Query 021892
Match_columns 306
No_of_seqs 311 out of 927
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 3.3E-80 7.1E-85 595.1 27.6 288 1-306 69-356 (356)
2 KOG1309 Suppressor of G2 allel 100.0 1.3E-70 2.8E-75 469.2 16.3 195 104-304 2-196 (196)
3 COG5091 SGT1 Suppressor of G2 100.0 4.5E-56 9.7E-61 401.9 14.6 282 3-304 80-368 (368)
4 PF05002 SGS: SGS domain ; In 100.0 5.7E-42 1.2E-46 261.5 0.8 81 224-304 2-82 (82)
5 KOG3260 Calcyclin-binding prot 99.9 4.5E-25 9.8E-30 189.2 12.6 139 107-277 76-215 (224)
6 cd06488 p23_melusin_like p23_l 99.9 1.6E-23 3.6E-28 163.0 10.7 87 106-192 1-87 (87)
7 cd06489 p23_CS_hSgt1_like p23_ 99.9 8.3E-22 1.8E-26 152.1 9.7 84 109-192 1-84 (84)
8 cd00237 p23 p23 binds heat sho 99.9 2.8E-21 6E-26 156.0 10.8 102 107-231 3-105 (106)
9 cd06465 p23_hB-ind1_like p23_l 99.8 4.7E-20 1E-24 148.9 10.7 87 107-195 2-90 (108)
10 cd06468 p23_CacyBP p23_like do 99.8 2.3E-19 4.9E-24 140.5 11.0 86 107-192 3-92 (92)
11 cd06466 p23_CS_SGT1_like p23_l 99.8 2.1E-19 4.6E-24 137.7 9.8 84 109-192 1-84 (84)
12 cd06490 p23_NCB5OR p23_like do 99.8 9.1E-19 2E-23 136.5 10.3 83 108-192 1-87 (87)
13 PF04969 CS: CS domain; Inter 99.7 1.7E-16 3.7E-21 119.2 10.5 77 106-182 1-79 (79)
14 cd06469 p23_DYX1C1_like p23_li 99.7 1.7E-16 3.6E-21 120.2 9.2 78 110-192 1-78 (78)
15 cd06463 p23_like Proteins cont 99.7 3.4E-16 7.3E-21 118.4 10.0 83 110-192 1-84 (84)
16 cd06493 p23_NUDCD1_like p23_NU 99.6 1E-15 2.2E-20 118.5 9.7 82 108-192 1-85 (85)
17 cd06467 p23_NUDC_like p23_like 99.6 1.4E-15 2.9E-20 117.0 9.7 81 108-191 1-84 (85)
18 KOG3158 HSP90 co-chaperone p23 99.6 3.3E-16 7.1E-21 134.2 5.4 104 107-233 9-114 (180)
19 KOG1667 Zn2+-binding protein M 99.5 2.2E-14 4.8E-19 129.4 8.7 92 104-195 213-305 (320)
20 cd06494 p23_NUDCD2_like p23-li 99.5 1.5E-13 3.3E-18 108.4 9.6 81 107-191 7-92 (93)
21 cd06492 p23_mNUDC_like p23-lik 99.3 9.5E-12 2.1E-16 97.0 9.5 82 108-192 1-87 (87)
22 cd06495 p23_NUDCD3_like p23-li 99.3 1.4E-11 3E-16 98.8 10.5 89 107-195 6-97 (102)
23 cd00298 ACD_sHsps_p23-like Thi 99.1 1.9E-10 4.2E-15 84.7 7.5 73 110-182 1-80 (80)
24 KOG2265 Nuclear distribution p 98.9 1E-08 2.2E-13 88.6 9.7 88 106-196 19-110 (179)
25 KOG0376 Serine-threonine phosp 98.5 2.3E-08 4.9E-13 98.4 0.2 254 1-305 71-327 (476)
26 PF00515 TPR_1: Tetratricopept 98.2 1E-06 2.2E-11 55.7 2.0 34 2-35 1-34 (34)
27 KOG0543 FKBP-type peptidyl-pro 98.1 3.4E-06 7.3E-11 81.8 5.2 52 1-52 290-341 (397)
28 PF07719 TPR_2: Tetratricopept 98.0 5.6E-06 1.2E-10 51.8 2.7 34 2-35 1-34 (34)
29 cd06472 ACD_ScHsp26_like Alpha 97.8 0.0001 2.2E-09 57.6 8.3 76 107-182 1-92 (92)
30 COG0071 IbpA Molecular chapero 97.8 0.00014 2.9E-09 61.8 9.5 81 105-185 40-135 (146)
31 cd06471 ACD_LpsHSP_like Group 97.5 0.0006 1.3E-08 53.1 8.0 75 107-182 2-93 (93)
32 PF13414 TPR_11: TPR repeat; P 97.5 0.00012 2.5E-09 53.1 3.5 50 1-50 2-51 (69)
33 cd06464 ACD_sHsps-like Alpha-c 97.5 0.00065 1.4E-08 51.4 7.6 74 109-182 1-88 (88)
34 PF00011 HSP20: Hsp20/alpha cr 97.4 0.0012 2.5E-08 52.1 9.2 77 109-185 1-90 (102)
35 KOG0553 TPR repeat-containing 97.4 0.00014 3E-09 68.3 4.5 51 2-52 149-199 (304)
36 KOG0548 Molecular co-chaperone 97.3 0.0002 4.3E-09 71.6 3.7 48 2-49 426-473 (539)
37 PF13181 TPR_8: Tetratricopept 97.2 0.00021 4.6E-09 44.7 1.9 32 2-33 1-32 (34)
38 smart00028 TPR Tetratricopepti 97.1 0.00044 9.6E-09 40.4 2.7 33 2-34 1-33 (34)
39 KOG4379 Uncharacterized conser 97.1 0.0012 2.5E-08 65.0 6.6 87 106-196 290-379 (596)
40 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0038 8.3E-08 44.1 4.9 50 3-52 2-51 (53)
41 PF13414 TPR_11: TPR repeat; P 96.6 0.001 2.2E-08 48.0 1.6 32 2-33 37-69 (69)
42 cd06475 ACD_HspB1_like Alpha c 96.5 0.016 3.4E-07 44.9 7.7 72 109-180 4-84 (86)
43 cd06526 metazoan_ACD Alpha-cry 96.5 0.013 2.7E-07 44.8 7.0 68 115-182 7-83 (83)
44 cd06479 ACD_HspB7_like Alpha c 96.5 0.015 3.3E-07 44.6 7.4 72 111-182 4-81 (81)
45 KOG0548 Molecular co-chaperone 96.4 0.0028 6.1E-08 63.6 4.0 45 2-46 70-114 (539)
46 PF13432 TPR_16: Tetratricopep 96.4 0.0018 4E-08 46.3 1.9 44 6-49 1-44 (65)
47 cd06497 ACD_alphaA-crystallin_ 96.4 0.017 3.7E-07 44.7 7.3 72 111-182 6-86 (86)
48 KOG0546 HSP90 co-chaperone CPR 96.3 0.0044 9.6E-08 59.6 4.3 51 2-52 309-359 (372)
49 TIGR02552 LcrH_SycD type III s 96.2 0.0081 1.8E-07 48.7 5.0 48 3-50 86-133 (135)
50 PF13371 TPR_9: Tetratricopept 96.2 0.0047 1E-07 44.9 3.2 43 2-44 29-71 (73)
51 cd06498 ACD_alphaB-crystallin_ 96.1 0.028 6E-07 43.3 7.3 71 113-183 5-84 (84)
52 PF13428 TPR_14: Tetratricopep 96.1 0.0064 1.4E-07 40.6 3.2 38 3-40 2-39 (44)
53 PF13174 TPR_6: Tetratricopept 96.0 0.0045 9.8E-08 37.9 2.1 32 3-34 1-32 (33)
54 cd06478 ACD_HspB4-5-6 Alpha-cr 95.9 0.037 8E-07 42.5 7.0 71 112-182 4-83 (83)
55 cd06470 ACD_IbpA-B_like Alpha- 95.9 0.076 1.6E-06 41.2 8.9 72 108-181 3-89 (90)
56 PRK15359 type III secretion sy 95.6 0.022 4.8E-07 47.8 5.3 36 3-38 93-128 (144)
57 PRK10743 heat shock protein Ib 95.6 0.11 2.3E-06 43.9 9.3 76 106-183 35-124 (137)
58 PF13432 TPR_16: Tetratricopep 95.3 0.021 4.6E-07 40.6 3.4 35 2-36 31-65 (65)
59 PF14559 TPR_19: Tetratricopep 95.0 0.022 4.8E-07 40.7 2.9 41 2-42 25-65 (68)
60 cd06476 ACD_HspB2_like Alpha c 94.9 0.16 3.4E-06 39.1 7.5 70 113-182 5-83 (83)
61 cd06481 ACD_HspB9_like Alpha c 94.7 0.14 3E-06 39.7 6.8 67 114-180 6-85 (87)
62 PRK11597 heat shock chaperone 94.7 0.28 6E-06 41.7 9.1 75 107-183 34-122 (142)
63 PF13176 TPR_7: Tetratricopept 94.2 0.03 6.5E-07 35.8 1.7 28 4-31 1-28 (36)
64 PF08190 PIH1: pre-RNA process 93.9 0.29 6.3E-06 46.3 8.6 65 114-181 260-327 (328)
65 PRK15359 type III secretion sy 93.5 0.11 2.4E-06 43.5 4.4 47 2-48 58-104 (144)
66 KOG0545 Aryl-hydrocarbon recep 93.4 0.1 2.2E-06 48.4 4.4 52 1-52 263-315 (329)
67 TIGR02552 LcrH_SycD type III s 93.3 0.12 2.6E-06 41.7 4.2 43 3-45 52-94 (135)
68 PF12895 Apc3: Anaphase-promot 93.2 0.033 7.1E-07 42.0 0.6 48 3-51 26-73 (84)
69 cd06482 ACD_HspB10 Alpha cryst 93.0 0.46 9.9E-06 36.9 6.8 65 114-178 7-83 (87)
70 PRK10370 formate-dependent nit 92.8 0.16 3.4E-06 45.1 4.5 45 1-45 72-116 (198)
71 PRK11189 lipoprotein NlpI; Pro 92.8 0.15 3.2E-06 47.9 4.5 41 2-42 132-172 (296)
72 cd00189 TPR Tetratricopeptide 92.8 0.26 5.5E-06 34.7 4.9 45 4-48 2-46 (100)
73 PLN03098 LPA1 LOW PSII ACCUMUL 92.7 0.19 4E-06 50.3 5.3 36 2-37 75-110 (453)
74 PF13424 TPR_12: Tetratricopep 92.6 0.079 1.7E-06 39.0 2.0 30 2-31 46-75 (78)
75 KOG0550 Molecular chaperone (D 92.3 0.16 3.6E-06 50.1 4.2 50 2-52 321-370 (486)
76 PF10516 SHNi-TPR: SHNi-TPR; 92.2 0.11 2.4E-06 34.2 2.1 30 2-31 1-30 (38)
77 PF13424 TPR_12: Tetratricopep 92.1 0.11 2.3E-06 38.3 2.2 30 2-31 5-34 (78)
78 cd06477 ACD_HspB3_Like Alpha c 92.1 1.1 2.5E-05 34.4 7.9 67 113-179 5-80 (83)
79 PLN03088 SGT1, suppressor of 92.1 0.22 4.7E-06 48.3 4.8 48 2-49 36-83 (356)
80 KOG4234 TPR repeat-containing 92.1 0.17 3.6E-06 45.8 3.6 50 3-52 169-218 (271)
81 KOG0547 Translocase of outer m 91.6 0.16 3.4E-06 51.2 3.3 47 1-49 393-439 (606)
82 cd00189 TPR Tetratricopeptide 91.3 0.44 9.6E-06 33.4 4.7 43 3-45 35-77 (100)
83 PRK15363 pathogenicity island 91.2 0.33 7.1E-06 42.0 4.4 51 2-52 69-119 (157)
84 PF13431 TPR_17: Tetratricopep 91.0 0.097 2.1E-06 33.2 0.8 22 1-22 12-33 (34)
85 PF12895 Apc3: Anaphase-promot 90.0 0.2 4.2E-06 37.6 1.8 26 3-28 59-84 (84)
86 PF13374 TPR_10: Tetratricopep 90.0 0.26 5.6E-06 31.3 2.2 30 2-31 2-31 (42)
87 TIGR02795 tol_pal_ybgF tol-pal 89.7 0.31 6.7E-06 37.7 2.9 33 3-35 40-72 (119)
88 KOG3364 Membrane protein invol 89.7 0.58 1.2E-05 39.7 4.5 49 4-52 73-121 (149)
89 PRK15363 pathogenicity island 89.3 0.68 1.5E-05 40.0 4.9 52 1-52 102-153 (157)
90 TIGR02795 tol_pal_ybgF tol-pal 88.8 0.7 1.5E-05 35.7 4.3 48 2-49 2-52 (119)
91 PRK02603 photosystem I assembl 88.2 0.75 1.6E-05 39.3 4.5 34 4-37 74-107 (172)
92 PRK11189 lipoprotein NlpI; Pro 88.1 0.7 1.5E-05 43.4 4.5 34 3-36 99-132 (296)
93 KOG4648 Uncharacterized conser 88.0 0.54 1.2E-05 45.7 3.6 51 2-52 165-215 (536)
94 cd06480 ACD_HspB8_like Alpha-c 87.7 4.2 9.1E-05 31.9 8.0 65 115-179 15-88 (91)
95 KOG1126 DNA-binding cell divis 87.2 0.65 1.4E-05 48.0 3.9 50 3-52 490-539 (638)
96 PF05455 GvpH: GvpH; InterPro 86.6 4.7 0.0001 35.5 8.5 75 108-185 94-170 (177)
97 PF14559 TPR_19: Tetratricopep 86.6 0.85 1.8E-05 32.2 3.3 40 12-51 1-40 (68)
98 PRK15331 chaperone protein Sic 86.5 1.3 2.8E-05 38.6 4.9 48 3-51 106-153 (165)
99 PRK02603 photosystem I assembl 86.0 0.56 1.2E-05 40.1 2.4 34 2-35 35-68 (172)
100 TIGR00990 3a0801s09 mitochondr 85.0 1.2 2.5E-05 46.0 4.6 35 2-36 399-433 (615)
101 PRK10803 tol-pal system protei 84.4 1.2 2.7E-05 41.4 4.0 36 2-37 180-215 (263)
102 PF13371 TPR_9: Tetratricopept 84.4 1.7 3.6E-05 31.1 4.0 44 9-52 2-45 (73)
103 TIGR02521 type_IV_pilW type IV 83.2 1.8 4E-05 36.6 4.5 41 2-42 31-71 (234)
104 PRK12370 invasion protein regu 83.2 1.5 3.3E-05 44.8 4.5 36 2-37 372-407 (553)
105 TIGR02521 type_IV_pilW type IV 83.0 1.8 3.8E-05 36.7 4.2 44 2-45 65-108 (234)
106 TIGR03302 OM_YfiO outer membra 82.7 2.3 4.9E-05 37.7 5.0 49 2-50 33-82 (235)
107 TIGR03302 OM_YfiO outer membra 82.7 1.1 2.3E-05 39.8 2.9 36 3-38 71-106 (235)
108 KOG2076 RNA polymerase III tra 82.3 1.5 3.3E-05 46.9 4.1 51 2-52 449-499 (895)
109 PF07720 TPR_3: Tetratricopept 81.3 1.6 3.5E-05 28.1 2.5 33 3-35 2-36 (36)
110 PRK10153 DNA-binding transcrip 81.3 1.8 3.9E-05 44.2 4.2 39 2-40 453-491 (517)
111 PRK10866 outer membrane biogen 81.0 1.5 3.3E-05 40.2 3.2 36 3-38 70-105 (243)
112 CHL00033 ycf3 photosystem I as 80.8 3.2 7E-05 35.1 5.0 32 4-35 74-105 (168)
113 PRK12370 invasion protein regu 80.3 2.1 4.6E-05 43.8 4.3 45 1-45 337-381 (553)
114 TIGR00990 3a0801s09 mitochondr 78.8 2.9 6.2E-05 43.2 4.8 34 3-36 332-365 (615)
115 CHL00033 ycf3 photosystem I as 78.8 3 6.5E-05 35.3 4.2 34 2-35 35-68 (168)
116 KOG0547 Translocase of outer m 78.2 3.2 6.9E-05 42.1 4.6 49 2-50 115-163 (606)
117 PF13429 TPR_15: Tetratricopep 77.7 2.5 5.4E-05 38.8 3.6 39 2-40 146-184 (280)
118 KOG0624 dsRNA-activated protei 77.5 3.5 7.6E-05 40.3 4.5 51 2-52 341-391 (504)
119 TIGR02917 PEP_TPR_lipo putativ 77.4 2.9 6.3E-05 43.2 4.3 41 2-42 56-96 (899)
120 PF13429 TPR_15: Tetratricopep 76.4 2.7 5.9E-05 38.5 3.4 42 4-45 216-257 (280)
121 PF07721 TPR_4: Tetratricopept 74.2 2.6 5.7E-05 24.7 1.8 24 3-26 2-25 (26)
122 PF13525 YfiO: Outer membrane 72.8 3.1 6.8E-05 36.7 2.8 35 3-37 43-77 (203)
123 COG3063 PilF Tfp pilus assembl 72.7 3.1 6.7E-05 38.3 2.7 45 2-48 35-79 (250)
124 cd02682 MIT_AAA_Arch MIT: doma 71.7 9.9 0.00021 28.8 4.9 50 2-51 6-62 (75)
125 PF12688 TPR_5: Tetratrico pep 71.7 6.2 0.00013 32.4 4.1 32 3-34 39-70 (120)
126 PRK11447 cellulose synthase su 71.0 5 0.00011 44.9 4.4 40 2-41 303-342 (1157)
127 PRK15179 Vi polysaccharide bio 70.7 5.9 0.00013 42.1 4.7 43 2-44 154-196 (694)
128 TIGR02917 PEP_TPR_lipo putativ 70.1 5.4 0.00012 41.2 4.2 47 2-48 22-68 (899)
