3md1_A Nuclear and cytoplasmic 99.8 9E-20 3.1E-24 130.4 10.5 82 194-276 1-82 (83)
35 2lkz_A RNA-binding protein 5; 99.8 1.6E-20 5.5E-25 137.7 6.3 80 194-274 9-94 (95)
36 3lqv_A PRE-mRNA branch site pr 99.8 1.2E-19 4.1E-24 138.1 11.5 101 99-218 7-107 (115)
37 2fy1_A RNA-binding motif prote 99.8 1.4E-19 4.7E-24 138.0 11.8 85 98-182 5-89 (116)
38 3ns6_A Eukaryotic translation 99.8 6.4E-20 2.2E-24 136.1 9.2 85 194-279 6-97 (100)
39 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-19 5.3E-24 130.3 11.0 81 99-179 5-86 (87)
40 3md1_A Nuclear and cytoplasmic 99.8 2.1E-19 7.2E-24 128.5 11.2 80 101-180 2-82 (83)
41 2hvz_A Splicing factor, argini 99.8 9.3E-20 3.2E-24 135.4 9.6 99 101-203 1-100 (101)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-19 5.3E-24 130.3 10.5 82 193-275 5-86 (87)
43 2lkz_A RNA-binding protein 5; 99.8 4.7E-20 1.6E-24 135.2 7.8 81 98-178 7-94 (95)
44 3p5t_L Cleavage and polyadenyl 99.8 3.2E-20 1.1E-24 135.0 6.9 82 101-182 2-86 (90)
45 2cpz_A CUG triplet repeat RNA- 99.8 2.7E-19 9.4E-24 136.1 12.1 87 97-183 22-109 (115)
46 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-19 1E-23 133.6 12.1 85 98-182 13-100 (105)
47 2d9p_A Polyadenylate-binding p 99.8 2.6E-19 9E-24 133.4 11.7 87 96-183 11-97 (103)
48 2cq0_A Eukaryotic translation 99.8 2.3E-19 7.9E-24 133.8 11.3 87 96-182 11-98 (103)
49 1whw_A Hypothetical protein ri 99.8 2.6E-19 8.9E-24 132.4 11.5 85 98-182 6-91 (99)
50 2dgo_A Cytotoxic granule-assoc 99.8 4E-19 1.4E-23 135.2 12.6 88 96-183 11-99 (115)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.8E-19 6.1E-24 129.4 10.0 80 98-177 5-85 (85)
52 2cq0_A Eukaryotic translation 99.8 2.3E-19 7.9E-24 133.8 10.8 88 191-279 12-99 (103)
53 2ywk_A Putative RNA-binding pr 99.8 2.2E-19 7.4E-24 131.8 10.5 82 97-178 13-94 (95)
54 4f25_A Polyadenylate-binding p 99.8 1.6E-19 5.5E-24 137.5 10.0 83 194-279 5-87 (115)
55 3p5t_L Cleavage and polyadenyl 99.8 4.9E-20 1.7E-24 134.0 6.8 83 195-278 2-86 (90)
56 2x1f_A MRNA 3'-END-processing 99.8 2.3E-19 7.8E-24 132.0 10.5 85 193-278 1-85 (96)
57 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.9E-19 6.5E-24 129.3 9.8 81 192-273 5-85 (85)
58 1whw_A Hypothetical protein ri 99.8 3E-19 1E-23 132.1 11.1 87 192-279 6-92 (99)
59 2x1f_A MRNA 3'-END-processing 99.8 2.9E-19 9.9E-24 131.5 10.7 82 100-181 2-84 (96)
60 2dnz_A Probable RNA-binding pr 99.8 2.6E-19 9E-24 131.3 10.5 86 193-279 4-89 (95)
61 2cpz_A CUG triplet repeat RNA- 99.8 2.4E-19 8.4E-24 136.4 10.6 88 191-279 22-109 (115)
62 2dnz_A Probable RNA-binding pr 99.8 4.8E-19 1.6E-23 130.0 11.6 85 99-183 4-89 (95)
63 2dgs_A DAZ-associated protein 99.8 4.1E-19 1.4E-23 131.4 11.4 86 97-183 7-93 (99)
64 2dgo_A Cytotoxic granule-assoc 99.8 7.5E-19 2.6E-23 133.6 13.1 88 191-279 12-99 (115)
65 2cqc_A Arginine/serine-rich sp 99.8 5.9E-19 2E-23 129.4 12.0 84 190-274 11-94 (95)
66 2cq3_A RNA-binding protein 9; 99.8 9.7E-19 3.3E-23 130.4 13.4 87 96-183 11-97 (103)
67 1x5t_A Splicing factor 3B subu 99.8 1.5E-19 5.2E-24 132.9 8.6 86 193-279 4-90 (96)
68 2khc_A Testis-specific RNP-typ 99.8 3E-19 1E-23 136.5 10.6 82 96-177 36-118 (118)
69 2cqi_A Nucleolysin TIAR; RNA r 99.8 9.4E-19 3.2E-23 130.4 12.9 86 96-182 11-96 (103)
70 2cqc_A Arginine/serine-rich sp 99.8 4.2E-19 1.4E-23 130.2 10.9 82 97-178 12-94 (95)
71 1x5u_A Splicing factor 3B subu 99.8 4.4E-19 1.5E-23 132.7 11.0 87 96-182 11-98 (105)
72 1p27_B RNA-binding protein 8A; 99.8 4.8E-19 1.7E-23 132.7 11.2 83 98-180 21-104 (106)
73 2dnh_A Bruno-like 5, RNA bindi 99.8 6E-19 2E-23 131.9 11.5 88 192-281 13-103 (105)
74 2cph_A RNA binding motif prote 99.8 6.6E-19 2.3E-23 132.1 11.7 88 96-183 11-101 (107)
75 2dnm_A SRP46 splicing factor; 99.8 3.3E-19 1.1E-23 132.9 9.9 87 97-183 10-97 (103)
76 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.4E-19 1.2E-23 132.6 9.9 86 98-183 10-96 (102)
77 1s79_A Lupus LA protein; RRM, 99.8 1.7E-19 5.9E-24 134.4 8.3 81 97-178 8-88 (103)
78 2do4_A Squamous cell carcinoma 99.8 7.3E-19 2.5E-23 130.3 11.7 85 191-277 14-98 (100)
79 2e5h_A Zinc finger CCHC-type a 99.8 5.2E-19 1.8E-23 129.5 10.7 80 98-177 14-94 (94)
80 1x5s_A Cold-inducible RNA-bind 99.8 4.4E-19 1.5E-23 131.9 10.5 87 97-183 9-96 (102)
81 1p27_B RNA-binding protein 8A; 99.8 4.5E-19 1.5E-23 132.8 10.5 85 191-276 20-104 (106)
82 2dnm_A SRP46 splicing factor; 99.8 1.9E-19 6.5E-24 134.2 8.3 88 191-279 10-97 (103)
83 2e5h_A Zinc finger CCHC-type a 99.8 7.3E-19 2.5E-23 128.7 11.3 82 191-273 13-94 (94)
84 1sjq_A Polypyrimidine tract-bi 99.8 4.4E-19 1.5E-23 131.6 10.1 80 99-183 15-96 (105)
85 2dgs_A DAZ-associated protein 99.8 4.5E-19 1.5E-23 131.2 10.2 86 191-278 7-92 (99)
86 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.7E-19 9.1E-24 133.1 9.0 87 192-279 10-96 (102)
87 2jrs_A RNA-binding protein 39; 99.8 4.4E-19 1.5E-23 133.5 10.2 82 99-180 25-107 (108)
88 2la6_A RNA-binding protein FUS 99.8 5.4E-19 1.8E-23 130.8 10.6 83 190-273 9-99 (99)
89 1x5t_A Splicing factor 3B subu 99.8 5.3E-19 1.8E-23 130.0 10.3 84 99-182 4-89 (96)
90 1x5s_A Cold-inducible RNA-bind 99.8 3.5E-19 1.2E-23 132.5 9.4 86 192-278 10-95 (102)
91 2cpf_A RNA binding motif prote 99.8 6.9E-19 2.4E-23 129.9 10.9 85 99-183 4-92 (98)
92 1x5u_A Splicing factor 3B subu 99.8 5.3E-19 1.8E-23 132.2 10.4 87 191-278 12-98 (105)
93 1x4h_A RNA-binding protein 28; 99.8 1E-18 3.5E-23 132.0 12.1 87 97-183 12-105 (111)
94 1x4h_A RNA-binding protein 28; 99.8 8.3E-19 2.8E-23 132.5 11.5 88 190-278 11-104 (111)
95 1oo0_B CG8781-PA, drosophila Y 99.8 5.1E-19 1.7E-23 133.5 10.3 86 191-277 23-108 (110)
96 1oo0_B CG8781-PA, drosophila Y 99.8 6.8E-19 2.3E-23 132.8 10.9 85 97-181 23-108 (110)
97 2cpf_A RNA binding motif prote 99.8 3.9E-19 1.3E-23 131.2 9.3 86 193-279 4-92 (98)
98 2do0_A HnRNP M, heterogeneous 99.8 2E-18 6.8E-23 131.0 13.4 83 98-180 13-95 (114)
99 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-18 3.9E-23 137.2 12.4 91 190-281 38-128 (139)
100 3n9u_C Cleavage and polyadenyl 99.8 5.7E-19 2E-23 141.5 10.6 81 99-179 54-137 (156)
101 2dhg_A TRNA selenocysteine ass 99.8 7.2E-19 2.5E-23 131.3 10.5 85 98-182 7-93 (104)
102 2cph_A RNA binding motif prote 99.8 9.1E-19 3.1E-23 131.4 11.1 88 190-278 11-100 (107)
103 3ulh_A THO complex subunit 4; 99.8 1.1E-18 3.7E-23 131.0 11.4 80 98-177 27-106 (107)
104 2jrs_A RNA-binding protein 39; 99.8 5.4E-19 1.9E-23 132.9 9.7 85 190-275 22-106 (108)
105 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.8E-23 125.9 11.0 80 96-176 7-87 (87)
106 2la6_A RNA-binding protein FUS 99.8 8.5E-19 2.9E-23 129.7 10.5 79 99-177 12-99 (99)
107 3ns6_A Eukaryotic translation 99.8 1.4E-19 4.7E-24 134.3 6.1 80 100-179 6-93 (100)
108 1s79_A Lupus LA protein; RRM, 99.8 5.7E-19 2E-23 131.5 9.4 86 192-280 9-94 (103)
109 2dgp_A Bruno-like 4, RNA bindi 99.8 7.5E-19 2.6E-23 131.6 10.0 88 96-183 9-100 (106)
110 2dgx_A KIAA0430 protein; RRM d 99.8 1.1E-18 3.8E-23 128.4 10.8 81 99-181 8-92 (96)
111 2dgp_A Bruno-like 4, RNA bindi 99.8 7.9E-19 2.7E-23 131.5 10.1 87 191-278 10-99 (106)
112 2kxn_B Transformer-2 protein h 99.8 6.2E-19 2.1E-23 136.9 9.8 84 97-180 43-127 (129)
113 2fy1_A RNA-binding motif prote 99.8 1.1E-18 3.7E-23 133.0 10.9 85 193-279 6-90 (116)
114 3r27_A HnRNP L, heterogeneous 99.8 1.1E-18 3.9E-23 128.2 10.4 77 99-180 20-98 (100)
115 2dng_A Eukaryotic translation 99.8 2.1E-18 7E-23 128.6 12.0 84 98-183 13-97 (103)
116 2err_A Ataxin-2-binding protei 99.8 5.8E-19 2E-23 133.0 9.1 83 96-179 25-107 (109)
117 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-18 4.8E-23 126.7 10.9 83 99-182 7-89 (92)
118 3n9u_C Cleavage and polyadenyl 99.8 8.9E-19 3.1E-23 140.4 10.6 83 194-277 55-139 (156)
119 2d9p_A Polyadenylate-binding p 99.8 1.2E-18 4.1E-23 129.8 10.6 86 191-279 12-97 (103)
120 2dgw_A Probable RNA-binding pr 99.8 1.5E-18 5.2E-23 126.3 10.9 82 97-180 7-88 (91)
121 2dhg_A TRNA selenocysteine ass 99.8 9.6E-19 3.3E-23 130.6 10.0 86 192-279 7-94 (104)
122 2div_A TRNA selenocysteine ass 99.8 8.8E-19 3E-23 129.6 9.7 84 192-276 7-95 (99)
123 2div_A TRNA selenocysteine ass 99.8 8.2E-19 2.8E-23 129.7 9.5 83 98-180 7-95 (99)
124 4a8x_A RNA-binding protein wit 99.8 1.1E-18 3.8E-23 126.0 10.0 82 99-180 3-86 (88)
125 3ucg_A Polyadenylate-binding p 99.8 1.5E-18 5.2E-23 125.6 10.7 80 99-179 5-85 (89)
126 2cqd_A RNA-binding region cont 99.8 1.7E-18 5.8E-23 131.9 11.4 84 96-180 13-97 (116)
127 2dng_A Eukaryotic translation 99.8 1.4E-18 4.9E-23 129.4 10.7 85 191-278 12-96 (103)
128 2kxn_B Transformer-2 protein h 99.8 1E-18 3.4E-23 135.7 10.1 85 191-276 43-127 (129)
129 1p1t_A Cleavage stimulation fa 99.8 3.1E-19 1.1E-23 133.2 6.9 86 193-279 7-92 (104)
130 1x4d_A Matrin 3; structural ge 99.8 9.7E-19 3.3E-23 129.6 9.3 79 99-182 14-95 (102)
131 1wi8_A EIF-4B, eukaryotic tran 99.8 1.8E-18 6.3E-23 129.1 10.9 84 98-183 13-98 (104)
132 1x4a_A Splicing factor, argini 99.8 4.3E-18 1.5E-22 128.2 13.0 84 97-182 19-102 (109)
133 2cpe_A RNA-binding protein EWS 99.8 1.2E-18 4.1E-23 132.1 9.9 89 190-279 11-107 (113)
134 2cq4_A RNA binding motif prote 99.8 5.9E-19 2E-23 134.0 8.2 82 98-180 23-105 (114)
135 2dh8_A DAZ-associated protein 99.8 1.5E-18 5.2E-23 129.7 10.3 87 96-183 12-99 (105)
136 2cpe_A RNA-binding protein EWS 99.8 1.3E-18 4.3E-23 131.9 10.0 87 96-182 11-106 (113)
137 2wbr_A GW182, gawky, LD47780P; 99.8 1.1E-18 3.8E-23 123.9 8.9 73 100-177 7-79 (89)
138 2rs2_A Musashi-1, RNA-binding 99.8 1.4E-18 4.7E-23 131.0 10.0 85 96-181 21-106 (109)
139 2cq1_A PTB-like protein L; RRM 99.8 2.8E-18 9.7E-23 127.1 11.5 80 98-182 13-94 (101)
140 2ywk_A Putative RNA-binding pr 99.8 1.9E-18 6.7E-23 126.7 10.5 82 191-274 13-94 (95)
141 3ucg_A Polyadenylate-binding p 99.8 1.9E-18 6.7E-23 125.1 10.0 80 194-275 6-85 (89)
142 2cq4_A RNA binding motif prote 99.8 7.9E-19 2.7E-23 133.3 8.2 85 193-279 24-108 (114)
143 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.9E-18 1.7E-22 126.5 12.3 85 191-278 12-96 (103)
144 2cpi_A CCR4-NOT transcription 99.8 1.7E-18 5.7E-23 130.9 9.9 86 96-181 11-103 (111)
145 2kt5_A RNA and export factor-b 99.8 2.9E-18 9.8E-23 132.2 11.4 85 98-182 33-117 (124)
146 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.4E-19 1.5E-23 131.6 6.4 81 98-180 17-99 (100)
147 2khc_A Testis-specific RNP-typ 99.8 1.4E-18 4.6E-23 132.8 9.4 82 191-273 37-118 (118)
148 2db1_A Heterogeneous nuclear r 99.8 1E-18 3.6E-23 133.5 8.6 82 97-179 14-98 (118)
149 2m2b_A RNA-binding protein 10; 99.8 5.3E-19 1.8E-23 137.7 7.1 85 97-182 20-111 (131)
150 4a8x_A RNA-binding protein wit 99.8 1.2E-18 3.9E-23 125.9 8.3 82 194-276 4-86 (88)
151 2dh8_A DAZ-associated protein 99.8 2.1E-18 7.2E-23 129.0 9.9 88 190-279 12-99 (105)
152 2cqd_A RNA-binding region cont 99.8 2E-18 7E-23 131.5 9.9 88 190-279 13-100 (116)
153 2nlw_A Eukaryotic translation 99.8 1.4E-18 4.9E-23 130.0 8.7 81 98-179 13-100 (105)
154 2cqp_A RNA-binding protein 12; 99.8 1.3E-18 4.5E-23 128.4 8.4 81 99-179 14-95 (98)
155 2cpy_A RNA-binding protein 12; 99.8 9.2E-19 3.2E-23 133.0 7.7 84 96-180 11-95 (114)
156 1sjq_A Polypyrimidine tract-bi 99.8 1.8E-18 6.1E-23 128.4 9.0 81 192-279 14-96 (105)
157 2cq3_A RNA-binding protein 9; 99.8 6.1E-18 2.1E-22 126.0 12.0 86 191-279 12-97 (103)
158 1p1t_A Cleavage stimulation fa 99.8 1.3E-18 4.5E-23 129.8 8.4 82 99-180 7-89 (104)
159 2dgx_A KIAA0430 protein; RRM d 99.8 3.5E-18 1.2E-22 125.7 10.5 81 193-277 8-92 (96)
160 3ex7_B RNA-binding protein 8A; 99.8 1.8E-18 6.2E-23 133.7 9.4 88 191-279 19-106 (126)
161 2ad9_A Polypyrimidine tract-bi 99.8 2.8E-18 9.7E-23 130.4 10.1 80 99-183 30-111 (119)
162 3ulh_A THO complex subunit 4; 99.8 4.1E-18 1.4E-22 127.8 11.0 80 192-273 27-106 (107)
163 2cqg_A TDP-43, TAR DNA-binding 99.8 7.9E-18 2.7E-22 125.4 12.4 85 96-182 11-96 (103)
164 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-18 8.3E-23 128.4 9.6 84 192-278 13-97 (104)
165 1x4b_A Heterogeneous nuclear r 99.8 2.3E-18 8E-23 131.1 9.6 85 98-183 25-110 (116)
166 2mss_A Protein (musashi1); RNA 99.8 8.3E-19 2.8E-23 122.9 6.5 74 102-176 1-75 (75)
167 1wg5_A Heterogeneous nuclear r 99.8 3.9E-18 1.3E-22 127.4 10.5 83 98-181 13-96 (104)
168 3ex7_B RNA-binding protein 8A; 99.8 3.1E-18 1E-22 132.4 9.9 85 98-182 20-105 (126)
169 2wbr_A GW182, gawky, LD47780P; 99.8 3.5E-18 1.2E-22 121.3 9.3 74 194-274 7-80 (89)
170 1wex_A Hypothetical protein (r 99.8 6E-18 2.1E-22 126.1 11.1 79 99-182 14-94 (104)
171 2cqp_A RNA-binding protein 12; 99.8 1.7E-18 5.6E-23 127.8 8.0 83 192-275 13-95 (98)
172 2fc9_A NCL protein; structure 99.8 4.4E-18 1.5E-22 126.3 10.3 83 97-182 12-94 (101)
173 3s7r_A Heterogeneous nuclear r 99.8 4.5E-18 1.5E-22 122.7 10.0 79 192-272 9-87 (87)
174 1x4e_A RNA binding motif, sing 99.8 7.5E-19 2.5E-23 126.2 5.7 79 99-177 4-83 (85)
175 1x5o_A RNA binding motif, sing 99.8 5.1E-18 1.7E-22 128.8 10.4 83 97-179 22-112 (114)
176 2dgv_A HnRNP M, heterogeneous 99.8 4.2E-18 1.4E-22 124.1 9.6 83 192-277 6-88 (92)
177 3pgw_S U1-70K; protein-RNA com 99.8 2.4E-19 8.1E-24 166.6 3.6 85 192-277 100-184 (437)
178 2do0_A HnRNP M, heterogeneous 99.8 9.3E-18 3.2E-22 127.3 11.8 84 192-277 13-96 (114)
179 2ek1_A RNA-binding protein 12; 99.8 1.5E-18 5.3E-23 127.2 7.2 79 100-178 15-94 (95)
180 2hgl_A HNRPF protein, heteroge 99.8 1.5E-18 5.2E-23 135.5 7.6 82 97-179 41-125 (136)
181 1h2v_Z 20 kDa nuclear CAP bind 99.8 9.1E-18 3.1E-22 134.6 12.3 84 98-181 37-121 (156)
182 1x4e_A RNA binding motif, sing 99.7 6.1E-19 2.1E-23 126.7 4.8 81 193-274 4-84 (85)
183 2mss_A Protein (musashi1); RNA 99.7 1.3E-18 4.4E-23 121.9 6.3 75 196-272 1-75 (75)
184 2dis_A Unnamed protein product 99.7 5.4E-18 1.8E-22 127.6 10.2 85 193-278 7-95 (109)
185 2ek1_A RNA-binding protein 12; 99.7 1.5E-18 5.2E-23 127.2 7.0 81 193-274 14-94 (95)
186 2dis_A Unnamed protein product 99.7 6.4E-18 2.2E-22 127.2 10.6 84 99-182 7-95 (109)
187 1wez_A HnRNP H', FTP-3, hetero 99.7 2.9E-18 9.8E-23 127.6 8.5 82 98-181 13-94 (102)
188 2m2b_A RNA-binding protein 10; 99.7 1.1E-18 3.7E-23 135.9 6.5 85 191-277 20-110 (131)
189 2jwn_A Embryonic polyadenylate 99.7 3E-18 1E-22 132.1 8.9 84 97-181 33-117 (124)
190 2jwn_A Embryonic polyadenylate 99.7 3.8E-18 1.3E-22 131.5 9.3 82 194-277 36-117 (124)
191 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.3E-18 2.5E-22 132.6 11.1 81 96-176 59-140 (140)
192 2kt5_A RNA and export factor-b 99.7 6.8E-18 2.3E-22 130.1 10.6 86 191-278 32-117 (124)
193 2dnq_A RNA-binding protein 4B; 99.7 9.7E-18 3.3E-22 121.7 10.7 79 98-183 6-84 (90)
194 2rs2_A Musashi-1, RNA-binding 99.7 4.2E-18 1.4E-22 128.3 8.9 84 192-277 23-106 (109)
195 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.2E-18 3.1E-22 134.6 11.3 85 192-277 37-121 (156)
196 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-18 5.1E-23 122.1 5.9 75 101-176 1-76 (77)
197 1x4a_A Splicing factor, argini 99.7 1.3E-17 4.4E-22 125.5 11.5 85 191-279 19-103 (109)
198 2a3j_A U1 small nuclear ribonu 99.7 5.8E-18 2E-22 130.7 9.7 79 100-180 29-111 (127)
199 2ki2_A SS-DNA binding protein 99.7 6.9E-19 2.4E-23 127.8 4.2 81 101-182 2-83 (90)
200 2kn4_A Immunoglobulin G-bindin 99.7 8.6E-18 2.9E-22 135.0 11.1 85 98-182 68-153 (158)
201 2ytc_A PRE-mRNA-splicing facto 99.7 8.5E-18 2.9E-22 120.6 10.0 76 97-177 9-85 (85)
202 2cpj_A Non-POU domain-containi 99.7 7.1E-18 2.4E-22 124.7 9.8 81 97-182 12-92 (99)
203 2krb_A Eukaryotic translation 99.7 1.7E-18 5.9E-23 123.2 6.2 73 101-174 2-81 (81)
204 2dnp_A RNA-binding protein 14; 99.7 1.2E-17 4.2E-22 121.2 10.8 79 97-182 6-84 (90)
205 2jvo_A Nucleolar protein 3; nu 99.7 6.5E-18 2.2E-22 127.0 9.6 79 96-181 27-105 (108)
206 2la4_A Nuclear and cytoplasmic 99.7 4.3E-18 1.5E-22 126.3 8.5 76 98-178 25-100 (101)
207 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.8E-19 3E-23 129.9 4.6 82 192-276 17-99 (100)
208 2dgt_A RNA-binding protein 30; 99.7 1.4E-17 4.6E-22 121.5 10.8 79 97-182 7-85 (92)
209 2ki2_A SS-DNA binding protein 99.7 9.7E-19 3.3E-23 127.0 4.6 82 195-278 2-83 (90)
210 1why_A Hypothetical protein ri 99.7 1.2E-17 4.1E-22 123.0 10.5 77 99-180 16-94 (97)
211 1x4g_A Nucleolysin TIAR; struc 99.7 1.5E-17 5E-22 125.2 11.1 82 96-182 21-102 (109)
212 2dgw_A Probable RNA-binding pr 99.7 9.4E-18 3.2E-22 122.1 9.7 81 192-276 8-88 (91)
213 2cqg_A TDP-43, TAR DNA-binding 99.7 2.4E-17 8.2E-22 122.7 12.1 85 191-278 12-96 (103)
214 2dnn_A RNA-binding protein 12; 99.7 3.7E-18 1.3E-22 128.3 7.7 78 100-179 16-93 (109)
215 3r27_A HnRNP L, heterogeneous 99.7 9E-18 3.1E-22 123.3 9.5 77 192-275 19-97 (100)
216 2e5j_A Methenyltetrahydrofolat 99.7 9.6E-18 3.3E-22 123.5 9.8 79 98-180 17-95 (97)
217 1x4b_A Heterogeneous nuclear r 99.7 4.5E-18 1.5E-22 129.5 8.1 85 193-279 26-110 (116)
218 2xnq_A Nuclear polyadenylated 99.7 1.6E-17 5.6E-22 122.3 10.7 75 98-179 20-95 (97)
219 2cpd_A Apobec-1 stimulating pr 99.7 2.8E-17 9.5E-22 121.5 12.0 79 97-182 12-92 (99)
220 1x4f_A Matrin 3; structural ge 99.7 7.2E-18 2.5E-22 126.8 8.6 80 98-182 23-105 (112)
221 2cpi_A CCR4-NOT transcription 99.7 7E-18 2.4E-22 127.5 8.6 85 191-276 12-102 (111)
222 2jvr_A Nucleolar protein 3; RN 99.7 6.3E-18 2.2E-22 127.3 8.3 78 99-179 27-105 (111)
223 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-18 4.9E-23 130.4 4.7 82 97-179 8-92 (107)
224 2cpy_A RNA-binding protein 12; 99.7 5E-18 1.7E-22 128.9 7.5 85 192-279 13-98 (114)
225 1x4c_A Splicing factor, argini 99.7 2.6E-17 8.8E-22 123.7 11.4 78 99-182 14-96 (108)
226 2lea_A Serine/arginine-rich sp 99.7 3.3E-18 1.1E-22 133.9 6.6 86 97-182 44-130 (135)
227 1wel_A RNA-binding protein 12; 99.7 4E-18 1.4E-22 131.4 7.1 81 98-179 23-104 (124)
228 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.8E-17 6.3E-22 130.2 11.0 81 191-272 60-140 (140)
229 1x5o_A RNA binding motif, sing 99.7 2.2E-17 7.5E-22 125.3 10.9 83 191-275 22-112 (114)
230 2a3j_A U1 small nuclear ribonu 99.7 1.4E-17 4.9E-22 128.5 9.9 84 192-279 27-114 (127)
231 1x4d_A Matrin 3; structural ge 99.7 8.8E-18 3E-22 124.4 8.3 80 192-278 13-95 (102)
232 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.1E-18 1.1E-22 120.5 5.5 76 195-272 1-76 (77)
233 2err_A Ataxin-2-binding protei 99.7 1.2E-17 4E-22 125.8 9.0 82 191-275 26-107 (109)
234 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.2E-17 7.7E-22 133.6 11.2 85 98-182 70-155 (165)
235 1nu4_A U1A RNA binding domain; 99.7 5.9E-18 2E-22 124.6 7.0 81 98-180 6-90 (97)
236 2nlw_A Eukaryotic translation 99.7 1E-17 3.5E-22 125.3 8.4 82 193-277 14-102 (105)
237 1whx_A Hypothetical protein ri 99.7 1.3E-17 4.5E-22 126.0 9.0 77 99-180 9-85 (111)
238 2cq1_A PTB-like protein L; RRM 99.7 2.6E-17 9E-22 121.9 10.4 80 191-277 12-93 (101)
239 2dgu_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 122.2 10.7 78 99-183 10-87 (103)
240 1iqt_A AUF1, heterogeneous nuc 99.7 3.7E-18 1.3E-22 119.5 5.3 74 102-176 1-75 (75)
241 1fj7_A Nucleolin RBD1, protein 99.7 1.8E-18 6.3E-23 128.3 3.7 84 192-278 15-98 (101)
242 2xs2_A Deleted in azoospermia- 99.7 7.4E-18 2.5E-22 125.3 6.9 82 99-182 8-89 (102)
243 1wex_A Hypothetical protein (r 99.7 1.9E-17 6.3E-22 123.4 8.9 80 192-278 13-94 (104)
244 2fc8_A NCL protein; structure 99.7 3.8E-17 1.3E-21 121.4 10.6 83 97-182 12-95 (102)
245 2dha_A FLJ20171 protein; RRM d 99.7 6.9E-18 2.4E-22 129.5 6.7 81 98-179 21-105 (123)
246 1fjc_A Nucleolin RBD2, protein 99.7 9.3E-18 3.2E-22 123.3 7.2 81 97-181 13-93 (96)
247 3q2s_C Cleavage and polyadenyl 99.7 1.1E-17 3.6E-22 142.6 8.6 81 99-179 67-150 (229)
248 2ad9_A Polypyrimidine tract-bi 99.7 1.9E-17 6.5E-22 125.8 9.0 80 192-278 29-110 (119)
249 2dnq_A RNA-binding protein 4B; 99.7 3.6E-17 1.2E-21 118.7 10.1 79 192-279 6-84 (90)
250 2fc9_A NCL protein; structure 99.7 2E-17 6.9E-22 122.7 8.8 82 191-277 12-93 (101)
251 2cpx_A Hypothetical protein FL 99.7 6.9E-18 2.4E-22 128.2 6.3 87 192-279 23-109 (115)
252 2fc8_A NCL protein; structure 99.7 2.9E-17 1E-21 122.0 9.6 84 191-278 12-95 (102)
253 2cpx_A Hypothetical protein FL 99.7 2.8E-17 9.5E-22 124.9 9.5 82 99-183 24-109 (115)
254 3lqv_A PRE-mRNA branch site pr 99.7 4.2E-17 1.4E-21 123.9 10.3 82 193-278 7-88 (115)
255 2db1_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 127.4 7.4 82 192-276 15-99 (118)
256 1fj7_A Nucleolin RBD1, protein 99.7 2.6E-18 8.9E-23 127.5 3.4 82 99-182 16-98 (101)
257 2hgl_A HNRPF protein, heteroge 99.7 1.2E-17 4E-22 130.5 7.2 83 192-277 42-127 (136)
258 2hgm_A HNRPF protein, heteroge 99.7 1.3E-17 4.4E-22 128.3 7.1 80 98-179 40-121 (126)
259 1x4g_A Nucleolysin TIAR; struc 99.7 4.6E-17 1.6E-21 122.5 9.9 80 193-279 24-103 (109)
260 3q2s_C Cleavage and polyadenyl 99.7 1.6E-17 5.3E-22 141.6 8.2 82 194-276 68-151 (229)
261 2kvi_A Nuclear polyadenylated 99.7 2.6E-17 8.7E-22 121.0 8.2 78 98-182 8-86 (96)
262 1wel_A RNA-binding protein 12; 99.7 8E-18 2.7E-22 129.7 5.6 83 192-276 23-105 (124)
263 1iqt_A AUF1, heterogeneous nuc 99.7 7.5E-18 2.6E-22 117.9 4.9 75 196-272 1-75 (75)
264 1nu4_A U1A RNA binding domain; 99.7 1.3E-17 4.4E-22 122.7 6.4 84 192-279 6-93 (97)
265 1wg5_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 122.4 8.5 81 192-275 13-94 (104)
266 3zzy_A Polypyrimidine tract-bi 99.7 5.8E-17 2E-21 124.7 10.2 98 194-297 28-129 (130)
267 2cqh_A IGF-II mRNA-binding pro 99.7 4.5E-17 1.5E-21 118.9 9.2 78 99-182 7-86 (93)
268 1wez_A HnRNP H', FTP-3, hetero 99.7 1.5E-17 5E-22 123.7 6.6 83 191-277 12-94 (102)
269 2jvr_A Nucleolar protein 3; RN 99.7 2.9E-17 1E-21 123.7 8.3 78 194-276 28-106 (111)
270 1x4c_A Splicing factor, argini 99.7 7.8E-17 2.7E-21 121.1 10.7 78 193-278 14-96 (108)
271 2la4_A Nuclear and cytoplasmic 99.7 4E-17 1.4E-21 121.1 8.9 76 193-275 26-101 (101)
272 2e5j_A Methenyltetrahydrofolat 99.7 6.8E-17 2.3E-21 119.0 10.1 79 192-276 17-95 (97)
273 2e5g_A U6 snRNA-specific termi 99.7 1E-16 3.5E-21 117.2 11.0 79 99-182 7-85 (94)
274 1sjr_A Polypyrimidine tract-bi 99.7 6E-17 2E-21 129.3 10.5 102 194-300 46-150 (164)
275 2jvo_A Nucleolar protein 3; nu 99.7 5.1E-17 1.7E-21 122.1 9.5 80 190-278 27-106 (108)
276 1why_A Hypothetical protein ri 99.7 4.3E-17 1.5E-21 120.0 8.9 79 192-277 15-95 (97)
277 2krb_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 118.8 5.7 73 195-270 2-81 (81)
278 2hvz_A Splicing factor, argini 99.7 2.7E-17 9.1E-22 122.0 7.8 79 195-279 1-79 (101)
279 2xnq_A Nuclear polyadenylated 99.7 8.4E-17 2.9E-21 118.5 10.2 77 191-276 19-96 (97)
280 2ytc_A PRE-mRNA-splicing facto 99.7 9.8E-17 3.4E-21 115.0 10.3 76 191-273 9-85 (85)
281 2dgt_A RNA-binding protein 30; 99.7 8.9E-17 3.1E-21 117.1 10.0 80 191-279 7-86 (92)
282 2dnn_A RNA-binding protein 12; 99.7 5.9E-17 2E-21 121.7 9.2 80 193-276 15-94 (109)
283 2i2y_A Fusion protein consists 99.7 5.7E-17 2E-21 129.1 9.6 80 97-180 70-149 (150)
284 2hgn_A Heterogeneous nuclear r 99.7 7.2E-18 2.5E-22 132.1 4.2 83 97-181 43-125 (139)
285 2dgu_A Heterogeneous nuclear r 99.7 1.5E-16 5.2E-21 118.4 11.3 79 192-279 9-87 (103)
286 1wf1_A RNA-binding protein RAL 99.7 8.5E-17 2.9E-21 121.2 10.0 76 99-181 26-102 (110)
287 2lcw_A RNA-binding protein FUS 99.5 1.3E-18 4.6E-23 132.5 0.0 86 193-279 6-99 (116)
288 2lmi_A GRSF-1, G-rich sequence 99.7 1E-17 3.6E-22 125.7 4.8 83 191-276 8-93 (107)
289 1fjc_A Nucleolin RBD2, protein 99.7 2.3E-17 7.7E-22 121.2 6.4 82 191-278 13-94 (96)
290 2f3j_A RNA and export factor b 99.7 5.4E-17 1.9E-21 132.7 9.3 84 98-181 86-169 (177)
291 2dnp_A RNA-binding protein 14; 99.7 1.1E-16 3.9E-21 116.0 9.9 77 192-277 7-83 (90)
292 1wf1_A RNA-binding protein RAL 99.7 5E-17 1.7E-21 122.5 8.2 96 167-277 6-102 (110)
293 2cq2_A Hypothetical protein LO 99.7 6.9E-17 2.4E-21 121.5 8.9 78 99-181 24-108 (114)
294 2lcw_A RNA-binding protein FUS 99.5 1.7E-18 5.7E-23 131.9 0.0 85 98-182 5-98 (116)
295 1whx_A Hypothetical protein ri 99.7 3.8E-17 1.3E-21 123.4 7.4 77 194-277 10-86 (111)
296 1x5p_A Negative elongation fac 99.7 2.4E-16 8.1E-21 116.0 11.5 79 97-182 12-90 (97)
297 3zzy_A Polypyrimidine tract-bi 99.7 1.7E-16 5.9E-21 122.1 10.9 77 100-180 28-107 (130)
298 2cpj_A Non-POU domain-containi 99.7 9.2E-17 3.2E-21 118.7 9.0 80 191-277 12-91 (99)
299 1wg1_A KIAA1579 protein, homol 99.7 7.2E-17 2.5E-21 116.6 7.9 75 99-179 4-78 (88)
300 4f02_A Polyadenylate-binding p 99.7 1.5E-16 5E-21 134.2 11.0 85 193-278 14-98 (213)
301 2j8a_A Histone-lysine N-methyl 99.7 5.8E-17 2E-21 122.7 7.4 82 195-277 3-98 (136)
302 1sjr_A Polypyrimidine tract-bi 99.7 1.6E-16 5.4E-21 126.9 10.3 78 100-180 46-125 (164)
303 2hgn_A Heterogeneous nuclear r 99.7 1.2E-17 4E-22 130.9 3.4 124 142-277 2-125 (139)
304 2xs2_A Deleted in azoospermia- 99.7 4.1E-17 1.4E-21 121.2 6.3 82 193-278 8-89 (102)
305 2kvi_A Nuclear polyadenylated 99.7 7.3E-17 2.5E-21 118.5 7.4 79 192-279 8-87 (96)
306 1x4f_A Matrin 3; structural ge 99.7 4.1E-17 1.4E-21 122.6 6.0 82 191-279 22-106 (112)
307 3egn_A RNA-binding protein 40; 99.7 5.8E-17 2E-21 128.0 7.1 84 98-181 43-132 (143)
308 2cqh_A IGF-II mRNA-binding pro 99.7 1E-16 3.5E-21 117.0 7.8 79 193-279 7-87 (93)
309 2cq2_A Hypothetical protein LO 99.7 1.1E-16 3.9E-21 120.3 8.2 83 192-281 23-112 (114)
310 1fxl_A Paraneoplastic encephal 99.7 3.3E-16 1.1E-20 126.1 11.3 83 194-277 2-84 (167)
311 2j8a_A Histone-lysine N-methyl 99.7 1.1E-16 3.7E-21 121.2 7.7 78 101-178 3-95 (136)
312 3md3_A Nuclear and cytoplasmic 99.7 3.9E-16 1.3E-20 125.5 11.6 80 98-177 85-165 (166)
313 2e5i_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 119.7 10.6 75 101-180 26-103 (124)
314 2e44_A Insulin-like growth fac 99.7 2.4E-16 8.1E-21 115.7 9.1 78 99-179 14-92 (96)
315 2e44_A Insulin-like growth fac 99.7 2.1E-16 7.3E-21 115.9 8.7 78 193-275 14-92 (96)
316 3egn_A RNA-binding protein 40; 99.7 3.7E-17 1.3E-21 129.2 4.8 85 192-277 43-132 (143)
317 2diu_A KIAA0430 protein; struc 99.7 4.3E-16 1.5E-20 111.6 9.8 73 102-183 11-88 (96)
318 2diu_A KIAA0430 protein; struc 99.7 2.5E-16 8.7E-21 112.8 8.6 74 194-277 8-86 (96)
319 1x5p_A Negative elongation fac 99.7 6.1E-16 2.1E-20 113.8 10.9 80 191-279 12-91 (97)
320 1b7f_A Protein (SXL-lethal pro 99.7 2.3E-16 7.8E-21 127.4 9.4 84 193-277 2-85 (168)
321 2f3j_A RNA and export factor b 99.7 2.1E-16 7.2E-21 129.2 9.2 84 192-277 86-169 (177)
322 2cpd_A Apobec-1 stimulating pr 99.7 8.7E-16 3E-20 113.4 11.7 78 192-277 13-91 (99)
323 2dha_A FLJ20171 protein; RRM d 99.7 7.4E-17 2.5E-21 123.7 6.0 80 194-276 23-106 (123)
324 2qfj_A FBP-interacting repress 99.7 5.4E-16 1.8E-20 130.4 11.8 87 97-183 122-209 (216)
325 2e5g_A U6 snRNA-specific termi 99.7 3.8E-16 1.3E-20 114.2 9.4 79 194-279 8-86 (94)
326 2hzc_A Splicing factor U2AF 65 99.7 3.1E-16 1.1E-20 112.8 8.6 71 99-175 5-86 (87)
327 3d2w_A TAR DNA-binding protein 99.7 4.1E-16 1.4E-20 112.9 9.1 77 97-181 8-86 (89)
328 2pe8_A Splicing factor 45; RRM 99.7 9.8E-16 3.3E-20 114.2 11.0 83 192-275 6-94 (105)
329 2g4b_A Splicing factor U2AF 65 99.6 6.2E-16 2.1E-20 125.4 10.6 79 99-177 93-172 (172)
330 2e5i_A Heterogeneous nuclear r 99.6 8.7E-16 3E-20 117.6 10.2 92 195-293 26-121 (124)
331 3nmr_A Cugbp ELAV-like family 99.6 8.1E-16 2.8E-20 124.9 10.7 79 99-177 94-175 (175)
332 3beg_B Splicing factor, argini 99.6 3.2E-16 1.1E-20 119.1 7.7 75 99-179 15-94 (115)
333 3pgw_S U1-70K; protein-RNA com 99.6 7.4E-16 2.5E-20 143.1 11.3 84 98-181 100-184 (437)
334 2yh0_A Splicing factor U2AF 65 99.6 9.5E-16 3.3E-20 127.1 10.9 84 98-181 112-196 (198)
335 1l3k_A Heterogeneous nuclear r 99.6 1.4E-15 4.6E-20 126.0 11.2 85 191-277 10-94 (196)
336 2hgm_A HNRPF protein, heteroge 99.6 2.3E-16 8E-21 121.3 5.9 79 193-275 41-121 (126)
337 2voo_A Lupus LA protein; RNA-b 99.6 1.3E-15 4.4E-20 126.3 10.6 81 98-179 107-187 (193)
338 2dnl_A Cytoplasmic polyadenyla 99.6 1.4E-15 4.6E-20 115.4 9.8 77 98-177 6-86 (114)
339 2cjk_A Nuclear polyadenylated 99.6 3.7E-16 1.3E-20 126.1 7.1 80 99-179 86-166 (167)
340 1wf0_A TDP-43, TAR DNA-binding 99.6 3.8E-16 1.3E-20 112.7 6.1 78 99-182 4-81 (88)
341 2voo_A Lupus LA protein; RNA-b 99.6 5.8E-16 2E-20 128.4 8.0 123 150-278 63-190 (193)
342 1wg1_A KIAA1579 protein, homol 99.6 6.8E-16 2.3E-20 111.4 7.2 75 194-276 5-79 (88)
343 2pe8_A Splicing factor 45; RRM 99.6 3.9E-15 1.3E-19 111.0 11.0 82 98-179 6-94 (105)
344 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 5E-20 110.0 8.2 76 192-277 9-86 (89)
345 2bz2_A Negative elongation fac 99.6 1.4E-15 4.7E-20 116.5 8.5 79 192-279 37-115 (121)
346 2bz2_A Negative elongation fac 99.6 1.7E-15 5.7E-20 116.1 8.3 77 98-181 37-113 (121)
347 3beg_B Splicing factor, argini 99.6 1.2E-15 4E-20 115.9 6.8 76 194-277 16-96 (115)
348 1fje_B Nucleolin RBD12, protei 99.6 3E-15 1E-19 121.8 9.0 77 99-179 98-174 (175)
349 3tyt_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 124.8 9.2 78 193-276 3-81 (205)
350 3u1l_A PRE-mRNA-splicing facto 99.6 2.9E-15 1E-19 127.3 8.2 79 97-180 131-230 (240)
351 2dnl_A Cytoplasmic polyadenyla 99.6 3.3E-15 1.1E-19 113.2 7.3 78 193-274 7-87 (114)
352 2hzc_A Splicing factor U2AF 65 99.6 6E-15 2.1E-19 106.0 8.1 72 193-271 5-86 (87)
353 3v4m_A Splicing factor U2AF 65 99.6 1.3E-14 4.3E-19 108.2 9.3 84 192-276 3-98 (105)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 2.5E-15 8.4E-20 108.4 4.5 78 193-278 4-81 (88)
355 1jmt_A Splicing factor U2AF 35 99.5 2.6E-15 8.9E-20 111.8 4.2 72 105-176 20-103 (104)
356 2adc_A Polypyrimidine tract-bi 99.5 2E-14 6.8E-19 122.4 10.3 79 192-276 32-111 (229)
357 1jmt_A Splicing factor U2AF 35 99.5 1E-14 3.6E-19 108.5 7.4 72 199-272 20-103 (104)
358 2dit_A HIV TAT specific factor 99.5 4.3E-14 1.5E-18 106.7 10.8 85 190-279 11-106 (112)
359 3pgw_A U1-A; protein-RNA compl 99.5 1.9E-14 6.6E-19 126.1 10.3 83 191-277 6-92 (282)
360 2dit_A HIV TAT specific factor 99.5 6.9E-14 2.3E-18 105.6 11.3 82 97-181 12-104 (112)
361 3u1l_A PRE-mRNA-splicing facto 99.5 2.7E-14 9.4E-19 121.3 10.0 80 191-277 131-231 (240)
362 3ue2_A Poly(U)-binding-splicin 99.5 5.2E-14 1.8E-18 106.9 8.7 81 193-274 19-108 (118)
363 1qm9_A Polypyrimidine tract-bi 99.5 2.3E-14 7.7E-19 119.0 7.1 78 194-277 3-81 (198)
364 3sde_A Paraspeckle component 1 99.5 1.2E-13 4.1E-18 119.9 10.8 83 99-181 95-181 (261)
365 3v4m_A Splicing factor U2AF 65 99.5 8.3E-14 2.8E-18 103.7 8.4 81 99-179 4-97 (105)
366 3ue2_A Poly(U)-binding-splicin 99.4 3.1E-13 1.1E-17 102.7 8.7 80 99-178 19-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.4E-12 4.7E-17 96.0 10.3 67 110-182 27-93 (100)
368 3s6e_A RNA-binding protein 39; 99.4 9.5E-13 3.2E-17 99.3 8.9 80 192-276 5-94 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.3E-12 7.8E-17 94.8 9.7 66 204-277 27-92 (100)
370 3tht_A Alkylated DNA repair pr 99.4 9.2E-13 3.2E-17 117.7 8.3 75 98-177 16-97 (345)
371 3s6e_A RNA-binding protein 39; 99.3 6E-12 2.1E-16 94.8 9.2 79 98-179 5-93 (114)
372 3tht_A Alkylated DNA repair pr 99.3 3.8E-12 1.3E-16 113.7 9.2 78 190-274 14-98 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 1.6E-10 5.4E-15 82.0 7.7 74 191-274 4-85 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 1.7E-10 5.9E-15 87.1 8.1 74 99-177 17-94 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.1 2.8E-10 9.7E-15 80.7 7.6 72 100-179 7-86 (91)
376 1owx_A Lupus LA protein, SS-B, 99.0 3.2E-10 1.1E-14 85.7 6.6 76 192-274 16-95 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 8.6E-10 2.9E-14 78.6 7.4 75 189-273 10-93 (95)
378 3dxb_A Thioredoxin N-terminall 99.0 1.3E-09 4.5E-14 91.9 8.3 69 206-275 141-213 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 2.8E-09 9.5E-14 75.9 6.7 70 100-177 15-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.9 3.1E-09 1.1E-13 89.6 7.8 67 112-178 141-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.7 8.5E-08 2.9E-12 69.6 8.7 73 98-175 19-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.6 2.1E-07 7.2E-12 67.6 9.2 78 194-277 21-102 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.2 1.3E-05 4.3E-10 57.8 9.4 87 100-207 8-99 (104)
384 1wey_A Calcipressin 1; structu 98.1 1.5E-05 5.2E-10 57.6 8.0 75 100-179 5-84 (104)
385 1wey_A Calcipressin 1; structu 97.7 0.00016 5.3E-09 52.3 7.4 74 194-274 5-83 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.6 0.00031 1E-08 50.6 8.5 73 194-275 8-84 (104)
387 1uw4_A UPF3X; nonsense mediate 97.5 0.00054 1.8E-08 48.6 8.4 69 195-264 2-72 (91)
388 1uw4_A UPF3X; nonsense mediate 97.4 0.00078 2.7E-08 47.8 8.3 68 101-168 2-72 (91)
389 1whv_A Poly(A)-specific ribonu 97.3 0.00074 2.5E-08 48.0 6.8 54 100-161 16-69 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.3 0.0008 2.8E-08 50.0 7.2 72 99-177 23-95 (119)
391 3ctr_A Poly(A)-specific ribonu 97.1 0.00085 2.9E-08 47.9 5.0 54 101-162 7-60 (101)
392 1wwh_A Nucleoporin 35, nucleop 96.9 0.012 4.1E-07 43.6 10.3 74 194-276 24-98 (119)
393 1whv_A Poly(A)-specific ribonu 96.6 0.0048 1.6E-07 43.8 6.1 55 194-258 16-70 (100)
394 2l08_A Regulator of nonsense t 96.4 0.0031 1.1E-07 45.0 4.3 70 194-264 9-80 (97)
395 3p3d_A Nucleoporin 53; structu 96.3 0.0064 2.2E-07 45.8 5.3 81 194-277 7-101 (132)
396 3ctr_A Poly(A)-specific ribonu 96.2 0.0044 1.5E-07 44.2 3.7 54 195-258 7-60 (101)
397 2l08_A Regulator of nonsense t 96.1 0.0058 2E-07 43.6 4.1 68 101-168 10-80 (97)
398 3pq1_A Poly(A) RNA polymerase; 96.0 0.0038 1.3E-07 57.6 3.4 56 99-159 52-107 (464)
399 3p3d_A Nucleoporin 53; structu 95.8 0.018 6.3E-07 43.3 5.9 75 101-177 8-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 92.4 0.063 2.1E-06 49.5 2.8 55 194-255 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 87.3 1.4 4.7E-05 41.2 7.4 55 100-162 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 77.6 5 0.00017 37.4 7.0 55 195-259 441-495 (507)
403 2g0c_A ATP-dependent RNA helic 59.7 4.3 0.00015 26.9 1.8 60 205-273 12-75 (76)
404 2g0c_A ATP-dependent RNA helic 51.6 21 0.0007 23.4 4.2 59 111-177 12-75 (76)
405 4eyt_A Telomerase associated p 50.8 57 0.002 22.4 8.6 67 100-175 12-78 (129)
406 4eyt_A Telomerase associated p 47.8 65 0.0022 22.1 8.6 72 194-274 12-90 (129)
407 4e8u_A Putative uncharacterize 47.6 39 0.0013 26.4 5.7 55 103-159 15-81 (172)
408 3j21_T 50S ribosomal protein L 45.6 50 0.0017 22.5 5.4 54 200-256 28-82 (86)
409 3lo3_A Uncharacterized conserv 29.4 1E+02 0.0034 21.1 5.0 45 210-255 25-71 (94)
410 3u5e_X 60S ribosomal protein L 26.6 1E+02 0.0035 23.2 4.8 53 201-256 85-138 (142)
411 3ts2_A Protein LIN-28 homolog 26.4 8.6 0.00029 29.4 -1.2 28 115-149 2-29 (148)
412 4a17_R RPL23A, 60S ribosomal p 25.5 1E+02 0.0036 23.3 4.7 52 202-256 94-146 (150)
413 2cu1_A Mitogen-activated prote 25.2 59 0.002 22.8 3.0 64 202-274 24-87 (103)
414 3fut_A Dimethyladenosine trans 25.0 62 0.0021 27.1 3.9 32 101-133 111-142 (271)
415 1ywx_A 30S ribosomal protein S 24.9 1.3E+02 0.0043 21.2 4.8 46 110-156 28-79 (102)
416 1vq8_S 50S ribosomal protein L 24.6 89 0.003 21.2 3.9 53 199-254 26-79 (85)
417 4bby_A Alkyldihydroxyacetoneph 24.3 68 0.0023 30.7 4.4 56 107-162 350-409 (658)
418 2v94_A RPS24, 30S ribosomal pr 24.1 1.3E+02 0.0046 21.3 4.9 46 110-156 37-88 (107)
419 1wvf_A 4-cresol dehydrogenase 21.5 58 0.002 30.1 3.2 44 116-159 217-262 (520)
420 3mfb_A Uncharacterized protein 20.7 1.5E+02 0.0052 22.6 4.9 36 112-147 3-42 (157)
421 1f7u_A Arginyl-tRNA synthetase 20.3 4.1E+02 0.014 25.0 8.9 52 167-231 141-192 (607)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-37 Score=249.73 Aligned_cols=166 Identities=29% Similarity=0.466 Sum_probs=154.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccC
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~ 180 (306)
++|||+|||+++++++|+++|+.||.|.++.++.++.|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 57999999999999999999999999999999999889999999999999999999999899999999999999987654
Q ss_pred CCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc
Q 021890 181 KNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK 260 (306)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~ 260 (306)
.. ...+..+|||+|||..+++++|+++|++| |.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||.
T Consensus 81 ~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 152 (166)
T 3md3_A 81 QS-------SSDDTFNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 152 (166)
T ss_dssp CC-------CCTTCEEEEEESCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CC-------CCCCCceEEECCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Confidence 32 22346889999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred eeCCeeEEEeeCcc
Q 021890 261 LFMGRPLRVAPSRQ 274 (306)
Q Consensus 261 ~i~g~~l~v~~a~~ 274 (306)
.++|+.|+|.||++
T Consensus 153 ~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 153 DLNGRPLRINWAAK 166 (166)
T ss_dssp EETTEECEEEESCC
T ss_pred ccCCcEEEEEecCC
Confidence 99999999999864
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.4e-37 Score=261.27 Aligned_cols=172 Identities=23% Similarity=0.361 Sum_probs=154.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.++|||||||+++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45789999999999999999999999999999999987 69999999999999999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
...... .....+|||+|||+.+++++|+++|.+| |.|..|+|++|. +.++|||||+|.+.++|.+|++.|
T Consensus 94 ~~~~~~-------~~~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 94 RDPSLR-------KSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp CCTHHH-------HHCTTEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccc-------ccccccceECCcccccHHHHHHHHHhhc-CCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 543221 1124689999999999999999999998 999999999986 447999999999999999999999
Q ss_pred CCceeCCeeEEEeeCcchhhhhc
Q 021890 258 QGKLFMGRPLRVAPSRQFARLQT 280 (306)
Q Consensus 258 ~g~~i~g~~l~v~~a~~~~~~~~ 280 (306)
||..|+|+.|+|.||+++..+..
T Consensus 164 ng~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp TTCEETTEECEEEECCCHHHHHH
T ss_pred CCCEECCEEEEEEEcCCCcccch
Confidence 99999999999999998765443
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6e-36 Score=242.98 Aligned_cols=163 Identities=26% Similarity=0.448 Sum_probs=152.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
.++|||+|||+++++++|+++|+.||.|.++.+++++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999988 799999999999999999999999999999999999999986
Q ss_pred cCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 021890 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (306)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~ 258 (306)
.... ....+|+|+|||..+++++|+++|++| |.|..+.++.+..+|.++|||||+|.+.++|.+|++.||
T Consensus 82 ~~~~---------~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 82 SSAS---------IRDANLYVSGLPKTMTQKELEQLFSQY-GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CCGG---------GTTCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred Cccc---------CCCCcEEECCCCCcCCHHHHHHHHHhc-CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 5432 235789999999999999999999998 999999999998889999999999999999999999999
Q ss_pred CceeCCee--EEEeeC
Q 021890 259 GKLFMGRP--LRVAPS 272 (306)
Q Consensus 259 g~~i~g~~--l~v~~a 272 (306)
|..+.|+. |+|.||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999965 999886
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.3e-36 Score=250.57 Aligned_cols=177 Identities=20% Similarity=0.362 Sum_probs=151.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 3456899999999999999999999999999999999987 589999999999999999999995 99999999999999
Q ss_pred ecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
+........+ .......+|||+|||+.+++++|+++|+.| |.|..|.++.+..+|.++|||||+|.+.++|.+|+.
T Consensus 89 ~~~~~~~~~~---~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 89 AVSREDSQRP---GAHLTVKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp CCC--------------CCSEEEEECCTTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ccCccccccc---ccCCCcceEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 8765443221 222345889999999999999999999997 999999999999899999999999999999999998
Q ss_pred HhCCceeCCeeEEEeeCcchhhhh
Q 021890 256 AFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
. +|..|+|+.|.|.|+.++....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp C-SCCEETTEECEEEECC------
T ss_pred h-CCcEECCEEEEEEecCChhHhc
Confidence 6 8999999999999999877654
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.1e-36 Score=243.88 Aligned_cols=164 Identities=25% Similarity=0.376 Sum_probs=153.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.++|||+|||+++++++|+++|+.||.|.++.+++++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999886 68999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
+.... ....+|+|+|||..+++++|+++|++| |.|..+.++++..+|.++|||||+|.+.++|.+|++.|
T Consensus 82 ~~~~~---------~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 82 PGGES---------IKDTNLYVTNLPRTITDDQLDTIFGKY-GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp CCSST---------TTTCEEEEESCCTTCCHHHHHHHHTSS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCccc---------CCCCCEEEeCCCCCCCHHHHHHhhhcC-CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 65432 236789999999999999999999997 99999999999888999999999999999999999999
Q ss_pred CCceeCC--eeEEEeeC
Q 021890 258 QGKLFMG--RPLRVAPS 272 (306)
Q Consensus 258 ~g~~i~g--~~l~v~~a 272 (306)
||..+.| ++|+|.||
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 9999988 99999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2e-35 Score=250.28 Aligned_cols=181 Identities=20% Similarity=0.306 Sum_probs=156.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+|+++++. +|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346889999999999999999999999999999999887 6899999999999999999999999999999999999887
Q ss_pred cccCCCCCCC--CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 021890 177 KIKKKNPFPP--VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (306)
Q Consensus 177 ~~~~~~~~~~--~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al 254 (306)
.......... .........+|||+|||..+++++|+++|++| |.|..|.++++..+|.++|||||+|.+.++|.+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF-GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 6543211000 00011235789999999999999999999997 99999999999889999999999999999999999
Q ss_pred HHhCCceeCCeeEEEeeCcchhhhh
Q 021890 255 SAFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 255 ~~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
+.|||..|+|+.|+|.|++++....
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999999999999998875544
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6.9e-36 Score=243.02 Aligned_cols=164 Identities=19% Similarity=0.427 Sum_probs=150.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.++|||+|||+++++++|+++|+.||.|.++++++++ +|.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35789999999999999999999999999999999986 69999999999999999999998 4678999999999987
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
+.... .+..+|||+|||..+++++|+++|++| |.|.++.++.+..+|.++|||||+|.+.++|.+|++ +
T Consensus 80 ~~~~~---------~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 80 PRDEQ---------DKTGKIFVGGIGPDVRPKEFEEFFSQW-GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp CHHHH---------HHCEEEEEEEECTTCCHHHHHHHHHTT-SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred chhhc---------cCCCeEEECCCCCCCCHHHHHHHHHhC-ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 54322 225789999999999999999999997 999999999998899999999999999999999998 8
Q ss_pred CCceeCCeeEEEeeCcch
Q 021890 258 QGKLFMGRPLRVAPSRQF 275 (306)
Q Consensus 258 ~g~~i~g~~l~v~~a~~~ 275 (306)
+|..++|+.|+|.||+++
T Consensus 149 ~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEECSSSSCEEEEECCCC
T ss_pred CCEEeCCeEEEEeecCCC
Confidence 999999999999999875
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.1e-34 Score=235.78 Aligned_cols=165 Identities=27% Similarity=0.392 Sum_probs=148.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCC---CcceEEEEEeCCHHHHHHHHHHhcCCccc---CeEEE
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKN---RNRGLAFVTMGSPDEATAALNNLESYEFE---GRTLK 172 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~---~~~g~afV~f~~~~~a~~ai~~l~~~~~~---g~~l~ 172 (306)
+.++|||+|||+++++++|+++|+.||.|.+++++++..+ .++|||||+|.+.++|.+|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3578999999999999999999999999999999998854 89999999999999999999999998875 67888
Q ss_pred EeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHH
Q 021890 173 VNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAET 252 (306)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ 252 (306)
+.++...... .....+|||+|||..+++++|+++|++| |.|.++.++++.. |.++|||||+|.+.++|.+
T Consensus 82 ~~~~~~~~~~--------~~~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 82 MKPADSEKNN--------AVEDRKLFIGMISKKCTENDIRVMFSSF-GQIEECRILRGPD-GLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp EEECGGGCCS--------CGGGSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTT-SCEEEEEEEEESSHHHHHH
T ss_pred Eccccccccc--------cCCCCeEEEcCCCCcCCHHHHHHHHHhC-CCEEEEEEEECCC-CCEEEEEEEEECCHHHHHH
Confidence 8887765432 2346889999999999999999999998 9999999999864 8999999999999999999
Q ss_pred HHHHhCCceeC---CeeEEEeeCc
Q 021890 253 AISAFQGKLFM---GRPLRVAPSR 273 (306)
Q Consensus 253 Al~~l~g~~i~---g~~l~v~~a~ 273 (306)
|++.|||..+. |++|+|.||+
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHhcCCcccCCCCCCeEEEecC
Confidence 99999998776 4999999985
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=5.9e-34 Score=232.69 Aligned_cols=158 Identities=24% Similarity=0.401 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQH----G-------TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~----G-------~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 167 (306)
+.++|||+|||+++++++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|.+|+ .|+|..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 35789999999999999999999999 7 777777754 4899999999999999999 79999999
Q ss_pred CeEEEEeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCH
Q 021890 168 GRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSK 247 (306)
Q Consensus 168 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 247 (306)
|+.|.|.++...... ....+|||+|||..+++++|+++|++| |.|..+.++.++.+|.++|||||+|.+.
T Consensus 77 g~~i~v~~~~~~~~~---------~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPL---------PGAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp TEECEEECCSSCCCC---------TTTTCEEEECCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred CceeeecCCcccCCC---------CCCCEEEEEcCCCcCCHHHHHHHHHhc-CCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 999999987654322 226789999999999999999999997 9999999999988899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 248 KVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 248 ~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
++|.+|++.|||..++|+.|+|.||
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999999997
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.1e-33 Score=236.21 Aligned_cols=172 Identities=23% Similarity=0.370 Sum_probs=149.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQH----G-------TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~----G-------~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 167 (306)
..++|||+|||+++++++|+++|+.| | .|.++.+. .++|||||+|.+.++|++|+ .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 35889999999999999999999999 5 56666654 45899999999999999999 69999999
Q ss_pred CeEEEEeeecccCCCCCCC-----------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCC
Q 021890 168 GRTLKVNYAKIKKKNPFPP-----------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRS 236 (306)
Q Consensus 168 g~~l~v~~~~~~~~~~~~~-----------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~ 236 (306)
|+.|.|.++.......... ......+..+|||+|||..+++++|+++|++| |.|..+.+..+..+|.+
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-SCEEEEEEEECTTTCSE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccEEEEeecCCCCCc
Confidence 9999999987653322110 11122456899999999999999999999997 99999999999888999
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 237 AGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 237 ~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.+
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999988654
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.8e-34 Score=236.64 Aligned_cols=166 Identities=21% Similarity=0.289 Sum_probs=145.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....++|||+|||+++++++|+++|+.||.+..+.+....+|.++|||||+|.+.++|.+|++ |+|..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3455789999999999999999999999998766434334468899999999999999999996 999999999999999
Q ss_pred ecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
+..+... ......+|||+|||..+++++|+++|++| |.|..+ ..+|.++|||||+|.+.++|.+|+.
T Consensus 88 ~~~~~~~-------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~-g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 88 PKGRDSK-------KVRAARTLLAKNLSFNITEDELKEVFEDA-LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCCSSCS-------TTGGGGEEEEESCCSSCCHHHHHHHCTTC-SEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred CCCcccc-------ccccCCEEEEeCCCCCCCHHHHHHHHHhc-CeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 9865432 22346899999999999999999999997 887655 5568899999999999999999999
Q ss_pred HhCCceeCCeeEEEeeCcch
Q 021890 256 AFQGKLFMGRPLRVAPSRQF 275 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~ 275 (306)
.|||..|+|+.|+|.||+++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999999875
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=3.6e-33 Score=234.87 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=141.7
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVP-WTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~-~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.++|||+||| +.+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|||..+.|+.|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 35789999999 899999999999999999999998653 7999999999999999999999999999999999987
Q ss_pred ccCCCCCCC----------------------------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCe--eEEEE
Q 021890 178 IKKKNPFPP----------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGWDV--VSAEV 227 (306)
Q Consensus 178 ~~~~~~~~~----------------------------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v--~~v~i 227 (306)
.+...+... ......+..+|||+|||+.+++++|+++|++| |.| .++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~-G~v~~~~v~~ 157 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL-GVKRPTSVKV 157 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH-TCCCCSEEEE
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEE
Confidence 543211000 00012345789999999999999999999998 888 88988
Q ss_pred EecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe----eEEEeeC
Q 021890 228 IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR----PLRVAPS 272 (306)
Q Consensus 228 ~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~----~l~v~~a 272 (306)
+.+. |.++|+|||+|.+.++|.+|+..|||..|.|+ ++.|.||
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8764 55679999999999999999999999999986 5666664
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=7.8e-33 Score=244.31 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=157.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+.+++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999999887 69999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhh-hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEA-RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~-t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~ 256 (306)
+..... ......+|||+|||..+ ++++|+++|+.| |.|.++.++.+. +|.++|+|||+|.+.++|.+|+..