129 PF13512 TPR_18: Tetratricopep 69.1 4.3 9.3E-05 34.5 2.7 35 3-37 48-82 (142)
130 PRK09782 bacteriophage N4 rece 68.3 8.4 0.00018 42.6 5.4 50 2-51 677-729 (987)
131 KOG1125 TPR repeat-containing 66.6 6.8 0.00015 40.3 3.9 45 1-45 318-362 (579)
132 PF09976 TPR_21: Tetratricopep 66.6 7.8 0.00017 32.0 3.8 33 3-35 49-81 (145)
133 PF06552 TOM20_plant: Plant sp 65.9 5.9 0.00013 35.1 3.0 46 2-47 69-125 (186)
134 COG4785 NlpI Lipoprotein NlpI, 65.5 6.9 0.00015 36.1 3.4 48 4-51 135-182 (297)
135 KOG1126 DNA-binding cell divis 65.3 8.9 0.00019 40.0 4.5 51 2-52 557-607 (638)
136 KOG0551 Hsp90 co-chaperone CNS 63.8 9.2 0.0002 37.1 4.0 39 1-39 152-204 (390)
137 PF08238 Sel1: Sel1 repeat; I 63.7 7.3 0.00016 24.2 2.4 31 2-32 1-38 (39)
138 PRK11906 transcriptional regul 63.3 6.3 0.00014 39.7 3.0 38 1-38 337-374 (458)
139 PF04733 Coatomer_E: Coatomer 62.6 5.7 0.00012 37.5 2.4 35 3-37 202-236 (290)
140 PRK15174 Vi polysaccharide exp 62.2 10 0.00023 39.7 4.5 41 3-43 285-325 (656)
141 PRK15174 Vi polysaccharide exp 62.0 10 0.00022 39.8 4.4 42 2-43 110-151 (656)
142 KOG0551 Hsp90 co-chaperone CNS 61.8 10 0.00022 36.8 4.0 51 1-51 118-168 (390)
143 KOG4648 Uncharacterized conser 61.3 9.8 0.00021 37.3 3.8 31 7-37 102-132 (536)
144 PRK14720 transcript cleavage f 60.7 9 0.0002 41.8 3.8 40 3-42 117-156 (906)
145 PF10602 RPN7: 26S proteasome 60.6 11 0.00025 32.7 3.9 50 3-52 37-87 (177)
146 PF13525 YfiO: Outer membrane 60.3 8.8 0.00019 33.8 3.1 35 2-36 5-39 (203)
147 cd02678 MIT_VPS4 MIT: domain c 60.2 20 0.00043 26.7 4.6 50 2-51 6-62 (75)
148 KOG1310 WD40 repeat protein [G 59.3 5.7 0.00012 40.8 1.9 50 2-51 445-494 (758)
149 KOG0624 dsRNA-activated protei 58.9 4.6 9.9E-05 39.5 1.1 32 3-34 73-104 (504)
150 COG5010 TadD Flp pilus assembl 58.5 9 0.0002 35.7 2.9 36 2-37 134-169 (257)
151 PRK09782 bacteriophage N4 rece 58.2 13 0.00028 41.1 4.6 45 2-46 643-687 (987)
152 PRK10747 putative protoheme IX 58.1 13 0.00028 36.3 4.2 49 2-51 328-376 (398)
153 KOG3785 Uncharacterized conser 57.7 14 0.0003 36.4 4.1 47 6-52 61-107 (557)
154 PRK15331 chaperone protein Sic 57.4 9.9 0.00021 33.1 2.8 46 6-51 75-120 (165)
155 cd02683 MIT_1 MIT: domain cont 57.1 23 0.00049 26.7 4.5 49 2-50 6-61 (77)
156 PF09976 TPR_21: Tetratricopep 56.8 22 0.00048 29.2 4.8 25 3-27 86-110 (145)
157 PF04010 DUF357: Protein of un 56.8 8.2 0.00018 29.1 2.0 29 1-29 34-62 (75)
158 PRK10866 outer membrane biogen 56.7 14 0.0003 33.8 3.9 50 2-51 32-84 (243)
159 KOG1128 Uncharacterized conser 55.6 13 0.00028 39.4 3.7 43 3-47 520-562 (777)
160 cd02681 MIT_calpain7_1 MIT: do 55.3 30 0.00065 26.1 4.8 50 2-51 6-63 (76)
161 PRK11788 tetratricopeptide rep 55.1 18 0.0004 34.2 4.6 36 3-38 108-143 (389)
162 COG4235 Cytochrome c biogenesi 54.9 16 0.00036 34.6 4.1 42 2-43 156-197 (287)
163 KOG1125 TPR repeat-containing 54.4 11 0.00023 38.9 2.9 37 2-38 430-466 (579)
164 PF12569 NARP1: NMDA receptor- 54.3 14 0.0003 37.9 3.8 38 3-40 229-266 (517)
165 smart00671 SEL1 Sel1-like repe 54.2 17 0.00037 21.9 2.9 31 2-32 1-35 (36)
166 PF12688 TPR_5: Tetratrico pep 53.0 17 0.00037 29.7 3.4 36 2-37 1-36 (120)
167 PRK11906 transcriptional regul 52.9 12 0.00025 37.8 2.8 50 2-51 372-425 (458)
168 PF04212 MIT: MIT (microtubule 52.5 31 0.00068 24.9 4.5 49 2-50 5-60 (69)
169 COG1729 Uncharacterized protei 50.6 25 0.00053 33.0 4.4 37 2-38 178-214 (262)
170 KOG0553 TPR repeat-containing 50.5 13 0.00028 35.5 2.6 45 6-50 85-129 (304)
171 PLN03098 LPA1 LOW PSII ACCUMUL 50.3 12 0.00026 37.7 2.4 29 3-31 113-141 (453)
172 cd02656 MIT MIT: domain contai 50.2 36 0.00078 25.0 4.5 49 3-51 7-62 (75)
173 PF12569 NARP1: NMDA receptor- 50.1 24 0.00053 36.1 4.8 48 4-51 196-243 (517)
174 PF14098 SSPI: Small, acid-sol 49.8 19 0.00041 26.6 2.8 26 247-272 37-62 (65)
175 PRK11788 tetratricopeptide rep 49.6 22 0.00047 33.7 4.1 35 4-38 37-71 (389)
176 PRK11447 cellulose synthase su 49.3 21 0.00045 40.0 4.4 38 2-39 385-422 (1157)
177 smart00386 HAT HAT (Half-A-TPR 49.2 35 0.00077 19.6 3.7 31 16-48 1-31 (33)
178 PF03704 BTAD: Bacterial trans 48.9 25 0.00053 28.7 3.9 47 3-49 63-109 (146)
179 COG4856 Uncharacterized protei 48.4 49 0.0011 32.6 6.2 75 111-186 64-138 (403)
180 PRK10803 tol-pal system protei 48.2 25 0.00054 32.7 4.2 49 3-51 143-195 (263)
181 PRK15179 Vi polysaccharide bio 46.1 25 0.00053 37.5 4.2 34 2-35 86-119 (694)
182 PF04818 CTD_bind: RNA polymer 45.8 26 0.00056 24.9 3.1 24 247-270 30-53 (64)
183 KOG3081 Vesicle coat complex C 44.8 20 0.00043 33.9 2.8 33 6-38 211-243 (299)
184 TIGR03092 SASP_sspI small, aci 44.3 21 0.00046 26.3 2.3 26 247-272 36-61 (65)
185 PF08158 NUC130_3NT: NUC130/3N 44.3 34 0.00074 24.0 3.4 27 246-272 18-44 (52)
186 KOG1174 Anaphase-promoting com 44.2 28 0.00061 35.0 3.9 45 6-50 475-519 (564)
187 PRK10049 pgaA outer membrane p 43.8 31 0.00067 36.8 4.6 39 2-40 393-431 (765)
188 PLN02789 farnesyltranstransfer 43.8 24 0.00051 33.8 3.3 41 2-44 71-112 (320)
189 PLN02789 farnesyltranstransfer 43.6 19 0.00041 34.5 2.7 33 3-35 143-175 (320)
190 PF09829 DUF2057: Uncharacteri 43.0 18 0.00039 31.7 2.2 24 246-269 165-188 (189)
191 cd05804 StaR_like StaR_like; a 43.0 44 0.00095 31.2 5.0 29 8-36 120-148 (355)
192 COG3063 PilF Tfp pilus assembl 42.9 35 0.00076 31.6 4.1 43 3-45 140-182 (250)
193 KOG4162 Predicted calmodulin-b 42.2 35 0.00077 36.5 4.5 49 2-50 684-732 (799)
194 KOG0550 Molecular chaperone (D 41.7 31 0.00068 34.5 3.8 46 1-46 202-247 (486)
195 smart00745 MIT Microtubule Int 40.6 65 0.0014 23.6 4.7 28 3-30 9-36 (77)
196 KOG2002 TPR-containing nuclear 40.5 23 0.00051 38.7 3.0 47 2-48 307-359 (1018)
197 KOG4555 TPR repeat-containing 40.4 21 0.00045 30.6 2.1 32 3-34 116-147 (175)
198 KOG1155 Anaphase-promoting com 40.4 47 0.001 33.8 4.8 50 3-52 399-448 (559)
199 PRK10049 pgaA outer membrane p 39.9 36 0.00078 36.3 4.3 40 5-44 119-158 (765)
200 KOG1173 Anaphase-promoting com 39.4 35 0.00075 35.4 3.8 45 7-51 460-504 (611)
201 PRK02955 small acid-soluble sp 38.7 27 0.00058 26.0 2.2 25 247-271 39-63 (68)
202 COG5010 TadD Flp pilus assembl 37.7 42 0.00092 31.3 3.8 44 8-51 106-149 (257)
203 PF03745 DUF309: Domain of unk 37.2 30 0.00064 25.0 2.2 45 5-49 2-48 (62)
204 cd09243 BRO1_Brox_like Protein 37.1 24 0.00051 34.5 2.2 29 2-30 248-276 (353)
205 COG1849 Uncharacterized protei 37.0 28 0.0006 27.3 2.2 29 1-29 40-68 (90)
206 cd05804 StaR_like StaR_like; a 35.8 58 0.0013 30.3 4.7 49 3-51 149-199 (355)
207 cd09241 BRO1_ScRim20-like Prot 35.7 56 0.0012 31.7 4.6 51 2-52 237-299 (355)
208 KOG1840 Kinesin light chain [C 35.6 25 0.00054 36.0 2.2 30 2-31 283-312 (508)
209 COG4700 Uncharacterized protei 35.4 53 0.0012 29.8 3.9 47 4-50 91-138 (251)
210 PF12862 Apc5: Anaphase-promot 34.8 30 0.00065 26.6 2.1 30 3-32 42-71 (94)
211 cd09240 BRO1_Alix Protein-inte 34.4 51 0.0011 31.8 4.1 51 2-52 255-312 (346)
212 PF14561 TPR_20: Tetratricopep 34.1 47 0.001 25.7 3.1 33 2-34 22-54 (90)
213 PF10579 Rapsyn_N: Rapsyn N-te 34.0 44 0.00095 25.7 2.8 33 2-34 6-38 (80)
214 PF06552 TOM20_plant: Plant sp 33.8 27 0.00058 31.1 1.8 34 2-35 25-68 (186)
215 KOG0543 FKBP-type peptidyl-pro 33.6 38 0.00082 33.6 3.0 34 7-40 213-246 (397)
216 KOG4507 Uncharacterized conser 33.6 46 0.001 34.9 3.7 43 3-45 677-719 (886)
217 PF14938 SNAP: Soluble NSF att 33.1 40 0.00086 31.2 3.0 48 4-52 198-245 (282)
218 PF06543 Lac_bphage_repr: Lact 32.8 32 0.0007 23.7 1.7 9 223-231 17-25 (49)
219 KOG3591 Alpha crystallins [Pos 32.6 3.3E+02 0.0072 23.8 8.5 70 114-183 71-149 (173)
220 PF09295 ChAPs: ChAPs (Chs5p-A 32.5 37 0.0008 33.6 2.8 43 8-52 240-282 (395)
221 TIGR00540 hemY_coli hemY prote 32.2 61 0.0013 31.6 4.3 34 5-38 338-373 (409)
222 KOG4234 TPR repeat-containing 32.1 66 0.0014 29.5 4.0 31 4-34 136-166 (271)
223 KOG4642 Chaperone-dependent E3 31.7 52 0.0011 30.8 3.4 48 5-52 13-60 (284)
224 PF02985 HEAT: HEAT repeat; I 31.3 91 0.002 18.7 3.5 24 249-272 2-25 (31)
225 PF02259 FAT: FAT domain; Int 31.0 65 0.0014 29.9 4.1 51 2-52 252-309 (352)
226 PF14938 SNAP: Soluble NSF att 30.9 43 0.00093 31.0 2.8 49 2-51 114-163 (282)
227 KOG4555 TPR repeat-containing 30.7 47 0.001 28.4 2.7 35 2-36 43-77 (175)
228 PRK10747 putative protoheme IX 30.5 93 0.002 30.3 5.2 44 6-49 157-200 (398)
229 cd02684 MIT_2 MIT: domain cont 30.2 1.1E+02 0.0024 22.8 4.5 29 3-31 7-35 (75)
230 PF02255 PTS_IIA: PTS system, 29.7 37 0.00079 26.8 1.8 30 1-30 13-42 (96)
231 cd02677 MIT_SNX15 MIT: domain 29.6 40 0.00087 25.3 1.9 30 2-31 6-35 (75)
232 cd09242 BRO1_ScBro1_like Prote 29.0 37 0.0008 32.8 2.1 30 2-31 244-273 (348)
233 KOG4626 O-linked N-acetylgluco 28.7 41 0.0009 35.6 2.4 33 2-34 286-318 (966)
234 KOG4642 Chaperone-dependent E3 28.7 33 0.00071 32.1 1.5 31 1-31 77-107 (284)
235 KOG1586 Protein required for f 28.1 1.2E+02 0.0025 28.5 5.0 48 5-52 198-247 (288)
236 COG4235 Cytochrome c biogenesi 28.1 1.2E+02 0.0025 28.9 5.1 46 2-47 227-272 (287)
237 KOG1130 Predicted G-alpha GTPa 27.8 26 0.00057 35.2 0.8 6 117-122 457-462 (639)
238 TIGR00823 EIIA-LAC phosphotran 27.6 51 0.0011 26.2 2.3 30 1-30 16-45 (99)
239 PF10345 Cohesin_load: Cohesin 27.4 93 0.002 32.3 4.9 49 2-51 59-108 (608)
240 cd09245 BRO1_UmRIM23-like Prot 27.3 47 0.001 33.1 2.5 30 2-31 296-325 (413)
241 cd09034 BRO1_Alix_like Protein 27.2 45 0.00098 31.7 2.3 30 2-31 251-280 (345)
242 PRK10153 DNA-binding transcrip 26.9 57 0.0012 33.4 3.1 33 2-34 420-452 (517)
243 cd09246 BRO1_Alix_like_1 Prote 26.7 1.1E+02 0.0023 29.7 4.8 29 2-30 247-275 (353)
244 cd00215 PTS_IIA_lac PTS_IIA, P 26.6 54 0.0012 25.9 2.3 30 1-30 14-43 (97)
245 COG1447 CelC Phosphotransferas 26.4 60 0.0013 26.2 2.5 30 1-30 18-47 (105)
246 cd09239 BRO1_HD-PTP_like Prote 26.0 1E+02 0.0023 30.0 4.6 29 2-30 252-280 (361)
247 KOG4626 O-linked N-acetylgluco 25.7 41 0.00088 35.6 1.8 34 3-36 321-354 (966)
248 PF09061 Stirrup: Stirrup; In 24.7 63 0.0014 23.9 2.1 22 246-267 53-75 (79)
249 KOG1155 Anaphase-promoting com 24.4 1.2E+02 0.0026 31.0 4.7 45 8-52 438-482 (559)
250 KOG1173 Anaphase-promoting com 24.3 97 0.0021 32.2 4.1 43 3-45 490-532 (611)
251 cd03562 CID CID (CTD-Interacti 23.8 88 0.0019 24.7 3.1 26 246-271 78-103 (114)
252 COG4785 NlpI Lipoprotein NlpI, 23.7 76 0.0016 29.5 2.9 42 2-43 65-106 (297)
253 PF07219 HemY_N: HemY protein 23.3 77 0.0017 25.1 2.7 30 3-32 60-89 (108)
254 KOG1127 TPR repeat-containing 22.9 57 0.0012 36.2 2.3 42 2-45 850-891 (1238)
255 TIGR03504 FimV_Cterm FimV C-te 22.8 75 0.0016 21.4 2.1 25 6-30 3-27 (44)
256 KOG1174 Anaphase-promoting com 22.4 62 0.0013 32.7 2.2 48 2-51 334-381 (564)
257 PF13512 TPR_18: Tetratricopep 22.2 84 0.0018 26.7 2.8 33 2-34 10-42 (142)
258 PF03097 BRO1: BRO1-like domai 22.1 60 0.0013 31.2 2.2 30 2-31 239-268 (377)
259 PRK14574 hmsH outer membrane p 22.0 1E+02 0.0022 33.6 4.0 34 3-36 35-68 (822)
260 PRK14574 hmsH outer membrane p 21.9 1.1E+02 0.0023 33.5 4.1 39 4-42 102-142 (822)
261 cd09247 BRO1_Alix_like_2 Prote 21.5 58 0.0013 31.4 1.9 51 2-52 253-312 (346)