T Consensus 174 ~~~~~~------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~-G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 174 AGQLTP------ALLHSRCLCVDRLPPGFNDVDALCRALSAV-HSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp GGGCCT------TTTSCSEEEEECCCTTCCCHHHHHHHTCSS-SCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCCc------ccCCccEEEEecCCcccCCHHHHHHHhhCC-CCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHH
Confidence 765432 22346889999999995 999999999997 999999999987 689999999999999999999999
Q ss_pred hCCceeCCeeEEEeeCcchhhh
Q 021890 257 FQGKLFMGRPLRVAPSRQFARL 278 (306)
Q Consensus 257 l~g~~i~g~~l~v~~a~~~~~~ 278 (306)
|||..|+|+.|+|.|++++..+
T Consensus 246 l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 246 ADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HTTCEETTEECEEEECCSSSCH
T ss_pred hCCCccCCeEEEEEEecCCCcc
Confidence 9999999999999999887653
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.4e-33 Score=247.59 Aligned_cols=173 Identities=23% Similarity=0.282 Sum_probs=147.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHG-TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+.+++++|+++|+.|| .|.++.++.+..|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999988888899999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChh-hhHHHHHHHHHhcCCCeeEEEEEecCC-CCCCccEEEEEeCCHHHHHHHHH
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVIFHDN-PRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~t~~~l~~~F~~~~G~v~~v~i~~~~~-tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
+....... .....+..+|||+|||.. +++++|+++|..| |.|..|.++.+.. ||.++|||||+|.+.++|.+|+
T Consensus 196 ~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 196 PLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGF-GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGG-SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhcc-CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 76543321 122334689999999999 9999999999998 9999999998876 6999999999999999999999
Q ss_pred HhCCceeCCeeEEEeeCcch
Q 021890 256 AFQGKLFMGRPLRVAPSRQF 275 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~ 275 (306)
.|||..|+|+.|+|.||+++
T Consensus 272 ~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGTTEEETTEEEEEEECCCC
T ss_pred HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999875
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=2.2e-32 Score=241.16 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=146.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIR----ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~----~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
....++|||+|||+++++++|+ ++|+.||.|.+|++.+ +|+++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3456899999999999999976 8999999999998875 678899999999999999999999999999999999
Q ss_pred EeeecccCCCCCC-------------------------------------------------------------------
Q 021890 173 VNYAKIKKKNPFP------------------------------------------------------------------- 185 (306)
Q Consensus 173 v~~~~~~~~~~~~------------------------------------------------------------------- 185 (306)
|.|+.........
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 9999765421000
Q ss_pred -----------------------------------CCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEec
Q 021890 186 -----------------------------------PVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH 230 (306)
Q Consensus 186 -----------------------------------~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~ 230 (306)
.......+.++|||+|||..+++++|+++|++| |.|.+|+++.+
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~-G~i~~v~~~~~ 242 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF-PGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc-CCeEEEEEecC
Confidence 000122345789999999999999999999997 99999999864
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEeeCcc
Q 021890 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM-GRPLRVAPSRQ 274 (306)
Q Consensus 231 ~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~v~~a~~ 274 (306)
. +|||||+|.+.++|.+|++.|||..|. |+.|+|.||+.
T Consensus 243 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 243 R-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 3 589999999999999999999999999 99999999873
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=5.9e-32 Score=231.51 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=146.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+ .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3568899999999 99999999999999999999998875 789999999999999999999999999999999999
Q ss_pred cccCCCCCCC--------------------------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCC-CeeEEEEEe
Q 021890 177 KIKKKNPFPP--------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIF 229 (306)
Q Consensus 177 ~~~~~~~~~~--------------------------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~ 229 (306)
.......... ......+..+|||+|||..+++++|+++|.+| | .|..|.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~ 186 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQ 186 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT-SCCEEEEEECS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc-CCCeeEEEEEE
Confidence 8652111100 00112346889999999999999999999997 9 999999875
Q ss_pred cCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEeeCcch
Q 021890 230 HDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM-GRPLRVAPSRQF 275 (306)
Q Consensus 230 ~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~v~~a~~~ 275 (306)
+ .+|||||+|.+.++|.+|++.|+|..++ |+.|+|.|+++.
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 3789999999999999999999999999 999999999874
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9.8e-32 Score=237.24 Aligned_cols=160 Identities=21% Similarity=0.291 Sum_probs=148.5
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....++|||+|||+++++++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 344678999999999999999999999999 998888 45689999999999999999999999999999999998
Q ss_pred ecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 176 AKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
+.. ..+|||+|||+.+++++|+++|..| |.|..+.++.+..+|.++|||||+|.+.++|.+|+.
T Consensus 92 ~~~---------------~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 155 (284)
T 3smz_A 92 QPT---------------DALLCVANLPPSLTQQQFEELVRPF-GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKS 155 (284)
T ss_dssp CCC---------------SCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cCC---------------CCEEEEcCCCCcCCHHHHHHHHHhc-CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHH
Confidence 532 4689999999999999999999997 999999999999899999999999999999999999
Q ss_pred HhCCceeCCeeEEEeeCcchhh
Q 021890 256 AFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 256 ~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
.|+|..++|+.|.|.|+.+...
T Consensus 156 ~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 156 DLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHTTCEETTEECEEEECCGGGC
T ss_pred HhCCCEeCCcEEEEEECCCCCC
Confidence 9999999999999999987653
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=7e-32 Score=235.53 Aligned_cols=158 Identities=29% Similarity=0.425 Sum_probs=144.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 34578999999999999999999999999999999654 8999999999999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 021890 178 IKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF 257 (306)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l 257 (306)
+ ..+|||+|||..+++++|+++|..| |.|..|.++.+ .+|.++|||||+|.+.++|.+|+..|
T Consensus 95 ~---------------~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 95 H---------------GAALTVKNLSPVVSNELLEQAFSQF-GPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp C---------------SSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred c---------------CCcccccCCCCCCCHHHHHHHHHhc-CCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 3 4689999999999999999999998 99999999999 57999999999999999999999999
Q ss_pred C-CceeC---CeeEEEeeCcchhh
Q 021890 258 Q-GKLFM---GRPLRVAPSRQFAR 277 (306)
Q Consensus 258 ~-g~~i~---g~~l~v~~a~~~~~ 277 (306)
+ |..+. |++|.|.++.+...
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEES
T ss_pred cCCeEEecCCCceEEEeeccccCc
Confidence 5 55555 99999999987643
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=4.2e-32 Score=227.01 Aligned_cols=167 Identities=18% Similarity=0.223 Sum_probs=145.5
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.++|||+|||+ .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 357899999999 99999999999999999999998765 7899999999999999999999999999999999997
Q ss_pred ccCCCCCCC--------------------------CCCCCCccceeeecCCChhhhHHHHHHHHHhcCC-CeeEEEEEec
Q 021890 178 IKKKNPFPP--------------------------VQPKPFATFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFH 230 (306)
Q Consensus 178 ~~~~~~~~~--------------------------~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~ 230 (306)
......... ......+..+|||+|||..+++++|+++|.+| | .|..+.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN-GGVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT-TSCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc-CCCceEEEEEeC
Confidence 653111000 00112347889999999999999999999997 9 9999998754
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEeeCcch
Q 021890 231 DNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM-GRPLRVAPSRQF 275 (306)
Q Consensus 231 ~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~-g~~l~v~~a~~~ 275 (306)
.+|+|||+|.+.++|.+|+..|||..++ |+.|+|.|+++.
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999999864
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.1e-31 Score=236.04 Aligned_cols=165 Identities=15% Similarity=0.221 Sum_probs=141.1
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 95 EEEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 95 ~~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
......++|||+|||+.+++++|+++|+.||.|.+|+|+++..+ ++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 34566789999999999999999999999999999999988765 48999999999999999996 89999999999999
Q ss_pred eecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHH
Q 021890 175 YAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETA 253 (306)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~A 253 (306)
++. ..+|||+|||+.+++++|+++|..| | .|..|.++.+.. |.++|||||+|.+.++|.+|
T Consensus 114 ~~~----------------~~~l~v~nlp~~~t~~~l~~~f~~~-G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 114 HLT----------------ECTLWMTNFPPSYTQRNIRDLLQDI-NVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp ECC----------------SCEEEEECCCTTCCHHHHHHHHHHT-TCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred ECC----------------CCEEEEECCCCCCCHHHHHHHHHHh-CCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 863 5789999999999999999999997 9 999999998876 78999999999999999999
Q ss_pred HHHhCCceeCCeeEEEeeCcchhhhh
Q 021890 254 ISAFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 254 l~~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
+..|+|..+.|+.|.|.|+.+..+..
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~ 201 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSK 201 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC----
T ss_pred HHHhCCCEeCCcEEEEEECCCCcccc
Confidence 99999999999999999998765543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1.3e-24 Score=175.22 Aligned_cols=147 Identities=20% Similarity=0.198 Sum_probs=115.6
Q ss_pred EEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccC----CCCCCCCCCCCCccceeeecCCCh
Q 021890 129 DIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK----KNPFPPVQPKPFATFNLFIANLSF 204 (306)
Q Consensus 129 ~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~----~~~~~~~~~~~~~~~~l~V~nL~~ 204 (306)
.+++..+.. .++|||||+|.+.++|++|++.+++....+..+.+....... ...............+|||+|||+
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 345555544 689999999999999999999887644433333333221110 011111222334468999999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 205 EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 205 ~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
.+++++|+++|+.| |.|..|.++++..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+++...
T Consensus 81 ~~~~~~l~~~F~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 81 RTSPDTLRRVFEKY-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TCCHHHHHHHHHHH-SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCHHHHHHHHHhc-CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999998 9999999999988999999999999999999999999999999999999999987544
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=8.9e-24 Score=161.16 Aligned_cols=109 Identities=15% Similarity=0.253 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
..+|||+|||+++++++|+++|+.||.|.+|+|+++.. .++|||||+|.+.++|++|++.|+|..|+|+.|+|.++..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 46799999999999999999999999999999998864 47999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCccceeeecCCChhhhHHH
Q 021890 180 KKNPFPPVQPKPFATFNLFIANLSFEARAKD 210 (306)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~ 210 (306)
....... ........+|||+|||+.+|++.
T Consensus 84 ~~~~~~~-~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAEL-GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC-----------------------------
T ss_pred ccccccc-ccccCCCCceEeCCCCCCccccc
Confidence 5433221 11222346799999999999863
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=1.1e-23 Score=168.37 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=113.8
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-cCCcccCeEEEEeeecccCCC-------CCCCCCCCCCccceeeecCCChhhhHH
Q 021890 138 NRNRGLAFVTMGSPDEATAALNNL-ESYEFEGRTLKVNYAKIKKKN-------PFPPVQPKPFATFNLFIANLSFEARAK 209 (306)
Q Consensus 138 ~~~~g~afV~f~~~~~a~~ai~~l-~~~~~~g~~l~v~~~~~~~~~-------~~~~~~~~~~~~~~l~V~nL~~~~t~~ 209 (306)
...+|+++|+|.+.++|++|++.+ ||..++| .+.+.++..+... ..........+.++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 456899999999999999999999 9999999 9999988753211 111122333456899999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchh
Q 021890 210 DLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFA 276 (306)
Q Consensus 210 ~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~ 276 (306)
+|+++|.+| |.|.+|+++++ ++|||||+|.+.++|.+|+..|||..|+|+.|+|.|++++.
T Consensus 89 ~l~~~F~~~-G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYY-GPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHH-SCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhh-CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999998 99999999875 58999999999999999999999999999999999998754
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=144.61 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
.+.++|||+|||+++|+++|+++|+.||.|.++++++++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346789999999999999999999999999999999987 5999999999999999999999999999999999999999
Q ss_pred cc
Q 021890 177 KI 178 (306)
Q Consensus 177 ~~ 178 (306)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=144.76 Aligned_cols=80 Identities=31% Similarity=0.451 Sum_probs=77.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
..+|||+|||+.+++++|+++|++| |.|.+|++++|+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.||+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSI-GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5789999999999999999999997 999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 021890 274 Q 274 (306)
Q Consensus 274 ~ 274 (306)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=140.96 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=80.9
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+||++.+++++|+++|++| |.|.+|.|++|+.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY-GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhhh
Q 021890 272 SRQFARL 278 (306)
Q Consensus 272 a~~~~~~ 278 (306)
++....+
T Consensus 83 a~~~~~~ 89 (110)
T 3s8s_A 83 DIKGQQR 89 (110)
T ss_dssp CSTTHHH
T ss_pred CCCCcHH
Confidence 9776543
No 27
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=4.5e-21 Score=150.26 Aligned_cols=127 Identities=22% Similarity=0.272 Sum_probs=83.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCC
Q 021890 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221 (306)
Q Consensus 142 g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~ 221 (306)
-++|++|.+...+..|+..++|....|+.- +.+..+ .....+.++|||+|||+.+++++|+++|+.| |.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~ 73 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKY-GR 73 (135)
T ss_dssp -------------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGG-SC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CC
Confidence 467888889999999999988876666531 122111 2233446889999999999999999999998 99
Q ss_pred eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhhhh
Q 021890 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 222 v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
|..|.++.+..+|.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+++.....
T Consensus 74 i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 74 VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 9999999998889999999999999999999999999999999999999998865433
No 28
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=9.4e-20 Score=143.43 Aligned_cols=85 Identities=25% Similarity=0.434 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45789999999999999999999999999999999887 58999999999999999999999999999999999999998
Q ss_pred ccCCCC
Q 021890 178 IKKKNP 183 (306)
Q Consensus 178 ~~~~~~ 183 (306)
.+....
T Consensus 121 ~~~~~~ 126 (139)
T 1u6f_A 121 SGHQRP 126 (139)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-21 Score=139.86 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=76.4
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC-CceeCCeeEEEeeC
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ-GKLFMGRPLRVAPS 272 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~-g~~i~g~~l~v~~a 272 (306)
.+|||+|||+.+++++|+++|++| | .|.+|++++|+.+|.++|||||+|.+.++|.+|++.|+ +..++|+.|+|.||
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~-G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH-GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH-TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh-CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 579999999999999999999998 7 89999999999999999999999999999999999874 56899999999999
Q ss_pred cchhh
Q 021890 273 RQFAR 277 (306)
Q Consensus 273 ~~~~~ 277 (306)
+++.+
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88654
No 30
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=3.2e-20 Score=150.51 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=80.8
Q ss_pred EEeCCHHHHHHHHHHhcCCccc--CeEEEEeeecccCCCC-----------CCCCCCCCCccceeeecCCChhhhHHHHH
Q 021890 146 VTMGSPDEATAALNNLESYEFE--GRTLKVNYAKIKKKNP-----------FPPVQPKPFATFNLFIANLSFEARAKDLR 212 (306)
Q Consensus 146 V~f~~~~~a~~ai~~l~~~~~~--g~~l~v~~~~~~~~~~-----------~~~~~~~~~~~~~l~V~nL~~~~t~~~l~ 212 (306)
.+|.+.++|+.|+..|++.... |+.....+........ ..+.+....+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999999987664 7777766643321100 11122233446789999999999999999
Q ss_pred HHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhhhh
Q 021890 213 EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 213 ~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 279 (306)
++|..| |.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++....
T Consensus 91 ~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcC-CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999998 999999999999999999999999999999999999999999999999999998866544
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=138.91 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.++|||+|||+++++++|+++|+.||.|.++.|++++ +|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45789999999999999999999999999999999988 59999999999999999999999999999999999999986
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 32
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8e-20 Score=135.52 Aligned_cols=85 Identities=22% Similarity=0.454 Sum_probs=79.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.||.|.++.+..+++|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34568899999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
.++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87653
No 33
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=8.7e-21 Score=138.30 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=75.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHh-cCCcccCeEEEEeeec
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHG-TVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNL-ESYEFEGRTLKVNYAK 177 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G-~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l-~~~~~~g~~l~v~~~~ 177 (306)
++|||+|||+++|+++|+++|+.|| .|.+|+|++++ +|.++|||||+|.+.++|++|++.+ ++..++|+.|+|.|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6799999999999999999999999 79999999887 5999999999999999999999977 5678999999999998
Q ss_pred ccCCC
Q 021890 178 IKKKN 182 (306)
Q Consensus 178 ~~~~~ 182 (306)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=9e-20 Score=130.39 Aligned_cols=82 Identities=35% Similarity=0.584 Sum_probs=78.0
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
+.+|||+|||..+++++|+++|.+| |.|..+.+++++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 3689999999999999999999997 999999999999999999999999999999999999999999999999999998
Q ss_pred chh
Q 021890 274 QFA 276 (306)
Q Consensus 274 ~~~ 276 (306)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=137.73 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=75.3
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCCeeE
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK----LFMGRPL 267 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G--~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~----~i~g~~l 267 (306)
-.+|||+|||+.+|+++|+++|++| | .|.+|++++|+.+|.++|||||+|.+.++|.+|++.|||. .|+||.|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~-G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPY-ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTT-CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhh-CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 5789999999999999999999998 8 4779999999999999999999999999999999999997 5999999
Q ss_pred EEeeCcc
Q 021890 268 RVAPSRQ 274 (306)
Q Consensus 268 ~v~~a~~ 274 (306)
.|.||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999986
No 36
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.2e-19 Score=138.08 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=92.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+++++++|+++|+.||.|.++.++.+ +.++|||||+|.+.++|.+|++.|||..++|+.|.|.|+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4578999999999999999999999999999999864 45699999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhc
Q 021890 179 KKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISE 218 (306)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~ 218 (306)
.... .+++...++++|.++|++|
T Consensus 85 ~~~~-----------------~~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 85 NRAF-----------------QKMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp HHHT-----------------TTSCHHHHHHHHHHHHHHH
T ss_pred Chhh-----------------hhhhHhHhHHHHHHHHHHh
Confidence 5443 4688999999999999998
No 37
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=138.01 Aligned_cols=85 Identities=22% Similarity=0.433 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+++++++|+++|+.||.|.+|.|..+.+|.++|||||+|.+.++|++|++.|||..|.|+.|+|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45688999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred ccCCC
Q 021890 178 IKKKN 182 (306)
Q Consensus 178 ~~~~~ 182 (306)
.....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76544
No 38
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=6.4e-20 Score=136.11 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=81.1
Q ss_pred cceeeecCCCh------hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-ee
Q 021890 194 TFNLFIANLSF------EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG-RP 266 (306)
Q Consensus 194 ~~~l~V~nL~~------~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-~~ 266 (306)
.++|||+|||. .+++++|+++|++| |.|.+|.|++++.||.++|||||+|.+.++|.+|++.|||..|.| +.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~-G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA-GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc-CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 67899999999 99999999999997 999999999999999999999999999999999999999999999 99
Q ss_pred EEEeeCcchhhhh
Q 021890 267 LRVAPSRQFARLQ 279 (306)
Q Consensus 267 l~v~~a~~~~~~~ 279 (306)
|+|.+++++.+..
T Consensus 85 l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 85 LFLYTMKDVERYN 97 (100)
T ss_dssp CEEEESHHHHHHH
T ss_pred EEEEECchhhhhh
Confidence 9999999877654
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=130.32 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|++|++.|||..++|+.|+|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45789999999999999999999999999999999986 79999999999999999999999999999999999999998
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.1e-19 Score=128.46 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=75.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
.+|||+|||+++++++|+++|+.||.|.++.++++. +|.++|||||+|.+.++|++|++.|||..++|+.|+|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999999999999886 6999999999999999999999999999999999999999875
Q ss_pred C
Q 021890 180 K 180 (306)
Q Consensus 180 ~ 180 (306)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=9.3e-20 Score=135.41 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=84.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccC
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKK 180 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~ 180 (306)
++|||+|||+++++++|+++|+.||.|.++.+..+ ++|||||+|.+.++|++|++.|+|..++|+.|+|.++..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999876 68999999999999999999999999999999999998876
Q ss_pred CCCCCCCC-CCCCccceeeecCCC
Q 021890 181 KNPFPPVQ-PKPFATFNLFIANLS 203 (306)
Q Consensus 181 ~~~~~~~~-~~~~~~~~l~V~nL~ 203 (306)
........ .......+|||+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CcccCCCCCccccCCCceecCCCC
Confidence 44322211 122235789999997
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=130.32 Aligned_cols=82 Identities=30% Similarity=0.419 Sum_probs=76.8
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||..+++++|+++|++| |.|..+.++.+..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 36789999999999999999999998 99999999999889999999999999999999999999999999999999999
Q ss_pred cch
Q 021890 273 RQF 275 (306)
Q Consensus 273 ~~~ 275 (306)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=4.7e-20 Score=135.22 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCC--eEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCC----cccCeE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGT--VLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESY----EFEGRT 170 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~--i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~----~~~g~~ 170 (306)
..-.+|||+|||+++|+++|+++|+.||. +.+|++++++ +|+++|||||+|.+.++|++|++.|||. .++||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44578999999999999999999999995 6789999987 5999999999999999999999999997 489999
Q ss_pred EEEeeecc
Q 021890 171 LKVNYAKI 178 (306)
Q Consensus 171 l~v~~~~~ 178 (306)
|.|+||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 44
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=3.2e-20 Score=134.98 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcC--CeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHG--TVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G--~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
.+|||+|||+++++++|+++|+.|| .|.+++++.++ +|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999987 69999999999999999999999999999999999999998
Q ss_pred ccCCC
Q 021890 178 IKKKN 182 (306)
Q Consensus 178 ~~~~~ 182 (306)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 45
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=2.7e-19 Score=136.10 Aligned_cols=87 Identities=20% Similarity=0.358 Sum_probs=80.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999988 699999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 021890 176 AKIKKKNP 183 (306)
Q Consensus 176 ~~~~~~~~ 183 (306)
+.++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98876543
No 46
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=3e-19 Score=133.61 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccC---eEEEEe
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG---RTLKVN 174 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g---~~l~v~ 174 (306)
...++|||+|||+++++++|+++|+.||.|.+|.|+.+++|.++|||||+|.+.++|++|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 34688999999999999999999999999999999999899999999999999999999999999999988 999999
Q ss_pred eecccCCC
Q 021890 175 YAKIKKKN 182 (306)
Q Consensus 175 ~~~~~~~~ 182 (306)
|+..+...
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99876654
No 47
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=133.43 Aligned_cols=87 Identities=26% Similarity=0.423 Sum_probs=80.9
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.|..+ +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3446789999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 021890 176 AKIKKKNP 183 (306)
Q Consensus 176 ~~~~~~~~ 183 (306)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98876544
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=133.75 Aligned_cols=87 Identities=18% Similarity=0.410 Sum_probs=80.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred eecccCCC
Q 021890 175 YAKIKKKN 182 (306)
Q Consensus 175 ~~~~~~~~ 182 (306)
|+.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876554
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=132.45 Aligned_cols=85 Identities=32% Similarity=0.541 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456889999999999999999999999999999999988 7999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887654
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=4e-19 Score=135.16 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=81.3
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+.+++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|++|++.|+|..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999986 79999999999999999999999999999999999999
Q ss_pred eecccCCCC
Q 021890 175 YAKIKKKNP 183 (306)
Q Consensus 175 ~~~~~~~~~ 183 (306)
|+..+....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998776543
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.8e-19 Score=129.41 Aligned_cols=80 Identities=30% Similarity=0.493 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998885 6889999999999999999999999999999999999997
Q ss_pred c
Q 021890 177 K 177 (306)
Q Consensus 177 ~ 177 (306)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=133.76 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=82.3
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|.+| |.|..|.++.+..+|.++|||||+|.+.++|.+|+..|+|..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF-GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT-CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4457899999999999999999999997 999999999998899999999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++++....
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998876544
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=131.81 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=77.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+.+++++|+++|+.||.|.++.|..++.|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34568899999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cc
Q 021890 177 KI 178 (306)
Q Consensus 177 ~~ 178 (306)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.6e-19 Score=137.46 Aligned_cols=83 Identities=30% Similarity=0.448 Sum_probs=75.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
..+|||+|||+.+++++|+++|.+| |.|.+|+|+++. +.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc-CCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4679999999999999999999998 999999999986 4479999999999999999999999999999999999998
Q ss_pred chhhhh
Q 021890 274 QFARLQ 279 (306)
Q Consensus 274 ~~~~~~ 279 (306)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 765433
No 55
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.9e-20 Score=134.03 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=72.7
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G--~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
.+|||+|||+.+++++|+++|++| | .|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~-G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL-GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT-TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh-CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 479999999999999999999997 9 9999999999999999999999999999999999999999999999999999
Q ss_pred cchhhh
Q 021890 273 RQFARL 278 (306)
Q Consensus 273 ~~~~~~ 278 (306)
.+....
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 886543
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.3e-19 Score=132.04 Aligned_cols=85 Identities=15% Similarity=0.344 Sum_probs=80.3
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
++++|||+|||..+++++|+++|++| |.|..|.++.+..+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV-GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 36789999999999999999999997 99999999999989999999999999999999999999999999999999999
Q ss_pred cchhhh
Q 021890 273 RQFARL 278 (306)
Q Consensus 273 ~~~~~~ 278 (306)
+++...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 887653
No 57
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.9e-19 Score=129.26 Aligned_cols=81 Identities=23% Similarity=0.378 Sum_probs=77.3
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|.+| |.|..+.+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc-CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999998 9999999999988999999999999999999999999999999999999999
Q ss_pred Cc
Q 021890 272 SR 273 (306)
Q Consensus 272 a~ 273 (306)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=132.10 Aligned_cols=87 Identities=25% Similarity=0.392 Sum_probs=81.4
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|..| |.|..|.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY-GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999997 9999999999988899999999999999999999999999999999999999
Q ss_pred Ccchhhhh
Q 021890 272 SRQFARLQ 279 (306)
Q Consensus 272 a~~~~~~~ 279 (306)
++++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99876543
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.9e-19 Score=131.48 Aligned_cols=82 Identities=23% Similarity=0.481 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
.++|||+|||+++++++|+++|+.||.|.++++..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4789999999999999999999999999999999887 589999999999999999999999999999999999999987
Q ss_pred cCC
Q 021890 179 KKK 181 (306)
Q Consensus 179 ~~~ 181 (306)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 60
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=131.35 Aligned_cols=86 Identities=24% Similarity=0.424 Sum_probs=80.9
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||..+++++|+++|++| |.|..|.++.+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF-GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46899999999999999999999997 99999999999989999999999999999999999999999999999999999
Q ss_pred cchhhhh
Q 021890 273 RQFARLQ 279 (306)
Q Consensus 273 ~~~~~~~ 279 (306)
+++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8866543
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=2.4e-19 Score=136.38 Aligned_cols=88 Identities=30% Similarity=0.349 Sum_probs=81.9
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+++..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF-GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG-SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446899999999999999999999998 999999999999899999999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 998876544
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=129.97 Aligned_cols=85 Identities=25% Similarity=0.460 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+++++++|+++|+.||.|.++.+..++ ++.++|||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45789999999999999999999999999999999887 59999999999999999999999999999999999999998
Q ss_pred ccCCCC
Q 021890 178 IKKKNP 183 (306)
Q Consensus 178 ~~~~~~ 183 (306)
.+....
T Consensus 84 ~~~~~~ 89 (95)
T 2dnz_A 84 ERLDGG 89 (95)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 766543
No 63
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=131.38 Aligned_cols=86 Identities=19% Similarity=0.434 Sum_probs=79.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.++.|+.++ +|.++|||||+|.+.++|++|++ |++..|+|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999887 58999999999999999999999 999999999999999
Q ss_pred ecccCCCC
Q 021890 176 AKIKKKNP 183 (306)
Q Consensus 176 ~~~~~~~~ 183 (306)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 98776543
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=7.5e-19 Score=133.64 Aligned_cols=88 Identities=30% Similarity=0.405 Sum_probs=82.0
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|..| |.|..|.++++..+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3457899999999999999999999998 999999999998899999999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++++....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998876543
No 65
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=129.43 Aligned_cols=84 Identities=27% Similarity=0.416 Sum_probs=79.4
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
...+.++|||+|||..+++++|+++|++| |.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTT-SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557899999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred eeCcc
Q 021890 270 APSRQ 274 (306)
Q Consensus 270 ~~a~~ 274 (306)
.||+.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.7e-19 Score=130.35 Aligned_cols=87 Identities=29% Similarity=0.533 Sum_probs=79.4
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.+..+ ++|||||+|.+.++|++|++.|+|..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3455689999999999999999999999999999999987655 899999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 021890 176 AKIKKKNP 183 (306)
Q Consensus 176 ~~~~~~~~ 183 (306)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98876543
No 67
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=132.91 Aligned_cols=86 Identities=24% Similarity=0.376 Sum_probs=80.7
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEE-EEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSA-EVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v-~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
+.++|||+|||..+++++|+++|.+| |.|..+ .+++++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF-GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46899999999999999999999997 999999 9999988999999999999999999999999999999999999999
Q ss_pred Ccchhhhh
Q 021890 272 SRQFARLQ 279 (306)
Q Consensus 272 a~~~~~~~ 279 (306)
++++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98876544
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=3e-19 Score=136.48 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=76.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.|.+++|++++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999886 58999999999999999999999999999999999999
Q ss_pred eec
Q 021890 175 YAK 177 (306)
Q Consensus 175 ~~~ 177 (306)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 69
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.4e-19 Score=130.42 Aligned_cols=86 Identities=23% Similarity=0.294 Sum_probs=78.3
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.+..+ ++|||||+|.+.++|++|++.|+|..|.|+.|+|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3455789999999999999999999999999999999987644 689999999999999999999999999999999999
Q ss_pred ecccCCC
Q 021890 176 AKIKKKN 182 (306)
Q Consensus 176 ~~~~~~~ 182 (306)
+..+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9886544
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=130.22 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=76.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|++|++.|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3446789999999999999999999999999999999887 489999999999999999999999999999999999999
Q ss_pred ecc
Q 021890 176 AKI 178 (306)
Q Consensus 176 ~~~ 178 (306)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 71
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=132.66 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=80.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++ ++.++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 33456899999999999999999999999999999999987 69999999999999999999999999999999999999
Q ss_pred eecccCCC
Q 021890 175 YAKIKKKN 182 (306)
Q Consensus 175 ~~~~~~~~ 182 (306)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99876654
No 72
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=132.67 Aligned_cols=83 Identities=23% Similarity=0.364 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+|.+..++ +|.++|||||+|.+.++|++|++.|||..++|+.|.|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456889999999999999999999999999999999887 5999999999999999999999999999999999999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8754
No 73
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=6e-19 Score=131.93 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=81.2
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC---eeEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG---RPLR 268 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g---~~l~ 268 (306)
.+.++|||+|||..+++++|+++|.+| |.|..|.++.++ +|.++|||||+|.+.++|.+|++.|||..+.| +.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF-GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 447899999999999999999999997 999999999987 69999999999999999999999999999998 9999
Q ss_pred EeeCcchhhhhcc
Q 021890 269 VAPSRQFARLQTK 281 (306)
Q Consensus 269 v~~a~~~~~~~~~ 281 (306)
|.|+++...+.+.
T Consensus 91 V~~a~~~~~~~~~ 103 (105)
T 2dnh_A 91 VKFADTDKESGPS 103 (105)
T ss_dssp EEESCSSCCCSCS
T ss_pred EEECccCcccCCC
Confidence 9999987765543
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.6e-19 Score=132.12 Aligned_cols=88 Identities=24% Similarity=0.497 Sum_probs=80.5
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeec-C-CCCcceEEEEEeCCHHHHHHHHHHh-cCCcccCeEEE
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMH-S-KNRNRGLAFVTMGSPDEATAALNNL-ESYEFEGRTLK 172 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~-~-~~~~~g~afV~f~~~~~a~~ai~~l-~~~~~~g~~l~ 172 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.+ + +|.++|||||+|.+.++|++|++.| |+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445688999999999999999999999999999999988 3 7999999999999999999999999 99999999999
Q ss_pred EeeecccCCCC
Q 021890 173 VNYAKIKKKNP 183 (306)
Q Consensus 173 v~~~~~~~~~~ 183 (306)
|.|+.++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998865543
No 75
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=132.93 Aligned_cols=87 Identities=24% Similarity=0.434 Sum_probs=80.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.++.|+.++ +|.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999887 589999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 021890 176 AKIKKKNP 183 (306)
Q Consensus 176 ~~~~~~~~ 183 (306)
+.......