262 PRK03641 hypothetical protein; 21.2 84 0.0018 28.4 2.7 26 244-269 187-212 (220)
263 PF13041 PPR_2: PPR repeat fam 21.2 1.4E+02 0.0031 19.5 3.3 34 10-43 11-46 (50)
264 COG0457 NrfG FOG: TPR repeat [ 20.8 91 0.002 24.6 2.7 33 3-35 96-128 (291)
265 KOG1308 Hsp70-interacting prot 20.8 93 0.002 30.5 3.1 47 2-49 182-228 (377)
266 KOG0710 Molecular chaperone (s 20.4 2.4E+02 0.0051 25.0 5.4 42 103-144 80-124 (196)
267 KOG1129 TPR repeat-containing 20.1 92 0.002 30.6 2.8 38 5-42 361-399 (478)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=3.3e-80 Score=595.13 Aligned_cols=288 Identities=73% Similarity=1.141 Sum_probs=238.6
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhhccccCCCCCCCCCcccccCCCCCCCCC
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNI 80 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 80 (306)
++.+|||+|++|+++++|++|+.+|++|.+++|++..+..|+.+|+.+|+......+..... .++. ....
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~~~~--~~~~--~~~~------ 138 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPS--DLPS--SVTA------ 138 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhccccccccc--cccc--cccc------
Confidence 36799999999999999999999999999999999999999999999997753221111000 0100 0000
Q ss_pred CCcccccccccccccccccCCCCCCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccc
Q 021892 81 SSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFG 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~ 160 (306)
... + .. ...+..++..+++||+|||++++|+|+||++|++++++.|+|++++|+|+|..+++..|.|.++||+
T Consensus 139 ~~~----~--~~-~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~ 211 (356)
T PLN03088 139 PPV----E--EA-DATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFG 211 (356)
T ss_pred ccc----c--cc-ccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccc
Confidence 000 0 00 0112234456789999999999999999999999999999999999999998888889999999999
Q ss_pred cccCCCceEEEeCCEEEEEEEeCCCCCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhh
Q 021892 161 KIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 240 (306)
Q Consensus 161 ~I~pe~s~~kv~~~KIEI~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~~~~~e 240 (306)
+|+|+.|+|+|+++||||+|+|+++.+|++|+..+............. ....|+||||+++++|||||+.++++|+++|
T Consensus 212 ~I~p~~s~~~v~~~Kiei~l~K~~~~~W~~L~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e 290 (356)
T PLN03088 212 KIIPDKCKYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSSE-VSQRPAYPSSKKKKDDWDKLEAEVKKEEKDE 290 (356)
T ss_pred cccccccEEEEecceEEEEEecCCCCCccccccCCccccccCCCCCcC-cccCCCCCCCCCCCCChhhhhhhhhhhhhcc
Confidence 999999999999999999999999999999998764332111111111 1356899999888899999999998888888
Q ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcCCeeeccccccccCeeeccCCCCCccccccCC
Q 021892 241 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 306 (306)
Q Consensus 241 ~~eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kkw~~ 306 (306)
++||+++||+||||||+||||||||||||||+|||||||||||+|||+++||++||+|||+|||++
T Consensus 291 ~~~g~~~~~~~f~~iY~~~d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e~k~~~~ 356 (356)
T PLN03088 291 KLDGDAALNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY 356 (356)
T ss_pred ccccchHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCccccCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-70 Score=469.19 Aligned_cols=195 Identities=59% Similarity=0.944 Sum_probs=176.8
Q ss_pred CCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeC
Q 021892 104 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 183 (306)
Q Consensus 104 ~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~ 183 (306)
+++||||||+.+.|+|+||+++|+.++|.|.|+++.|++.+.+++|..|.|.+.|||+|+|+.|+|+++++||||+|.|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhCCCCHHH
Q 021892 184 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDT 263 (306)
Q Consensus 184 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~~~~~e~~eg~a~l~~~fq~iY~~adddt 263 (306)
+.++|..|++..+.......... ...-+||+|+. ++|||+|+.|++++|++++++ |||||+|||+||++|||||
T Consensus 82 ~~irW~~Le~g~~~~~~~~~~vs----~~~s~~Pssk~-~kdWdkl~~e~~~eEe~e~l~-dAAl~~lF~kiY~~addDv 155 (196)
T KOG1309|consen 82 EIIRWESLEKGKGSAVAPKPNVS----STASSYPSSKP-AKDWDKLEKEEKKEEEDEKLE-DAALNKLFQKIYSDADDDV 155 (196)
T ss_pred cchhhhhhhcccCcccccccccc----cccccCCCCCc-ccCHHHHHHHhhhhhhccchh-HHHHHHHHHHHHhcCCHHH
Confidence 89999999974333222111111 22347998876 889999999999999988887 8999999999999999999
Q ss_pred HHHHHHhhhhcCCeeeccccccccCeeeccCCCCCcccccc
Q 021892 264 RRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 304 (306)
Q Consensus 264 kRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kkw 304 (306)
||||||||.|||||||||||+|||+|+||++||+|||+|+|
T Consensus 156 rRAM~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~ 196 (196)
T KOG1309|consen 156 RRAMMKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW 196 (196)
T ss_pred HHHHHhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence 99999999999999999999999999999999999999999
No 3
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=100.00 E-value=4.5e-56 Score=401.94 Aligned_cols=282 Identities=24% Similarity=0.387 Sum_probs=202.9
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhhccccCCCCCCCCCcccccCCCCCCCCCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISS 82 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 82 (306)
.|.||+|+|||++++|+.|..+|..|+.| +.|.+|+.|..+++.+|........+.......|... +..+.
T Consensus 80 ~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~-~~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vE------s~e~~-- 150 (368)
T COG5091 80 LVNFRYFVHFFNIKDYELAQSYFKKAKNL-YVDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVE------SIENR-- 150 (368)
T ss_pred eehhhhHHHhhhHHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHhHhhHhhccccCCCCCCchh------hhhcc--
Confidence 47899999999999999999999999999 8999999999999999988632211111111111100 00000
Q ss_pred ccccccccccccccc---c-cCCCCCC--CCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCC-ceEEEc
Q 021892 83 TEDVETVMDVSNEAA---M-AAPARPK--YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE-EAYHFQ 155 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~---~-~~~~~~k--~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~-~~y~~~ 155 (306)
++.+. .+++-+| . ++...++ ++|+|.||...+.|.||.+-+..++|.+-++++.|+|++..+.+ -.+.+.
T Consensus 151 --GD~~~-~~S~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~ 227 (368)
T COG5091 151 --GDNNS-SHSPISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDIT 227 (368)
T ss_pred --Ccccc-ccCCCCccccccCcccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhh
Confidence 11111 1222222 1 1222344 45555555555555556666777889999999999999987644 446677
Q ss_pred ccccccccCCCceEEEeCCEEEEEEEeCCCCCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhh
Q 021892 156 PRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKK 235 (306)
Q Consensus 156 l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~ 235 (306)
+.||++|+|+.+++++.+.++||.|+|.+..+|..|................ ....+-|+|+.+++||+++..+.
T Consensus 228 ~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S~~l~~e~~---N~~SAt~~s~~k~~Dw~~l~~~~-- 302 (368)
T COG5091 228 ISLYKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADESSRLSDEGK---NSDSATPKSSKKQDDWKELMVED-- 302 (368)
T ss_pred hhhhhhcCcchhhhhhcchhheehhhhhhhhhhcccccCccccccccccccc---cccccCCccccccccHHHhhhhh--
Confidence 7999999999999999999999999999999999998763211000000000 11123477888899999998752
Q ss_pred hhhhhcccchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcCCeeeccccccccCeeeccCCCCCcccccc
Q 021892 236 EEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 304 (306)
Q Consensus 236 ~~~~e~~eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kkw 304 (306)
+.||+ +| ..+.+|||+||++|||||||||||||+|||||+|||||++|++|+|++.||+|||.|+|
T Consensus 303 -~~dEe-~p-s~~dslFqklY~~addDtrRAMmKSf~ESnGTaLSTdW~dVkskt~~t~pPeGMEPK~~ 368 (368)
T COG5091 303 -SGDEE-NP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW 368 (368)
T ss_pred -ccccc-Cc-hHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceecccHHHhhcCceecCCCCCCCCCCC
Confidence 22221 23 34788999999999999999999999999999999999999999999999999999999
No 4
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=100.00 E-value=5.7e-42 Score=261.55 Aligned_cols=81 Identities=58% Similarity=0.998 Sum_probs=31.9
Q ss_pred CCchhHHHHHhhhhhhhcccchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcCCeeeccccccccCeeeccCCCCCccccc
Q 021892 224 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 303 (306)
Q Consensus 224 ~DWdK~~~e~~~~~~~e~~eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kk 303 (306)
+||++|......+.++++.+++++||+|||+||++|||||||||||||+|||||||||||+|||+++|+++||+|||+|+
T Consensus 2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~ 81 (82)
T PF05002_consen 2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK 81 (82)
T ss_dssp ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence 58999986544444455567788999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 021892 304 W 304 (306)
Q Consensus 304 w 304 (306)
|
T Consensus 82 ~ 82 (82)
T PF05002_consen 82 W 82 (82)
T ss_dssp -
T ss_pred C
Confidence 9
No 5
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.92 E-value=4.5e-25 Score=189.22 Aligned_cols=139 Identities=22% Similarity=0.327 Sum_probs=120.5
Q ss_pred CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcc-cccccccCCCceEEEeCCEEEEEEEeCCC
Q 021892 107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLAKAEP 185 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l-~L~~~I~pe~s~~kv~~~KIEI~L~K~~~ 185 (306)
.|.|.|++.+|.++|.+.||+.++|+|+|++.+|.+.++...|++|.+.+ +|+++|.|+.|+.+|.+..|.|.++|.+.
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVEN 155 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhc
Confidence 39999999999999999999999999999999999999988899999999 99999999999999999999999999889
Q ss_pred CCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhCCCCHHHHH
Q 021892 186 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRR 265 (306)
Q Consensus 186 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~~~~~e~~eg~a~l~~~fq~iY~~adddtkR 265 (306)
.+|.-|+......+. ...|+|- .| .|++++||++|++||.|||+||||
T Consensus 156 ~rwd~Lt~~~Ke~Ke----------k~kpsl~---------------------ke-~DP~~glmnvmKk~YeDGD~~mK~ 203 (224)
T KOG3260|consen 156 TRWDYLTQVEKECKE----------KEKPSLD---------------------KE-TDPSEGLMNVMKKIYEDGDDDMKQ 203 (224)
T ss_pred ccchHHHHHHHHHhh----------ccCcccc---------------------cc-CChHHHHHHHHHHHHhcccHHHHH
Confidence 999999865433211 1233331 11 246789999999999999999999
Q ss_pred HHHHhhhhcCCe
Q 021892 266 AMKKSFVESNGT 277 (306)
Q Consensus 266 AM~KSf~ES~GT 277 (306)
+|+|+|+||+..