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 98765443
No 76
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=132.55 Aligned_cols=86 Identities=28% Similarity=0.446 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456889999999999999999999999999999998886 6899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 021890 177 KIKKKNP 183 (306)
Q Consensus 177 ~~~~~~~ 183 (306)
.++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8876544
No 77
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-19 Score=134.37 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=76.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++|+++|+++|+.||.|.+|.|++++.|.++|||||+|.+.++|.+|+. ++|..++|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345688999999999999999999999999999999998889999999999999999999999 8999999999999987
Q ss_pred cc
Q 021890 177 KI 178 (306)
Q Consensus 177 ~~ 178 (306)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 78
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=130.28 Aligned_cols=85 Identities=19% Similarity=0.331 Sum_probs=79.3
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|.+| |.|..|.++.+. +|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446889999999999999999999997 999999999988 79999999999999999999999999999999999999
Q ss_pred eCcchhh
Q 021890 271 PSRQFAR 277 (306)
Q Consensus 271 ~a~~~~~ 277 (306)
|++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987654
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=129.51 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.++.+..++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 356789999999999999999999999999999999887 4899999999999999999999999999999999999997
Q ss_pred c
Q 021890 177 K 177 (306)
Q Consensus 177 ~ 177 (306)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 80
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=131.94 Aligned_cols=87 Identities=20% Similarity=0.426 Sum_probs=80.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..+.++|||+|||+++++++|+++|+.||.|.++.|+.++ ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456889999999999999999999999999999999887 588999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 021890 176 AKIKKKNP 183 (306)
Q Consensus 176 ~~~~~~~~ 183 (306)
+..+....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 98866543
No 81
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=132.83 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=80.1
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|..| |.|..|.++.+..+|.++|||||+|.+.++|.+|+..|+|..|+|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3446889999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred eCcchh
Q 021890 271 PSRQFA 276 (306)
Q Consensus 271 ~a~~~~ 276 (306)
||+++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998754
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=134.21 Aligned_cols=88 Identities=25% Similarity=0.317 Sum_probs=81.6
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|..| |.|..|.++.+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKY-GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3446899999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++......
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 998765443
No 83
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=128.72 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=77.8
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|++| |.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY-GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT-SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456899999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred eCc
Q 021890 271 PSR 273 (306)
Q Consensus 271 ~a~ 273 (306)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=131.62 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc--CCcccCeEEEEeee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKVNYA 176 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~~g~~l~v~~~ 176 (306)
..++|||+|||+.+++++|+++|+.||.|.+++|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|+|.|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4578999999999999999999999999999999875 8999999999999999999886 47899999999999
Q ss_pred cccCCCC
Q 021890 177 KIKKKNP 183 (306)
Q Consensus 177 ~~~~~~~ 183 (306)
..+....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8765543
No 85
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=131.21 Aligned_cols=86 Identities=19% Similarity=0.398 Sum_probs=80.1
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|.+| |.|..|.++.++.+|.++|||||+|.+.++|.+|++ |+|..|+|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKF-GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSS-SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456899999999999999999999997 999999999999899999999999999999999998 99999999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
|++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99886553
No 86
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=133.14 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=81.5
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|.+| |.|..|.++.+..+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT-SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346899999999999999999999997 9999999999988999999999999999999999999999999999999999
Q ss_pred Ccchhhhh
Q 021890 272 SRQFARLQ 279 (306)
Q Consensus 272 a~~~~~~~ 279 (306)
+++.....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876544
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=133.47 Aligned_cols=82 Identities=29% Similarity=0.539 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+.+++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 45789999999999999999999999999999999886 68999999999999999999999999999999999999998
Q ss_pred ccC
Q 021890 178 IKK 180 (306)
Q Consensus 178 ~~~ 180 (306)
++.
T Consensus 105 ~k~ 107 (108)
T 2jrs_A 105 ERT 107 (108)
T ss_dssp SSC
T ss_pred cCC
Confidence 753
No 88
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=130.78 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=78.1
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeE--------EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVS--------AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~--------v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~ 261 (306)
...+..+|||+|||.++++++|+++|++| |.|.. +.++.++.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTT-SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHh-CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34457899999999999999999999997 99999 9999999999999999999999999999999999999
Q ss_pred eCCeeEEEeeCc
Q 021890 262 FMGRPLRVAPSR 273 (306)
Q Consensus 262 i~g~~l~v~~a~ 273 (306)
|+|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999985
No 89
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=129.99 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEE-EEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI-ELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~-~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
..++|||+|||+++++++|+++|+.||.|.++ +++.++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999 999885 6999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.++...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 876654
No 90
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=132.49 Aligned_cols=86 Identities=28% Similarity=0.443 Sum_probs=80.8
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|.+| |.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKY-GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHH-SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999999998 9999999999988999999999999999999999999999999999999999
Q ss_pred Ccchhhh
Q 021890 272 SRQFARL 278 (306)
Q Consensus 272 a~~~~~~ 278 (306)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876653
No 91
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-19 Score=129.89 Aligned_cols=85 Identities=22% Similarity=0.442 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC--C--CcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK--N--RNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~--~--~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
+.++|||+|||+++++++|+++|+.||.|.++.+..+.. | .++|||||+|.+.++|++|++.|||..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999999999988763 4 889999999999999999999999999999999999
Q ss_pred eecccCCCC
Q 021890 175 YAKIKKKNP 183 (306)
Q Consensus 175 ~~~~~~~~~ 183 (306)
++..+....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998766543
No 92
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=132.23 Aligned_cols=87 Identities=23% Similarity=0.340 Sum_probs=81.4
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.|..|.++.+..+|.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3457899999999999999999999997 999999999998899999999999999999999999999999999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
|+++..+.
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99886653
No 93
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=132.00 Aligned_cols=87 Identities=20% Similarity=0.391 Sum_probs=80.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhc------CCcccCe
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLE------SYEFEGR 169 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~------~~~~~g~ 169 (306)
....++|||+|||+++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|.+|++.|+ +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456889999999999999999999999999999999887 58999999999999999999999999 9999999
Q ss_pred EEEEeeecccCCCC
Q 021890 170 TLKVNYAKIKKKNP 183 (306)
Q Consensus 170 ~l~v~~~~~~~~~~ 183 (306)
.|+|.|+.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998765543
No 94
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.3e-19 Score=132.47 Aligned_cols=88 Identities=25% Similarity=0.364 Sum_probs=81.6
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC------CceeC
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ------GKLFM 263 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~------g~~i~ 263 (306)
...+.++|||+|||+.+++++|+++|..| |.|..|.++++..+|.++|||||+|.+.++|.+|+..|+ |..|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQF-GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 33457899999999999999999999997 999999999999999999999999999999999999999 99999
Q ss_pred CeeEEEeeCcchhhh
Q 021890 264 GRPLRVAPSRQFARL 278 (306)
Q Consensus 264 g~~l~v~~a~~~~~~ 278 (306)
|+.|+|.|++++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999886543
No 95
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5.1e-19 Score=133.49 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=80.6
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|..| |.|..|.++.+..+|.++|||||+|.+.++|.+|+..|+|..|+|+.|+|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456899999999999999999999998 999999999998899999999999999999999999999999999999999
Q ss_pred eCcchhh
Q 021890 271 PSRQFAR 277 (306)
Q Consensus 271 ~a~~~~~ 277 (306)
|++++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987554
No 96
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=6.8e-19 Score=132.79 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=78.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456889999999999999999999999999999998886 699999999999999999999999999999999999999
Q ss_pred ecccCC
Q 021890 176 AKIKKK 181 (306)
Q Consensus 176 ~~~~~~ 181 (306)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987643
No 97
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=131.24 Aligned_cols=86 Identities=28% Similarity=0.413 Sum_probs=79.5
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDN---PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~---tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
+.++|||+|||+.+++++|+++|++| |.|..|.++.+.. ++.++|||||+|.+.++|.+|+..|+|..|+|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV-GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46889999999999999999999997 9999999999876 6689999999999999999999999999999999999
Q ss_pred eeCcchhhhh
Q 021890 270 APSRQFARLQ 279 (306)
Q Consensus 270 ~~a~~~~~~~ 279 (306)
.|++++.+..
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998866543
No 98
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=131.04 Aligned_cols=83 Identities=16% Similarity=0.269 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+++++++|+++|+.||.|.+|.|+.+++|.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 44688999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred ccC
Q 021890 178 IKK 180 (306)
Q Consensus 178 ~~~ 180 (306)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 99
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=137.20 Aligned_cols=91 Identities=25% Similarity=0.370 Sum_probs=83.9
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
.....++|||+|||..+++++|+++|+.| |.|.+|.++++..+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERY-GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHH-SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456899999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred eeCcchhhhhcc
Q 021890 270 APSRQFARLQTK 281 (306)
Q Consensus 270 ~~a~~~~~~~~~ 281 (306)
.|++++.++...
T Consensus 117 ~~a~~~~~~~~~ 128 (139)
T 1u6f_A 117 ALAASGHQRPGI 128 (139)
T ss_dssp EESSCCCCCCCS
T ss_pred EECCCCCCCCCC
Confidence 999987765533
No 100
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=5.7e-19 Score=141.52 Aligned_cols=81 Identities=16% Similarity=0.326 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC--CeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHG--TVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G--~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..++|||||||+++++++|+++|+.|| .|.+|+|+.++ +|+++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458899999999999999999999999 99999999997 699999999999999999999999999999999999999
Q ss_pred eccc
Q 021890 176 AKIK 179 (306)
Q Consensus 176 ~~~~ 179 (306)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=131.26 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhh-cCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCc-ccCeEEEEee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQ-HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE-FEGRTLKVNY 175 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~-~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~-~~g~~l~v~~ 175 (306)
...++|||+|||+++++++|+++|+. ||.|.++.|+.+.+|.++|||||+|.+.++|.+|++.|+|.. ++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34678999999999999999999999 999999999999899999999999999999999999999999 9999999999
Q ss_pred ecccCCC
Q 021890 176 AKIKKKN 182 (306)
Q Consensus 176 ~~~~~~~ 182 (306)
+.++...
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9876554
No 102
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.1e-19 Score=131.35 Aligned_cols=88 Identities=23% Similarity=0.390 Sum_probs=81.2
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEec-CCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeeE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFH-DNPRRSAGYGFVSFKSKKVAETAISAF-QGKLFMGRPL 267 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~-~~tg~~~g~afV~f~~~~~a~~Al~~l-~g~~i~g~~l 267 (306)
...+.++|||+|||..+++++|+++|..| |.|..|.++.+ ..+|.++|||||+|.+.++|.+|++.| ||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTF-GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHcc-CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34457899999999999999999999997 99999999998 778999999999999999999999999 9999999999
Q ss_pred EEeeCcchhhh
Q 021890 268 RVAPSRQFARL 278 (306)
Q Consensus 268 ~v~~a~~~~~~ 278 (306)
+|.|+++....
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999886543
No 103
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.1e-18 Score=130.97 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+.+++++|+++|+.||.|.++.|+.+.+|.++|||||+|.+.++|++|++.|+|..|.|+.|+|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 34688999999999999999999999999999999999899999999999999999999999999999999999999985
No 104
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=132.94 Aligned_cols=85 Identities=25% Similarity=0.486 Sum_probs=80.0
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
...+.++|||+|||..+++++|+++|++| |.|..|.+++++.+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTT-SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34457899999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred eeCcch
Q 021890 270 APSRQF 275 (306)
Q Consensus 270 ~~a~~~ 275 (306)
.+++++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 999875
No 105
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.1e-18 Score=125.89 Aligned_cols=80 Identities=20% Similarity=0.505 Sum_probs=74.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|++|++ +++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 59999999999999999999997 58889999999998
Q ss_pred ee
Q 021890 175 YA 176 (306)
Q Consensus 175 ~~ 176 (306)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 106
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=129.72 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEE--------EEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCe
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--------IELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGR 169 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~--------~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 169 (306)
..++|||+|||+++++++|+++|+.||.|.+ ++++.++ +|.++|||||+|.+.++|++|++.|||..++|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4578999999999999999999999999999 9999986 699999999999999999999999999999999
Q ss_pred EEEEeeec
Q 021890 170 TLKVNYAK 177 (306)
Q Consensus 170 ~l~v~~~~ 177 (306)
.|+|.+++
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999874
No 107
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.4e-19 Score=134.32 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=76.2
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHhhhcCCeEEEEEeecCC-CCcceEEEEEeCCHHHHHHHHHHhcCCcccC-eEE
Q 021890 100 KTRLVAQNVPW------TSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEG-RTL 171 (306)
Q Consensus 100 ~~~l~V~nL~~------~~t~~~L~~~f~~~G~i~~~~~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g-~~l 171 (306)
.++|||+|||+ .+++++|+++|+.||.|.+++|+.++. |+++|||||+|.+.++|++|++.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999999 999999999999999999999999884 9999999999999999999999999999999 999
Q ss_pred EEeeeccc
Q 021890 172 KVNYAKIK 179 (306)
Q Consensus 172 ~v~~~~~~ 179 (306)
+|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 108
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=131.53 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=79.3
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
...++|||+|||+.+++++|+++|++| |.|.+|.++++.. |.++|||||+|.+.++|.+|+. ++|..|+|+.|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~-G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDK-GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTS-SCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhc-CCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 346899999999999999999999997 9999999999987 9999999999999999999999 899999999999999
Q ss_pred Ccchhhhhc
Q 021890 272 SRQFARLQT 280 (306)
Q Consensus 272 a~~~~~~~~ 280 (306)
+........
T Consensus 86 ~~~~~~~k~ 94 (103)
T 1s79_A 86 KDDYFAKKN 94 (103)
T ss_dssp HHHHHHHHH
T ss_pred chHHHHHHH
Confidence 888665443
No 109
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=7.5e-19 Score=131.63 Aligned_cols=88 Identities=19% Similarity=0.359 Sum_probs=80.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcc---cCeEE
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEF---EGRTL 171 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~---~g~~l 171 (306)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|++.|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34456889999999999999999999999999999999887 599999999999999999999999999988 89999
Q ss_pred EEeeecccCCCC
Q 021890 172 KVNYAKIKKKNP 183 (306)
Q Consensus 172 ~v~~~~~~~~~~ 183 (306)
+|.++..+....
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998766543
No 110
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=128.37 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 99 SKTRLVAQNVPWTSTHEDIR----ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~----~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
..++|||+|||+++++++|+ ++|+.||.|.+|+|+.++.+ +|||||+|.+.++|++|++.|||..++|+.|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45789999999999999999 99999999999999988766 8999999999999999999999999999999999
Q ss_pred eecccCC
Q 021890 175 YAKIKKK 181 (306)
Q Consensus 175 ~~~~~~~ 181 (306)
++.+...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9977543
No 111
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=7.9e-19 Score=131.51 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=80.9
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCeeE
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF---MGRPL 267 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i---~g~~l 267 (306)
..+.++|||+|||..+++++|+++|++| |.|..|.++.+..+|.++|||||+|.+.++|.+|++.|||..+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF-GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH-SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3457899999999999999999999998 9999999999999999999999999999999999999999988 89999
Q ss_pred EEeeCcchhhh
Q 021890 268 RVAPSRQFARL 278 (306)
Q Consensus 268 ~v~~a~~~~~~ 278 (306)
+|.|++++.+.
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999886653
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=6.2e-19 Score=136.88 Aligned_cols=84 Identities=25% Similarity=0.472 Sum_probs=78.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|++|++.|+|..|+|+.|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999887 589999999999999999999999999999999999999
Q ss_pred ecccC
Q 021890 176 AKIKK 180 (306)
Q Consensus 176 ~~~~~ 180 (306)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98754
No 113
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=133.03 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=79.8
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||..+++++|+++|++| |.|..|.++.+. +|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKH-GPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTS-SCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 46899999999999999999999997 999999999988 8999999999999999999999999999999999999999
Q ss_pred cchhhhh
Q 021890 273 RQFARLQ 279 (306)
Q Consensus 273 ~~~~~~~ 279 (306)
++.....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8876544
No 114
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=128.16 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCc--ccCeEEEEeee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE--FEGRTLKVNYA 176 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~--~~g~~l~v~~~ 176 (306)
++++|||+|||+.+++++|+++|+.||.|.++++++. +|||||+|.+.++|.+|++.|++.. +.|+.|+|.|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 4688999999999999999999999999999999853 8999999999999999999999875 78999999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
+.+.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8653
No 115
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=128.59 Aligned_cols=84 Identities=20% Similarity=0.387 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.|| |.+|.|+.++ +|.++|||||+|.+.++|++|+ .|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3468899999999999999999999997 9999999987 5999999999999999999999 79999999999999999
Q ss_pred cccCCCC
Q 021890 177 KIKKKNP 183 (306)
Q Consensus 177 ~~~~~~~ 183 (306)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8765543
No 116
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=133.02 Aligned_cols=83 Identities=30% Similarity=0.564 Sum_probs=76.4
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....++|||+|||+++++++|+++|+.||.|.++.+..+.. .++|||||+|.+.++|++|++.|+|..++|+.|+|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344568899999999999999999999999999999988764 4899999999999999999999999999999999999
Q ss_pred eccc
Q 021890 176 AKIK 179 (306)
Q Consensus 176 ~~~~ 179 (306)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 117
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.4e-18 Score=126.67 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+++++++|+++|+.||.|.++.+.+ .+|.++|||||+|.+.++|++|++.|+|..++|+.|+|.++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 468899999999999999999999999999999987 4788999999999999999999999999999999999999987
Q ss_pred cCCC
Q 021890 179 KKKN 182 (306)
Q Consensus 179 ~~~~ 182 (306)
....
T Consensus 86 ~~~~ 89 (92)
T 2dgv_A 86 ASGP 89 (92)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 118
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=8.9e-19 Score=140.39 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=78.8
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G--~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.++|||+|||+++++++|+++|..| | .|..|+|+.|..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~-G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSI-GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHT-TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 5789999999999999999999997 9 999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
|.++..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 987654
No 119
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=129.81 Aligned_cols=86 Identities=30% Similarity=0.485 Sum_probs=79.8
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.|..|.++.+ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF-GTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT-SCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457899999999999999999999997 99999999998 78999999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 999876544
No 120
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=126.27 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=76.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.| .|.+++|+++.+|+++|||||+|.+.++|.+|++ |||..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3456889999999999999999999999 8999999999889999999999999999999999 9999999999999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
..+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8753
No 121
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=130.58 Aligned_cols=86 Identities=24% Similarity=0.413 Sum_probs=80.0
Q ss_pred CccceeeecCCChhhhHHHHHHHHHh-cCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce-eCCeeEEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFIS-EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL-FMGRPLRV 269 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~-i~g~~l~v 269 (306)
.+.++|||+|||+.+++++|+++|.+ | |.|..|.++.+. +|.++|||||+|.+.++|.+|++.|+|.. |+|+.|+|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~-G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY-PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC-TTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC-CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 44689999999999999999999999 8 999999999998 89999999999999999999999999999 99999999
Q ss_pred eeCcchhhhh
Q 021890 270 APSRQFARLQ 279 (306)
Q Consensus 270 ~~a~~~~~~~ 279 (306)
.|++++....
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998765543
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.8e-19 Score=129.56 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=79.3
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCee-EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCee----
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVV-SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP---- 266 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~-~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~---- 266 (306)
.+.++|||+|||+.+++++|+++|.+| |.|. .|++++++.+|.++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATM-GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHT-TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHh-CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 347899999999999999999999997 9999 9999999999999999999999999999999999999999999
Q ss_pred EEEeeCcchh
Q 021890 267 LRVAPSRQFA 276 (306)
Q Consensus 267 l~v~~a~~~~ 276 (306)
|+|.||++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998754
No 123
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.2e-19 Score=129.74 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeE-EEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeE----E
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVL-DIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT----L 171 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~-~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~----l 171 (306)
...++|||+|||+++++++|+++|+.||.|. ++++++++ +|.++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3468899999999999999999999999999 99999987 6999999999999999999999999999999999 9
Q ss_pred EEeeecccC
Q 021890 172 KVNYAKIKK 180 (306)
Q Consensus 172 ~v~~~~~~~ 180 (306)
+|.|+.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997654
No 124
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=126.02 Aligned_cols=82 Identities=20% Similarity=0.377 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC-CC-cceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NR-NRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~-~~-~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
..++|||+|||+++++++|+++|+.||.|.++.+..+.. +. ++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999988874 33 8999999999999999999999999999999999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 125
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.5e-18 Score=125.61 Aligned_cols=80 Identities=21% Similarity=0.411 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.++|||+|||+++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|++|+ .|+|..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35789999999999999999999999999999999987 6999999999999999999999 799999999999999987
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 126
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=131.88 Aligned_cols=84 Identities=24% Similarity=0.427 Sum_probs=77.7
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.+...++|||+|||+++++++|+++|+.||.|.+|+|++++ ++.++|||||+|.+.++|++|++.+++ .|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 44567899999999999999999999999999999999887 599999999999999999999999998 8999999999
Q ss_pred eecccC
Q 021890 175 YAKIKK 180 (306)
Q Consensus 175 ~~~~~~ 180 (306)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997654
No 127
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.4e-18 Score=129.42 Aligned_cols=85 Identities=19% Similarity=0.360 Sum_probs=79.1
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|..| | |..|.++++..+|.++|||||+|.+.++|.+|+ .|+|..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 3446899999999999999999999998 7 999999999999999999999999999999999 899999999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
|++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99886543
No 128
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1e-18 Score=135.72 Aligned_cols=85 Identities=28% Similarity=0.376 Sum_probs=80.1
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.|..|.+++++.+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTT-SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3457899999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred eCcchh
Q 021890 271 PSRQFA 276 (306)
Q Consensus 271 ~a~~~~ 276 (306)
|++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998754
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-19 Score=133.24 Aligned_cols=86 Identities=26% Similarity=0.528 Sum_probs=81.2
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||..+++++|+++|..| |.|..+.++.+..+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV-GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT-SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc-CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35789999999999999999999997 99999999999889999999999999999999999999999999999999999
Q ss_pred cchhhhh
Q 021890 273 RQFARLQ 279 (306)
Q Consensus 273 ~~~~~~~ 279 (306)
++.....
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 9877654
No 130
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.7e-19 Score=129.60 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCC--cccCeEEEEee
Q 021890 99 SKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY--EFEGRTLKVNY 175 (306)
Q Consensus 99 ~~~~l~V~nL~~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~--~~~g~~l~v~~ 175 (306)
+.++|||+|||+ .+++++|+++|+.||.|.++.|+++ +|||||+|.+.++|.+|++.|++. .|.|+.|+|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 468899999999 9999999999999999999999865 689999999999999999999864 59999999999
Q ss_pred ecccCCC
Q 021890 176 AKIKKKN 182 (306)
Q Consensus 176 ~~~~~~~ 182 (306)
+......
T Consensus 89 a~~~~~~ 95 (102)
T 1x4d_A 89 SQKYKRI 95 (102)
T ss_dssp ECCCTTS
T ss_pred CCCCCCC
Confidence 9865443
No 131
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=129.08 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-C-CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-K-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~-~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
...++|||+|||+++++++|+++|+.|| |.+|.|+.++ + |.++|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3458899999999999999999999999 9999999887 3 899999999999999999999 8999999999999999
Q ss_pred ecccCCCC
Q 021890 176 AKIKKKNP 183 (306)
Q Consensus 176 ~~~~~~~~ 183 (306)
+.++....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98876543
No 132
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=128.16 Aligned_cols=84 Identities=24% Similarity=0.469 Sum_probs=76.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.||.|.+|.|..+ +.++|||||+|.+.++|++|++.||+..|+|+.|+|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345689999999999999999999999999999998553 557999999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
......
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876544
No 133
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=132.09 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=81.7
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCee--------EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVV--------SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~--------~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~ 261 (306)
...+.++|||+|||..+++++|+++|.+| |.|. .|.|+.+..+|.++|||||+|.+.++|.+|++.|||..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQC-GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTT-SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 34457899999999999999999999997 9999 69999998899999999999999999999999999999
Q ss_pred eCCeeEEEeeCcchhhhh
Q 021890 262 FMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 262 i~g~~l~v~~a~~~~~~~ 279 (306)
|.|+.|+|.|++++....
T Consensus 90 ~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp ETTEECEEECSSCCCCST
T ss_pred cCCCEEEEEECCCCCCCC
Confidence 999999999998866543
No 134
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.9e-19 Score=134.04 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC-CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK-NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+|.|+.++. |.++|||||+|.+.++|++|+ .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3468999999999999999999999999999999998884 899999999999999999999 79999999999999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
..+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 8654
No 135
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=129.74 Aligned_cols=87 Identities=23% Similarity=0.457 Sum_probs=79.9
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 34556899999999999999999999999999999999986 689999999999999999999997 9999999999999
Q ss_pred eecccCCCC
Q 021890 175 YAKIKKKNP 183 (306)
Q Consensus 175 ~~~~~~~~~ 183 (306)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998776543
No 136
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=131.95 Aligned_cols=87 Identities=26% Similarity=0.397 Sum_probs=79.9
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeE--------EEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcc
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVL--------DIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEF 166 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~--------~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~ 166 (306)
.....++|||+|||+++++++|+++|+.||.|. .|+|+.++ +|.++|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 69998885 699999999999999999999999999999
Q ss_pred cCeEEEEeeecccCCC
Q 021890 167 EGRTLKVNYAKIKKKN 182 (306)
Q Consensus 167 ~g~~l~v~~~~~~~~~ 182 (306)
.|+.|+|.++..+...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999886554
No 137
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.1e-18 Score=123.90 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
+.-||||||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+.|+.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 35699999999999999999999999999999975 59999999999999999999999999999999999884
No 138
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.4e-18 Score=130.96 Aligned_cols=85 Identities=22% Similarity=0.372 Sum_probs=74.9
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.+++++ +|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 34456889999999999999999999999999999999987 5999999999999999999999965 699999999999
Q ss_pred eecccCC
Q 021890 175 YAKIKKK 181 (306)
Q Consensus 175 ~~~~~~~ 181 (306)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 139
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=127.11 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc--CCcccCeEEEEee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKVNY 175 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~~g~~l~v~~ 175 (306)
...++|||+|||+.+++++|+++|+.||.|.++.++++ +|||||+|.+.++|.+|++.|+ +..+.|+.|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 34678999999999999999999999999999998865 8999999999999999999774 6789999999999
Q ss_pred ecccCCC
Q 021890 176 AKIKKKN 182 (306)
Q Consensus 176 ~~~~~~~ 182 (306)
+..+...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876554
No 140
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=126.67 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=77.2
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.|..|.++.++. |.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA-GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3457899999999999999999999998 9999999999886 8999999999999999999999999999999999999
Q ss_pred eCcc
Q 021890 271 PSRQ 274 (306)
Q Consensus 271 ~a~~ 274 (306)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9874
No 141
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.9e-18 Score=125.06 Aligned_cols=80 Identities=23% Similarity=0.486 Sum_probs=76.6
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||+|||..+++++|+++|..| |.|..+.++.+..+|.++|||||+|.+.++|.+|+ .|+|..|.|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC-GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG-CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 5789999999999999999999998 99999999999889999999999999999999999 899999999999999997
Q ss_pred ch
Q 021890 274 QF 275 (306)
Q Consensus 274 ~~ 275 (306)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 73
No 142
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.9e-19 Score=133.34 Aligned_cols=85 Identities=27% Similarity=0.412 Sum_probs=79.9
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
..++|||+|||..+++++|+++|..| |.|..|.++.+..+|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV-GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45799999999999999999999997 99999999999999999999999999999999999 89999999999999999
Q ss_pred cchhhhh
Q 021890 273 RQFARLQ 279 (306)
Q Consensus 273 ~~~~~~~ 279 (306)
+++..+.
T Consensus 102 ~~~~~~~ 108 (114)
T 2cq4_A 102 QAEKNRL 108 (114)
T ss_dssp HHHHHHH
T ss_pred CCCccCC
Confidence 8876544
No 143
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.9e-18 Score=126.51 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=77.5
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.|..|.++++.. .++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH-SCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc-CCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456899999999999999999999998 9999999998864 368999999999999999999999999999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
|+++....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99986543
No 144
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=130.92 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=77.7
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHH---HHhhhcCCeEEEEEeecCC----CCcceEEEEEeCCHHHHHHHHHHhcCCcccC
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIR---ALFEQHGTVLDIELSMHSK----NRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~---~~f~~~G~i~~~~~~~~~~----~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 168 (306)
.....++|||+|||+++++++|+ ++|+.||.|.++.|.++.. +.++|||||+|.+.++|++|++.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456889999999999999999 9999999999999988763 3567999999999999999999999999999
Q ss_pred eEEEEeeecccCC
Q 021890 169 RTLKVNYAKIKKK 181 (306)
Q Consensus 169 ~~l~v~~~~~~~~ 181 (306)
+.|+|.|+.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999988764
No 145
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.9e-18 Score=132.22 Aligned_cols=85 Identities=19% Similarity=0.341 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+++++++|+++|+.||.|.+|.+..+.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34678999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred ccCCC
Q 021890 178 IKKKN 182 (306)
Q Consensus 178 ~~~~~ 182 (306)
.....
T Consensus 113 ~~~~~ 117 (124)
T 2kt5_A 113 SQIDL 117 (124)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 75544
No 146
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4.4e-19 Score=131.58 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC--CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS--KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~--~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
...++|||+|||+++++++|+++|+.|| |.+++|+.++ +|+++|||||+|.+.++|.+|+ .|+|..|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4468999999999999999999999999 9999999886 6999999999999999999999 7999999999999999
Q ss_pred ecccC
Q 021890 176 AKIKK 180 (306)
Q Consensus 176 ~~~~~ 180 (306)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98653
No 147
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.4e-18 Score=132.83 Aligned_cols=82 Identities=32% Similarity=0.395 Sum_probs=77.2
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.|..|+++++..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF-GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS-CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456899999999999999999999997 999999999998899999999999999999999999999999999999999
Q ss_pred eCc
Q 021890 271 PSR 273 (306)
Q Consensus 271 ~a~ 273 (306)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 148
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1e-18 Score=133.54 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=76.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT---VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~---i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
....++|||+|||+++++++|+++|+.||. |..|+|+.++.|+++|||||+|.+.++|++||+ +|+..|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345688999999999999999999999999 899999998889999999999999999999999 9999999999999
Q ss_pred eeeccc
Q 021890 174 NYAKIK 179 (306)
Q Consensus 174 ~~~~~~ 179 (306)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998754
No 149
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-19 Score=137.72 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=78.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEE--EEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCC----cccCe
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--IELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESY----EFEGR 169 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~--~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~----~~~g~ 169 (306)
....++|||+|||+++++++|+++|+.||.|.. |+|++++ +|+++|||||+|.+. +|.+|+..|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345678999999999999999999999999976 9999998 799999999999999 999999999999 99999
Q ss_pred EEEEeeecccCCC
Q 021890 170 TLKVNYAKIKKKN 182 (306)
Q Consensus 170 ~l~v~~~~~~~~~ 182 (306)
.|+|.++.+....
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 150
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=125.95 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=76.6
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCC-CccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR-SAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~-~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
.++|||+|||..+++++|+++|.+| |.|..+.++.+..++. ++|||||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY-GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 5789999999999999999999997 9999999999987665 8999999999999999999999999999999999999
Q ss_pred cchh
Q 021890 273 RQFA 276 (306)
Q Consensus 273 ~~~~ 276 (306)
++..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 151
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=128.97 Aligned_cols=88 Identities=22% Similarity=0.378 Sum_probs=81.1
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
...+.++|||+|||+.+++++|+++|.+| |.|..|.++.++.+|.++|||||+|.+.++|.+|++. +|..|+|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQY-GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34457899999999999999999999997 9999999999999999999999999999999999998 999999999999
Q ss_pred eeCcchhhhh
Q 021890 270 APSRQFARLQ 279 (306)
Q Consensus 270 ~~a~~~~~~~ 279 (306)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998866543
No 152
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=131.45 Aligned_cols=88 Identities=26% Similarity=0.366 Sum_probs=80.6
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
...+.++|||+|||+.+++++|+++|.+| |.|..|.|+++..++.++|||||+|.+.++|.+|++.|++ .|.|+.|+|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGF-GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTT-SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34457899999999999999999999997 9999999999999999999999999999999999999998 899999999
Q ss_pred eeCcchhhhh
Q 021890 270 APSRQFARLQ 279 (306)
Q Consensus 270 ~~a~~~~~~~ 279 (306)
.|++...+.+
T Consensus 91 ~~a~~~~~~~ 100 (116)
T 2cqd_A 91 NLAYLGAKPR 100 (116)
T ss_dssp EESTTTCCCC
T ss_pred EEcccCCCcc
Confidence 9998765433
No 153
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=129.95 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCe-E
Q 021890 98 YSKTRLVAQNVPWTS------THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR-T 170 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~------t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~-~ 170 (306)
...++|||+|||+.+ ++++|+++|+.||.|.++.|. ..+|.++|||||+|.+.++|.+|++.|||..|.|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346789999999999 789999999999999999987 45789999999999999999999999999999999 9
Q ss_pred EEEeeeccc
Q 021890 171 LKVNYAKIK 179 (306)
Q Consensus 171 l~v~~~~~~ 179 (306)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 154
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=128.38 Aligned_cols=81 Identities=26% Similarity=0.263 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 45789999999999999999999999999887777765 68999999999999999999999999999999999999987
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
..