T Consensus 204 tIaKAWtesr~k 215 (224)
T KOG3260|consen 204 TIAKAWTESREK 215 (224)
T ss_pred HHHHHHHHhhhh
Confidence 999999999753
No 6
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.90 E-value=1.6e-23 Score=163.04 Aligned_cols=87 Identities=36% Similarity=0.566 Sum_probs=82.8
Q ss_pred CCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC
Q 021892 106 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 185 (306)
Q Consensus 106 ~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~ 185 (306)
+||||||++++|+|+||+++++++++.|.|++++|+|++..++++.|.+.++||++|+|+.|++++.++||||+|+|+++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 69999999999999999999999999999999999998877777889999999999999999999999999999999998
Q ss_pred CCCCcee
Q 021892 186 IQWSSLE 192 (306)
Q Consensus 186 ~~W~~L~ 192 (306)
.+|++|+
T Consensus 81 ~~W~~Le 87 (87)
T cd06488 81 GSWAKLE 87 (87)
T ss_pred CcCccCC
Confidence 9999985
No 7
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.87 E-value=8.3e-22 Score=152.06 Aligned_cols=84 Identities=37% Similarity=0.757 Sum_probs=80.3
Q ss_pred eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCCCCC
Q 021892 109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 188 (306)
Q Consensus 109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~~W 188 (306)
||||+.+.|+|+|++++++++++.|+|++++|+|++...++..|.|.++||++|+|++|+|++++++|||+|+|+++.+|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 80 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999987777789999999999999999999999999999999988999
Q ss_pred Ccee
Q 021892 189 SSLE 192 (306)
Q Consensus 189 ~~L~ 192 (306)
++|+
T Consensus 81 ~~Le 84 (84)
T cd06489 81 SKLE 84 (84)
T ss_pred ccCC
Confidence 9995
No 8
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.86 E-value=2.8e-21 Score=155.98 Aligned_cols=102 Identities=20% Similarity=0.348 Sum_probs=89.0
Q ss_pred CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC-
Q 021892 107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP- 185 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~- 185 (306)
.++|||+.+.|+|||+++++ .+++|+|++++|+|++...+|..|.+.|+||++|+|++|+|++++++|+|+|+|++.
T Consensus 3 ~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~ 80 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG 80 (106)
T ss_pred cceeeECCCEEEEEEEeCCC--CCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence 57999999999999999984 899999999999999865466789999999999999999999999999999999875
Q ss_pred CCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 021892 186 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 231 (306)
Q Consensus 186 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~ 231 (306)
.+|++|++... ++.|- ++|||||.+
T Consensus 81 ~~WprL~k~~~----------------k~~~l-----k~DfdkW~D 105 (106)
T cd00237 81 VAWPRLTKEKA----------------KPNWL-----SVDFDNWRD 105 (106)
T ss_pred CCCchhhcCCC----------------CCCcE-----ECcchhccC
Confidence 58999998632 34454 679999974
No 9
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.82 E-value=4.7e-20 Score=148.92 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=80.4
Q ss_pred CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC-CCceEEEcccccccccCCCceEEEeCCEEEEEEEeCC-
Q 021892 107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE- 184 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~-~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~- 184 (306)
.|+||||.+.|+|+|+++++ +++.|.|++++|+|++... ++..|.+.++||++|+|++|+|++.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 58999999999999999998 8899999999999998653 5677999999999999999999999999999999999
Q ss_pred CCCCCceeecc
Q 021892 185 PIQWSSLEFSK 195 (306)
Q Consensus 185 ~~~W~~L~~~~ 195 (306)
+.+|++|+..+
T Consensus 80 ~~~W~~L~~~~ 90 (108)
T cd06465 80 GEYWPRLTKEK 90 (108)
T ss_pred CCCCcccccCC
Confidence 78999998753
No 10
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.81 E-value=2.3e-19 Score=140.45 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=79.9
Q ss_pred CeeeecCCCeEEEEEEecCCCC---CccEEEeeccEEEEEEEcCCCceEEEccc-ccccccCCCceEEEeCCEEEEEEEe
Q 021892 107 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRLAK 182 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~k~v~~---e~v~V~f~~~~l~v~i~~~~~~~y~~~l~-L~~~I~pe~s~~kv~~~KIEI~L~K 182 (306)
+|+|||+.+.|+|+|+++++.. +++.|+|++++|.|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|.|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K 82 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK 82 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence 7999999999999999998865 89999999999999987667788999984 9999999999999999999999999
Q ss_pred CCCCCCCcee
Q 021892 183 AEPIQWSSLE 192 (306)
Q Consensus 183 ~~~~~W~~L~ 192 (306)
+++.+|++|+
T Consensus 83 ~~~~~W~~L~ 92 (92)
T cd06468 83 KKEKKWESLT 92 (92)
T ss_pred CCCCccCccC
Confidence 9889999984
No 11
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.80 E-value=2.1e-19 Score=137.73 Aligned_cols=84 Identities=49% Similarity=0.782 Sum_probs=79.0
Q ss_pred eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCCCCC
Q 021892 109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 188 (306)
Q Consensus 109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~~W 188 (306)
||||+++.|+|+|+++|+.++++.|.|++++|.|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|+++..|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W 80 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999875546689999999999999999999999999999999998999
Q ss_pred Ccee
Q 021892 189 SSLE 192 (306)
Q Consensus 189 ~~L~ 192 (306)
++|+
T Consensus 81 ~~L~ 84 (84)
T cd06466 81 PSLE 84 (84)
T ss_pred ccCC
Confidence 9985
No 12
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.78 E-value=9.1e-19 Score=136.45 Aligned_cols=83 Identities=29% Similarity=0.444 Sum_probs=73.3
Q ss_pred eeeecCCCeEEEEEEecC--CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEe--CCEEEEEEEeC
Q 021892 108 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL--STKVEIRLAKA 183 (306)
Q Consensus 108 ~dWyQt~~~V~ItI~~k~--v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~--~~KIEI~L~K~ 183 (306)
|||||+++.|+|+||+|+ .+..++.+.+..++|+|++..+ +..|.++++|||+|+|+. ++++. ++||||+|+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence 799999999999999985 5667788888998999998876 778999999999998665 88988 55999999999
Q ss_pred CCCCCCcee
Q 021892 184 EPIQWSSLE 192 (306)
Q Consensus 184 ~~~~W~~L~ 192 (306)
++..|++|+
T Consensus 79 e~~~W~~Lg 87 (87)
T cd06490 79 EPEKWTSLG 87 (87)
T ss_pred CCCccccCc
Confidence 999999984
No 13
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.69 E-value=1.7e-16 Score=119.21 Aligned_cols=77 Identities=38% Similarity=0.581 Sum_probs=69.8
Q ss_pred CCeeeecCCCeEEEEEEecCCC--CCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEe
Q 021892 106 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 182 (306)
Q Consensus 106 ~r~dWyQt~~~V~ItI~~k~v~--~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K 182 (306)
+||+|+|+.+.|+|+|++++.. ++++.|+|++++|.|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 4899999999999999997764 8999999999999999886666899999999999999999999999999999997
No 14
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.68 E-value=1.7e-16 Score=120.15 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=73.0
Q ss_pred eecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCCCCCC
Q 021892 110 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS 189 (306)
Q Consensus 110 WyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~~W~ 189 (306)
|+|+++.|+|+|+++|+.++++.|+++++.|.|++ ..|.+.++||++|+|+.|++++.+++|+|+|.|+++.+|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~ 75 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE 75 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence 99999999999999999999999999998877754 4699999999999999999999999999999999889999
Q ss_pred cee
Q 021892 190 SLE 192 (306)
Q Consensus 190 ~L~ 192 (306)
+|+
T Consensus 76 ~L~ 78 (78)
T cd06469 76 ALC 78 (78)
T ss_pred ccC
Confidence 985
No 15
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.67 E-value=3.4e-16 Score=118.44 Aligned_cols=83 Identities=37% Similarity=0.636 Sum_probs=77.8
Q ss_pred eecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC-CCC
Q 021892 110 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW 188 (306)
Q Consensus 110 WyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~-~~W 188 (306)
|+|+++.|+|+|+++++.++++.|+|++++|+|++...++..|.+.+.||++|+|+.|++++.+++|+|+|.|+.+ .+|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W 80 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW 80 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999875546789999999999999999999999999999999988 899
Q ss_pred Ccee
Q 021892 189 SSLE 192 (306)
Q Consensus 189 ~~L~ 192 (306)
++|+
T Consensus 81 ~~l~ 84 (84)
T cd06463 81 PRLE 84 (84)
T ss_pred cccC
Confidence 9984
No 16
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.64 E-value=1e-15 Score=118.55 Aligned_cols=82 Identities=16% Similarity=0.329 Sum_probs=71.8
Q ss_pred eeeecCCCeEEEEEEe-cCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEEEeCCC
Q 021892 108 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP 185 (306)
Q Consensus 108 ~dWyQt~~~V~ItI~~-k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~K~~~ 185 (306)
|+|+||.+.|+|+|++ +++.++++.|.|++++|.|.+. ++ ...+.++||+.|+|++|+|++... +|+|+|.|+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~-~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQ-APLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CC-CeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 7999999999999999 5899999999999999999874 33 345788999999999999999655 79999999986
Q ss_pred -CCCCcee
Q 021892 186 -IQWSSLE 192 (306)
Q Consensus 186 -~~W~~L~ 192 (306)
.+|++|.
T Consensus 78 ~~~W~~L~ 85 (85)
T cd06493 78 GPTWPELV 85 (85)
T ss_pred CccccccC
Confidence 5999983
No 17
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.64 E-value=1.4e-15 Score=117.01 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=73.8
Q ss_pred eeeecCCCeEEEEEEec-CCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeC-CEEEEEEEeCCC
Q 021892 108 HEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP 185 (306)
Q Consensus 108 ~dWyQt~~~V~ItI~~k-~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~-~KIEI~L~K~~~ 185 (306)
|.|+|+.+.|+|+|.++ ++.++++.|+|++++|+|++.. ..+.+...||++|+|++|+|++.+ ++|+|+|+|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 78999999999999884 6788999999999999998752 357888899999999999999999 999999999987
Q ss_pred -CCCCce
Q 021892 186 -IQWSSL 191 (306)
Q Consensus 186 -~~W~~L 191 (306)
.+|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06467 78 GEWWPSL 84 (85)
T ss_pred Ccccccc
Confidence 799987
No 18
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-16 Score=134.20 Aligned_cols=104 Identities=25% Similarity=0.331 Sum_probs=89.4
Q ss_pred CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEc-CCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC
Q 021892 107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 185 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~-~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~ 185 (306)
-+.|+|+.+.|+|+|.+.+ ..++.|.+++..|+|+... .++..|.+.|.||++|+|++|++++.++.|.++|+|++.
T Consensus 9 ~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 9 EVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKEL 86 (180)
T ss_pred cchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEcccc
Confidence 3689999999999999974 4788999999999999875 456667788999999999999999999999999999887
Q ss_pred -CCCCceeeccCcccCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 021892 186 -IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQV 233 (306)
Q Consensus 186 -~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~ 233 (306)
.+||||++.. .++.|. ++|||||.+|.
T Consensus 87 ~~~WprLtkeK----------------~K~hwL-----kvDFdkW~Ded 114 (180)
T KOG3158|consen 87 GEYWPRLTKEK----------------AKLHWL-----KVDFDKWVDED 114 (180)
T ss_pred ccccchhhhcc----------------cccceE-----Ecchhhccccc
Confidence 8999999863 346675 56999999764
No 19
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.53 E-value=2.2e-14 Score=129.43 Aligned_cols=92 Identities=33% Similarity=0.485 Sum_probs=85.5
Q ss_pred CCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEc-CCCceEEEcccccccccCCCceEEEeCCEEEEEEEe
Q 021892 104 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 182 (306)
Q Consensus 104 ~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~-~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K 182 (306)
.++||||.||+..|+|+||.++..++...|+.+...|+|++.. .++..|.++++|++.|++++|++.+..+||||+|+|
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k 292 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK 292 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence 5789999999999999999999888899999999999999876 466789999999999999999999999999999999
Q ss_pred CCCCCCCceeecc
Q 021892 183 AEPIQWSSLEFSK 195 (306)
Q Consensus 183 ~~~~~W~~L~~~~ 195 (306)
++++.|.+|+...
T Consensus 293 ~ep~sWa~Le~p~ 305 (320)
T KOG1667|consen 293 AEPGSWARLEFPP 305 (320)
T ss_pred cCCCCcccccCCH
Confidence 9999999998753
No 20
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.49 E-value=1.5e-13 Score=108.39 Aligned_cols=81 Identities=26% Similarity=0.503 Sum_probs=71.9
Q ss_pred CeeeecCCCeEEEEEEe-cCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCE-EEEEEEeCC
Q 021892 107 RHEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE 184 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~-k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~K-IEI~L~K~~ 184 (306)
+|.|+||.+.|+|+|.+ +++...++.|.|++++|.|.+. |.. .+...||+.|+|++|+|.+.+++ |+|.|.|.+
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence 79999999999999954 6899999999999999999874 334 67789999999999999999999 699999986
Q ss_pred CC---CCCce
Q 021892 185 PI---QWSSL 191 (306)
Q Consensus 185 ~~---~W~~L 191 (306)
.. .|++|
T Consensus 83 ~~~~~~W~sl 92 (93)
T cd06494 83 RDAGNCWKSL 92 (93)
T ss_pred CCCCcccccc
Confidence 54 89987
No 21
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.33 E-value=9.5e-12 Score=96.96 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=71.6
Q ss_pred eeeecCCCeEEEEEEec-C--CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEEEeC
Q 021892 108 HEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 183 (306)
Q Consensus 108 ~dWyQt~~~V~ItI~~k-~--v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~K~ 183 (306)
|.|.||.+.|.|+|.++ + +...++.|+|+.++|.|.+. |..+.++.+||++|++++|+|.+.++ .|+|+|.|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence 78999999999999884 2 67899999999999999874 33578899999999999999999874 799999999
Q ss_pred CC-CCCCcee
Q 021892 184 EP-IQWSSLE 192 (306)
Q Consensus 184 ~~-~~W~~L~ 192 (306)
.+ .+|++|.