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 155
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.2e-19 Score=133.01 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=77.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCe-EEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTV-LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i-~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.| .+|+|+.+++|+++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34456889999999999999999999999999 889999998999999999999999999999996 9999999999999
Q ss_pred eecccC
Q 021890 175 YAKIKK 180 (306)
Q Consensus 175 ~~~~~~ 180 (306)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998654
No 156
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=128.37 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=72.6
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeeEEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ--GKLFMGRPLRV 269 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~--g~~i~g~~l~v 269 (306)
.+..+|||+|||+.+++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|.+|++.|+ |..|.|++|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f-G~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH-CCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346899999999999999999999998 99999999864 7999999999999999999886 47899999999
Q ss_pred eeCcchhhhh
Q 021890 270 APSRQFARLQ 279 (306)
Q Consensus 270 ~~a~~~~~~~ 279 (306)
.||+++....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765443
No 157
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=125.96 Aligned_cols=86 Identities=27% Similarity=0.468 Sum_probs=78.1
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.|..|.++.+.. .++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT-SCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446899999999999999999999997 9999999998864 389999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998866543
No 158
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=129.76 Aligned_cols=82 Identities=28% Similarity=0.543 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+.+++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35789999999999999999999999999999999886 68999999999999999999999999999999999999998
Q ss_pred ccC
Q 021890 178 IKK 180 (306)
Q Consensus 178 ~~~ 180 (306)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 159
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=125.66 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=75.3
Q ss_pred ccceeeecCCChhhhHHHHH----HHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 193 ATFNLFIANLSFEARAKDLR----EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~----~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
...+|||+|||+.+++++|+ ++|.+| |.|.+|.++.+..+ +|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH-GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc-CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 36789999999999999999 999998 99999999988764 89999999999999999999999999999999
Q ss_pred EeeCcchhh
Q 021890 269 VAPSRQFAR 277 (306)
Q Consensus 269 v~~a~~~~~ 277 (306)
|.||++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987554
No 160
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1.8e-18 Score=133.67 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=81.6
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+.+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3446899999999999999999999997 999999999998899999999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
||+++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998766543
No 161
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=130.40 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc--CCcccCeEEEEeee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKVNYA 176 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~~g~~l~v~~~ 176 (306)
+.++|||+|||+.+++++|+++|+.||.|.+++|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|+|.|+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 4578999999999999999999999999999999876 8999999999999999999887 46899999999999
Q ss_pred cccCCCC
Q 021890 177 KIKKKNP 183 (306)
Q Consensus 177 ~~~~~~~ 183 (306)
..+....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8765543
No 162
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=4.1e-18 Score=127.77 Aligned_cols=80 Identities=26% Similarity=0.365 Sum_probs=76.2
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|..| |.|..|.++.+. +|.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346899999999999999999999997 999999999998 899999999999999999999999999999999999999
Q ss_pred Cc
Q 021890 272 SR 273 (306)
Q Consensus 272 a~ 273 (306)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 163
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.9e-18 Score=125.36 Aligned_cols=85 Identities=18% Similarity=0.418 Sum_probs=77.4
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|++|++ ++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34456889999999999999999999999999999999987 59999999999999999999998 5788999999999
Q ss_pred eecccCCC
Q 021890 175 YAKIKKKN 182 (306)
Q Consensus 175 ~~~~~~~~ 182 (306)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99886554
No 164
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=128.42 Aligned_cols=84 Identities=17% Similarity=0.356 Sum_probs=78.4
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP-RRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~t-g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
.+.++|||+|||+.+++++|+++|..| | |..|.|+.+..+ |.++|||||+|.+.++|.+|+ .|+|..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS-C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC-C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 346899999999999999999999997 8 999999999887 999999999999999999999 899999999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
|++++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99886553
No 165
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=131.11 Aligned_cols=85 Identities=25% Similarity=0.407 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|++|++. ++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 345889999999999999999999999999999999986 589999999999999999999996 999999999999999
Q ss_pred cccCCCC
Q 021890 177 KIKKKNP 183 (306)
Q Consensus 177 ~~~~~~~ 183 (306)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8876543
No 166
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=8.3e-19 Score=122.87 Aligned_cols=74 Identities=28% Similarity=0.437 Sum_probs=70.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
+|||+|||+++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|++|++ ++|..++|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999887 69999999999999999999998 9999999999999875
No 167
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=127.35 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~-~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+ +.|+.+.+|+++|||||+|.+.++|++|++. ++..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45688999999999999999999999999987 8888888899999999999999999999996 999999999999998
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
.....
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76543
No 168
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=3.1e-18 Score=132.39 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|++|++.|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 346789999999999999999999999999999999887 7999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
..+...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876544
No 169
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3.5e-18 Score=121.35 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=69.7
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
+..|+|+||++.+++++|+++|.+| |+|.++.+.. ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~-G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH-GPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH-SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh-CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 5679999999999999999999998 9999999864 69999999999999999999999999999999999995
Q ss_pred c
Q 021890 274 Q 274 (306)
Q Consensus 274 ~ 274 (306)
+
T Consensus 80 e 80 (89)
T 2wbr_A 80 E 80 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=126.07 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCC--cccCeEEEEeee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESY--EFEGRTLKVNYA 176 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~--~~~g~~l~v~~~ 176 (306)
+.++|||+|||+.+++++|+++|+.||.|.++.++++ +|||||+|.+.++|.+|++.|++. .+.|+.|+|.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4578999999999999999999999999999998764 899999999999999999988764 599999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
..+...
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 876544
No 171
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=127.85 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=77.8
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
...++|||+|||+.+++++|+++|.+| |.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTS-CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 346889999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred Ccch
Q 021890 272 SRQF 275 (306)
Q Consensus 272 a~~~ 275 (306)
++..
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 172
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=126.29 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=75.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.||.| +++.+.++.++|||||+|.+.++|++|++.|||..|.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3457899999999999999999999999977 5666677899999999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 173
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=4.5e-18 Score=122.65 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=74.4
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|.+| |.|..|.+++++.+|.++|||||+|.+.++|.+|++ ++|..|+|+.|+|.+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF-GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 446899999999999999999999997 999999999999999999999999999999999996 588999999999998
Q ss_pred C
Q 021890 272 S 272 (306)
Q Consensus 272 a 272 (306)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 174
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-19 Score=126.22 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|++|++.|||..++|+.|++.+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45789999999999999999999999999999999886 69999999999999999999999999999999999988764
No 175
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-18 Score=128.80 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=77.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc--------cC
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF--------EG 168 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~--------~g 168 (306)
....++|||+|||+++++++|+++|+.||.|.++.|+.+.+|.++|||||+|.+.++|++|++.|||..| .|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3456889999999999999999999999999999999988899999999999999999999999999999 57
Q ss_pred eEEEEeeeccc
Q 021890 169 RTLKVNYAKIK 179 (306)
Q Consensus 169 ~~l~v~~~~~~ 179 (306)
+.|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998754
No 176
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=4.2e-18 Score=124.11 Aligned_cols=83 Identities=29% Similarity=0.405 Sum_probs=76.9
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||..+++++|+++|.+| |.|..|.+.++ +|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC-GHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT-SCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999997 99999999984 688999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987554
No 177
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=2.4e-19 Score=166.58 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=79.9
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+..+|||+|||+.+++++|.++|..| |.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY-GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346899999999999999999999997 9999999999988999999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987543
No 178
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.3e-18 Score=127.31 Aligned_cols=84 Identities=31% Similarity=0.440 Sum_probs=77.9
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||..+++++|+++|.+| |.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA-GVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 346899999999999999999999997 999999999987 489999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
++....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 976544
No 179
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.5e-18 Score=127.21 Aligned_cols=79 Identities=27% Similarity=0.279 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
.++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 4789999999999999999999999999888887766 689999999999999999999999999999999999998753
No 180
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.5e-18 Score=135.52 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=76.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT---VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~---i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++.|+++|||||+|.+.++|++|++ +|+..|+||.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345688999999999999999999999999 889999999889999999999999999999999 9999999999999
Q ss_pred eeeccc
Q 021890 174 NYAKIK 179 (306)
Q Consensus 174 ~~~~~~ 179 (306)
.++..+
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998654
No 181
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=9.1e-18 Score=134.64 Aligned_cols=84 Identities=21% Similarity=0.367 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87544
No 182
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-19 Score=126.67 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=76.7
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||+.+++++|+++|.+| |.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT-SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46899999999999999999999997 99999999999889999999999999999999999999999999999999886
Q ss_pred cc
Q 021890 273 RQ 274 (306)
Q Consensus 273 ~~ 274 (306)
+.
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 183
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.3e-18 Score=121.90 Aligned_cols=75 Identities=21% Similarity=0.440 Sum_probs=72.0
Q ss_pred eeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 196 ~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+|||+|||+.+++++|+++|++| |.|..+.++.++.+|.++|||||+|.+.++|.+|++ |+|..++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF-GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT-SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999997 999999999998899999999999999999999998 9999999999999986
No 184
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=127.59 Aligned_cols=85 Identities=16% Similarity=0.242 Sum_probs=78.3
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCC-eeEEEEE-ecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeeEE
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWD-VVSAEVI-FHDNPRRSAGYGFVSFKSKKVAETAISAFQ--GKLFMGRPLR 268 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~-v~~v~i~-~~~~tg~~~g~afV~f~~~~~a~~Al~~l~--g~~i~g~~l~ 268 (306)
+.++|||+|||+.+++++|+++|..| |. |..|.++ .+..+|.++|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH-STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh-cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46889999999999999999999998 87 9999998 788889999999999999999999999996 5899999999
Q ss_pred EeeCcchhhh
Q 021890 269 VAPSRQFARL 278 (306)
Q Consensus 269 v~~a~~~~~~ 278 (306)
|.||+++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999886553
No 185
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.5e-18 Score=127.24 Aligned_cols=81 Identities=14% Similarity=0.258 Sum_probs=75.9
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+..+|||+|||+.+++++|+++|.+| |.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGY-QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTS-CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35889999999999999999999997 99999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 021890 273 RQ 274 (306)
Q Consensus 273 ~~ 274 (306)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 186
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=127.17 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEEe-ecC-CCCcceEEEEEeCCHHHHHHHHHHhc--CCcccCeEEEE
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELS-MHS-KNRNRGLAFVTMGSPDEATAALNNLE--SYEFEGRTLKV 173 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~-i~~~~~~-~~~-~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~~g~~l~v 173 (306)
..++|||+|||+++++++|+++|+.||. |.++.++ .+. +|.++|||||+|.+.++|.+|++.|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4578999999999999999999999998 9999987 555 47899999999999999999999996 58999999999
Q ss_pred eeecccCCC
Q 021890 174 NYAKIKKKN 182 (306)
Q Consensus 174 ~~~~~~~~~ 182 (306)
.|+.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999876553
No 187
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=127.57 Aligned_cols=82 Identities=16% Similarity=0.278 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+++++++|+++|+.||.+ +|+|+.+++|+++|||||+|.+.++|++||+ +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 446789999999999999999999999955 9999999899999999999999999999996 79999999999999987
Q ss_pred ccCC
Q 021890 178 IKKK 181 (306)
Q Consensus 178 ~~~~ 181 (306)
....
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 188
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=135.94 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=79.2
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeE--EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVS--AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK----LFMG 264 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~--v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~----~i~g 264 (306)
..+..+|||+|||+.+++++|+++|.+| |.|.. |+|++|..+|.++|||||+|.+. +|.+|+..|||. .|+|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~-G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY-AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG-CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456899999999999999999999998 99976 99999999999999999999999 999999999999 9999
Q ss_pred eeEEEeeCcchhh
Q 021890 265 RPLRVAPSRQFAR 277 (306)
Q Consensus 265 ~~l~v~~a~~~~~ 277 (306)
+.|+|.|+++..+
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988654
No 189
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=3e-18 Score=132.05 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=77.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|++|+ .|+|..|+|+.|+|.+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3446899999999999999999999999999999999986 6999999999999999999999 6999999999999999
Q ss_pred ecccCC
Q 021890 176 AKIKKK 181 (306)
Q Consensus 176 ~~~~~~ 181 (306)
+.....
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 986543
No 190
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=3.8e-18 Score=131.52 Aligned_cols=82 Identities=21% Similarity=0.471 Sum_probs=77.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||+|||..+++++|+++|.+| |.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|+|..|+|+.|+|.|++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSC-GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTT-SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 5789999999999999999999997 99999999999889999999999999999999999 799999999999999998
Q ss_pred chhh
Q 021890 274 QFAR 277 (306)
Q Consensus 274 ~~~~ 277 (306)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 191
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=7.3e-18 Score=132.56 Aligned_cols=81 Identities=28% Similarity=0.474 Sum_probs=75.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
.....++|||+|||+.+++++|+++|+.||.|.+++++.++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33457899999999999999999999999999999999886 68999999999999999999999999999999999999
Q ss_pred ee
Q 021890 175 YA 176 (306)
Q Consensus 175 ~~ 176 (306)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 192
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=6.8e-18 Score=130.12 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=79.9
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
....++|||+|||..+++++|+++|..| |.|..|.++.+. +|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTT-SCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456899999999999999999999997 999999999988 89999999999999999999999999999999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
||.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99876543
No 193
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=121.73 Aligned_cols=79 Identities=32% Similarity=0.538 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|||..++|+.|+|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 346889999999999999999999999999999997 7899999999999999999999999999999999998
Q ss_pred ccCCCC
Q 021890 178 IKKKNP 183 (306)
Q Consensus 178 ~~~~~~ 183 (306)
.+....
T Consensus 79 ~~~~~~ 84 (90)
T 2dnq_A 79 NKSKAS 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 766543
No 194
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=4.2e-18 Score=128.28 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=76.5
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||..+++++|+++|..| |.|..|.++++..+|.++|||||+|.+.++|.+|++.+ |..|+|+.|+|.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcc-CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446899999999999999999999997 99999999999999999999999999999999999975 6999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987654
No 195
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=9.2e-18 Score=134.63 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=80.3
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||..+++++|+++|.+| |.|..|.|+.+..++.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS-GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
|++...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987554
No 196
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=122.14 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
++|||+|||+++++++|+++|+.||.|.++.+.+++ +|.++|||||+|.+.++|++|++.++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999887 59999999999999999999999988 9999999999986
No 197
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=125.54 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=76.4
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|.+| |.|..|.+..+ +.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY-GAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456899999999999999999999998 99999998654 5689999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|+++..+..
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4a_A 95 FPRSGRGTG 103 (109)
T ss_dssp CCCCCCCCC
T ss_pred EcccCCCCC
Confidence 998865543
No 198
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=130.71 Aligned_cols=79 Identities=22% Similarity=0.460 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHH----HHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 100 KTRLVAQNVPWTSTHEDIR----ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~----~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.++|||+|||+.+++++|+ ++|+.||.|.+|.+. .+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 5789999999999999876 699999999998775 3678899999999999999999999999999999999999
Q ss_pred ecccC
Q 021890 176 AKIKK 180 (306)
Q Consensus 176 ~~~~~ 180 (306)
+..+.
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98654
No 199
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=6.9e-19 Score=127.80 Aligned_cols=81 Identities=28% Similarity=0.545 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
++|||+|||+++++++|+++|+.||.|.++.+.+++ +|.++|||||+|.+.+ |.+|+..|||..++|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999999887 5999999999999999 99999999999999999999999876
Q ss_pred CCC
Q 021890 180 KKN 182 (306)
Q Consensus 180 ~~~ 182 (306)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 200
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=8.6e-18 Score=135.03 Aligned_cols=85 Identities=25% Similarity=0.469 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.+++++.++ +|.++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345789999999999999999999999999999999986 6999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.++...
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876543
No 201
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=120.59 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=70.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHh-cCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL-ESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l-~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|++.| +|..++|+.|+|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 345688999999999999999999999999999999864 899999999999999999998 99999999999999
Q ss_pred ec
Q 021890 176 AK 177 (306)
Q Consensus 176 ~~ 177 (306)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 202
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=124.70 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=74.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|++.|+|..|+|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 345689999999999999999999999999999999854 899999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 876543
No 203
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=123.20 Aligned_cols=73 Identities=25% Similarity=0.498 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCe-EEEE
Q 021890 101 TRLVAQNVPWTS------THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGR-TLKV 173 (306)
Q Consensus 101 ~~l~V~nL~~~~------t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~-~l~v 173 (306)
++|||+|||+.+ ++++|+++|+.||.|.++.+. ..+|.++|||||+|.+.++|.+|++.|||..++|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 789999999999999999987 45789999999999999999999999999999999 8876
Q ss_pred e
Q 021890 174 N 174 (306)
Q Consensus 174 ~ 174 (306)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 204
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=121.17 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=72.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3456889999999999999999999999999999997 559999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.+....
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876544
No 205
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=6.5e-18 Score=127.01 Aligned_cols=79 Identities=25% Similarity=0.513 Sum_probs=72.4
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....++|||+|||+++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|||..++|+.|.|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34456899999999999999999999999999999987 79999999999999999999999999999999999
Q ss_pred ecccCC
Q 021890 176 AKIKKK 181 (306)
Q Consensus 176 ~~~~~~ 181 (306)
+.....
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987544
No 206
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.3e-18 Score=126.33 Aligned_cols=76 Identities=25% Similarity=0.489 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+++++++|+++|+.||.|.++++. .++|||||+|.+.++|.+|+..|||..++|+.|+|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 346889999999999999999999999999999997 348999999999999999999999999999999999987
Q ss_pred c
Q 021890 178 I 178 (306)
Q Consensus 178 ~ 178 (306)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 207
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=8.8e-19 Score=129.92 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=75.2
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD-NPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
...++|||+|||..+++++|+++|+.| | |.+|.++++. .+|.++|||||+|.+.++|.+|+ .|+|..|+|+.|+|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSS-C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 446899999999999999999999997 8 9999999988 68999999999999999999999 899999999999999
Q ss_pred eCcchh
Q 021890 271 PSRQFA 276 (306)
Q Consensus 271 ~a~~~~ 276 (306)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998754
No 208
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=121.47 Aligned_cols=79 Identities=28% Similarity=0.528 Sum_probs=72.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.||.|.++.+. ++||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3456889999999999999999999999999999987 559999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.++...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 876554
No 209
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=9.7e-19 Score=127.01 Aligned_cols=82 Identities=26% Similarity=0.553 Sum_probs=73.9
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
++|||+|||..+++++|+++|++| |.|..+.++++..+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|.+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF-GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH-TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 579999999999999999999998 99999999999999999999999999999 9999999999999999999999988
Q ss_pred hhhh
Q 021890 275 FARL 278 (306)
Q Consensus 275 ~~~~ 278 (306)
....
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 210
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=123.02 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc--CeEEEEeee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE--GRTLKVNYA 176 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~--g~~l~v~~~ 176 (306)
..++|||+|||+++++++|+++|+.||.|.++.+..+ +|||||+|.+.++|++|++.|||..+. |+.|+|.|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 4578999999999999999999999999999998754 789999999999999999999999999 999999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
.++.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 211
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=125.24 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=75.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 96 EEYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 96 ~~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.....++|||+|||+.+++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|.+|++.|+|..|+|+.|+|.|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3445689999999999999999999999999999999876 89999999999999999999999999999999999
Q ss_pred ecccCCC
Q 021890 176 AKIKKKN 182 (306)
Q Consensus 176 ~~~~~~~ 182 (306)
+.++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9886554
No 212
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.4e-18 Score=122.05 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=75.5
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
...++|||+|||+.+++++|+++|..| .|..|.++++ .+|.++|||||+|.+.++|.+|+. |+|..|+|+.|+|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 346899999999999999999999996 7999999998 779999999999999999999999 999999999999999
Q ss_pred Ccchh
Q 021890 272 SRQFA 276 (306)
Q Consensus 272 a~~~~ 276 (306)
++++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98753
No 213
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=122.72 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=78.3
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|..| |.|..|.++.+..+|.++|||||+|.+.++|.+|+. ++..|+|+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF-GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc-CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 3446889999999999999999999998 999999999999999999999999999999999998 5889999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
|++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99886553
No 214
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=128.31 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeeccc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIK 179 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~ 179 (306)
..+|||+|||+++++++|+++|+.| .|.+|+|+.++.|+++|||||+|.+.++|++||. +|+..|+||.|.|..+...
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCcc
Confidence 4689999999999999999999999 8899999998889999999999999999999995 9999999999999888654
No 215
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=123.33 Aligned_cols=77 Identities=19% Similarity=0.047 Sum_probs=70.6
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--eCCeeEEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL--FMGRPLRV 269 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~--i~g~~l~v 269 (306)
.++++|||+|||..+++++|+++|.+| |.|.++.+++ .+|+|||+|.+.++|.+|++.|+|.. +.|++|+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 357899999999999999999999998 9999999874 47999999999999999999999875 78999999
Q ss_pred eeCcch
Q 021890 270 APSRQF 275 (306)
Q Consensus 270 ~~a~~~ 275 (306)
.||+.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999864
No 216
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.6e-18 Score=123.53 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3467899999999999999999999999996 566543 678999999999999999999999999999999999998
Q ss_pred ccC
Q 021890 178 IKK 180 (306)
Q Consensus 178 ~~~ 180 (306)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 217
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-18 Score=129.53 Aligned_cols=85 Identities=26% Similarity=0.384 Sum_probs=79.3
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||+.+++++|+++|..| |.|..|.|+.+..+|.++|||||+|.+.++|.+|++. +|..|+|+.|+|.|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQW-GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSS-CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 35789999999999999999999997 9999999999999999999999999999999999997 999999999999999
Q ss_pred cchhhhh
Q 021890 273 RQFARLQ 279 (306)
Q Consensus 273 ~~~~~~~ 279 (306)
+++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8876543
No 218
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=1.6e-17 Score=122.33 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3468899999998 99999999999999999999884 899999999999999999999999999999999998
Q ss_pred ccc
Q 021890 177 KIK 179 (306)
Q Consensus 177 ~~~ 179 (306)
+.+
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 219
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=121.50 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=72.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhc--CCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQH--GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~--G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
....++|||+|||+.+++++|+++|+.| |.|.++.+. +|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456899999999999999999999999 999998875 7899999999999999999999999999999999
Q ss_pred eecccCCC
Q 021890 175 YAKIKKKN 182 (306)
Q Consensus 175 ~~~~~~~~ 182 (306)
|+.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99876654
No 220
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-18 Score=126.77 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcC--CcccCeEEEEe
Q 021890 98 YSKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES--YEFEGRTLKVN 174 (306)
Q Consensus 98 ~~~~~l~V~nL~~~-~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~--~~~~g~~l~v~ 174 (306)
...++|||+|||++ +++++|+++|+.||.|.++.|++ ++|||||+|.+.++|.+|++.|++ ..|.|+.|+|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34688999999998 99999999999999999999974 389999999999999999998864 56999999999
Q ss_pred eecccCCC
Q 021890 175 YAKIKKKN 182 (306)
Q Consensus 175 ~~~~~~~~ 182 (306)
|+..+...
T Consensus 98 ~a~~~~~~ 105 (112)
T 1x4f_A 98 LSEKYKKL 105 (112)
T ss_dssp EECSCSSS
T ss_pred ECcccccc
Confidence 99876554
No 221
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7e-18 Score=127.47 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCccceeeecCCChhhhHHHHH---HHHHhcCCCeeEEEEEecCCCC---CCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 021890 191 PFATFNLFIANLSFEARAKDLR---EFFISEGWDVVSAEVIFHDNPR---RSAGYGFVSFKSKKVAETAISAFQGKLFMG 264 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~---~~F~~~~G~v~~v~i~~~~~tg---~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 264 (306)
.....+|||+|||+.+++++|+ ++|.+| |.|..|.++++..++ .++|||||+|.+.++|.+|++.|||..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~-G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKF-GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTT-SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhcc-CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3446789999999999999999 999997 999999999887644 566999999999999999999999999999
Q ss_pred eeEEEeeCcchh
Q 021890 265 RPLRVAPSRQFA 276 (306)
Q Consensus 265 ~~l~v~~a~~~~ 276 (306)
+.|+|.||.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998865
No 222
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=6.3e-18 Score=127.32 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHG-TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...+|||+|||+++++++|+++|+.|| .|..+.+..+ .++|||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 357899999999999999999999999 8999888532 479999999999999999999999999999999999987
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 223
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=130.40 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=76.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGT---VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~---i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
....++|||+|||+++++++|+++|+.||. |.+|+|+.++.|+++|||||+|.+.++|++|+. +++..|+|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345688999999999999999999999998 899999988889999999999999999999999 9999999999999
Q ss_pred eeeccc
Q 021890 174 NYAKIK 179 (306)
Q Consensus 174 ~~~~~~ 179 (306)
.++..+
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998764
No 224
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5e-18 Score=128.90 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=78.4
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCe-eEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDV-VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v-~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
.+.++|||+|||+.+++++|+++|..| |.| ..|.|+.+. +|.++|||||+|.+.++|.+|++. +|..|+|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 446889999999999999999999997 999 889999998 899999999999999999999986 9999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (114)
T 2cpy_A 90 VVTLEDMRE 98 (114)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 998877544
No 225
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=123.72 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccC-----eEEEE
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG-----RTLKV 173 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g-----~~l~v 173 (306)
..++|||+|||+++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+.|||..|.| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4678999999999999999999999999999999865 899999999999999999999999999 99999
Q ss_pred eeecccCCC
Q 021890 174 NYAKIKKKN 182 (306)
Q Consensus 174 ~~~~~~~~~ 182 (306)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (108)
T 1x4c_A 88 KVDGPRSPS 96 (108)
T ss_dssp EESSCCSCC
T ss_pred EeCCCCCCC
Confidence 999886544
No 226
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=3.3e-18 Score=133.89 Aligned_cols=86 Identities=24% Similarity=0.456 Sum_probs=79.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|++|++.|+|..|.|+.|+|.|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999887 689999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 021890 176 AKIKKKN 182 (306)
Q Consensus 176 ~~~~~~~ 182 (306)
+.+....
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 227
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-18 Score=131.42 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEE-EEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI-ELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~-~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+++++++|+++|+.||.|.++ .+..+.+|+++|||||+|.+.++|++||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345889999999999999999999999999884 44445579999999999999999999999 9999999999999998
Q ss_pred ccc
Q 021890 177 KIK 179 (306)
Q Consensus 177 ~~~ 179 (306)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 228
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=130.23 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=76.4
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|.+| |.|..+.+++++.+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4457899999999999999999999998 999999999998899999999999999999999999999999999999999
Q ss_pred eC
Q 021890 271 PS 272 (306)
Q Consensus 271 ~a 272 (306)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 229
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=125.27 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=77.0
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--------
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF-------- 262 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i-------- 262 (306)
..+.++|||+|||..+++++|+++|..| |.|..|.++.+. +|.++|||||+|.+.++|.+|++.|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF-GQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3446899999999999999999999997 999999999998 899999999999999999999999999999
Q ss_pred CCeeEEEeeCcch
Q 021890 263 MGRPLRVAPSRQF 275 (306)
Q Consensus 263 ~g~~l~v~~a~~~ 275 (306)
.|++|.|.||++.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999864
No 230
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=128.51 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=74.7
Q ss_pred CccceeeecCCChhhhHHHHH----HHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 021890 192 FATFNLFIANLSFEARAKDLR----EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~----~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 267 (306)
.+..+|||+|||+.+++++|+ ++|++| |.|.+|.+.. +|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ-GDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC-CCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 446899999999999999866 799998 9999887743 57899999999999999999999999999999999
Q ss_pred EEeeCcchhhhh
Q 021890 268 RVAPSRQFARLQ 279 (306)
Q Consensus 268 ~v~~a~~~~~~~ 279 (306)
+|.||+.+....
T Consensus 103 ~V~~a~~~~~~~ 114 (127)
T 2a3j_A 103 VITFSETPQSQV 114 (127)
T ss_dssp EEEECCCCCHHH
T ss_pred EEEEccCcchhc
Confidence 999998866543
No 231
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.8e-18 Score=124.44 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=71.8
Q ss_pred CccceeeecCCCh-hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc--eeCCeeEE
Q 021890 192 FATFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK--LFMGRPLR 268 (306)
Q Consensus 192 ~~~~~l~V~nL~~-~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~--~i~g~~l~ 268 (306)
.+..+|||+|||+ .+++++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|++.|+|. .|.|++|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f-G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc-CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 3578999999999 99999999999998 99999999764 589999999999999999999864 59999999
Q ss_pred EeeCcchhhh
Q 021890 269 VAPSRQFARL 278 (306)
Q Consensus 269 v~~a~~~~~~ 278 (306)
|.||+...+.
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999875543
No 232
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-18 Score=120.47 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=72.8
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
++|||+|||..+++++|+++|++| |.|..+.++.++.+|.++|||||+|.+.++|.+|++.++ ..++|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT-SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999997 999999999999899999999999999999999999998 9999999999987
No 233
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=125.83 Aligned_cols=82 Identities=29% Similarity=0.514 Sum_probs=75.8
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
....++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT-CCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc-CCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456899999999999999999999997 999999999885 3489999999999999999999999999999999999
Q ss_pred eCcch
Q 021890 271 PSRQF 275 (306)
Q Consensus 271 ~a~~~ 275 (306)
|++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 234
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=2.2e-17 Score=133.64 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446789999999999999999999999999999999986 6999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
..+...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876543
No 235
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=5.9e-18 Score=124.58 Aligned_cols=81 Identities=26% Similarity=0.483 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIR----ALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~----~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
...++|||+|||+++++++|+ ++|+.||.|.+|.+.. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 346889999999999999999 9999999999998863 4677899999999999999999999999999999999
Q ss_pred eeecccC
Q 021890 174 NYAKIKK 180 (306)
Q Consensus 174 ~~~~~~~ 180 (306)
.|+.++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 236
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=125.25 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=75.4
Q ss_pred ccceeeecCCChhh------hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 021890 193 ATFNLFIANLSFEA------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR- 265 (306)
Q Consensus 193 ~~~~l~V~nL~~~~------t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~- 265 (306)
..++|||+|||+.+ ++++|+++|.+| |.|..|.++ ..+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG-SCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC-CCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 36789999999999 889999999998 999999888 46789999999999999999999999999999998
Q ss_pred eEEEeeCcchhh
Q 021890 266 PLRVAPSRQFAR 277 (306)
Q Consensus 266 ~l~v~~a~~~~~ 277 (306)
.|+|.++....+
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999987654
No 237
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=125.97 Aligned_cols=77 Identities=27% Similarity=0.328 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+.+++++|+++|+.||.|.+|.|.. ++|||||+|.+.++|++|++.|||..|.|+.|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 457899999999999999999999999999998874 488999999999999999999999999999999999976
Q ss_pred cC
Q 021890 179 KK 180 (306)
Q Consensus 179 ~~ 180 (306)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 238
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=121.88 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=71.5
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCceeCCeeEE
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF--QGKLFMGRPLR 268 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l--~g~~i~g~~l~ 268 (306)
..+.++|||+|||+.+++++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|++.| ++..+.|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f-G~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF-GKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3457899999999999999999999997 99999988753 799999999999999999977 46789999999
Q ss_pred EeeCcchhh
Q 021890 269 VAPSRQFAR 277 (306)
Q Consensus 269 v~~a~~~~~ 277 (306)
|.|++.+..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999987544
No 239
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=3.1e-17 Score=122.17 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+++++++|+++|+.||.|.++.++ ++||||+|.+.++|++|++.|++..|.|+.|.|.|+.+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 45889999999999999999999999999999987 67999999999999999999999999999999999987
Q ss_pred cCCCC
Q 021890 179 KKKNP 183 (306)
Q Consensus 179 ~~~~~ 183 (306)
+....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 65543
No 240
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.7e-18 Score=119.51 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=69.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 102 RLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
+|||+|||+++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|++|++ +++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999998886 58999999999999999999999 5999999999999875
No 241
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-18 Score=128.35 Aligned_cols=84 Identities=19% Similarity=0.320 Sum_probs=76.1
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|..| |.|.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..|.|+.|+|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL-FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH-HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346899999999999999999999998 88887 667777788999999999999999999998 999999999999999
Q ss_pred Ccchhhh
Q 021890 272 SRQFARL 278 (306)
Q Consensus 272 a~~~~~~ 278 (306)
++++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876543
No 242
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=7.4e-18 Score=125.28 Aligned_cols=82 Identities=17% Similarity=0.328 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+++++++|+++|+.||.|.++.++.+++|.++|||||+|.+.++|++|++ ++..++|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4578999999999999999999999999999999999889999999999999999999998 99999999999999987
Q ss_pred cCCC
Q 021890 179 KKKN 182 (306)
Q Consensus 179 ~~~~ 182 (306)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 6543
No 243
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=123.41 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=71.4
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc--eeCCeeEEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK--LFMGRPLRV 269 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~--~i~g~~l~v 269 (306)
.+.++|||+|||+.+++++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|++.|+|. .|.|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f-G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKF-GTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTT-SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 457899999999999999999999997 99999988752 799999999999999999988764 599999999
Q ss_pred eeCcchhhh
Q 021890 270 APSRQFARL 278 (306)
Q Consensus 270 ~~a~~~~~~ 278 (306)
.|++.+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999876543
No 244
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=121.38 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=74.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+++++++|+++|+.|+ .+.++.++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568899999999999999999999774 56677776 689999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 021890 176 AKIKKKN 182 (306)
Q Consensus 176 ~~~~~~~ 182 (306)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9886654
No 245
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.9e-18 Score=129.49 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCe----EEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTV----LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i----~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
....+|||+|||+++|+++|+++|+.||.| .+|.|+.+.+|+++|||||+|.+.++|++||+. |+..|+||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456889999999999999999999999975 689999888899999999999999999999995 999999999999
Q ss_pred eeeccc
Q 021890 174 NYAKIK 179 (306)
Q Consensus 174 ~~~~~~ 179 (306)
..+..+
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887653
No 246
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=9.3e-18 Score=123.29 Aligned_cols=81 Identities=20% Similarity=0.418 Sum_probs=72.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+.+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3456889999999999999999999999988655 446888999999999999999999999999999999999999
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87654
No 247
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=1.1e-17 Score=142.61 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC--CeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHG--TVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G--~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
..++|||+||++++++++|+++|+.|| .|.+|+|+.++ +|+++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999997 799999999999999999999999999999999999999
Q ss_pred eccc
Q 021890 176 AKIK 179 (306)
Q Consensus 176 ~~~~ 179 (306)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 248
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=125.83 Aligned_cols=80 Identities=11% Similarity=0.196 Sum_probs=72.3
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeeEEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG--KLFMGRPLRV 269 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g--~~i~g~~l~v 269 (306)
.+.++|||+|||+.+++++|+++|++| |.|.+|.++++ +|||||+|.+.++|.+|++.|++ ..|.|+.|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~f-G~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTT-SCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346899999999999999999999997 99999999864 79999999999999999999884 6899999999
Q ss_pred eeCcchhhh
Q 021890 270 APSRQFARL 278 (306)
Q Consensus 270 ~~a~~~~~~ 278 (306)
.||+++...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999875543
No 249
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=118.68 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=72.9
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||..+++++|+++|.+| |.|..|.++ +|||||+|.+.++|.+|++.|+|..|.|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY-GKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS-SCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 347899999999999999999999997 999999887 68999999999999999999999999999999999
Q ss_pred Ccchhhhh
Q 021890 272 SRQFARLQ 279 (306)
Q Consensus 272 a~~~~~~~ 279 (306)
++++.+..