T Consensus 78 ~~~~wW~~l~ 87 (87)
T cd06492 78 NKMEWWSRLV 87 (87)
T ss_pred CCCccccccC
Confidence 76 7999873
No 22
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.32 E-value=1.4e-11 Score=98.81 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=75.6
Q ss_pred CeeeecCCCeEEEEEEec-CC-CCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCC-EEEEEEEeC
Q 021892 107 RHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 183 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~k-~v-~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~K~ 183 (306)
+|.|.||.+.|.|+|.++ ++ ...++.|+|+.++|.|.+...++..-.++.+||+.|+++.|+|.+.++ .|+|+|.|.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence 699999999999999986 43 578999999999999998643333345888999999999999999885 589999998
Q ss_pred CCCCCCceeecc
Q 021892 184 EPIQWSSLEFSK 195 (306)
Q Consensus 184 ~~~~W~~L~~~~ 195 (306)
...+|++|...+
T Consensus 86 ~~~wW~~v~~g~ 97 (102)
T cd06495 86 SEVWWNAVLKGE 97 (102)
T ss_pred CCcccchhhCCC
Confidence 778999997643
No 23
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.13 E-value=1.9e-10 Score=84.70 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=67.6
Q ss_pred eecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC-------CCceEEEcccccccccCCCceEEEeCCEEEEEEEe
Q 021892 110 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 182 (306)
Q Consensus 110 WyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~-------~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K 182 (306)
|+|+++.|+|+|+++++.++++.|.+.++.|.|++... +...|.+.+.|+++|+|+.+++.+.++.|+|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 99999999999999999999999999999999998653 24689999999999999999999999999999986
No 24
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=98.89 E-value=1e-08 Score=88.58 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCeeeecCCCeEEEEEEe-cCC-CCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeC
Q 021892 106 YRHEFYQKPEEVVVTVFA-KGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 183 (306)
Q Consensus 106 ~r~dWyQt~~~V~ItI~~-k~v-~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~ 183 (306)
-.|.|+||-..|.|.|.+ +|+ ...+|.|.+..++|.|.+. |.+-.+..+|+++|.+++|.|.|..+++.+++-|+
T Consensus 19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K 95 (179)
T KOG2265|consen 19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKK 95 (179)
T ss_pred cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeec
Confidence 369999999999999866 566 7789999999999888865 44578889999999999999999999766666555
Q ss_pred CC--CCCCceeeccC
Q 021892 184 EP--IQWSSLEFSKG 196 (306)
Q Consensus 184 ~~--~~W~~L~~~~~ 196 (306)
.. .+|.+|...+.
T Consensus 96 ~~~~eWW~~ll~gep 110 (179)
T KOG2265|consen 96 SNKMEWWDSLLEGEP 110 (179)
T ss_pred cchHHHHHHHHcCCC
Confidence 44 79999987653
No 25
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.50 E-value=2.3e-08 Score=98.36 Aligned_cols=254 Identities=17% Similarity=0.059 Sum_probs=145.2
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhhhccccCCCCCCCCCcccccCCCCCCCCC
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNI 80 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 80 (306)
..|||||||.||.+|++|.+|+.+|+.+..+.|+|+.+.+-++.|+..+..+.-+..+....+.... +....
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s---~~~~~----- 142 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKS---VVEMK----- 142 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCcc---ccccc-----
Confidence 3689999999999999999999999999999999999999999999999886322111111100000 00000
Q ss_pred CCcccccccccccccccccCCCCCCCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccc
Q 021892 81 SSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFG 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~ 160 (306)
... . +..+ .+ ....-+.++.. .++.+.++.-+ .+ + . ..+.+.-.+++
T Consensus 143 ~~~----~--~~~~-i~-~~y~g~~le~~---------------kvt~e~vk~~~-----~~-~--~--~~~~L~~k~a~ 189 (476)
T KOG0376|consen 143 IDE----E--DMDL-IE-SDYSGPVLEDH---------------KVTLEFVKTLM-----EV-F--K--NQKKLPKKYAY 189 (476)
T ss_pred ccc----c--cccc-cc-cccCCcccccc---------------hhhHHHHHHHH-----Hh-h--h--cccccccccce
Confidence 000 0 0000 00 00111111111 11122221111 00 0 0 12333445556
Q ss_pred cccCCCceE-EEeCCEEEEEEEeCCC-CCCCceeeccCcc-cCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhh
Q 021892 161 KIIPAKCRY-EVLSTKVEIRLAKAEP-IQWSSLEFSKGAV-VPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEE 237 (306)
Q Consensus 161 ~I~pe~s~~-kv~~~KIEI~L~K~~~-~~W~~L~~~~~~~-~~~~~~~~~~~~~~~~~yPss~~~~~DWdK~~~e~~~~~ 237 (306)
.|++..+++ .+.+..|+|. ... .+|.-....-++. ....+-....-++....|- ...||..+.....+-.
T Consensus 190 ~i~~~~~~~~~~l~~~ve~~---~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~yl----fngdfv~rgs~s~e~~ 262 (476)
T KOG0376|consen 190 SILDLAKTILRKLPSLVEIS---VPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYL----FNGDFVDRGSWSVEVI 262 (476)
T ss_pred eeHHHHhhHHhcCCcceEee---cCCCceEEecCCccccccchhhhHhhcCCCCCccccc----ccCceeeecccceeee
Confidence 666665544 4566777777 333 4454443332211 0000000000001112221 2336665554322223
Q ss_pred hhhcccchHHHHHHHHHHhCCCCHHHHHHHHHhhhhcCCeeeccccccccCeeeccCCCCCccccccC
Q 021892 238 KEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE 305 (306)
Q Consensus 238 ~~e~~eg~a~l~~~fq~iY~~adddtkRAM~KSf~ES~GTvLsTnW~ev~~~~ve~~pP~g~e~kkw~ 305 (306)
......+....|+||-..+.-.+++|.+.|-..+-...+++..++|..+ .+..-+|.|+....|.
T Consensus 263 ~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~---~~f~~LPl~~~i~~~~ 327 (476)
T KOG0376|consen 263 LTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS---EVFIWLPLAHLINNKV 327 (476)
T ss_pred eeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhh---hhhccccchhhhcCce
Confidence 3345567778999999999999999999999999999999999999998 7788899999887763
No 26
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.17 E-value=1e-06 Score=55.67 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=31.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
|++||++|.+|+.+++|+.|+.+|++|.+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 6799999999999999999999999999999974
No 27
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3.4e-06 Score=81.78 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=50.4
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
|.||+||||.||..+++|+.|+.+|+++++++|.++.+...|.+|..++.+.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999886
No 28
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.97 E-value=5.6e-06 Score=51.84 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=31.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
|+++|++|.+|+.+++|+.|+.+|++|.+++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 6799999999999999999999999999999975
No 29
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.84 E-value=0.0001 Score=57.55 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=63.9
Q ss_pred CeeeecCCCeEEEEEEecCCCCCccEEEeecc-EEEEEEEcC-----C----------CceEEEcccccccccCCCceEE
Q 021892 107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----G----------EEAYHFQPRLFGKIIPAKCRYE 170 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~-~l~v~i~~~-----~----------~~~y~~~l~L~~~I~pe~s~~k 170 (306)
|++|+.+++.+.|.+.++|+.++++.|.+..+ .|+|+.... . ...|.-.+.|-..|+++..+..
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 57999999999999999999999999999864 788887421 1 1256667899999999988888
Q ss_pred EeCCEEEEEEEe
Q 021892 171 VLSTKVEIRLAK 182 (306)
Q Consensus 171 v~~~KIEI~L~K 182 (306)
....-++|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 899999999875
No 30
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00014 Score=61.79 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=71.2
Q ss_pred CCCeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC---------------CceEEEcccccccccCCCceE
Q 021892 105 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRY 169 (306)
Q Consensus 105 k~r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~---------------~~~y~~~l~L~~~I~pe~s~~ 169 (306)
.+.|+.+++++.+.|++-++|+.+++|.|.+.++.|+|+....+ ...|.-.+.|...|+|+..+-
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A 119 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKA 119 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceee
Confidence 45699999999999999999999999999999999999986543 135777889999999998888
Q ss_pred EEeCCEEEEEEEeCCC
Q 021892 170 EVLSTKVEIRLAKAEP 185 (306)
Q Consensus 170 kv~~~KIEI~L~K~~~ 185 (306)
+...+-+.|.|.|..+
T Consensus 120 ~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 120 KYKNGLLTVTLPKAEP 135 (146)
T ss_pred EeeCcEEEEEEecccc
Confidence 9999999999999754
No 31
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.49 E-value=0.0006 Score=53.10 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=60.7
Q ss_pred CeeeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC--------C---------ceEEEcccccccccCCCceE
Q 021892 107 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRY 169 (306)
Q Consensus 107 r~dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~--------~---------~~y~~~l~L~~~I~pe~s~~ 169 (306)
+.+++++++.+.|.+.++|+.++++.|.+.++.|.|+..... + ..|.-.+.|- .|+++..+.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 689999999999999999999999999999999999764321 0 1244445664 788888888
Q ss_pred EEeCCEEEEEEEe
Q 021892 170 EVLSTKVEIRLAK 182 (306)
Q Consensus 170 kv~~~KIEI~L~K 182 (306)
++...-+.|+|.|
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 8999999999865
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.00012 Score=53.08 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=45.7
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 50 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~ 50 (306)
+|.+|+++|.+++.+++|+.|+.+|++|.+++|++..+-..+..|...+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999988888888877665
No 33
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.46 E-value=0.00065 Score=51.35 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=63.9
Q ss_pred eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC--------------CceEEEcccccccccCCCceEEEeCC
Q 021892 109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST 174 (306)
Q Consensus 109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~--------------~~~y~~~l~L~~~I~pe~s~~kv~~~ 174 (306)
+++++++.+.|.|.++|+.++++.|.+.++.|.|+..... ...|.-.+.|-..|+++..+..+..+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 4688899999999999999999999999999999864321 34688889999999999999999999
Q ss_pred EEEEEEEe
Q 021892 175 KVEIRLAK 182 (306)
Q Consensus 175 KIEI~L~K 182 (306)
-++|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99998865
No 34
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.45 E-value=0.0012 Score=52.07 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=61.3
Q ss_pred eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC----CC---------ceEEEcccccccccCCCceEEEeCCE
Q 021892 109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK 175 (306)
Q Consensus 109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~----~~---------~~y~~~l~L~~~I~pe~s~~kv~~~K 175 (306)
||+++++.+.|.+.++|+.++++.|.+.++.|.|+.... ++ ..|.-.+.|-..|+++..+.++..+-
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 789999999999999999999999999999999887432 21 24666788999999999899999999
Q ss_pred EEEEEEeCCC
Q 021892 176 VEIRLAKAEP 185 (306)
Q Consensus 176 IEI~L~K~~~ 185 (306)
+.|++.|...
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 9999999653
No 35
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.00014 Score=68.31 Aligned_cols=51 Identities=33% Similarity=0.473 Sum_probs=46.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
+|||-|.|+||+.+++|++|..+|++|.+++|.....+.=+..++.+|.+.
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999999999999998888788887777664
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0002 Score=71.63 Aligned_cols=48 Identities=29% Similarity=0.442 Sum_probs=46.1
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 49 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l 49 (306)
.++|+|+|.|++.+++|+.|+.+|+.|.+++|+...+..|+.+|-..+
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999998776
No 37
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.20 E-value=0.00021 Score=44.69 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=30.0
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAP 33 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~ 33 (306)
|++||.+|.+|..+++|+.|..+|++|.+++|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999999988
No 38
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.12 E-value=0.00044 Score=40.41 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=30.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
+.+|+++|.+|+.+++|+.|..+|+.+.++.|.
T Consensus 1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 368999999999999999999999999998875
No 39
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=97.09 E-value=0.0012 Score=65.02 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=72.4
Q ss_pred CCeeeecCCCeEEEEEEecC-CCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeC-CEEEEEEEeC
Q 021892 106 YRHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKA 183 (306)
Q Consensus 106 ~r~dWyQt~~~V~ItI~~k~-v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~-~KIEI~L~K~ 183 (306)
..|.|.|+.+.|.|++.++. +...++.|.+..+.|.+.+. ..-.|...||+.|..+.|.|.|.. .++|+.|.|+
T Consensus 290 p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~ 365 (596)
T KOG4379|consen 290 PSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKA 365 (596)
T ss_pred ccceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeec
Confidence 46999999999999999864 45688999999888776653 245677899999999999999865 8999999999
Q ss_pred CC-CCCCceeeccC
Q 021892 184 EP-IQWSSLEFSKG 196 (306)
Q Consensus 184 ~~-~~W~~L~~~~~ 196 (306)
+. ..|++|...+.
T Consensus 366 de~~twprL~~~dk 379 (596)
T KOG4379|consen 366 DEIQTWPRLFAQDK 379 (596)
T ss_pred ccccccchheeecc
Confidence 54 78999986644
No 40
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.68 E-value=0.0038 Score=44.12 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=43.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
.++|=.++++|.+++|..|+.+.+.+.+++|++.....-...++.++.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence 36788899999999999999999999999999999988888888888764
No 41
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.60 E-value=0.001 Score=48.03 Aligned_cols=32 Identities=41% Similarity=0.607 Sum_probs=30.2
Q ss_pred hhhhhhhhhhhhccc-cHHHHHHHHHHhhccCC
Q 021892 2 SKAYWRKATACMKLE-EYETAKVALEKGASLAP 33 (306)
Q Consensus 2 aka~~R~Gia~~~l~-~y~~A~~~l~~a~~~~~ 33 (306)
+.+|+++|.+|+.++ +|+.|+.+|++|.+++|
T Consensus 37 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 37 AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 568999999999999 89999999999999987
No 42
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.49 E-value=0.016 Score=44.90 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=59.9
Q ss_pred eeecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC----C----ceEEEcccccccccCCCceEEEe-CCEEEEE
Q 021892 109 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR 179 (306)
Q Consensus 109 dWyQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~----~----~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~ 179 (306)
+++.+++.+.|.+.++|+.++++.|.+.++.|.|+..... + ..|.-.+.|-..|++++.+-... ..-+.|.
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~ 83 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE 83 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence 7899999999999999999999999999999999875421 1 23666788999999998888886 7777776
Q ss_pred E
Q 021892 180 L 180 (306)
Q Consensus 180 L 180 (306)
|
T Consensus 84 l 84 (86)
T cd06475 84 A 84 (86)
T ss_pred e
Confidence 6
No 43
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.47 E-value=0.013 Score=44.77 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCC--------ceEEEcccccccccCCCceEEEeC-CEEEEEEEe
Q 021892 115 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK 182 (306)
Q Consensus 115 ~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~--------~~y~~~l~L~~~I~pe~s~~kv~~-~KIEI~L~K 182 (306)
+.+.|.+.++|+.+++|.|.+.++.|.|+...... ..|.-.+.|-..|+++..+.++.. .-+.|.+.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 47889999999999999999999999998753211 257778899999999988888887 888888865
No 44
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=96.46 E-value=0.015 Score=44.58 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=59.6
Q ss_pred ecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC--CC---ceEEEcccccccccCCCceEEE-eCCEEEEEEEe
Q 021892 111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--GE---EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK 182 (306)
Q Consensus 111 yQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~--~~---~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~L~K 182 (306)
+.+++.+.|.+.++|+.++++.|.+.++.|+|+.... .+ ..|.-.+.|-..|+++..+-.+ ....+.|+|.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 4577889999999999999999999999999987431 22 2577788999999999988887 77888888863
No 45
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0028 Score=63.61 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=43.0
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 46 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~ 46 (306)
+|+|+|+|.|++.|++|++|..+|..|.+++|+.+.|..=+..+.
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 689999999999999999999999999999999999998888887
No 46
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.41 E-value=0.0018 Score=46.27 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=30.7
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021892 6 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 49 (306)
Q Consensus 6 ~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l 49 (306)
|.+|.+++..++|+.|...|+.+.+..|.+.....++..|....
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 45677777777777777777777777777776666666665543
No 47
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.39 E-value=0.017 Score=44.72 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=59.2
Q ss_pred ecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC----CC----ceEEEcccccccccCCCceEEE-eCCEEEEEEE
Q 021892 111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA 181 (306)
Q Consensus 111 yQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~----~~----~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~L~ 181 (306)
+.+++.+.|.+.++|+.++++.|.+.++.|+|+.... ++ ..|.-.+.|-..|+++..+-.+ ...-+.|+|.
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 5678889999999999999999999999999987531 11 1355578899999999998888 5788999886
Q ss_pred e
Q 021892 182 K 182 (306)
Q Consensus 182 K 182 (306)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 5
No 48
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0044 Score=59.58 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=48.1
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
++||||+|.++..+++|++|+..++.|+.+.|.|..|...+.....++...