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 250
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=122.69 Aligned_cols=82 Identities=24% Similarity=0.348 Sum_probs=73.9
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.| .++.+ .+|.++|||||+|.+.++|.+|+..|+|..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA-TFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC-SEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 3457899999999999999999999997 876 56665 678999999999999999999999999999999999999
Q ss_pred eCcchhh
Q 021890 271 PSRQFAR 277 (306)
Q Consensus 271 ~a~~~~~ 277 (306)
|++++.+
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9988654
No 251
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-18 Score=128.24 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=74.7
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||..+++++|+++|..| |.|..+.+..+..+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF-QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH-HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346899999999999999999999998 8884433332223688999999999999999999999999999999999999
Q ss_pred Ccchhhhh
Q 021890 272 SRQFARLQ 279 (306)
Q Consensus 272 a~~~~~~~ 279 (306)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98866544
No 252
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=121.98 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=76.1
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|..| + .|.++.+..++.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS-V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC-S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC-e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3457899999999999999999999965 3 67888888889999999999999999999999999999999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
|++++.+.
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99886654
No 253
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=124.87 Aligned_cols=82 Identities=26% Similarity=0.410 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCe----EEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTV----LDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i----~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
..++|||+|||+++++++|+++|+.||.| ..+.+. +|.++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45889999999999999999999999998 444444 78889999999999999999999999999999999999
Q ss_pred eecccCCCC
Q 021890 175 YAKIKKKNP 183 (306)
Q Consensus 175 ~~~~~~~~~ 183 (306)
|+..+....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 998876543
No 254
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=4.2e-17 Score=123.91 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=75.6
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||..+++++|+++|..| |.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46899999999999999999999997 99999999875 456999999999999999999999999999999999999
Q ss_pred cchhhh
Q 021890 273 RQFARL 278 (306)
Q Consensus 273 ~~~~~~ 278 (306)
++....
T Consensus 83 ~~~~~~ 88 (115)
T 3lqv_A 83 NANRAF 88 (115)
T ss_dssp CHHHHT
T ss_pred cCChhh
Confidence 876654
No 255
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-17 Score=127.36 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=76.2
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCC---eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWD---VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~---v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
...++|||+|||+.+++++|+++|..| |. |..|+|+++.. |+++|||||+|.+.++|.+|++ |+|..|+|+.|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC-TIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS-CBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc-CCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346889999999999999999999997 88 89999999887 9999999999999999999999 999999999999
Q ss_pred EeeCcchh
Q 021890 269 VAPSRQFA 276 (306)
Q Consensus 269 v~~a~~~~ 276 (306)
|.++....
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987655
No 256
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-18 Score=127.54 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+++++++|+++|+.||.|.. .++.+. +|.++|||||+|.+.++|++|++ |||..|.|+.|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4578999999999999999999999999887 444554 68899999999999999999999 99999999999999998
Q ss_pred ccCCC
Q 021890 178 IKKKN 182 (306)
Q Consensus 178 ~~~~~ 182 (306)
++...
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76543
No 257
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.2e-17 Score=130.50 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=76.8
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCC---eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWD---VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~---v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
...++|||+|||+.+++++|+++|+.| |. |..|.|++|.. |+++|||||+|.+.++|.+|++ |+|..|+||.|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~-G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDC-TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTC-CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 346889999999999999999999997 88 89999999987 9999999999999999999999 999999999999
Q ss_pred EeeCcchhh
Q 021890 269 VAPSRQFAR 277 (306)
Q Consensus 269 v~~a~~~~~ 277 (306)
|.++.++..
T Consensus 119 V~~a~~~e~ 127 (136)
T 2hgl_A 119 VFKSHRTEM 127 (136)
T ss_dssp EEECCHHHH
T ss_pred EEECChHHH
Confidence 999876543
No 258
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.3e-17 Score=128.33 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeE--EEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVL--DIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~--~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
...++|||+|||+++++++|+++|+.| .|+ +|+|+.++.|+++|||||+|.+.++|++||+ +++..|+||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 456789999999999999999999999 566 8999988889999999999999999999999 588999999999998
Q ss_pred eccc
Q 021890 176 AKIK 179 (306)
Q Consensus 176 ~~~~ 179 (306)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 259
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=122.52 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=73.9
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
..++|||+|||..+++++|+++|.+| |.|..|.++.+ +|||||+|.+.++|.+|+..|+|..|+|+.|+|.|+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPF-GQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHH-SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 46799999999999999999999998 99999999864 789999999999999999999999999999999999
Q ss_pred cchhhhh
Q 021890 273 RQFARLQ 279 (306)
Q Consensus 273 ~~~~~~~ 279 (306)
++.....
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8866543
No 260
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.6e-17 Score=141.57 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=78.1
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCC--CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGW--DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G--~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.++|||+||++.+++++|+++|..| | .|.+|+|++|..+|+++|||||+|.+.++|.+||+.|||..|.|+.|+|.|
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~-G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSL-GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTT-TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHH-CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 5789999999999999999999997 9 999999999999999999999999999999999999999999999999999
Q ss_pred Ccchh
Q 021890 272 SRQFA 276 (306)
Q Consensus 272 a~~~~ 276 (306)
|++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98765
No 261
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.6e-17 Score=121.02 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPW-TSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
.+.++|||+|||+ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|++|++.|+|..+.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4568899999998 99999999999999999999985 799999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
......
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 876543
No 262
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8e-18 Score=129.75 Aligned_cols=83 Identities=24% Similarity=0.321 Sum_probs=76.7
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
...++|||+|||+.+++++|+++|..| |.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|+|.+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKL-DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSS-CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 346899999999999999999999997 999987777777889999999999999999999999 999999999999999
Q ss_pred Ccchh
Q 021890 272 SRQFA 276 (306)
Q Consensus 272 a~~~~ 276 (306)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 263
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=7.5e-18 Score=117.92 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=71.5
Q ss_pred eeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 196 NLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 196 ~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+|||+|||..+++++|+++|++| |.|..+.++.++.+|.++|||||+|.+.++|.+|++ ++|..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF-GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH-SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999998 999999999999999999999999999999999998 4999999999999886
No 264
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.3e-17 Score=122.73 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=76.1
Q ss_pred CccceeeecCCChhhhHHHHH----HHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 021890 192 FATFNLFIANLSFEARAKDLR----EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~----~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 267 (306)
.+.++|||+|||..+++++|+ ++|.+| |.|..|.+.. +|.++|||||+|.+.++|.+|+..|+|..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~-G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF-GQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG-SCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 347899999999999999999 999998 9999998863 47789999999999999999999999999999999
Q ss_pred EEeeCcchhhhh
Q 021890 268 RVAPSRQFARLQ 279 (306)
Q Consensus 268 ~v~~a~~~~~~~ 279 (306)
+|.|+++.....
T Consensus 82 ~v~~a~~~~~~~ 93 (97)
T 1nu4_A 82 RIQYAKTDSDII 93 (97)
T ss_dssp EEEECSSCCTHH
T ss_pred EEEEccCCCccc
Confidence 999998866543
No 265
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=122.39 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=74.2
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeE-EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVS-AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~-v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
....+|||+|||+.+++++|+++|..| |.|.. |.|+.+ .+|+++|||||+|.+.++|.+|+.. +|..|+||.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGL-EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTC-CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346899999999999999999999997 89987 888887 7899999999999999999999997 9999999999999
Q ss_pred eCcch
Q 021890 271 PSRQF 275 (306)
Q Consensus 271 ~a~~~ 275 (306)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98653
No 266
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=5.8e-17 Score=124.70 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=83.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeCC--eeEEEe
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY-GFVSFKSKKVAETAISAFQGKLFMG--RPLRVA 270 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~-afV~f~~~~~a~~Al~~l~g~~i~g--~~l~v~ 270 (306)
-..|||+||++.+++++|+++|.+| |.|.+|.+..+ .+|+ |||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~y-G~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTS-SCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCc-CCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4678899999999999999999998 99999988764 2577 9999999999999999999999988 999999
Q ss_pred eCcchhh-hhccccCCCCCCccccccCc
Q 021890 271 PSRQFAR-LQTKEGLHSDETSDDLNINA 297 (306)
Q Consensus 271 ~a~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (306)
||++..- ...++...-|.|..+||...
T Consensus 102 ~ak~~~l~v~~n~~~srDyt~~~lp~~~ 129 (130)
T 3zzy_A 102 FSKLTSLNVKYNNDKSRDYTRPDLPSGD 129 (130)
T ss_dssp ECSCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred ecCCCceeEEecCCCcccCCCCCCCCCC
Confidence 9988653 33455566678888887653
No 267
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=118.92 Aligned_cols=78 Identities=27% Similarity=0.388 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcC-CcccCeEEEEeee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGT-VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES-YEFEGRTLKVNYA 176 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~-i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~-~~~~g~~l~v~~~ 176 (306)
..++|||+|||+++++++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|+.|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4578999999999999999999999999 6655553 389999999999999999999999 9999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.++...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 876554
No 268
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=123.73 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=74.6
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
....++|||+|||+.+++++|+++|..| |. ..|.|++++ +|+++|||||+|.+.++|.+|++ +|+..|+||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPL-NP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSC-CC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc-Cc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3446899999999999999999999997 84 599999997 79999999999999999999995 79999999999999
Q ss_pred eCcchhh
Q 021890 271 PSRQFAR 277 (306)
Q Consensus 271 ~a~~~~~ 277 (306)
++.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 269
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.9e-17 Score=123.67 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=70.6
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
.++|||+|||+.+++++|+++|.+| | .|..+.+.. +.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~-G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLAREN-SLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHH-TCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHh-CCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 5789999999999999999999998 9 899998853 247999999999999999999999999999999999999
Q ss_pred cchh
Q 021890 273 RQFA 276 (306)
Q Consensus 273 ~~~~ 276 (306)
+...
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7643
No 270
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-17 Score=121.05 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=72.6
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-----eeE
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG-----RPL 267 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-----~~l 267 (306)
..++|||+|||+.+++++|+++|.+| |.|..|.|+.+ |||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA-GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 46899999999999999999999997 99999999875 899999999999999999999999999 999
Q ss_pred EEeeCcchhhh
Q 021890 268 RVAPSRQFARL 278 (306)
Q Consensus 268 ~v~~a~~~~~~ 278 (306)
+|.+++++.+.
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999886543
No 271
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4e-17 Score=121.09 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=70.9
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
..++|||+|||..+++++|+++|.+| |.|.++++. .++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF-GFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT-SCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC-CCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 35789999999999999999999997 999999987 35899999999999999999999999999999999999
Q ss_pred cch
Q 021890 273 RQF 275 (306)
Q Consensus 273 ~~~ 275 (306)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 272
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.8e-17 Score=118.95 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=71.4
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
...++|||+|||+.+++++|+++|.+| |.|. +.++.+ .++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~-G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL-GSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT-TCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc-CCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999997 8987 666653 5789999999999999999999999999999999999
Q ss_pred Ccchh
Q 021890 272 SRQFA 276 (306)
Q Consensus 272 a~~~~ 276 (306)
++++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 273
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=117.24 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+++++++|+++|+.||.|.+| +....+|. ||||+|.+.++|++|+. |+|..|+|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 45789999999999999999999999999987 33333454 99999999999999999 999999999999999876
Q ss_pred cCCC
Q 021890 179 KKKN 182 (306)
Q Consensus 179 ~~~~ 182 (306)
+...
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5543
No 274
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=6e-17 Score=129.29 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=83.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eeEEEee
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG--RPLRVAP 271 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g--~~l~v~~ 271 (306)
..+|||+||++.+++++|+++|++| |.|.+|.|..+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4679999999999999999999998 99999998753 257899999999999999999999999965 9999999
Q ss_pred Ccchhh-hhccccCCCCCCccccccCcccc
Q 021890 272 SRQFAR-LQTKEGLHSDETSDDLNINAEEA 300 (306)
Q Consensus 272 a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (306)
++++.- .+.++....+.|...++.+..++
T Consensus 121 Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~ 150 (164)
T 1sjr_A 121 SKLTSLNVKYNNDKSRDYTRPDLPSGDSQP 150 (164)
T ss_dssp CSSSSCCCCCCSSSEEESSCSCCCCCC---
T ss_pred ecCCcccccccCCCCccccCCCCCCCCCCC
Confidence 998752 22344455567777777766543
No 275
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=5.1e-17 Score=122.09 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=72.1
Q ss_pred CCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 190 KPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
...+.++|||+|||..+++++|+++|.+| |.|..|.++ +|||||+|.+.++|.+|++.|+|..|+|+.|+|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPF-GPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTT-SCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34457899999999999999999999997 999999987 689999999999999999999999999999999
Q ss_pred eeCcchhhh
Q 021890 270 APSRQFARL 278 (306)
Q Consensus 270 ~~a~~~~~~ 278 (306)
.|+++..++
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999886543
No 276
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=120.02 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=72.3
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC--CeeEEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM--GRPLRV 269 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~--g~~l~v 269 (306)
.+.++|||+|||..+++++|+++|.+| |.|..|.+..+ +|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRF-GSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTT-SCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 446899999999999999999999997 99999988743 789999999999999999999999999 999999
Q ss_pred eeCcchhh
Q 021890 270 APSRQFAR 277 (306)
Q Consensus 270 ~~a~~~~~ 277 (306)
.|++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99988643
No 277
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=118.77 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=67.6
Q ss_pred ceeeecCCChhh------hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-eE
Q 021890 195 FNLFIANLSFEA------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGR-PL 267 (306)
Q Consensus 195 ~~l~V~nL~~~~------t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~-~l 267 (306)
++|||+|||..+ ++++|+++|.+| |.|..|.+. +.+|.++|||||+|.+.++|.+|++.|||..|+|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT-CCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc-CCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 579999999999 889999999997 999999887 46789999999999999999999999999999999 88
Q ss_pred EEe
Q 021890 268 RVA 270 (306)
Q Consensus 268 ~v~ 270 (306)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 873
No 278
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=122.03 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=73.5
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
++|||+|||..+++++|+++|++| |.|..|.++.+ ++|||||+|.+.++|.+|++.|+|..++|+.|+|.|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY-GPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH-CCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 379999999999999999999998 99999999876 689999999999999999999999999999999999988
Q ss_pred hhhhh
Q 021890 275 FARLQ 279 (306)
Q Consensus 275 ~~~~~ 279 (306)
..+..
T Consensus 75 ~~~~~ 79 (101)
T 2hvz_A 75 MPRRS 79 (101)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 76543
No 279
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=8.4e-17 Score=118.49 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=70.9
Q ss_pred CCccceeeecCCCh-hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 191 PFATFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 191 ~~~~~~l~V~nL~~-~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
..+.++|||+|||. .+++++|+++|..| |.|..+.+. +|||||+|.+.++|.+|+..|+|..++|+.|+|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG-SCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34578999999998 99999999999998 999999882 789999999999999999999999999999999
Q ss_pred eeCcchh
Q 021890 270 APSRQFA 276 (306)
Q Consensus 270 ~~a~~~~ 276 (306)
.|++...
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9998754
No 280
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.8e-17 Score=114.98 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeeEEE
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAF-QGKLFMGRPLRV 269 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l-~g~~i~g~~l~v 269 (306)
..+.++|||+|||..+++++|+++|.+| |.|..|.+++ ++|||||+|.+.++|.+|++.| +|..++|+.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~-G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF-GEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT-SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC-CCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456899999999999999999999997 9999999986 3799999999999999999998 999999999999
Q ss_pred eeCc
Q 021890 270 APSR 273 (306)
Q Consensus 270 ~~a~ 273 (306)
.||+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 281
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=117.08 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|++| |.|..|.++ ++||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY-GPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT-SCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3447899999999999999999999997 999999886 3499999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++++.+..
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 998876544
No 282
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=121.68 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=73.9
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
...+|||+|||+.+++++|+++|+.| .|..|.|+.|.. |+++|||||+|.+.++|.+|+ .|||..|+||.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35789999999999999999999996 789999999876 999999999999999999999 58999999999999998
Q ss_pred cchh
Q 021890 273 RQFA 276 (306)
Q Consensus 273 ~~~~ 276 (306)
.+..
T Consensus 91 ~~~~ 94 (109)
T 2dnn_A 91 TERQ 94 (109)
T ss_dssp CHHH
T ss_pred Cccc
Confidence 7654
No 283
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=5.7e-17 Score=129.11 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=74.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.||.|.+++++++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345689999999999999999999999999999999876 5899999999999999999999999999999999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 284
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=7.2e-18 Score=132.12 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=74.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|||+++++++|+++|+.|| |++|.|+.+++|+++|||||+|.+.++|++|| .+|+..|+|+.|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34567899999999999999999999999 66999999888999999999999999999999 58999999999999988
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 285
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.5e-16 Score=118.37 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=72.2
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|.+| |.|..|.++ ++||||+|.+.++|.+|++.|+|..|.|+.|+|.|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF-GKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH-SCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 346889999999999999999999998 999999886 46999999999999999999999999999999999
Q ss_pred Ccchhhhh
Q 021890 272 SRQFARLQ 279 (306)
Q Consensus 272 a~~~~~~~ 279 (306)
++++....
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 98876544
No 286
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=8.5e-17 Score=121.23 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~-~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||++ +++++|+++|+.||.|.+|.+ ++|||||+|.+.++|++|++.|+|..|+|+.|+|.++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3478999999999 999999999999999999988 38999999999999999999999999999999999998
Q ss_pred ccCC
Q 021890 178 IKKK 181 (306)
Q Consensus 178 ~~~~ 181 (306)
....
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 287
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-18 Score=132.48 Aligned_cols=86 Identities=21% Similarity=0.331 Sum_probs=80.5
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeE--------EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVS--------AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG 264 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~--------v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 264 (306)
+.++|||+|||..+++++|+++|.+| |.|.. |.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQI-GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46889999999999999999999997 99998 8999998889999999999999999999999999999999
Q ss_pred eeEEEeeCcchhhhh
Q 021890 265 RPLRVAPSRQFARLQ 279 (306)
Q Consensus 265 ~~l~v~~a~~~~~~~ 279 (306)
+.|+|.|++++....
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 NPIKVSFATRRADFN 99 (116)
Confidence 999999998876654
No 288
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1e-17 Score=125.67 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=76.8
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCC---eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWD---VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPL 267 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~---v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 267 (306)
....++|||+|||+.+++++|+++|..| |. |..|.|+.+.. |.++|||||+|.+.++|.+|+. |+|..|+|+.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDC-RIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTS-CBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhc-CCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3446889999999999999999999996 77 89999999987 9999999999999999999999 99999999999
Q ss_pred EEeeCcchh
Q 021890 268 RVAPSRQFA 276 (306)
Q Consensus 268 ~v~~a~~~~ 276 (306)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999998755
No 289
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-17 Score=121.21 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=73.2
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||..+++++|+++|..| |.|..+ ..+|.++|||||+|.+.++|.+|+..|+|..|+|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~-g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA-LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE-EEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457899999999999999999999997 888665 3458899999999999999999999999999999999999
Q ss_pred eCcchhhh
Q 021890 271 PSRQFARL 278 (306)
Q Consensus 271 ~a~~~~~~ 278 (306)
|++++.+.
T Consensus 87 ~a~~~~~~ 94 (96)
T 1fjc_A 87 YTGEKGGT 94 (96)
T ss_dssp ECSSSCCC
T ss_pred EcCCCCCC
Confidence 99886543
No 290
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=5.4e-17 Score=132.74 Aligned_cols=84 Identities=19% Similarity=0.357 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+.+++++|+++|+.||.|.+|.|..+.+|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 44689999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred ccCC
Q 021890 178 IKKK 181 (306)
Q Consensus 178 ~~~~ 181 (306)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6543
No 291
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=116.05 Aligned_cols=77 Identities=26% Similarity=0.459 Sum_probs=71.1
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|++| |.|..|.++ ++||||+|.+.++|.+|++.|+|..|+|+.|+|.|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR-GRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH-SCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC-CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346889999999999999999999998 999999886 34999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
+++..+
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988654
No 292
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=5e-17 Score=122.51 Aligned_cols=96 Identities=23% Similarity=0.398 Sum_probs=78.7
Q ss_pred cCeEEEEeeecccCCCCCCCCCCCCCccceeeecCCChh-hhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeC
Q 021890 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFK 245 (306)
Q Consensus 167 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~ 245 (306)
.|..|.+..+....... .....++|||+|||+. +++++|+++|.+| |.|..|.+ ++|||||+|.
T Consensus 6 ~g~~~~~~~s~~~~~~~------~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~-G~v~~v~i--------~~g~afV~f~ 70 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND------PKSINSRVFIGNLNTALVKKSDVETIFSKY-GRVAGCSV--------HKGYAFVQYS 70 (110)
T ss_dssp CSCCCCCCCCCSCCSCC------CTTCSSEEEECSCCCSSCCHHHHHHHHGGG-SCCSEEEE--------ETTEEEEECS
T ss_pred CCcccccccCCCCCCCC------CCCCCcEEEEeCCCcccCCHHHHHHHHHhC-CCeEEEEE--------eCCEEEEEEC
Confidence 45556665554432221 1223579999999999 9999999999998 99999988 4799999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 246 SKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 246 ~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
+.++|.+|++.|+|..|+|+.|+|.|+++...
T Consensus 71 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 71 NERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp SSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999999986544
No 293
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.9e-17 Score=121.50 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=69.9
Q ss_pred CCCeEEE--cCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc-----cCeEE
Q 021890 99 SKTRLVA--QNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF-----EGRTL 171 (306)
Q Consensus 99 ~~~~l~V--~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~-----~g~~l 171 (306)
+.++||| |||++++++++|+++|++||.|.++.|..+ +|||||+|.+.++|++|++.|||..+ .|+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 3578999 889999999999999999999999987643 79999999999999999999999988 78999
Q ss_pred EEeeecccCC
Q 021890 172 KVNYAKIKKK 181 (306)
Q Consensus 172 ~v~~~~~~~~ 181 (306)
.|.|+.....
T Consensus 99 ~v~~a~~~p~ 108 (114)
T 2cq2_A 99 YLNFVEKVQW 108 (114)
T ss_dssp EEEEESCCCC
T ss_pred EEEecccCcc
Confidence 9999875443
No 294
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-18 Score=131.95 Aligned_cols=85 Identities=25% Similarity=0.377 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEE--------EEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccC
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLD--------IELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~--------~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 168 (306)
.+.++|||+|||+++++++|+++|+.||.|.. +.++.++ +|.++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45678999999999999999999999999998 8888885 58999999999999999999999999999999
Q ss_pred eEEEEeeecccCCC
Q 021890 169 RTLKVNYAKIKKKN 182 (306)
Q Consensus 169 ~~l~v~~~~~~~~~ 182 (306)
+.|+|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876554
No 295
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=123.39 Aligned_cols=77 Identities=16% Similarity=0.010 Sum_probs=70.8
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||+|||+.+++++|+++|.+| |.|..|.++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.||+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRF-GSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5789999999999999999999997 9999998763 57899999999999999999999999999999999997
Q ss_pred chhh
Q 021890 274 QFAR 277 (306)
Q Consensus 274 ~~~~ 277 (306)
...-
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6443
No 296
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-16 Score=116.00 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=71.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
....++|||+|| ++++++|+++|+.||.|.+|.|. .++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 345689999996 99999999999999999999985 45899999999999999999999999999999999999
Q ss_pred cccCCC
Q 021890 177 KIKKKN 182 (306)
Q Consensus 177 ~~~~~~ 182 (306)
.++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876544
No 297
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=1.7e-16 Score=122.08 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceE-EEEEeCCHHHHHHHHHHhcCCcccC--eEEEEeee
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL-AFVTMGSPDEATAALNNLESYEFEG--RTLKVNYA 176 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~-afV~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~~ 176 (306)
.-.|||+||++.+|+++|+++|+.||.|.+|++..+. +|| |||+|.+.++|++|++.|||..|.| +.|+|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 4568899999999999999999999999999887642 677 9999999999999999999999988 99999999
Q ss_pred cccC
Q 021890 177 KIKK 180 (306)
Q Consensus 177 ~~~~ 180 (306)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 298
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.2e-17 Score=118.66 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=73.2
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|||+.+++++|+++|.+| |.|..|.+.+ .+|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKY-GKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT-CCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc-CCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456899999999999999999999997 9999999874 37999999999999999999999999999999999
Q ss_pred eCcchhh
Q 021890 271 PSRQFAR 277 (306)
Q Consensus 271 ~a~~~~~ 277 (306)
|++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9988654
No 299
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=7.2e-17 Score=116.60 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+++++++|+++|+.| .|.++++. .++|||||+|.+.++|++|++.|||..++|+.|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45789999999999999999999999 99999884 5699999999999999999999999999999999999865
Q ss_pred c
Q 021890 179 K 179 (306)
Q Consensus 179 ~ 179 (306)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 300
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.5e-16 Score=134.19 Aligned_cols=85 Identities=26% Similarity=0.364 Sum_probs=79.7
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||+++++++|+++|++| |.|.+|+|++|..+|+++|||||+|.+.++|.+|++.|+|..+.|+.|++.++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPA-GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhh-CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46899999999999999999999998 99999999999999999999999999999999999999999999999999998
Q ss_pred cchhhh
Q 021890 273 RQFARL 278 (306)
Q Consensus 273 ~~~~~~ 278 (306)
......
T Consensus 93 ~~~~~~ 98 (213)
T 4f02_A 93 QRDPSL 98 (213)
T ss_dssp CCCTHH
T ss_pred cccccc
Confidence 776543
No 301
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.8e-17 Score=122.71 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=73.5
Q ss_pred ceeeecCC----ChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCC----HHH----HHHHHH--HhCCc
Q 021890 195 FNLFIANL----SFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS----KKV----AETAIS--AFQGK 260 (306)
Q Consensus 195 ~~l~V~nL----~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~----~~~----a~~Al~--~l~g~ 260 (306)
..|||+|| |+.+++++|+++|..| |+|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f-GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY-GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT-SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 9999999999999997 999999999999999999999999996 333 788988 78999
Q ss_pred eeCCeeEEEeeCcchhh
Q 021890 261 LFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 261 ~i~g~~l~v~~a~~~~~ 277 (306)
.|+|+.|+|.+-+....
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999999766544
No 302
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.6e-16 Score=126.85 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccC--eEEEEeeec
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG--RTLKVNYAK 177 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~~~ 177 (306)
..+|||+||++.+++++|+++|+.||.|.+|.|..+ .++|||||+|.+.++|++|++.|||..|.| +.|+|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 356999999999999999999999999999998654 257899999999999999999999999965 999999998
Q ss_pred ccC
Q 021890 178 IKK 180 (306)
Q Consensus 178 ~~~ 180 (306)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 303
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.2e-17 Score=130.95 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=74.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCC
Q 021890 142 GLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWD 221 (306)
Q Consensus 142 g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~ 221 (306)
|+||.+|...+.+-.++..+... +.|...--..... .........++|||+|||+++++++|+++|++| |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~-------~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~-G- 71 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS-------EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL-N- 71 (139)
T ss_dssp ---------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSC-C-
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCc-------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc-C-
Confidence 67888888887777666643322 2332221111100 011122335789999999999999999999997 8
Q ss_pred eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 222 VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 222 v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
|..|.|++|+. |+++|||||+|.+.++|.+|+ .+++..|+||.|+|.++.+...
T Consensus 72 i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 72 PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 77999999976 999999999999999999999 6899999999999999876543
No 304
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=4.1e-17 Score=121.21 Aligned_cols=82 Identities=23% Similarity=0.418 Sum_probs=75.7
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
..++|||+|||+.+++++|+++|..| |.|..|.++.+. +|.++|||||+|.+.++|.+|+. +|..++|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY-GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 46889999999999999999999998 999999999998 89999999999999999999998 999999999999998
Q ss_pred cchhhh
Q 021890 273 RQFARL 278 (306)
Q Consensus 273 ~~~~~~ 278 (306)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 876543
No 305
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.3e-17 Score=118.55 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=71.1
Q ss_pred CccceeeecCCCh-hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 192 FATFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 192 ~~~~~l~V~nL~~-~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
.+.++|||+|||+ .+++++|+++|.+| |.|..|.+. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT-CCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3478999999998 99999999999997 999999884 7899999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|+++..+..
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998766544
No 306
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.1e-17 Score=122.61 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=72.4
Q ss_pred CCccceeeecCCChh-hhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeeE
Q 021890 191 PFATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG--KLFMGRPL 267 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~-~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g--~~i~g~~l 267 (306)
..+.++|||+|||+. +++++|+++|++| |.|.+|.+++ ++|||||+|.+.++|.+|++.|++ ..|.|+.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f-G~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY-GKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT-SCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc-CCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 345789999999998 9999999999998 9999999863 479999999999999999998864 56999999
Q ss_pred EEeeCcchhhhh
Q 021890 268 RVAPSRQFARLQ 279 (306)
Q Consensus 268 ~v~~a~~~~~~~ 279 (306)
+|.||+.+.+..
T Consensus 95 ~V~~a~~~~~~~ 106 (112)
T 1x4f_A 95 KVDLSEKYKKLV 106 (112)
T ss_dssp EEEEECSCSSSS
T ss_pred EEEECccccccc
Confidence 999998766544
No 307
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=5.8e-17 Score=128.04 Aligned_cols=84 Identities=18% Similarity=0.355 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEE------EEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDI------ELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~------~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 171 (306)
...++|||+|||+++++++|+++|+.||.|..+ .+....+|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345789999999999999999999999998764 12222468899999999999999999999999999999999
Q ss_pred EEeeecccCC
Q 021890 172 KVNYAKIKKK 181 (306)
Q Consensus 172 ~v~~~~~~~~ 181 (306)
.|.|+.....