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 689999999999999999999999999999999999999999988887775
No 49
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.22 E-value=0.0081 Score=48.68 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 50 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~ 50 (306)
..||.+|.+|+.+++|+.|...|+.+.+++|++..+..+..+|...++
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 456677777777777777777777777777777777777776666554
No 50
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.22 E-value=0.0047 Score=44.93 Aligned_cols=43 Identities=26% Similarity=0.382 Sum_probs=36.7
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 44 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k 44 (306)
+.+++.+|.+|+.+|+|..|..+|+.+.++.|++........+
T Consensus 29 ~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 29 PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4578889999999999999999999999999988877666554
No 51
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.15 E-value=0.028 Score=43.34 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=58.2
Q ss_pred CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CCc-----eEEEcccccccccCCCceEEEe-CCEEEEEEEeC
Q 021892 113 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAKA 183 (306)
Q Consensus 113 t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~~-----~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~L~K~ 183 (306)
+++.+.|.+.++|+.++++.|.+.++.|+|+.... .+. .|.-.+.|-..|+++..+-+.. .+-+.|+|.|+
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 56788999999999999999999999999987532 111 2556678999999999999995 88999998764
No 52
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.12 E-value=0.0064 Score=40.62 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=34.4
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 40 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~ 40 (306)
.+++..|.+|..+|+++.|...|+++.+.+|+|...-.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 57899999999999999999999999999999876443
No 53
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.05 E-value=0.0045 Score=37.94 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=29.0
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
.|+|+.|.+++.+++++.|...|++....-|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 48999999999999999999999998877664
No 54
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=95.90 E-value=0.037 Score=42.46 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=56.8
Q ss_pred cCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CC-----ceEEEcccccccccCCCceEEEe-CCEEEEEEEe
Q 021892 112 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 182 (306)
Q Consensus 112 Qt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~-----~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~L~K 182 (306)
.+++.+.|.+.++|+.++++.|.+.++.|.|+.... .+ ..|.-.+.|-..|+++..+-.+. .+-+.|.|-|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 356789999999999999999999999999987432 11 23566778989999998888884 7788888765
No 55
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=95.90 E-value=0.076 Score=41.20 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=55.9
Q ss_pred eeeecCC-CeEEEEEEecCCCCCccEEEeeccEEEEEEEcC--C------------CceEEEcccccccccCCCceEEEe
Q 021892 108 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--G------------EEAYHFQPRLFGKIIPAKCRYEVL 172 (306)
Q Consensus 108 ~dWyQt~-~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~--~------------~~~y~~~l~L~~~I~pe~s~~kv~ 172 (306)
++=++++ +.+.|.+.++|+.++++.|.+..+.|.|+.... . -..|.-.+.|-..|+.. +....
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~ 80 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE 80 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence 4556764 899999999999999999999999999986421 1 12466677888888875 56778
Q ss_pred CCEEEEEEE
Q 021892 173 STKVEIRLA 181 (306)
Q Consensus 173 ~~KIEI~L~ 181 (306)
..-+.|+|.
T Consensus 81 ~GvL~I~l~ 89 (90)
T cd06470 81 NGLLTIDLE 89 (90)
T ss_pred CCEEEEEEE
Confidence 888888875
No 56
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.64 E-value=0.022 Score=47.82 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=18.0
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
.++|++|++++.+|++++|..+|+++..++|++...
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 344555555555555555555555555555544433
No 57
>PRK10743 heat shock protein IbpA; Provisional
Probab=95.63 E-value=0.11 Score=43.90 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=61.6
Q ss_pred CCeeeec-CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CCc----------eEEEcccccccccCCCceEEE
Q 021892 106 YRHEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEV 171 (306)
Q Consensus 106 ~r~dWyQ-t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~~----------~y~~~l~L~~~I~pe~s~~kv 171 (306)
+.++-++ +++.+.|.+.++|+.+++|.|.+.++.|+|+.... .+. .|.-.+.|-..|++++ -..
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~ 112 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANL 112 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEE
Confidence 3578884 89999999999999999999999999999987431 111 3455678989999984 677
Q ss_pred eCCEEEEEEEeC
Q 021892 172 LSTKVEIRLAKA 183 (306)
Q Consensus 172 ~~~KIEI~L~K~ 183 (306)
..+-+.|+|.|.
T Consensus 113 ~dGVL~I~lPK~ 124 (137)
T PRK10743 113 VNGLLYIDLERV 124 (137)
T ss_pred eCCEEEEEEeCC
Confidence 888999999985
No 58
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.26 E-value=0.021 Score=40.62 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=31.1
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
+.++|++|.+|+.+++|++|...|+++.+++|+++
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999999999999864
No 59
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.02 E-value=0.022 Score=40.70 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=28.5
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 42 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi 42 (306)
..+++..|.+|+.+|+|+.|...|++....+|+++.+..-+
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 45677777778888888888888877777777765554433
No 60
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=94.92 E-value=0.16 Score=39.06 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=55.6
Q ss_pred CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CC-----ceEEEcccccccccCCCceEEEe-CCEEEEEEEe
Q 021892 113 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 182 (306)
Q Consensus 113 t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~-----~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~L~K 182 (306)
.++...|.+.++|+.++++.|++.++.|.|+.... .+ ..|.-.+.|-..|+++..+-+.. .+-+.|.|-|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 35678899999999999999999999999987531 11 13555678999999999888886 7888888754
No 61
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=94.71 E-value=0.14 Score=39.66 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=52.0
Q ss_pred CCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC----C--C------ceEEEcccccccccCCCceEEE-eCCEEEEEE
Q 021892 114 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----G--E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRL 180 (306)
Q Consensus 114 ~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~----~--~------~~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~L 180 (306)
.+.+.|.+.++|+.+++|.|.+..+.|.|+.... + + ..|.-.+.|-..|+++..+-.+ ...-+.|.+
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 4678899999999999999999999999987421 1 1 2355567898999999888788 556666654
No 62
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=94.66 E-value=0.28 Score=41.68 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=60.0
Q ss_pred Ceeeec-CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CCc----------eEEEcccccccccCCCceEEEe
Q 021892 107 RHEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEVL 172 (306)
Q Consensus 107 r~dWyQ-t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~~----------~y~~~l~L~~~I~pe~s~~kv~ 172 (306)
.++=++ +++.+.|++.++|+.+++|.|.+.++.|+|+.... .+. .|.-.+.|-..|+++ +-+..
T Consensus 34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~ 111 (142)
T PRK11597 34 PYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFV 111 (142)
T ss_pred cEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEc
Confidence 467787 46789999999999999999999999999987521 111 355567788889987 46788
Q ss_pred CCEEEEEEEeC
Q 021892 173 STKVEIRLAKA 183 (306)
Q Consensus 173 ~~KIEI~L~K~ 183 (306)
.+-+.|+|-|.
T Consensus 112 nGVL~I~lPK~ 122 (142)
T PRK11597 112 NGLLHIDLIRN 122 (142)
T ss_pred CCEEEEEEecc
Confidence 88999999985
No 63
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.21 E-value=0.03 Score=35.80 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=24.3
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
||...|.+|..+++|+.|..+|+++..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999996644
No 64
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=93.92 E-value=0.29 Score=46.30 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=54.1
Q ss_pred CCeEEEEEEecCC-CCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEe--CCEEEEEEE
Q 021892 114 PEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL--STKVEIRLA 181 (306)
Q Consensus 114 ~~~V~ItI~~k~v-~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~--~~KIEI~L~ 181 (306)
...+.|+|.++++ ...++.+++.++.|.|.+... .|.|.|.|-.+|+++.++-+.. ...+.|+|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 6789999999998 668999999999999887522 7999999999999999866654 457888773
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.50 E-value=0.11 Score=43.51 Aligned_cols=47 Identities=21% Similarity=0.107 Sum_probs=34.7
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 48 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~ 48 (306)
+.+|+.+|.+|..+++|++|...|+++..++|++...-.-+..|-..
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45778888888888888888888888888888876655544444333
No 66
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.1 Score=48.43 Aligned_cols=52 Identities=33% Similarity=0.387 Sum_probs=47.3
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHhh
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFTNLIKECEERIAEE 52 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~-d~~~~~wi~k~~~~l~~~ 52 (306)
|.|||||||-|...-=+-.+|..+|+++.+++|. -+.+.+.+.-++..+++.
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999997 567889999998888876
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.29 E-value=0.12 Score=41.68 Aligned_cols=43 Identities=35% Similarity=0.463 Sum_probs=21.6
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
.+++++|.+|+.+++|..|...|+.+..++|.+..+-..+..|
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3445555555555555555555555555555544444444443
No 68
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.20 E-value=0.033 Score=41.97 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=38.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
..+|++|.+||.+++|+.|...|++ .++++....+...+.+|-.+|.+
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 5688899999999999999999999 77888776666677777665554
No 69
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=93.00 E-value=0.46 Score=36.94 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC------CCce-----EEEcccccccccCCCceEEEeCC-EEEE
Q 021892 114 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------GEEA-----YHFQPRLFGKIIPAKCRYEVLST-KVEI 178 (306)
Q Consensus 114 ~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~------~~~~-----y~~~l~L~~~I~pe~s~~kv~~~-KIEI 178 (306)
++.++|++.++|+.+++|.|.+..+.|+|+.... +... |.-.+.|-..|+++..+-+.... .|.|
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 5678999999999999999999999999997531 1112 34467888889999887777666 5554
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.79 E-value=0.16 Score=45.15 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=39.6
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
++.+++++|.+|..+++|+.|..+|++|..++|++..+-.-+..|
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999988776665554
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=92.79 E-value=0.15 Score=47.94 Aligned_cols=41 Identities=22% Similarity=0.107 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 42 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi 42 (306)
+.+|+.+|++++.+++|++|+.+|+++.+++|+|+....|.
T Consensus 132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 172 (296)
T PRK11189 132 NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL 172 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34566666666666666666666666666666665434443
No 72
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.76 E-value=0.26 Score=34.73 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=33.0
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 48 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~ 48 (306)
+++.+|.+++..++|+.|...|+.+.++.|.+..+-.++..|-..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK 46 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 678888888888888888888888888888776544444444333
No 73
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.73 E-value=0.19 Score=50.27 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=33.5
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
+.+|+-+|++||++++|++|+.+|++|.+++|++..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae 110 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE 110 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence 578999999999999999999999999999999863
No 74
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.58 E-value=0.079 Score=38.99 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=27.7
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
+.+++..|.+|+.+++|+.|+.+|++|.++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999864
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.16 Score=50.06 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=44.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
-|||+|+|.|+..|++|++|..+|++|.++.-+ ..+.+-+.+++..|+..
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999876 77888888888888864
No 76
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.24 E-value=0.11 Score=34.17 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=28.0
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
|.+|.|.|-+....++|..|..+|++|.++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 578999999999999999999999999865
No 77
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.10 E-value=0.11 Score=38.26 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=27.1
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
+.+|+.+|.+|+.+++|+.|+.+|++|..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999976
No 78
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=92.05 E-value=1.1 Score=34.37 Aligned_cols=67 Identities=7% Similarity=-0.017 Sum_probs=49.5
Q ss_pred CCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcC---CCc-----eEEEcccccccccCCCceEEE-eCCEEEEE
Q 021892 113 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 179 (306)
Q Consensus 113 t~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~---~~~-----~y~~~l~L~~~I~pe~s~~kv-~~~KIEI~ 179 (306)
+++...|.+.++|+.++++.|.+..+.|+|+.... ... .|.=.+.|-..|+++..+-+. ...-+.|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 46678899999999999999999999999997531 111 244456788889888777666 34555443
No 79
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.05 E-value=0.22 Score=48.25 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=39.6
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 49 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l 49 (306)
+.+|+.+|.+|+.+++|++|+.+|++|..++|.+...-..+..+-..+
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999998877655555444433
No 80
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.05 E-value=0.17 Score=45.85 Aligned_cols=50 Identities=30% Similarity=0.299 Sum_probs=44.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
+|+.||+-+|-++.+|+.|+.+|++-++++|.-.....-|.++..+|...
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er 218 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER 218 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence 78999999999999999999999999999998777777777777777665
No 81
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=0.16 Score=51.16 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=39.1
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 49 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l 49 (306)
|+..||-||..+|-|++|+.|..+|++|.+|+|.. +--.|++|=...
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCCALY 439 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHH
Confidence 56789999999999999999999999999999964 555666664433
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.31 E-value=0.44 Score=33.43 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=35.4
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
.+++.+|.+|+.+++|+.|...|+.+..+.|.+..+-..+..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 4788999999999999999999999999999887444333333
No 83
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.15 E-value=0.33 Score=41.95 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=43.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
+..||-.|.+|-.+++|+.|..+|.+|..++|+|+....-...|--.+.+.
T Consensus 69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 456788899999999999999999999999999999888888887766554
No 84
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.95 E-value=0.097 Score=33.19 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.4
Q ss_pred ChhhhhhhhhhhhccccHHHHH
Q 021892 1 MSKAYWRKATACMKLEEYETAK 22 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~ 22 (306)
++.||+.+|.+|+.+|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5789999999999999999996
No 85
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=89.98 E-value=0.2 Score=37.64 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=22.0
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKG 28 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a 28 (306)
.++|-.|.||+.|++|++|+..|+++
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 45677799999999999999999875
No 86
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.97 E-value=0.26 Score=31.33 Aligned_cols=30 Identities=27% Similarity=0.208 Sum_probs=25.7
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
+.++...|++|+.+++|++|+..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467888999999999999999999998754
No 87
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=89.71 E-value=0.31 Score=37.74 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=23.9
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
.++|.+|.+++..++|+.|...|+.+..+.|+.
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 467777777777777777777777777776664
No 88
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.67 E-value=0.58 Score=39.68 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=44.0
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
+.|=..++||.+|+|+.|+.++....+.+|+......-...++.++.+.
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itke 121 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKE 121 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhc
Confidence 5667889999999999999999999999999988888888888888776
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=89.31 E-value=0.68 Score=40.00 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=41.4
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
++.+||-.|+|++.+++.+.|+.+|+.+..+.-..+....-.++.+..|+..
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999998755555555566666666553
No 90
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=88.79 E-value=0.7 Score=35.71 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=37.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc---hHHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERI 49 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~---~~~~wi~k~~~~l 49 (306)
++++|..|..++..++|+.|...|+.+....|++. ....++..+-...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 52 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ 52 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999988763 3444455554433
No 91
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=88.20 E-value=0.75 Score=39.29 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=20.1
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
+|+.+|.+|+++++|+.|..+|++|..+.|.+..
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 4556666666666666666666666666555433
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=88.05 E-value=0.7 Score=43.35 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=20.1
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
.+|+.+|.+|..+++|+.|..+|+++.+++|++.
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4555566666666666666666666666665543
No 93
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.99 E-value=0.54 Score=45.75 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=44.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
.|||-|||.|-+.|+..++|+.+++.+..|.|..-.|..-.+.+...++..
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhh
Confidence 379999999999999999999999999999999877777777776655554
No 94
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=87.70 E-value=4.2 Score=31.87 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=48.9
Q ss_pred CeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC-----C---ceEEEcccccccccCCCceEEEe-CCEEEEE
Q 021892 115 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR 179 (306)
Q Consensus 115 ~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~-----~---~~y~~~l~L~~~I~pe~s~~kv~-~~KIEI~ 179 (306)
+.-.|.|-+.+..++++.|.+.++.|.|+..... | ..|.-.+.|-..|+++..+-.+. ...+.|.
T Consensus 15 ~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 15 EPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 3455889999999999999999999999875321 1 13555678989999998877777 4555554
No 95
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.16 E-value=0.65 Score=48.04 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=44.2
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
.|+|=.|+.|++.++|+.|..+|++|.+++|....|..-+-....+++..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence 47888999999999999999999999999999999887777777766664
No 96
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=86.61 E-value=4.7 Score=35.47 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=55.4
Q ss_pred eeeecCCC-eEEEEEEecCCCCCc-cEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCC
Q 021892 108 HEFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 185 (306)
Q Consensus 108 ~dWyQt~~-~V~ItI~~k~v~~e~-v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~ 185 (306)
.+=.+.++ .++|.--++||..++ +.|.+..+...|.+... ..|.-.+.|-.++ ++..+..+...-+||+|.+.+.
T Consensus 94 vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~--~~~~krv~L~~~~-~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 94 VDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG--EKYLKRVALPWPD-PEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred eeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC--CceEeeEecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence 44455555 688888899998777 88888866666665432 2466678888774 6777888999999999998653
No 97
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=86.59 E-value=0.85 Score=32.25 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=34.0
Q ss_pred hhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 12 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 12 ~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
++..|+|+.|...|+++...+|++..+...+..|-.+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 40 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ 40 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999998888888665544
No 98
>PRK15331 chaperone protein SicA; Provisional
Probab=86.49 E-value=1.3 Score=38.61 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=37.0
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
..+|+.|.||+.+++.+.|+.+|+.+.+ .|.+..|..+-...=..|..
T Consensus 106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999998 46766666655554444444
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=86.01 E-value=0.56 Score=40.10 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
+.+||++|..|+.+++|++|..+|+++..+.++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 68 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDP 68 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 5689999999999999999999999999887754
No 100
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=85.00 E-value=1.2 Score=46.03 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
+.+|+.+|.+|+.+++|+.|+.+|+++.+++|++.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 45677777777777777777777777777777654
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.36 E-value=1.2 Score=41.45 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=30.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
+.|+|..|.+||.+++|+.|..+|+...+..|+++.
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 358999999999999999999999999988886543
No 102
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.35 E-value=1.7 Score=31.14 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=36.1
Q ss_pred hhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 9 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 9 Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
..+|++.++|+.|+.+++++..++|.+..+-.-...|...+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~ 45 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY 45 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH
Confidence 45789999999999999999999999887766666666665553
No 103
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=83.24 E-value=1.8 Score=36.57 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=27.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 42 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi 42 (306)
+.+++..|.+|+..++|+.|...|+++.+.+|.+...-..+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 71 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLAL 71 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 35667777777777777777777777777776655443333
No 104
>PRK12370 invasion protein regulator; Provisional
Probab=83.18 E-value=1.5 Score=44.82 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=21.7
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
+.+|+.+|.+|+.+|+|++|...|+++.+++|.+..
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 345566666666666666666666666666665543
No 105
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=82.96 E-value=1.8 Score=36.72 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=36.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
+.+++.+|.+|+.+++|+.|...|+++.++.|.+......+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999876544444333
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=82.75 E-value=2.3 Score=37.72 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=38.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH-HHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF-TNLIKECEERIA 50 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~-~~wi~k~~~~l~ 50 (306)
+.++|.+|.+|+..++|+.|...|+.+....|.++.. ..|...+...+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~ 82 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK 82 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999987643 345555544443
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=82.75 E-value=1.1 Score=39.83 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=33.4
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
.++|++|.+|+.+++|+.|...|+++.+..|+++.+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 588999999999999999999999999999987764
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=82.30 E-value=1.5 Score=46.92 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=42.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
+-.|+|.|.||..|++|+.|+.+|+++..++|.+-....-+.-+...+...
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~ 499 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNH 499 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH
Confidence 457999999999999999999999999999998877766666665555443
No 109
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=81.28 E-value=1.6 Score=28.15 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=25.2
Q ss_pred hhhhhhhhhhhccccHHHHHHHHH--HhhccCCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALE--KGASLAPGD 35 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~--~a~~~~~~d 35 (306)
+..|-.|-.+|..|+|++|...|+ -+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 346677899999999999999955 777777653
No 110
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=81.26 E-value=1.8 Score=44.23 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=30.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 40 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~ 40 (306)
+.+|+.+|.+|...|++++|...|++|..++|.++++--
T Consensus 453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 457888888888888888888888888888888876443
No 111
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=80.99 E-value=1.5 Score=40.20 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=24.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
.|.|..|.+||++++|+.|...|++..++.|+++.+
T Consensus 70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 355666777777777777777777777777766544
No 112
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=80.84 E-value=3.2 Score=35.08 Aligned_cols=32 Identities=9% Similarity=-0.154 Sum_probs=17.6
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
+|+..|++|+.+++|+.|+.+|+++..+.|..
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 45555555555555555555555555555443
No 113
>PRK12370 invasion protein regulator; Provisional
Probab=80.28 E-value=2.1 Score=43.78 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=37.8
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
++.+|+.+|.+++.+++|++|..+|++|.+++|++...-..+..+
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356888999999999999999999999999999988765555444
No 114
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=78.85 E-value=2.9 Score=43.16 Aligned_cols=34 Identities=21% Similarity=0.017 Sum_probs=21.0
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
.+|+.+|.+++.+++|+.|+.+|+++.+++|...
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4556666666666666666666666666666543
No 115
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=78.84 E-value=3 Score=35.26 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=30.6
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
+.+|++.|++++.+++|+.|+..|.+|..+.++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 68 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP 68 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence 4678999999999999999999999999987653
No 116
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.22 E-value=3.2 Score=42.15 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=39.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 50 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~ 50 (306)
|.++--+|..||..|+|++|..+|..|.++.|+++.|=+=+.-|=..|.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lg 163 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLG 163 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHh
Confidence 4566779999999999999999999999999998876555555444433
No 117
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=77.72 E-value=2.5 Score=38.78 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 40 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~ 40 (306)
+..|+.+|.++..+|+++.|+.+|++|.+++|+|..+..
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~ 184 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN 184 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 356889999999999999999999999999999887553
No 118
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=77.47 E-value=3.5 Score=40.29 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=45.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
+.+|--|+-||..-+.|++|..+|++|.++++++..+..=+.+++...+..
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 457788999999999999999999999999999999999999987766553
No 119
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=77.38 E-value=2.9 Score=43.20 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 42 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi 42 (306)
+.++|.+|.+|+.+++|++|+..|+++.++.|.+......+
T Consensus 56 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 96 (899)
T TIGR02917 56 AEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL 96 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence 34666677777777777777777777776666554443333
No 120
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=76.38 E-value=2.7 Score=38.53 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=33.6
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
.+.-.|.+|+.|++|+.|+..|+++...+|+|+.+..-...+
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccc
Confidence 345679999999999999999999999999998776655544
No 121
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.20 E-value=2.6 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=21.5
Q ss_pred hhhhhhhhhhhccccHHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALE 26 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~ 26 (306)
-+++-.|.+++.+|++++|...|+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=72.82 E-value=3.1 Score=36.72 Aligned_cols=35 Identities=31% Similarity=0.300 Sum_probs=25.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
.|.|+.|.+||.+++|..|...|+.-...-|+.+.
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 57788888888888888888888888877777654
No 123
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.72 E-value=3.1 Score=38.34 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=37.6
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 48 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~ 48 (306)
+++.+-+|+.|+..+++..|+..|++|.+++|+. ...|.-+....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~--~~a~~~~A~~Y 79 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY--YLAHLVRAHYY 79 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 5788899999999999999999999999999975 45566555443
No 124
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.70 E-value=9.9 Score=28.78 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=37.1
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc-------CCCCchHHHHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL-------APGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~-------~~~d~~~~~wi~k~~~~l~~ 51 (306)
|..|.++++-|=+.++|.+|+.+|+.|.++ -|+++.-.....++...+..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999888764 56666655555555554444
No 125
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=71.67 E-value=6.2 Score=32.37 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=24.5
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
.|++..|.+|.+||+|++|+..|+.+..-.|+
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 46677788888888888888888887776666
No 126
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=70.97 E-value=5 Score=44.85 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=34.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 41 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~w 41 (306)
+.+++.+|.+|+.+++|++|+.+|+++.+++|++.....|
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 5688999999999999999999999999999987665555
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=70.71 E-value=5.9 Score=42.07 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 44 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k 44 (306)
+.+++.+|+++-.+++|++|...|+++...+|++...-.+...
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4566666666666666666666666666655554444433333
No 128
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=70.09 E-value=5.4 Score=41.19 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=40.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 48 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~ 48 (306)
+.++|++|..+++.++|++|...|+++....|.+......+..+-..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 68 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA 68 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999988766666555443
No 129
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=69.15 E-value=4.3 Score=34.53 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=31.9
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
.|.+..|-+||..++|+.|...+++=.+|+|+.+.
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 57889999999999999999999999999998776
No 130
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=68.26 E-value=8.4 Score=42.58 Aligned_cols=50 Identities=6% Similarity=-0.078 Sum_probs=39.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHH---HHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT---NLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~---~wi~k~~~~l~~ 51 (306)
+.+++.+|.+|+.+++|++|+.+|+++.+++|+...+. -|+...+..+..
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence 56788999999999999999999999999999887766 455554444443
No 131
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.65 E-value=6.8 Score=40.30 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=38.3
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
++.|+.++|+.....++-..|..+|++|.+|+|+.-..-+=+..+
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 368999999999999999999999999999999986655544443
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=66.57 E-value=7.8 Score=31.98 Aligned_cols=33 Identities=36% Similarity=0.401 Sum_probs=29.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
.|.|+.|.++|..++|+.|...|+.+....+++
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 578999999999999999999999999977443
No 133
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.92 E-value=5.9 Score=35.12 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=36.9
Q ss_pred hhhhhhhhhhhhcccc-----------HHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRFTNLIKECEE 47 (306)
Q Consensus 2 aka~~R~Gia~~~l~~-----------y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~ 47 (306)
..|++=.|+||+.+.. |+.|..+|++|...+|++.....=+..+.+
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 4678889999988866 899999999999999999887777776654
No 134
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=65.55 E-value=6.9 Score=36.09 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=43.4
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
|++-||+++|--++|..|+.+|.+--+-+|+|+==.-|+--.+.+|.-
T Consensus 135 a~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP 182 (297)
T COG4785 135 AHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDP 182 (297)
T ss_pred HHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCH
Confidence 688899999999999999999999999999999999999888777643
No 135
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=65.31 E-value=8.9 Score=39.97 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=42.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
..+-|-+|..+|.+++|++|+.-|+.-+++.|++..+---+-++-..+...
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 456788999999999999999999999999999988877777777666654
No 136
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.77 E-value=9.2 Score=37.15 Aligned_cols=39 Identities=31% Similarity=0.276 Sum_probs=32.1
Q ss_pred Chhhhhhhhhhhhcccc--------------HHHHHHHHHHhhccCCCCchHH
Q 021892 1 MSKAYWRKATACMKLEE--------------YETAKVALEKGASLAPGDSRFT 39 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~--------------y~~A~~~l~~a~~~~~~d~~~~ 39 (306)
+.|||+|-+.|+|.|++ +++|..+.+.+-...++|..+-
T Consensus 152 h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~~~~L 204 (390)
T KOG0551|consen 152 HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKNDKLKL 204 (390)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcchHHHH
Confidence 46999999999999999 7788888888777777776533
No 137
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=63.69 E-value=7.3 Score=24.24 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=22.5
Q ss_pred hhhhhhhh--hhhhcc-----ccHHHHHHHHHHhhccC
Q 021892 2 SKAYWRKA--TACMKL-----EEYETAKVALEKGASLA 32 (306)
Q Consensus 2 aka~~R~G--ia~~~l-----~~y~~A~~~l~~a~~~~ 32 (306)
+.|.|+.| ..|+.- +++..|...|++|.+.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 46788888 433333 36899999999998764
No 138
>PRK11906 transcriptional regulator; Provisional
Probab=63.34 E-value=6.3 Score=39.65 Aligned_cols=38 Identities=5% Similarity=-0.085 Sum_probs=30.9
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
++.|+++.|.++..+++++.|...|++|..++|+....
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~ 374 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL 374 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH
Confidence 36788888888888888888888888888888887653
No 139
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=62.57 E-value=5.7 Score=37.46 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=29.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
+.+..+++|+.++++|++|...|+.|.+.+|+|+.
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 45678899999999999999999999999998865
No 140
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=62.18 E-value=10 Score=39.70 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=24.4
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 43 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~ 43 (306)
.+++.+|.+|+.+++|++|+..|+++..++|.+..+...+.
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35555666666666666666666666666666555444433
No 141
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=62.05 E-value=10 Score=39.81 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=27.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 43 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~ 43 (306)
+.+|+..|.+++.+++++.|...|+++.+++|++...-..+.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la 151 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHL 151 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 346666777777777777777777777777776655444333
No 142
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.84 E-value=10 Score=36.83 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=41.0
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
|+-.|+-|+-|.|+|++|-.|+.+-.+|..++|+...---.-++|-.+|+.
T Consensus 118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 466789999999999999999999999999999876555555566555555
No 143
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=61.35 E-value=9.8 Score=37.30 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=27.1
Q ss_pred hhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 7 RKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 7 R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
-+|.-||..|+|++|..+|.+|..+.|-++.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV 132 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV 132 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCcc
Confidence 5799999999999999999999999885443
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=60.71 E-value=9 Score=41.83 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=35.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 42 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi 42 (306)
.|+|.+|.||=++++++.|...++++.+++|.+..+-.-+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 5899999999999999999999999999999998754433
No 145
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=60.61 E-value=11 Score=32.74 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=39.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHhh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFTNLIKECEERIAEE 52 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~-d~~~~~wi~k~~~~l~~~ 52 (306)
.+|..+|.+|+..|+++.|+.+|.++.++.-+ ...+.+++..+.--|...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~ 87 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG 87 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999987532 445777777776655553
No 146
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=60.31 E-value=8.8 Score=33.82 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=29.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
+.++|+.|..+|..|+|..|...|+.....-|..+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~ 39 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP 39 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh
Confidence 57899999999999999999999999999887643
No 147
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.23 E-value=20 Score=26.66 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=34.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhc-------cCCCCchHHHHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGAS-------LAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~-------~~~~d~~~~~wi~k~~~~l~~ 51 (306)
|.-++++|+-+=..++|++|+..|..|.+ ..++...-.....+|...+..
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~R 62 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDR 62 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 34577888888888999888888777765 355544455556666655554
No 148
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=59.32 E-value=5.7 Score=40.81 Aligned_cols=50 Identities=24% Similarity=0.118 Sum_probs=40.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
.|||||+.-|++.|++|.+|+.+...++-..|+|.....-..-....|..
T Consensus 445 ~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a 494 (758)
T KOG1310|consen 445 QKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA 494 (758)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence 48999999999999999999999999999999877655554444444444
No 149
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=58.90 E-value=4.6 Score=39.51 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=22.2
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
.|+||||..|..+++-..|+.+|.+..++.|+
T Consensus 73 ~aifrRaT~yLAmGksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 73 QAIFRRATVYLAMGKSKAALQDLSRVLELKPD 104 (504)
T ss_pred HHHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence 46677777777777777777777777766664
No 150
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=58.49 E-value=9 Score=35.68 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.0
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
+++|-=+|++|-.+++++.|...|-++.+|.|+++.