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 308
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=117.01 Aligned_cols=79 Identities=27% Similarity=0.355 Sum_probs=70.2
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCC-eeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-ceeCCeeEEEe
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWD-VVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG-KLFMGRPLRVA 270 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~-v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g-~~i~g~~l~v~ 270 (306)
+.++|||+|||+.+++++|+++|.+| |. |..+.+. ++|||||+|.+.++|.+|++.||| ..|+|+.|+|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDR-KLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHT-TCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46889999999999999999999997 88 6666553 479999999999999999999999 99999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++++..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 998865543
No 309
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=120.30 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=72.7
Q ss_pred Cccceeee--cCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee-----CC
Q 021890 192 FATFNLFI--ANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF-----MG 264 (306)
Q Consensus 192 ~~~~~l~V--~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i-----~g 264 (306)
.++.+||| +||++.+++++|+++|++| |.|.+|.++. .+|||||+|.+.++|.+|++.|||..+ .|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f-G~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH-SCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc-CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 45788999 7799999999999999998 8999987753 379999999999999999999999998 68
Q ss_pred eeEEEeeCcchhhhhcc
Q 021890 265 RPLRVAPSRQFARLQTK 281 (306)
Q Consensus 265 ~~l~v~~a~~~~~~~~~ 281 (306)
++|.|.|++......++
T Consensus 96 ~~l~v~~a~~~p~~~~~ 112 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSGPS 112 (114)
T ss_dssp EECEEEEESCCCCSSCC
T ss_pred cEEEEEecccCcccCCC
Confidence 99999999876654443
No 310
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=3.3e-16 Score=126.15 Aligned_cols=83 Identities=25% Similarity=0.391 Sum_probs=78.7
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||+|||+.+++++|+++|+.| |.|.++.++++..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI-GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 5789999999999999999999997 999999999999889999999999999999999999999999999999999998
Q ss_pred chhh
Q 021890 274 QFAR 277 (306)
Q Consensus 274 ~~~~ 277 (306)
+...
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7554
No 311
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-16 Score=121.22 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=70.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCC----HHH----HHHHHH--HhcCCc
Q 021890 101 TRLVAQNV----PWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGS----PDE----ATAALN--NLESYE 165 (306)
Q Consensus 101 ~~l~V~nL----~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~----~~~----a~~ai~--~l~~~~ 165 (306)
..|||+|| |+.+++++|+++|+.||.|.++.++.|+ +|.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 56999999 9999999999999999999999999999 69999999999996 323 889988 789999
Q ss_pred ccCeEEEEeeecc
Q 021890 166 FEGRTLKVNYAKI 178 (306)
Q Consensus 166 ~~g~~l~v~~~~~ 178 (306)
|+|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997653
No 312
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.9e-16 Score=125.54 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+.+++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 346789999999999999999999999999999999886 6999999999999999999999999999999999999998
Q ss_pred c
Q 021890 177 K 177 (306)
Q Consensus 177 ~ 177 (306)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 313
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.6e-16 Score=119.71 Aligned_cols=75 Identities=25% Similarity=0.254 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceE-EEEEeCCHHHHHHHHHHhcCCcccC--eEEEEeeec
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGL-AFVTMGSPDEATAALNNLESYEFEG--RTLKVNYAK 177 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~-afV~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~~~ 177 (306)
..|||+||++.+++++|+++|+.||.|.+|+|... .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 35789999999999999999999999999998653 386 9999999999999999999999987 699999998
Q ss_pred ccC
Q 021890 178 IKK 180 (306)
Q Consensus 178 ~~~ 180 (306)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 314
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=115.71 Aligned_cols=78 Identities=31% Similarity=0.389 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEE-EeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIE-LSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~-~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+++++++|+++|+.||.|.+++ ++.++. .|.|||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 457899999999999999999999999999994 776642 3349999999999999999999999999999999998
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 315
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=115.93 Aligned_cols=78 Identities=22% Similarity=0.128 Sum_probs=71.2
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEE-EEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAE-VIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~-i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
..++|||+|||+.+++++|+++|.+| |.|..|+ ++.++.+| .|||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46889999999999999999999998 9999994 77776543 399999999999999999999999999999999
Q ss_pred Ccch
Q 021890 272 SRQF 275 (306)
Q Consensus 272 a~~~ 275 (306)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9886
No 316
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.7e-17 Score=129.17 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=72.9
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEE-----EecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEV-----IFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i-----~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 266 (306)
.+..+|||+|||+.+++++|+++|..| |.|..+.+ ++...+|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRY-VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGG-CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 346889999999999999999999998 88876411 111235889999999999999999999999999999999
Q ss_pred EEEeeCcchhh
Q 021890 267 LRVAPSRQFAR 277 (306)
Q Consensus 267 l~v~~a~~~~~ 277 (306)
|.|.||++...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987543
No 317
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=111.61 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=65.8
Q ss_pred eEEEcCCCCCCCHHH----HHHHhhhc-CCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 102 RLVAQNVPWTSTHED----IRALFEQH-GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 102 ~l~V~nL~~~~t~~~----L~~~f~~~-G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
.|||+|||+.+++++ |+++|+.| |.|.+| + .|+|||.|.+.++|.+|++.|+|..+.||.|+|.|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 399999999999988 55899999 599988 2 399999999999999999999999999999999999
Q ss_pred cccCCCC
Q 021890 177 KIKKKNP 183 (306)
Q Consensus 177 ~~~~~~~ 183 (306)
+.+.+.-
T Consensus 82 ~~~sd~~ 88 (96)
T 2diu_A 82 PKNRELC 88 (96)
T ss_dssp CCSCCCC
T ss_pred CCCccee
Confidence 9876543
No 318
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=112.80 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=66.0
Q ss_pred cce-eeecCCChhhhHHH----HHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 194 TFN-LFIANLSFEARAKD----LREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 194 ~~~-l~V~nL~~~~t~~~----l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
+.+ |||+|||+.+++++ |+++|.+|+|.|.+| +| |+|||+|.+.++|.+|++.|+|..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 555 99999999999987 568999974599888 34 9999999999999999999999999999999
Q ss_pred EeeCcchhh
Q 021890 269 VAPSRQFAR 277 (306)
Q Consensus 269 v~~a~~~~~ 277 (306)
|.||+....
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999988654
No 319
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-16 Score=113.80 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
..+.++|||+|| .+++++|+++|.+| |.|..|.+. .++|||||+|.+.++|.+|+..|+|..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~-G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPF-GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTT-SCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhC-CCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345689999996 89999999999997 999999884 468999999999999999999999999999999999
Q ss_pred eCcchhhhh
Q 021890 271 PSRQFARLQ 279 (306)
Q Consensus 271 ~a~~~~~~~ 279 (306)
|++++....
T Consensus 83 ~a~~~~~~~ 91 (97)
T 1x5p_A 83 IARKQPMLD 91 (97)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCCCCC
Confidence 998865543
No 320
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=2.3e-16 Score=127.38 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=79.2
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||..+++++|+++|+.| |.|.+|.++++..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAI-GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 36789999999999999999999997 99999999999889999999999999999999999999999999999999999
Q ss_pred cchhh
Q 021890 273 RQFAR 277 (306)
Q Consensus 273 ~~~~~ 277 (306)
.+...
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87554
No 321
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=2.1e-16 Score=129.23 Aligned_cols=84 Identities=24% Similarity=0.337 Sum_probs=78.5
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|||+.+++++|+++|..| |.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHT-SCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 346899999999999999999999997 999999999988 899999999999999999999999999999999999999
Q ss_pred Ccchhh
Q 021890 272 SRQFAR 277 (306)
Q Consensus 272 a~~~~~ 277 (306)
|.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 987544
No 322
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.7e-16 Score=113.37 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=70.3
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcC-CCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEG-WDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~-G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
.+.++|||+|||+.+++++|+++|.+|+ |.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3468999999999999999999999952 688888663 6799999999999999999999999999999999
Q ss_pred eCcchhh
Q 021890 271 PSRQFAR 277 (306)
Q Consensus 271 ~a~~~~~ 277 (306)
|++++.+
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9988665
No 323
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-17 Score=123.74 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=72.9
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCe----eEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDV----VSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v----~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
..+|||+|||+.+++++|+++|+.| |.| ..|.|+.+ .+|+++|||||+|.+.++|.+|++. ++..|+||.|+|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~-g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQH-CPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTT-SCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhh-CCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 5789999999999999999999997 765 68999998 4799999999999999999999986 999999999999
Q ss_pred eeCcchh
Q 021890 270 APSRQFA 276 (306)
Q Consensus 270 ~~a~~~~ 276 (306)
..+.++.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986654
No 324
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=5.4e-16 Score=130.44 Aligned_cols=87 Identities=17% Similarity=0.357 Sum_probs=80.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
....++|||+|||+.+++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999986 699999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 021890 176 AKIKKKNP 183 (306)
Q Consensus 176 ~~~~~~~~ 183 (306)
+.......
T Consensus 202 a~~~~~~~ 209 (216)
T 2qfj_A 202 AVTPPMPL 209 (216)
T ss_dssp CSSCSSTT
T ss_pred ecCCCCCC
Confidence 98765443
No 325
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=114.23 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=70.3
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
..+|||+|||+.+++++|+++|..| |.|..| +.+..+|. ||||+|.+.++|.+|+. |+|..|+|+.|+|.++.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAF-GPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGT-SCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc-CCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 5789999999999999999999997 999987 66666655 99999999999999999 99999999999999987
Q ss_pred chhhhh
Q 021890 274 QFARLQ 279 (306)
Q Consensus 274 ~~~~~~ 279 (306)
++....
T Consensus 81 ~~~~~~ 86 (94)
T 2e5g_A 81 QKEFQS 86 (94)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 655433
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=3.1e-16 Score=112.80 Aligned_cols=71 Identities=31% Similarity=0.587 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQH----G-------TVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~----G-------~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 167 (306)
..++|||+|||+++++++|+++|+.| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45789999999999999999999999 8 8999998755 899999999999999999 89999999
Q ss_pred CeEEEEee
Q 021890 168 GRTLKVNY 175 (306)
Q Consensus 168 g~~l~v~~ 175 (306)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 327
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=4.1e-16 Score=112.87 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=62.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCc--ccCeEEEEe
Q 021890 97 EYSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE--FEGRTLKVN 174 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~--~~g~~l~v~ 174 (306)
.....+|||||||+++++++|+++|+.||.|.+++|+++ ++|||||+|.+.++|++ +++.. +.|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 344678999999999999999999999999999999874 69999999999999984 45544 469999999
Q ss_pred eecccCC
Q 021890 175 YAKIKKK 181 (306)
Q Consensus 175 ~~~~~~~ 181 (306)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987543
No 328
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=9.8e-16 Score=114.24 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=73.3
Q ss_pred CccceeeecCCCh-----hhhHHHHHHHHHhcCCCeeEEEEEecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 021890 192 FATFNLFIANLSF-----EARAKDLREFFISEGWDVVSAEVIFHDNP-RRSAGYGFVSFKSKKVAETAISAFQGKLFMGR 265 (306)
Q Consensus 192 ~~~~~l~V~nL~~-----~~t~~~l~~~F~~~~G~v~~v~i~~~~~t-g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 265 (306)
.++++|+|.||.. .-++++|++.|++| |.|.+|.|++++.+ +.++|+|||+|.+.++|.+|+..|||..|+||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~-G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY-GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG-SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc-CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3478899999962 34789999999998 99999999998754 68899999999999999999999999999999
Q ss_pred eEEEeeCcch
Q 021890 266 PLRVAPSRQF 275 (306)
Q Consensus 266 ~l~v~~a~~~ 275 (306)
.|+|.|+...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999763
No 329
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=6.2e-16 Score=125.37 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+.+++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.||.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 36789999999999999999999999999999999986 79999999999999999999999999999999999999973
No 330
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=8.7e-16 Score=117.58 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=74.3
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeCC--eeEEEee
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGY-GFVSFKSKKVAETAISAFQGKLFMG--RPLRVAP 271 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~-afV~f~~~~~a~~Al~~l~g~~i~g--~~l~v~~ 271 (306)
..|||+||++.+++++|+++|++| |.|.+|.|... .|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y-G~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV-GKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT-SCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 457899999999999999999997 99999998652 275 9999999999999999999999987 6999999
Q ss_pred Ccchhh-hhccccCCCCCCcccc
Q 021890 272 SRQFAR-LQTKEGLHSDETSDDL 293 (306)
Q Consensus 272 a~~~~~-~~~~~~~~~~~~~~~~ 293 (306)
|+++.- ...++....|.|...+
T Consensus 99 Ak~~~l~v~~n~~~srDyt~~~l 121 (124)
T 2e5i_A 99 ARPTRLNVIRNDNDSWDYTKPYL 121 (124)
T ss_dssp CSCSCCCCSSCSSSEEESSCCCC
T ss_pred ecCCcceeecCCCCCCCCCCCCC
Confidence 988752 2223333444444443
No 331
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=8.1e-16 Score=124.87 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc---CeEEEEee
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE---GRTLKVNY 175 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~---g~~l~v~~ 175 (306)
..++|||+|||+.+++++|+++|+.||.|.++.+.++.+|.++|||||+|.+.++|.+|++.|||..+. |+.|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 457899999999999999999999999999999999988999999999999999999999999998776 49999999
Q ss_pred ec
Q 021890 176 AK 177 (306)
Q Consensus 176 ~~ 177 (306)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 332
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=3.2e-16 Score=119.08 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeE-----EEE
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT-----LKV 173 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~-----l~v 173 (306)
..++|||+|||+++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+.|||..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3578999999999999999999999999999999754 99999999999999999999999999998 666
Q ss_pred eeeccc
Q 021890 174 NYAKIK 179 (306)
Q Consensus 174 ~~~~~~ 179 (306)
..+.+.
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 665554
No 333
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=7.4e-16 Score=143.08 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+.+|+++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999886 6999999999999999999999999999999999999999
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87543
No 334
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=9.5e-16 Score=127.14 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeee
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYA 176 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~ 176 (306)
...++|||+|||+.+++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999987 7999999999999999999999999999999999999999
Q ss_pred cccCC
Q 021890 177 KIKKK 181 (306)
Q Consensus 177 ~~~~~ 181 (306)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 335
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.4e-15 Score=126.00 Aligned_cols=85 Identities=27% Similarity=0.397 Sum_probs=77.4
Q ss_pred CCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 191 PFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
....++|||+|||+.+++++|+++|+.| |.|.+|.+++++.+|.++|||||+|.+.++|.+|+.. +|..+.|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQW-GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 3457899999999999999999999998 9999999999999999999999999999999999985 9999999999999
Q ss_pred eCcchhh
Q 021890 271 PSRQFAR 277 (306)
Q Consensus 271 ~a~~~~~ 277 (306)
++.....
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9977654
No 336
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=2.3e-16 Score=121.25 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=71.8
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCee--EEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVV--SAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~--~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
...+|||+|||+.+++++|+++|+.| + |. .|.|++|+. |+++|||||+|.+.++|.+|++ +++..|+||.|+|.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~-i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-E-IVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-C-EEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-C-ceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 46789999999999999999999997 4 66 899999887 9999999999999999999998 48899999999999
Q ss_pred eCcch
Q 021890 271 PSRQF 275 (306)
Q Consensus 271 ~a~~~ 275 (306)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.3e-15 Score=126.34 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|||+.+++++|+++|+.||.|.+|+|.++.+|.++|||||+|.+.++|.+|+..+ +..++|+.|.|.++.
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 3468899999999999999999999999999999999888999999999999999999999854 569999999999876
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 338
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=115.39 Aligned_cols=77 Identities=13% Similarity=0.254 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-C---CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-K---NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKV 173 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~---~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 173 (306)
...++|||+|||+++++++|+++|+.||.|. +.++.+. + |+++|||||+|.+.++|++|++.|++ ++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3458899999999999999999999999999 7777665 3 69999999999999999999998843 67777666
Q ss_pred eeec
Q 021890 174 NYAK 177 (306)
Q Consensus 174 ~~~~ 177 (306)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 339
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=3.7e-16 Score=126.10 Aligned_cols=80 Identities=20% Similarity=0.406 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
..++|||+|||+.+++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++ ++|..++|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999886 69999999999999999999999 89999999999999998
Q ss_pred cc
Q 021890 178 IK 179 (306)
Q Consensus 178 ~~ 179 (306)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.8e-16 Score=112.71 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+++++++|+++|+.||.|.+++++.+ ++|||||+|.+.++|++|+. .+..+.|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 4588999999999999999999999999999998764 68999999999999986543 24556999999999987
Q ss_pred cCCC
Q 021890 179 KKKN 182 (306)
Q Consensus 179 ~~~~ 182 (306)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6554
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=5.8e-16 Score=128.40 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHh--cCCcccCeEEEEeeecccCCCCCCCCC---CCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeE
Q 021890 150 SPDEATAALNNL--ESYEFEGRTLKVNYAKIKKKNPFPPVQ---PKPFATFNLFIANLSFEARAKDLREFFISEGWDVVS 224 (306)
Q Consensus 150 ~~~~a~~ai~~l--~~~~~~g~~l~v~~~~~~~~~~~~~~~---~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~ 224 (306)
+.+.+..|++.. ....+.+....|...... +.+... ......++|||+|||+.+++++|+++|++| |.|..
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~---p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~ 138 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSK---PLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK-GQVLN 138 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTS---CCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS-CCEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccC---CCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC-CCEEE
Confidence 667788888866 455555554555433111 100000 011235789999999999999999999997 99999
Q ss_pred EEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhhh
Q 021890 225 AEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFARL 278 (306)
Q Consensus 225 v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 278 (306)
|+++++.. |.++|||||+|.+.++|.+|+..+ |..|+|+.|+|.+++.....
T Consensus 139 v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~~~ 190 (193)
T 2voo_A 139 IQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYFAK 190 (193)
T ss_dssp EEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC---
T ss_pred EEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHHHH
Confidence 99999764 889999999999999999999865 56999999999998876543
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=6.8e-16 Score=111.42 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=68.8
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.++|||+|||+.+++++|+++|.+| .|.++.+. .++|||||+|.+.++|.+|++.|||..++|+.|+|.|+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 5789999999999999999999996 79888884 478999999999999999999999999999999999986
Q ss_pred chh
Q 021890 274 QFA 276 (306)
Q Consensus 274 ~~~ 276 (306)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=3.9e-15 Score=110.98 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhhcCCeEEEEEeecC--CCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeE
Q 021890 98 YSKTRLVAQNVPW-----TSTHEDIRALFEQHGTVLDIELSMHS--KNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170 (306)
Q Consensus 98 ~~~~~l~V~nL~~-----~~t~~~L~~~f~~~G~i~~~~~~~~~--~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 170 (306)
..+++|+|.||.. +.++++|+++|++||.|.++.|.+++ .+.++|||||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3468899999963 23789999999999999999999876 3688999999999999999999999999999999
Q ss_pred EEEeeeccc
Q 021890 171 LKVNYAKIK 179 (306)
Q Consensus 171 l~v~~~~~~ 179 (306)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998753
No 344
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.4e-15 Score=109.96 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=62.8
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--eCCeeEEE
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL--FMGRPLRV 269 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~--i~g~~l~v 269 (306)
.+..+|||+|||+++++++|+++|++| |.|.+|.++++ ++|||||+|.+.++|.+ |+|.. +.|+.|.|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~-G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY-GEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 446899999999999999999999997 99999999874 68999999999999883 56655 55999999
Q ss_pred eeCcchhh
Q 021890 270 APSRQFAR 277 (306)
Q Consensus 270 ~~a~~~~~ 277 (306)
.+|+++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987643
No 345
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=1.4e-15 Score=116.52 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=70.4
Q ss_pred CccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 192 FATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 192 ~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
.+.++|||+|| ++++++|+++|++| |.|..|.+. .++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~-G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF-GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT-CCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc-CCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999996 69999999999997 999999885 4689999999999999999999999999999999999
Q ss_pred Ccchhhhh
Q 021890 272 SRQFARLQ 279 (306)
Q Consensus 272 a~~~~~~~ 279 (306)
+++.....
T Consensus 108 a~~~~~~~ 115 (121)
T 2bz2_A 108 ARKQPMLD 115 (121)
T ss_dssp CCSSCC--
T ss_pred eCCCCCCC
Confidence 98875543
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=1.7e-15 Score=116.08 Aligned_cols=77 Identities=26% Similarity=0.339 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
...++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45688999995 79999999999999999999886 458999999999999999999999999999999999998
Q ss_pred ccCC
Q 021890 178 IKKK 181 (306)
Q Consensus 178 ~~~~ 181 (306)
.+..
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.2e-15 Score=115.93 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=66.4
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCee-----EE
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP-----LR 268 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~-----l~ 268 (306)
.++|||+|||+.+++++|+++|.+| |.|..|.|+.+ |||||+|.+.++|.+|++.|||..|+|+. |+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREA-GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGG-SCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 5789999999999999999999997 99999998764 89999999999999999999999999988 77
Q ss_pred EeeCcchhh
Q 021890 269 VAPSRQFAR 277 (306)
Q Consensus 269 v~~a~~~~~ 277 (306)
|..+.+...
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 777766443
No 348
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=3e-15 Score=121.82 Aligned_cols=77 Identities=21% Similarity=0.465 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
..++|||+|||+.+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+.+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 45789999999999999999999999988755 55788999999999999999999999999999999999999986
Q ss_pred c
Q 021890 179 K 179 (306)
Q Consensus 179 ~ 179 (306)
+
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 5
No 349
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=3.6e-15 Score=124.83 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=71.9
Q ss_pred ccceeeecCCC-hhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEee
Q 021890 193 ATFNLFIANLS-FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAP 271 (306)
Q Consensus 193 ~~~~l~V~nL~-~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 271 (306)
++.+|||+||+ ..+++++|+++|.+| |.|.+|+++++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~-G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY-GNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT-SCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc-CCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46789999999 899999999999997 99999999864 379999999999999999999999999999999999
Q ss_pred Ccchh
Q 021890 272 SRQFA 276 (306)
Q Consensus 272 a~~~~ 276 (306)
++...
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=2.9e-15 Score=127.26 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=71.4
Q ss_pred cCCCCeEEEcCCCCCC---------CHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcc-
Q 021890 97 EYSKTRLVAQNVPWTS---------THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEF- 166 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~---------t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~- 166 (306)
....++||||||+..+ ++++|+++|+.||.|.+|+|+.. +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4467899999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred -----------cCeEEEEeeecccC
Q 021890 167 -----------EGRTLKVNYAKIKK 180 (306)
Q Consensus 167 -----------~g~~l~v~~~~~~~ 180 (306)
.|+.|.|.|++...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=113.23 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=67.8
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNP---RRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~t---g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
..++|||+|||+.+++++|+++|++| |.|. +.++.+..+ |.++|||||+|.+.++|.+|++.|+ .++|+.|.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF-GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT-CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 36889999999999999999999997 9999 888888776 7999999999999999999999984 367777777
Q ss_pred eeCcc
Q 021890 270 APSRQ 274 (306)
Q Consensus 270 ~~a~~ 274 (306)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65543
No 352
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=6e-15 Score=105.99 Aligned_cols=72 Identities=22% Similarity=0.509 Sum_probs=65.4
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcC---C-------CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEG---W-------DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~---G-------~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i 262 (306)
+.++|||+|||+.+++++|+++|.+|+ | .|.++.+.+ .+|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 468999999999999999999999963 6 899988864 3799999999999999999 9999999
Q ss_pred CCeeEEEee
Q 021890 263 MGRPLRVAP 271 (306)
Q Consensus 263 ~g~~l~v~~ 271 (306)
+|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 353
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.3e-14 Score=108.22 Aligned_cols=84 Identities=21% Similarity=0.137 Sum_probs=72.0
Q ss_pred CccceeeecCC--Ch--------hhhHHHHHHHHHhcCCCeeEEEEEecCCC--CCCccEEEEEeCCHHHHHHHHHHhCC
Q 021890 192 FATFNLFIANL--SF--------EARAKDLREFFISEGWDVVSAEVIFHDNP--RRSAGYGFVSFKSKKVAETAISAFQG 259 (306)
Q Consensus 192 ~~~~~l~V~nL--~~--------~~t~~~l~~~F~~~~G~v~~v~i~~~~~t--g~~~g~afV~f~~~~~a~~Al~~l~g 259 (306)
.+++.|.|.|+ +. ...+++|++.|++| |.|.+|.|+++..+ +.++|+|||+|.+.++|.+|+..|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~-G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY-GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT-SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc-CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 45788999997 22 23557999999997 99999999988754 36899999999999999999999999
Q ss_pred ceeCCeeEEEeeCcchh
Q 021890 260 KLFMGRPLRVAPSRQFA 276 (306)
Q Consensus 260 ~~i~g~~l~v~~a~~~~ 276 (306)
+.|+||.|+|.|+....
T Consensus 82 ~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDS 98 (105)
T ss_dssp CEETTEECEEEEECHHH
T ss_pred CEeCCCEEEEEEeCHHH
Confidence 99999999999986643
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-15 Score=108.42 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=66.1
Q ss_pred ccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 193 ATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 193 ~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
+.++|||+|||..+++++|+++|.+| |.|..|.++.+ ++|||||+|.+.++|.+|+.. +..+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY-GDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT-SCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 36889999999999999999999997 99999998764 689999999999999764321 34568999999999
Q ss_pred cchhhh
Q 021890 273 RQFARL 278 (306)
Q Consensus 273 ~~~~~~ 278 (306)
+++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 886543
No 355
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=2.6e-15 Score=111.78 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHHh------------hhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 105 AQNVPWTSTHEDIRALF------------EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 105 V~nL~~~~t~~~L~~~f------------~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
+.||++.+++++|++.| ++||.|.++.|.++..|+++|||||+|.+.++|.+|++.|||..++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888887776 999999999999888889999999999999999999999999999999999
Q ss_pred Eeee
Q 021890 173 VNYA 176 (306)
Q Consensus 173 v~~~ 176 (306)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 356
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2e-14 Score=122.39 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=73.2
Q ss_pred CccceeeecCCCh-hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEe
Q 021890 192 FATFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVA 270 (306)
Q Consensus 192 ~~~~~l~V~nL~~-~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~ 270 (306)
.+.++|||+|||+ .+++++|+++|+.| |.|.+|+++++. +|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~-G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVY-GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHH-TCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhC-CCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3478999999999 99999999999998 999999998764 7899999999999999999999999999999999
Q ss_pred eCcchh
Q 021890 271 PSRQFA 276 (306)
Q Consensus 271 ~a~~~~ 276 (306)
|++...
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 998764
No 357
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=1e-14 Score=108.51 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=64.4
Q ss_pred ecCCChhhhHHHHHHHH------------HhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 021890 199 IANLSFEARAKDLREFF------------ISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266 (306)
Q Consensus 199 V~nL~~~~t~~~l~~~F------------~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 266 (306)
+.||+..+++++|++.| ++| |.|.+|.|+++.. |.++|||||+|.+.++|.+|+..|||..++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~-G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY-GEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC-CceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56788888888777666 997 9999999998764 789999999999999999999999999999999
Q ss_pred EEEeeC
Q 021890 267 LRVAPS 272 (306)
Q Consensus 267 l~v~~a 272 (306)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.3e-14 Score=106.71 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCccceeeecCCCh--hh---------hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 021890 190 KPFATFNLFIANLSF--EA---------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (306)
Q Consensus 190 ~~~~~~~l~V~nL~~--~~---------t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~ 258 (306)
...++++|+|.||.. .+ ++++|+++|.+| |.|..|.| .+. .++|||||+|.+.++|.+|+..||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~-G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF-GQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT-SCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc-CCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 334578999999933 22 368999999997 99999955 553 379999999999999999999999
Q ss_pred CceeCCeeEEEeeCcchhhhh
Q 021890 259 GKLFMGRPLRVAPSRQFARLQ 279 (306)
Q Consensus 259 g~~i~g~~l~v~~a~~~~~~~ 279 (306)
|..|+|+.|+|.|+.++.+..
T Consensus 86 g~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp TCEETTEECEEEECCSCCCSS
T ss_pred CCEECCcEEEEEEeCCCCCcc
Confidence 999999999999998865543
No 359
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=1.9e-14 Score=126.12 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=75.3
Q ss_pred CCccceeeecCCChhhhHHHHH----HHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 021890 191 PFATFNLFIANLSFEARAKDLR----EFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRP 266 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~t~~~l~----~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 266 (306)
..+.++|||+|||+.+++++|+ ++|..| |.|.+|.+.+ +|.++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~-G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQF-GQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 3457899999999999999966 899997 9999998875 5789999999999999999999999999999999
Q ss_pred EEEeeCcchhh
Q 021890 267 LRVAPSRQFAR 277 (306)
Q Consensus 267 l~v~~a~~~~~ 277 (306)
|+|.|++....
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.9e-14 Score=105.56 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=70.2
Q ss_pred cCCCCeEEEcCCCCCCC-----------HHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCc
Q 021890 97 EYSKTRLVAQNVPWTST-----------HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYE 165 (306)
Q Consensus 97 ~~~~~~l~V~nL~~~~t-----------~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 165 (306)
....++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34568899999954432 5899999999999999966 443 379999999999999999999999999
Q ss_pred ccCeEEEEeeecccCC
Q 021890 166 FEGRTLKVNYAKIKKK 181 (306)
Q Consensus 166 ~~g~~l~v~~~~~~~~ 181 (306)
|+|+.|.|.++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999987544
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=2.7e-14 Score=121.28 Aligned_cols=80 Identities=21% Similarity=0.181 Sum_probs=70.6
Q ss_pred CCccceeeecCCChhh---------hHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 021890 191 PFATFNLFIANLSFEA---------RAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261 (306)
Q Consensus 191 ~~~~~~l~V~nL~~~~---------t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~ 261 (306)
....++|||+||+..+ ++++|+++|++| |.|.+|+|+. ++|||||+|.+.++|..|+++|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-G~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-GDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc-CCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3347899999999998 899999999998 9999999985 48999999999999999999999999
Q ss_pred e------------CCeeEEEeeCcchhh
Q 021890 262 F------------MGRPLRVAPSRQFAR 277 (306)
Q Consensus 262 i------------~g~~l~v~~a~~~~~ 277 (306)
| .|+.|.|.||+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987554
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=5.2e-14 Score=106.94 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=70.4
Q ss_pred ccceeeecCCCh-----hhhHHHHHHHHHhcCCCeeEEEEEecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 021890 193 ATFNLFIANLSF-----EARAKDLREFFISEGWDVVSAEVIFHDN----PRRSAGYGFVSFKSKKVAETAISAFQGKLFM 263 (306)
Q Consensus 193 ~~~~l~V~nL~~-----~~t~~~l~~~F~~~~G~v~~v~i~~~~~----tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 263 (306)
++++|+|.|+-. .-.+++|++.|++| |.|.+|.|+++.. ++.++|+|||+|.+.++|.+|+..|||+.|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~-G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF-GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT-SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367899999832 12468999999997 9999999998864 4567899999999999999999999999999
Q ss_pred CeeEEEeeCcc
Q 021890 264 GRPLRVAPSRQ 274 (306)
Q Consensus 264 g~~l~v~~a~~ 274 (306)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=119.03 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=72.2
Q ss_pred cceeeecCCCh-hhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeC
Q 021890 194 TFNLFIANLSF-EARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPS 272 (306)
Q Consensus 194 ~~~l~V~nL~~-~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 272 (306)
.++|||+|||+ .+++++|+++|+.| |.|..|.++++. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~-G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY-GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT-CCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 57899999999 99999999999997 999999998764 789999999999999999999999999999999999
Q ss_pred cchhh
Q 021890 273 RQFAR 277 (306)
Q Consensus 273 ~~~~~ 277 (306)
+....
T Consensus 77 ~~~~~ 81 (198)
T 1qm9_A 77 KHQNV 81 (198)
T ss_dssp CCCSC
T ss_pred cCCCc
Confidence 87643
No 364
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=1.2e-13 Score=119.87 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcC-Cccc---CeEEEEe
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLES-YEFE---GRTLKVN 174 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~-~~~~---g~~l~v~ 174 (306)
..++|||+|||+.+++++|+++|+.||.|.++.++.+.+|.++|||||+|.+.++|.+|+..|++ ..+. |+.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 46789999999999999999999999999999999998899999999999999999999999954 4444 9999999
Q ss_pred eecccCC
Q 021890 175 YAKIKKK 181 (306)
Q Consensus 175 ~~~~~~~ 181 (306)
++.....
T Consensus 175 ~~~~~~~ 181 (261)
T 3sde_A 175 PMEQFDD 181 (261)
T ss_dssp ECCCEES
T ss_pred eccccCc
Confidence 9987643
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=8.3e-14 Score=103.74 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=70.1
Q ss_pred CCCeEEEcCC--CCCC--------CHHHHHHHhhhcCCeEEEEEeecCC---CCcceEEEEEeCCHHHHHHHHHHhcCCc
Q 021890 99 SKTRLVAQNV--PWTS--------THEDIRALFEQHGTVLDIELSMHSK---NRNRGLAFVTMGSPDEATAALNNLESYE 165 (306)
Q Consensus 99 ~~~~l~V~nL--~~~~--------t~~~L~~~f~~~G~i~~~~~~~~~~---~~~~g~afV~f~~~~~a~~ai~~l~~~~ 165 (306)
+++.|.|.|+ +... .+++|++.|++||.|.++.|.++.. +.++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 3333 2479999999999999999988764 3679999999999999999999999999
Q ss_pred ccCeEEEEeeeccc
Q 021890 166 FEGRTLKVNYAKIK 179 (306)
Q Consensus 166 ~~g~~l~v~~~~~~ 179 (306)
++||.|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=3.1e-13 Score=102.66 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHhhhcCCeEEEEEeecCC-----CCcceEEEEEeCCHHHHHHHHHHhcCCcccC
Q 021890 99 SKTRLVAQNVPW-----TSTHEDIRALFEQHGTVLDIELSMHSK-----NRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (306)
Q Consensus 99 ~~~~l~V~nL~~-----~~t~~~L~~~f~~~G~i~~~~~~~~~~-----~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 168 (306)
.+++|+|.|+-. +--+++|++.|++||.|.++.|.++.. +.++|+|||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468899999832 124789999999999999999988753 4678999999999999999999999999999
Q ss_pred eEEEEeeecc
Q 021890 169 RTLKVNYAKI 178 (306)
Q Consensus 169 ~~l~v~~~~~ 178 (306)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=95.98 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecccCCC
Q 021890 110 WTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKIKKKN 182 (306)
Q Consensus 110 ~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~~~~~ 182 (306)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++|++.+++ +.|+.|+|.|+..+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 468999999999999999999987 36799999999999999999997544 68999999999876543
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=9.5e-13 Score=99.27 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=67.4
Q ss_pred CccceeeecCCC----------hhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 021890 192 FATFNLFIANLS----------FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKL 261 (306)
Q Consensus 192 ~~~~~l~V~nL~----------~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~ 261 (306)
.++++|.|.|+= ..-.+++|++.|++| |.|.+|.|.++. ++|+|||+|.+.++|.+|+..|||..
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf-G~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH-GGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT-TCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc-CCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 457788888872 233457899999997 999999886542 58999999999999999999999999
Q ss_pred eCCeeEEEeeCcchh
Q 021890 262 FMGRPLRVAPSRQFA 276 (306)
Q Consensus 262 i~g~~l~v~~a~~~~ 276 (306)
|+||.|+|.|+....
T Consensus 80 f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 80 FAGKMITAAYVPLPT 94 (114)
T ss_dssp ETTEECEEEEECHHH
T ss_pred ECCEEEEEEEEcHHH
Confidence 999999999986543
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.3e-12 Score=94.83 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcchhh
Q 021890 204 FEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 204 ~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 277 (306)
..+++++|+++|.+| |.|.+|.|+ +.++|||||+|.+.++|.+|++.++| +.|+.|+|.|+++...
T Consensus 27 ~~~te~~L~~~F~~~-G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY-GEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTT-SCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhc-CCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 478999999999997 999999987 46799999999999999999997544 6799999999987654
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=9.2e-13 Score=117.73 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=65.0
Q ss_pred CCCCeEEEcC--CCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc---Ce--E
Q 021890 98 YSKTRLVAQN--VPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE---GR--T 170 (306)
Q Consensus 98 ~~~~~l~V~n--L~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~---g~--~ 170 (306)
...++||||| |++.+++++|+++|++||.|.++.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3457899999 588999999999999999999987754 4799999999999999999999999883 45 5
Q ss_pred EEEeeec
Q 021890 171 LKVNYAK 177 (306)
Q Consensus 171 l~v~~~~ 177 (306)
|.+.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7788874
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=6e-12 Score=94.85 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCccc
Q 021890 98 YSKTRLVAQNVPWTS----------THEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFE 167 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~----------t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 167 (306)
..++.|.+.|+=... -+++|++.|++||.|.++.|.++. .+|+|||+|.+.++|.+|++.|||..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345778888883321 245889999999999999886542 5899999999999999999999999999
Q ss_pred CeEEEEeeeccc
Q 021890 168 GRTLKVNYAKIK 179 (306)
Q Consensus 168 g~~l~v~~~~~~ 179 (306)
||.|.|.|+...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998643
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=3.8e-12 Score=113.74 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=66.9
Q ss_pred CCCccceeeecC--CChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---C
Q 021890 190 KPFATFNLFIAN--LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFM---G 264 (306)
Q Consensus 190 ~~~~~~~l~V~n--L~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~---g 264 (306)
...++.+|||+| |+..+++++|+++|++| |.|.+|.+.. +||||||+|.+.++|.+|++.|||..+. |
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~-G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTT-SCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc-CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 345688999999 57899999999999997 9999886642 4799999999999999999999999883 4
Q ss_pred e--eEEEeeCcc
Q 021890 265 R--PLRVAPSRQ 274 (306)
Q Consensus 265 ~--~l~v~~a~~ 274 (306)
+ .|.|.|+..
T Consensus 87 ~~~~ly~~~~~~ 98 (345)
T 3tht_A 87 QKITLYLNFVEK 98 (345)
T ss_dssp CEEECEEEECSS
T ss_pred CceEEEEEEeec
Confidence 4 688899853
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-10 Score=81.99 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCccceeeecCCC----hhhh----HHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 021890 191 PFATFNLFIANLS----FEAR----AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLF 262 (306)
Q Consensus 191 ~~~~~~l~V~nL~----~~~t----~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i 262 (306)
.++..+|+|.-.+ ..+- -.+|.+.|..| |.|..++++.+. +||+|.+.++|.+|++ |||..+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~-G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF-GEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT-CCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC-CCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 4456778887765 1222 25799999997 999999998753 8999999999999998 999999
Q ss_pred CCeeEEEeeCcc
Q 021890 263 MGRPLRVAPSRQ 274 (306)
Q Consensus 263 ~g~~l~v~~a~~ 274 (306)
+||.|+|.++.+
T Consensus 74 ~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 74 LNRTITIALKSP 85 (91)
T ss_dssp TTEEEEEEECCC
T ss_pred CCeEEEEEeCCC
Confidence 999999999875
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.7e-10 Score=87.12 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCC-HHHHHHHHHHhc--CCcccCeEEEEe
Q 021890 99 SKTRLVAQNVPWT-STHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGS-PDEATAALNNLE--SYEFEGRTLKVN 174 (306)
Q Consensus 99 ~~~~l~V~nL~~~-~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~-~~~a~~ai~~l~--~~~~~g~~l~v~ 174 (306)
....|||+||++. +++++|+++|+.||.|..|.+.++ ...|||.|.+ .++|..|++.|+ +..|.|..+.++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-----~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-----CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 4578999999999 999999999999999999999876 3469999999 899999999984 788888888777
Q ss_pred eec
Q 021890 175 YAK 177 (306)
Q Consensus 175 ~~~ 177 (306)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 554
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.8e-10 Score=80.69 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCeEEEcCCC----CCCCH----HHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEE
Q 021890 100 KTRLVAQNVP----WTSTH----EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTL 171 (306)
Q Consensus 100 ~~~l~V~nL~----~~~t~----~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 171 (306)
..+|+|.-.+ .++-. .+|.+.|..||.|..+++..+ .+||+|.+.++|.+|++ |||..+.||.|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 3567777665 23333 779999999999999999865 38999999999999999 99999999999
Q ss_pred EEeeeccc
Q 021890 172 KVNYAKIK 179 (306)
Q Consensus 172 ~v~~~~~~ 179 (306)
+|+++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998864
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=3.2e-10 Score=85.67 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=67.2
Q ss_pred CccceeeecCCChh-hhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCC-HHHHHHHHHHhC--CceeCCeeE
Q 021890 192 FATFNLFIANLSFE-ARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKS-KKVAETAISAFQ--GKLFMGRPL 267 (306)
Q Consensus 192 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~-~~~a~~Al~~l~--g~~i~g~~l 267 (306)
.....|+|+||+.. +++++|+++|+.| |.|.+|.+.++.. .|||+|.+ ..+|..|+.+|+ |..|.|..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 34688999999999 9999999999997 9999999988754 49999999 899999999995 789999999
Q ss_pred EEeeCcc
Q 021890 268 RVAPSRQ 274 (306)
Q Consensus 268 ~v~~a~~ 274 (306)
++.....
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9877543
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=8.6e-10 Score=78.59 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=62.6
Q ss_pred CCCCccceeeecCCChh-----hhH----HHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 021890 189 PKPFATFNLFIANLSFE-----ARA----KDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (306)
Q Consensus 189 ~~~~~~~~l~V~nL~~~-----~t~----~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g 259 (306)
...++..+|+|.-++.. +-. .+|.+.|..| |.|..++++.|. +||+|.+.++|.+|++ |+|
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~-G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY-GTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH-SCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC-CCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC
Confidence 34566789999887632 222 5689999998 899999999763 9999999999999998 999
Q ss_pred ceeCCeeEEEeeCc
Q 021890 260 KLFMGRPLRVAPSR 273 (306)
Q Consensus 260 ~~i~g~~l~v~~a~ 273 (306)
..++||.|+|.+.-
T Consensus 80 ~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRAVKISGPS 93 (95)
T ss_dssp SEETTEEEEEECCC
T ss_pred eeeCCeEEEEeccC
Confidence 99999999999854
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.97 E-value=1.3e-09 Score=91.91 Aligned_cols=69 Identities=19% Similarity=0.100 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHhcCCCeeEEEEEecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcch
Q 021890 206 ARAKDLREFFISEGWDVVSAEVIFHDN----PRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQF 275 (306)
Q Consensus 206 ~t~~~l~~~F~~~~G~v~~v~i~~~~~----tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~ 275 (306)
-.+++|++.|.+| |.|.++.|+++.. +|.++|++||+|.+.++|.+|+..|||+.++||.|+|.|....
T Consensus 141 e~~~dl~~e~~~~-G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKF-GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTT-SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHcc-CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3567899999997 9999999986643 4589999999999999999999999999999999999998643
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.8e-09 Score=75.94 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=59.6
Q ss_pred CCeEEEcCCCCC-----CCH----HHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeE
Q 021890 100 KTRLVAQNVPWT-----STH----EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRT 170 (306)
Q Consensus 100 ~~~l~V~nL~~~-----~t~----~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 170 (306)
..+|+|.-++.. +-. .+|.+.|..||.|..++|..++ +||+|.+.++|.+||+ |+|..+.||.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 467999877643 222 5689999999999999998663 9999999999999999 9999999999
Q ss_pred EEEeeec
Q 021890 171 LKVNYAK 177 (306)
Q Consensus 171 l~v~~~~ 177 (306)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999754
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.89 E-value=3.1e-09 Score=89.65 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=60.5
Q ss_pred CCHHHHHHHhhhcCCeEEEEEeecCC-----CCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeecc
Q 021890 112 STHEDIRALFEQHGTVLDIELSMHSK-----NRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAKI 178 (306)
Q Consensus 112 ~t~~~L~~~f~~~G~i~~~~~~~~~~-----~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~~ 178 (306)
-.+++|++.|++||.|.++.+.++.. +.++|++||+|.+.++|.+|++.|||..+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45789999999999999999986543 48899999999999999999999999999999999999764
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=8.5e-08 Score=69.64 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc-----CCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEE
Q 021890 98 YSKTRLVAQNVPWTSTHEDIRALFEQH-----GTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLK 172 (306)
Q Consensus 98 ~~~~~l~V~nL~~~~t~~~L~~~f~~~-----G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 172 (306)
...++|-+-|||-.+++..|+.+++.+ |.++.|.+..+ -+-|+|+|.+...|-+|.-.|+|..|.|++|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 346889999999999999999999999 99999999887 67899999999999999988999999999999
Q ss_pred Eee
Q 021890 173 VNY 175 (306)
Q Consensus 173 v~~ 175 (306)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 874
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.1e-07 Score=67.60 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=67.6
Q ss_pred cceeeecCCChhhhHHHHHHHHHhc----CCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 194 TFNLFIANLSFEARAKDLREFFISE----GWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~----~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
.++|-+-|||..++++.|+.+.+++ -|.+..+.+..|. +-|+|+|.+...|.+|..+|+|..|.||.|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 5789999999999999999999995 1689888887663 45999999999999999999999999999999
Q ss_pred eeCcchhh
Q 021890 270 APSRQFAR 277 (306)
Q Consensus 270 ~~a~~~~~ 277 (306)
.-.++-.+
T Consensus 95 gTv~eL~~ 102 (117)
T 2l9w_A 95 GTINDMKR 102 (117)
T ss_dssp ECHHHHHH
T ss_pred cCHHHHHh
Confidence 86554443
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.3e-05 Score=57.79 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhh-----cCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQ-----HGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~-----~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
..+|.|.|||..+.++.|.-+|+. =|.|.++... .+-|+|+|.+.+.|++.++. ..+.|+|..|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------GCGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------TTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------CCcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 478999999999999999999987 2568887765 26899999999999999983 4788999999997
Q ss_pred eecccCCCCCCCCCCCCCccceeeecCCChhhh
Q 021890 175 YAKIKKKNPFPPVQPKPFATFNLFIANLSFEAR 207 (306)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 207 (306)
...+.. ..+|++.+|+++++
T Consensus 80 P~~~~~-------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPPRA-------------PARLLLQGLPPGTS 99 (104)
T ss_dssp ECCCCC-------------CCCCCCCSCCCCCC
T ss_pred cCCCCC-------------cceEeeecCCCCCC
Confidence 644322 35689999988764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.08 E-value=1.5e-05 Score=57.63 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=64.7
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEe
Q 021890 100 KTRLVAQNVPWTS-T----HEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVN 174 (306)
Q Consensus 100 ~~~l~V~nL~~~~-t----~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 174 (306)
..+|+|.||+..+ . .+.++++|..|+++......+. -+-..|.|.+.++|.+|...|++..++|+.++|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 3569999998876 2 2577999999999988888754 5678999999999999999999999999999999
Q ss_pred eeccc
Q 021890 175 YAKIK 179 (306)
Q Consensus 175 ~~~~~ 179 (306)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99854
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00016 Score=52.34 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=61.0
Q ss_pred cceeeecCCChhh-h----HHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 021890 194 TFNLFIANLSFEA-R----AKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLR 268 (306)
Q Consensus 194 ~~~l~V~nL~~~~-t----~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~ 268 (306)
..+|+|.||+..+ . .+.++++|..| +.+......+ +-.-..|.|.+.++|.+|...|+|..|+|+.++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~-~~~~tF~~lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY-DKDTTFQYFK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT-CSSCEEEEET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh-CcCcceeecC------cceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3679999998866 2 25789999997 7777665553 233578999999999999999999999999999
Q ss_pred EeeCcc
Q 021890 269 VAPSRQ 274 (306)
Q Consensus 269 v~~a~~ 274 (306)
|-|+.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999884
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00031 Score=50.60 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=61.3
Q ss_pred cceeeecCCChhhhHHHHHHHHHh----cCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 021890 194 TFNLFIANLSFEARAKDLREFFIS----EGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRV 269 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~----~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 269 (306)
..+|.|.|||..+.++.|.-+|+. -+|.|..+.... +-|+|.|.+.+.|++.++. ..+.|.|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 578999999999999999999986 457898887752 4599999999999999973 578999999999
Q ss_pred eeCcch
Q 021890 270 APSRQF 275 (306)
Q Consensus 270 ~~a~~~ 275 (306)
...-+.
T Consensus 79 ~P~~~~ 84 (104)
T 2dhx_A 79 RPAPPR 84 (104)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 775443
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.52 E-value=0.00054 Score=48.59 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=56.0
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR--SAGYGFVSFKSKKVAETAISAFQGKLFMG 264 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~--~~g~afV~f~~~~~a~~Al~~l~g~~i~g 264 (306)
..|.|++||++++++++.+.+... +.+.....+....+.. ...-|+|.|.+.+++..-.+.++|+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM-PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC-CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc-ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 368999999999999999999986 7777766665543222 23569999999999999999999998764
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.43 E-value=0.00078 Score=47.76 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=56.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCC---CCcceEEEEEeCCHHHHHHHHHHhcCCcccC
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSK---NRNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~---~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 168 (306)
.+|-|++||+..|++++.+.++....+....++..+. ...-.-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4689999999999999999999998877777766542 2334679999999999999999999988743
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.30 E-value=0.00074 Score=48.02 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=46.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHh
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNL 161 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 161 (306)
.+.++| ++|..+...||.++|+.||.| .|+++.| ..|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhc
Confidence 456777 999999999999999999965 4777653 58999999999999999865
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.0008 Score=49.97 Aligned_cols=72 Identities=21% Similarity=0.173 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccC-eEEEEeeec
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEG-RTLKVNYAK 177 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g-~~l~v~~~~ 177 (306)
..+-|.|-+.|... ...+...|+.||.|.+.... ....+-.|.|.++.+|++||. .||..+.| -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 35779999999885 67888899999999988762 225799999999999999999 59999975 566666643
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.05 E-value=0.00085 Score=47.86 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=45.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 162 (306)
+.++| ++|..+...||.++|+.||. ..|+++-| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994 45777653 589999999999999999653
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.89 E-value=0.012 Score=43.63 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=58.7
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-eeEEEeeC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMG-RPLRVAPS 272 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g-~~l~v~~a 272 (306)
...|.|-+.|.... ..|...|++| |.|.+... + ....+-.|.|.+..+|.+||. .||..|+| -.|-|.+.
T Consensus 24 ~~wVtVFGFp~~~~-~~VL~~F~~~-G~Iv~~~~---~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQASA-SYILLQFAQY-GNILKHVM---S---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGGH-HHHHHHHHTT-SCEEEEEE---C---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHHH-HHHHHHHHhh-CcEEEecc---C---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 57799999999864 4577777876 99998765 1 124689999999999999998 59999984 77888886
Q ss_pred cchh
Q 021890 273 RQFA 276 (306)
Q Consensus 273 ~~~~ 276 (306)
..+.
T Consensus 95 ~d~~ 98 (119)
T 1wwh_A 95 IDKN 98 (119)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 5444
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.62 E-value=0.0048 Score=43.84 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=44.7
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~ 258 (306)
...++| ++|+.+.-.||.++|..| |. ..|+++-|. .|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~f-gg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAF-GN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTT-CS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhcc-CC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455666 999999999999999998 53 345666543 59999999999999998764
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.45 E-value=0.0031 Score=44.97 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=50.1
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRR--SAGYGFVSFKSKKVAETAISAFQGKLFMG 264 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~--~~g~afV~f~~~~~a~~Al~~l~g~~i~g 264 (306)
+..|.|+.||+++|++++.+.+... -.+.....+....+.. .-.-|+|.|.+.++...-.+..+|..|-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL-PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC-SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc-CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4579999999999999988888764 3443322222211111 12458999999999999999999998754
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.26 E-value=0.0064 Score=45.76 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=57.3
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeE-EEEEec--------CCCC-----CCccEEEEEeCCHHHHHHHHHHhCC
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVS-AEVIFH--------DNPR-----RSAGYGFVSFKSKKVAETAISAFQG 259 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~-v~i~~~--------~~tg-----~~~g~afV~f~~~~~a~~Al~~l~g 259 (306)
...|.|-+.|...... +-+.|++| |.|.+ +...+. .... ....+..|.|.+..+|.+||. .||
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~-G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEF-GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGG-SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhh-ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3457888888877765 66777887 88765 211110 0000 135688999999999999998 599
Q ss_pred ceeCCeeEEEeeCcchhh
Q 021890 260 KLFMGRPLRVAPSRQFAR 277 (306)
Q Consensus 260 ~~i~g~~l~v~~a~~~~~ 277 (306)
..|+|.-|-|.+.++...
T Consensus 84 ~ii~G~mIGV~Py~~~~v 101 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTKDAV 101 (132)
T ss_dssp CEETTEECEEEECCHHHH
T ss_pred eEeCcEEEEEEECCHHHH
Confidence 999999999999875543
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.17 E-value=0.0044 Score=44.17 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=44.8
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQ 258 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~ 258 (306)
..++| ++|+.+.-.||.++|..| | -..|.++-|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f-g-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF-G-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS-E-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc-C-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44666 999999999999999998 6 4456666543 59999999999999999765
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.09 E-value=0.0058 Score=43.57 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=50.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecC-C-C-CcceEEEEEeCCHHHHHHHHHHhcCCcccC
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHS-K-N-RNRGLAFVTMGSPDEATAALNNLESYEFEG 168 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~-~-~-~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 168 (306)
-+|.|+.||+.+|++++.+.++.+-.+....++..+ + + ..-.-|||.|.+.++.....+.++|..+.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 469999999999999998888765554332232222 1 1 123469999999999999999999988733
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.97 E-value=0.0038 Score=57.60 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=42.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHH
Q 021890 99 SKTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159 (306)
Q Consensus 99 ~~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~ 159 (306)
..|.|+|. .|..+++.+|.+.|++||.|.++.+..+. .-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 45889997 79999999999999999999999886542 3699999999999997765
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.82 E-value=0.018 Score=43.28 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=54.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEEeec------------C-CC-CcceEEEEEeCCHHHHHHHHHHhcCCc
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLD-IELSMH------------S-KN-RNRGLAFVTMGSPDEATAALNNLESYE 165 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~-~~~~~~------------~-~~-~~~g~afV~f~~~~~a~~ai~~l~~~~ 165 (306)
..|.|-+.|.... ..+.+.|++||.|.+ ..+.+. + .+ ....+-.|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4588888976654 667788999999875 211110 0 00 135688999999999999999 59999
Q ss_pred ccCeEEEEeeec
Q 021890 166 FEGRTLKVNYAK 177 (306)
Q Consensus 166 ~~g~~l~v~~~~ 177 (306)
|.|.-|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877777654
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.40 E-value=0.063 Score=49.51 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=40.1
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHH
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~ 255 (306)
.++|+|. .+...++.+|.+.|.+| |.|.++....+. | -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~-g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQF-GPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGG-SCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhc-CCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4679997 78899999999999998 999988665432 2 599999999999887765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.28 E-value=1.4 Score=41.23 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=45.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 162 (306)
...++|+ +|..+...+|.++|+.||.+ +|+++. ...|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc------CCeEEEEECCHHHHHHHHHHHH
Confidence 3567776 89999999999999999954 566543 4579999999999999999874
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.59 E-value=5 Score=37.41 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=42.9
Q ss_pred ceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 021890 195 FNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQG 259 (306)
Q Consensus 195 ~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g 259 (306)
..++|+ ++..+...+|.++|+.| |.+ +|+++- ...|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~f-g~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAF-GNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGG-CCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhc-CCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 456665 88899999999999998 643 444442 23599999999999999998853
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.72 E-value=4.3 Score=26.89 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHhcCC----CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCc
Q 021890 205 EARAKDLREFFISEGW----DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSR 273 (306)
Q Consensus 205 ~~t~~~l~~~F~~~~G----~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 273 (306)
.+...+|..++..-.| .|-.+.+. ..|.||+-.. ..+..++..|++..+.|+.++|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3444566666654333 24444443 2479999875 45788999999999999999998764
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=51.58 E-value=21 Score=23.40 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCCHHHHHHHhhhcCC-----eEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEeeec
Q 021890 111 TSTHEDIRALFEQHGT-----VLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNYAK 177 (306)
Q Consensus 111 ~~t~~~L~~~f~~~G~-----i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~~~ 177 (306)
.+...+|..++..-+. |-.|.+. ..|.||+-... .+..+++.|++..+.|+.+.|+.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4566777777764433 5666665 45888888654 4677888899999999999987653
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=50.75 E-value=57 Score=22.36 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=52.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhcCCcccCeEEEEee
Q 021890 100 KTRLVAQNVPWTSTHEDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLESYEFEGRTLKVNY 175 (306)
Q Consensus 100 ~~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 175 (306)
.+-|-|-|+|..+-..++.-...-.|---.|..+ .|-|.|.|.+.++-.-|+..|-+. .+.++.++.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 4668889999999999998888888876667665 678999999999999999876332 344555553
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.76 E-value=65 Score=22.09 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=52.5
Q ss_pred cceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc-------eeCCee
Q 021890 194 TFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGK-------LFMGRP 266 (306)
Q Consensus 194 ~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~-------~i~g~~ 266 (306)
.+-|.|-|+|..+-..++.-..... |---+|..+ .|.|.+.|.+.++-..|+.+|-+. ++.|..
T Consensus 12 nclikiinipqgtlkaevvlavrhl-gyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHL-GYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTT-CCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhc-CeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 4668899999999888877666654 766666654 356999999999999998876332 566776
Q ss_pred EEEeeCcc
Q 021890 267 LRVAPSRQ 274 (306)
Q Consensus 267 l~v~~a~~ 274 (306)
..|--.-+
T Consensus 83 cdvistip 90 (129)
T 4eyt_A 83 CDVISTIP 90 (129)
T ss_dssp EEEECCCC
T ss_pred eeeeecCC
Confidence 66654433
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.63 E-value=39 Score=26.41 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=36.9
Q ss_pred EEEcCCCC---------CCCHHHHHHHh--hhcCCeEEEEEeecCCCCcceEEEEEeCCHH-HHHHHHH
Q 021890 103 LVAQNVPW---------TSTHEDIRALF--EQHGTVLDIELSMHSKNRNRGLAFVTMGSPD-EATAALN 159 (306)
Q Consensus 103 l~V~nL~~---------~~t~~~L~~~f--~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~-~a~~ai~ 159 (306)
+.|-|+|. .....+|++.| ..|.++. ++.+....| +.|+|.|.|..-- --..|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 55667665 24567899977 8999876 444455544 6899999996544 3444554
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.56 E-value=50 Score=22.53 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=39.1
Q ss_pred cCCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 021890 200 ANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 200 ~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~ 256 (306)
-..+...+..+|++.++.++| .|..|..+..+. ...-|+|.+....+|......
T Consensus 28 F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~---~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 28 FIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR---GEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT---SCEEEEEEECTTSCHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC---CceEEEEEcCCCCcHHHHHHh
Confidence 335668888899888887655 788888776543 245699999988777765544
No 409
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=29.41 E-value=1e+02 Score=21.12 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCeeEEEEEecCCCC--CCccEEEEEeCCHHHHHHHHH
Q 021890 210 DLREFFISEGWDVVSAEVIFHDNPR--RSAGYGFVSFKSKKVAETAIS 255 (306)
Q Consensus 210 ~l~~~F~~~~G~v~~v~i~~~~~tg--~~~g~afV~f~~~~~a~~Al~ 255 (306)
.....|++++|.+.--- ...-..| .......|+|.+.+.|.+...
T Consensus 25 ~~~~~l~~~GG~~l~rg-~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 25 RVASTLAKYSGEVLVKG-SVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp HHHHHHHTTTCEEEEEE-ECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEc-ccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 45677788877655433 2111113 246679999999999888764
No 410
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=26.60 E-value=1e+02 Score=23.19 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=36.8
Q ss_pred CCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 021890 201 NLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 201 nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~ 256 (306)
-++...+..+|++.++.++| .|..|..+..+. ...-|||.+....+|......
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~---g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN---GTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT---SCEEEEEEECTTCCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC---CceEEEEEeCCCCcHHHHHHh
Confidence 34567778888877776544 788888776553 244699999887777765443
No 411
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.42 E-value=8.6 Score=29.39 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=16.1
Q ss_pred HHHHHHhhhcCCeEEEEEeecCCCCcceEEEEEeC
Q 021890 115 EDIRALFEQHGTVLDIELSMHSKNRNRGLAFVTMG 149 (306)
Q Consensus 115 ~~L~~~f~~~G~i~~~~~~~~~~~~~~g~afV~f~ 149 (306)
+|+.++|...|.|+.. .. .+|||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC----CCCeeEEeeC
Confidence 4555666666766533 22 3899999976
No 412
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=25.49 E-value=1e+02 Score=23.34 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=36.6
Q ss_pred CChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 021890 202 LSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISA 256 (306)
Q Consensus 202 L~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~ 256 (306)
++...+..+|++.++.++| .|..|..+..+. ...-|||.+....+|......
T Consensus 94 Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~---g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 94 VHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT---GNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp ECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SCEEEEEEECSSSCHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC---CcEEEEEEcCCCCcHHHHHHh
Confidence 4567788888877776544 788888776553 244699999887777765443
No 413
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.23 E-value=59 Score=22.84 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=44.0
Q ss_pred CChhhhHHHHHHHHHhcCCCeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEeeCcc
Q 021890 202 LSFEARAKDLREFFISEGWDVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAISAFQGKLFMGRPLRVAPSRQ 274 (306)
Q Consensus 202 L~~~~t~~~l~~~F~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 274 (306)
++..+..++|..-....+|.-.++... +. -..|-..+.+|..+|++.|+-. -.-+.|+|-...+
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVIN 87 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEEC
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecC
Confidence 455777788877766656887777665 22 2679999999999999987543 3345566655444
No 414
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.98 E-value=62 Score=27.12 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=25.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeEEEEEe
Q 021890 101 TRLVAQNVPWTSTHEDIRALFEQHGTVLDIELS 133 (306)
Q Consensus 101 ~~l~V~nL~~~~t~~~L~~~f~~~G~i~~~~~~ 133 (306)
..+.|+|||+.++..-|.+++.. +.+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45789999999999999999987 666554443
No 415
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=24.95 E-value=1.3e+02 Score=21.23 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHhhh-cCC---eEEEEEeecC--CCCcceEEEEEeCCHHHHHH
Q 021890 110 WTSTHEDIRALFEQ-HGT---VLDIELSMHS--KNRNRGLAFVTMGSPDEATA 156 (306)
Q Consensus 110 ~~~t~~~L~~~f~~-~G~---i~~~~~~~~~--~~~~~g~afV~f~~~~~a~~ 156 (306)
.+.+..+|++.+.. |+. ++-+.=++.. .|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888877764 443 2223223333 3566777765 777777654
No 416
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.64 E-value=89 Score=21.20 Aligned_cols=53 Identities=8% Similarity=-0.059 Sum_probs=36.4
Q ss_pred ecCCChhhhHHHHHHHHHhcCC-CeeEEEEEecCCCCCCccEEEEEeCCHHHHHHHH
Q 021890 199 IANLSFEARAKDLREFFISEGW-DVVSAEVIFHDNPRRSAGYGFVSFKSKKVAETAI 254 (306)
Q Consensus 199 V~nL~~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~~~a~~Al 254 (306)
+-..+...+..+|++.++.++| .|..|..+..+. ...-|+|.+...++|....
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHHHH
Confidence 3345667888888888876544 788888776542 2456999998776655443
No 417
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.27 E-value=68 Score=30.72 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHhh----hcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 021890 107 NVPWTSTHEDIRALFE----QHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALNNLE 162 (306)
Q Consensus 107 nL~~~~t~~~L~~~f~----~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 162 (306)
..+.+.+--||..+|- .+|.|.++.+...+......++++.|.+.++|..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 3455555557888884 5788999888766655567789999999999999887653
No 418
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=24.12 E-value=1.3e+02 Score=21.31 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhhh-cCC---eEEEEEeecC--CCCcceEEEEEeCCHHHHHH
Q 021890 110 WTSTHEDIRALFEQ-HGT---VLDIELSMHS--KNRNRGLAFVTMGSPDEATA 156 (306)
Q Consensus 110 ~~~t~~~L~~~f~~-~G~---i~~~~~~~~~--~~~~~g~afV~f~~~~~a~~ 156 (306)
...+..+|++.+.. |+. ++-|.=++.. .|++.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46788888776653 454 2222223333 3567777766 777777664
No 419
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.52 E-value=58 Score=30.12 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=31.2
Q ss_pred HHHHHh--hhcCCeEEEEEeecCCCCcceEEEEEeCCHHHHHHHHH
Q 021890 116 DIRALF--EQHGTVLDIELSMHSKNRNRGLAFVTMGSPDEATAALN 159 (306)
Q Consensus 116 ~L~~~f--~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~a~~ai~ 159 (306)
+|..+| +.+|.|.++.+...+.......+++.|.+.+++..|+.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 456666 36899999888766554455678899999887766443
No 420
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=20.75 E-value=1.5e+02 Score=22.65 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=28.4
Q ss_pred CCHHHHHHHhhhcCCe---EEEEEeecC-CCCcceEEEEE
Q 021890 112 STHEDIRALFEQHGTV---LDIELSMHS-KNRNRGLAFVT 147 (306)
Q Consensus 112 ~t~~~L~~~f~~~G~i---~~~~~~~~~-~~~~~g~afV~ 147 (306)
.++++|+++-...|.+ +++.+..+. +|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5889999999999985 456666675 78888888764
No 421
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=20.27 E-value=4.1e+02 Score=25.05 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=41.2
Q ss_pred cCeEEEEeeecccCCCCCCCCCCCCCccceeeecCCChhhhHHHHHHHHHhcCCCeeEEEEEecC
Q 021890 167 EGRTLKVNYAKIKKKNPFPPVQPKPFATFNLFIANLSFEARAKDLREFFISEGWDVVSAEVIFHD 231 (306)
Q Consensus 167 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~~G~v~~v~i~~~~ 231 (306)
.+++|.|.++.+.... -++||++-..+--+-|..+++..+-.|..+..+.|.
T Consensus 141 ~~~~V~ve~~spN~~~-------------plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAK-------------PFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp SCCEEEEECCCCBTTS-------------CCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred CCCeEEEEecCCCCCC-------------CCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 4678999998765443 499999999999999999999653478888777764
Done!