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~ 169 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS 169 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch
Confidence 456667788888888888888888888888888766
No 151
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=58.18 E-value=13 Score=41.09 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=29.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 46 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~ 46 (306)
+.+++.+|.++..++++++|+..|+++.+++|++..+..-+..+-
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345666777777777777777777777777777766554444443
No 152
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=58.05 E-value=13 Score=36.30 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=38.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
+..++-.|..|+..++|..|..+|+++.+..|++..+ .++..+..++..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~ 376 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHK 376 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCC
Confidence 3456778999999999999999999999999987653 366666555543
No 153
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.69 E-value=14 Score=36.41 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=37.4
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 6 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 6 ~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
+-.|-|+|||++|++|+..++...+-+--+..+-.-++-|.-.|..-
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 34578999999999999999999986666677777777777666553
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=57.44 E-value=9.9 Score=33.15 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=28.5
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 6 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 6 ~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
+=.|.+|-.+++|+.|...|..|..++++|+...-....|-..|.+
T Consensus 75 ~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 75 MGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3345556666666666666666666666666666666666555544
No 155
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.14 E-value=23 Score=26.73 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=31.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhc-------cCCCCchHHHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGAS-------LAPGDSRFTNLIKECEERIA 50 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~-------~~~~d~~~~~wi~k~~~~l~ 50 (306)
|..++++++-+=.-++|++|+.+|..|.+ +.|++..-..-..++...+.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~ 61 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMD 61 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 44577888888888888888877776654 46655444444444444443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=56.80 E-value=22 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=23.2
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEK 27 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~ 27 (306)
.|.||.+.+++.+++|+.|+..|+.
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5889999999999999999999966
No 157
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=56.76 E-value=8.2 Score=29.13 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=25.2
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhh
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGA 29 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~ 29 (306)
||++|++-|..|+..+++..|+.+|.=|.
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~ 62 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFSYAH 62 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57899999999999999999999997664
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=56.72 E-value=14 Score=33.84 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=39.6
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHH---HHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT---NLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~---~wi~k~~~~l~~ 51 (306)
+..+|..|..++..++|+.|...|+......|..+-.. -|+..+..++++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~ 84 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD 84 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Confidence 35689999999999999999999999999999765443 566666555444
No 159
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=55.59 E-value=13 Score=39.44 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=35.4
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 47 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~ 47 (306)
..||++|.|...|++++.|..+|.+|..++|+. +..|-.-...
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~--~eaWnNls~a 562 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN--AEAWNNLSTA 562 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc--hhhhhhhhHH
Confidence 368999999999999999999999999999975 4555444333
No 160
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.31 E-value=30 Score=26.13 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=35.5
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc-------C-CCCchHHHHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL-------A-PGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~-------~-~~d~~~~~wi~k~~~~l~~ 51 (306)
|..|.|+++-+=+.++|++|+.+|+.|.++ . ++|.....-..+|...|..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~R 63 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDR 63 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 456788888888999999998888887653 3 5566655556666655554
No 161
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=55.07 E-value=18 Score=34.19 Aligned_cols=36 Identities=8% Similarity=-0.135 Sum_probs=27.1
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
.+++..|.+|+..++|+.|+..|+++.+++|.+...
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 143 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGA 143 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHH
Confidence 356777888888888888888888888877665443
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=16 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 43 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~ 43 (306)
++-+...|-+|+.++++..|..+|.+|..+.|+.+.+..=+.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a 197 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA 197 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456788999999999999999999999999998776544433
No 163
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.41 E-value=11 Score=38.94 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=32.6
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
++.+.=+||.||-.++|+.|..+|+.|....|+|-.+
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l 466 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL 466 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH
Confidence 3566678999999999999999999999999998643
No 164
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=54.33 E-value=14 Score=37.90 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=25.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 40 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~ 40 (306)
..|+.+|-+|-|.|++..|..+++.|+++|..|.-|-.
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNs 266 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINS 266 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHH
Confidence 45667777777777777777777777777776655443
No 165
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=54.22 E-value=17 Score=21.94 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=24.2
Q ss_pred hhhhhhhhhhhhc----cccHHHHHHHHHHhhccC
Q 021892 2 SKAYWRKATACMK----LEEYETAKVALEKGASLA 32 (306)
Q Consensus 2 aka~~R~Gia~~~----l~~y~~A~~~l~~a~~~~ 32 (306)
+.|+|+.|..|+. .+++..|...|++|.+.+
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 3578888888775 359999999999987654
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=52.99 E-value=17 Score=29.75 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=32.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 37 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~ 37 (306)
+.++|.++.++-.+|+.++|...|+++.+.+..+..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~ 36 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD 36 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Confidence 468999999999999999999999999998877653
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=52.91 E-value=12 Score=37.83 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=41.5
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC---chHHHHH-HHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLI-KECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d---~~~~~wi-~k~~~~l~~ 51 (306)
|.+||-.|..++..|+.++|...+++|..|+|.- ..++-|+ .-|..-|++
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKN 425 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhh
Confidence 6789999999999999999999999999999964 3377788 555555544
No 168
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=52.49 E-value=31 Score=24.88 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=30.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc-------CCCCchHHHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL-------APGDSRFTNLIKECEERIA 50 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~-------~~~d~~~~~wi~k~~~~l~ 50 (306)
|..+..+|+-+=+.|+|++|+..|..|.++ .+++..-..+..++..-+.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~ 60 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLE 60 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 445677778888888888888777776653 4544443334444444443
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.56 E-value=25 Score=32.98 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=32.1
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
+.|||=+|-++|.+++|+.|-..|..+.+--|+.+.-
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 5689999999999999999999999999877765543
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.51 E-value=13 Score=35.46 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=34.4
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021892 6 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 50 (306)
Q Consensus 6 ~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~ 50 (306)
--.|.-+++-++|.+|+..|.+|.+|+|+|+.+--=.+.+..+|.
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg 129 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG 129 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Confidence 345888899999999999999999999999886443333333333
No 171
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=50.31 E-value=12 Score=37.72 Aligned_cols=29 Identities=28% Similarity=0.200 Sum_probs=27.4
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
-|||-+|.+|-+++++++|+.+|++|.++
T Consensus 113 ~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 113 AAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35999999999999999999999999997
No 172
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=50.19 E-value=36 Score=24.99 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=30.0
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhc-------cCCCCchHHHHHHHHHHHHHh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGAS-------LAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~-------~~~~d~~~~~wi~k~~~~l~~ 51 (306)
..+.++|+-+=..++|++|+..|..|.+ ..+++..-.....+|...+..
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~R 62 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDR 62 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4456677777677778777777666654 455544445555555555544
No 173
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=50.14 E-value=24 Score=36.14 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=40.7
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
++|-.+.+|-++++|+.|+.+..+|.++.|+-..+-++..++-++...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 567789999999999999999999999999988888877777555433
No 174
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=49.84 E-value=19 Score=26.55 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhh
Q 021892 247 ALNKFFQEIYADADEDTRRAMKKSFV 272 (306)
Q Consensus 247 ~l~~~fq~iY~~adddtkRAM~KSf~ 272 (306)
+|--||.-||.++|++.|..|+.+-.
T Consensus 37 GLGVlFE~~W~~~~~~ek~~m~~~l~ 62 (65)
T PF14098_consen 37 GLGVLFEVIWKNSDESEKQEMVNTLE 62 (65)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
No 175
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=49.63 E-value=22 Score=33.69 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=27.8
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
.+|-+|+.++..++|+.|...|+++.+++|++..+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVEL 71 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHH
Confidence 45666888888888999999999988888876543
No 176
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=49.32 E-value=21 Score=40.02 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=32.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 39 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~ 39 (306)
+.+++.+|.+|+.+++|++|...|+++..++|.+....
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45788899999999999999999999999999876543
No 177
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.22 E-value=35 Score=19.58 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 021892 16 EEYETAKVALEKGASLAPGDSRFTNLIKECEER 48 (306)
Q Consensus 16 ~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~ 48 (306)
++++.|...|++|....| .....|+.-++.+
T Consensus 1 ~~~~~~r~i~e~~l~~~~--~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFP--KSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCC--CChHHHHHHHHHH
Confidence 467899999999999888 4678898887654
No 178
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=48.89 E-value=25 Score=28.73 Aligned_cols=47 Identities=26% Similarity=0.257 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 49 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l 49 (306)
.++.+.+.++...++|+.|...++++..++|-|..+-..+-+|-...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~ 109 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ 109 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 45677888899999999999999999999999988777766654443
No 179
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.36 E-value=49 Score=32.61 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=49.2
Q ss_pred ecCCCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCCCceEEEcccccccccCCCceEEEeCCEEEEEEEeCCCC
Q 021892 111 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPI 186 (306)
Q Consensus 111 yQt~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~~~~y~~~l~L~~~I~pe~s~~kv~~~KIEI~L~K~~~~ 186 (306)
+=++-.=+|+|+++|-..-.+..++.+. |.|.+.+..-..=..+.+|-.+..|+.-++.|.+.++-+++.|+...
T Consensus 64 ~isg~~etV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tk 138 (403)
T COG4856 64 FISGQPETVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTK 138 (403)
T ss_pred cccCCceEEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEE
Confidence 3444445677777775444445555444 66666543211113356777888999999999999999999987654
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=48.16 E-value=25 Score=32.69 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=41.0
Q ss_pred hhhhhhhhhh-hccccHHHHHHHHHHhhccCCCCc---hHHHHHHHHHHHHHh
Q 021892 3 KAYWRKATAC-MKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAE 51 (306)
Q Consensus 3 ka~~R~Gia~-~~l~~y~~A~~~l~~a~~~~~~d~---~~~~wi~k~~~~l~~ 51 (306)
.+.|..++++ +..++|+.|...|+......|++. ...-|+..+-.....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~ 195 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK 195 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC
Confidence 6789999998 667999999999999999999873 678888888665444
No 181
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=46.06 E-value=25 Score=37.47 Aligned_cols=34 Identities=9% Similarity=-0.150 Sum_probs=18.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
+.+|++.|-+..+++.|++|...|+.+.++.|+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~ 119 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS 119 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 3455555555555555555555555555555544
No 182
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=45.81 E-value=26 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHh
Q 021892 247 ALNKFFQEIYADADEDTRRAMKKS 270 (306)
Q Consensus 247 ~l~~~fq~iY~~adddtkRAM~KS 270 (306)
.|..+|..+|..+|+++|+.|.+=
T Consensus 30 ~l~~~~~~~~~~~~~~~~~kv~rl 53 (64)
T PF04818_consen 30 VLPDAFAHAYKNVDPEVRKKVQRL 53 (64)
T ss_dssp CHHHHHHHHCCCS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 488999999999999999999873
No 183
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.82 E-value=20 Score=33.92 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=28.6
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhccCCCCchH
Q 021892 6 WRKATACMKLEEYETAKVALEKGASLAPGDSRF 38 (306)
Q Consensus 6 ~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~ 38 (306)
.-+.+||..+++|++|...|+.|..-+++|+.+
T Consensus 211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 345678889999999999999999999998654
No 184
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=44.29 E-value=21 Score=26.27 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhh
Q 021892 247 ALNKFFQEIYADADEDTRRAMKKSFV 272 (306)
Q Consensus 247 ~l~~~fq~iY~~adddtkRAM~KSf~ 272 (306)
+|--||..+|..+|+..|..|+.+-.
T Consensus 36 GLGVlFE~~W~~~~~~ek~~m~~~l~ 61 (65)
T TIGR03092 36 GLGVLFEAIWKHANEQEKDEMLETLE 61 (65)
T ss_pred ccHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 48899999999999999999998643
No 185
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=44.26 E-value=34 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 021892 246 AALNKFFQEIYADADEDTRRAMKKSFV 272 (306)
Q Consensus 246 a~l~~~fq~iY~~adddtkRAM~KSf~ 272 (306)
+.|.++.++=+...++|+|+++.+|.+
T Consensus 18 ~~L~~lL~~~~~~L~p~lR~~lv~aLi 44 (52)
T PF08158_consen 18 QELIDLLRNHHTVLDPDLRMKLVKALI 44 (52)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 459999999999999999999999865
No 186
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.22 E-value=28 Score=34.96 Aligned_cols=45 Identities=13% Similarity=-0.044 Sum_probs=38.0
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021892 6 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 50 (306)
Q Consensus 6 ~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~ 50 (306)
-..|-.+-..++|++|+.+|.+|..++|++..-..=+++.++...
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 346777788899999999999999999999988888887766554
No 187
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=43.81 E-value=31 Score=36.83 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=29.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 40 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~ 40 (306)
..+++.+|.++..+++++.|+..|++|.+++|++..+..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 356777888888888888888888888888887755433
No 188
>PLN02789 farnesyltranstransferase
Probab=43.80 E-value=24 Score=33.84 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=30.1
Q ss_pred hhhhhhhhhhhhccc-cHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021892 2 SKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKE 44 (306)
Q Consensus 2 aka~~R~Gia~~~l~-~y~~A~~~l~~a~~~~~~d~~~~~wi~k 44 (306)
..|++-||.++.+|+ +|++|+..+.++.+.+|++.. .|-.+
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq--aW~~R 112 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ--IWHHR 112 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--HhHHH
Confidence 356777788888887 578888888888888886544 35544
No 189
>PLN02789 farnesyltranstransferase
Probab=43.65 E-value=19 Score=34.49 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=18.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
.|+.=||.++.++++|+.|+.++.++.+.+|.+
T Consensus 143 ~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 143 HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 345555555555555555555555555555543
No 190
>PF09829 DUF2057: Uncharacterized protein conserved in bacteria (DUF2057); InterPro: IPR018635 The proteins in this entry are functionally uncharacterised.
Probab=42.97 E-value=18 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Q 021892 246 AALNKFFQEIYADADEDTRRAMKK 269 (306)
Q Consensus 246 a~l~~~fq~iY~~adddtkRAM~K 269 (306)
.....|+|.+|..||+++|++.++
T Consensus 165 ~~~~~~Lq~wy~qAs~~eRk~F~~ 188 (189)
T PF09829_consen 165 SEALQMLQYWYLQASKEERKAFLK 188 (189)
T ss_pred ccHHHHHHHHHHhCCHHHHHHHhc
Confidence 346789999999999999999885
No 191
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=42.97 E-value=44 Score=31.18 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=14.6
Q ss_pred hhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 8 KATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 8 ~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
.|.++..+++|+.|...|+++.+++|.+.
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~ 148 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDA 148 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 34445555555555555555555555443
No 192
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.92 E-value=35 Score=31.57 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=34.0
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
..|-=.|+|-+..|+++.|..+|+++.+++|+-+.-...+.+.
T Consensus 140 ~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 140 DTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 4455679999999999999999999999999866544444444
No 193
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=42.15 E-value=35 Score=36.45 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=43.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 50 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~ 50 (306)
+-.||-+|..+-..+..++|+.+|..|..++|++.....-+.+|-.++.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 3468999999999999999999999999999999999888888865554
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.72 E-value=31 Score=34.53 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=37.8
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 46 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~ 46 (306)
|+.|+|-||.++|-+.+-+.|...|++|..++|.......--..|+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 4678999999999999999999999999999998765444433333
No 195
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=40.56 E-value=65 Score=23.56 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=19.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
..+..+|+.+=..++|++|+..|..|.+
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667777777888877777776654
No 196
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=40.51 E-value=23 Score=38.68 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=35.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch------HHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR------FTNLIKECEER 48 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~------~~~wi~k~~~~ 48 (306)
|..||-+|-+|+.+|+|+.|..+|..+.+.+++.-. -.+.|...+..
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 567899999999999999999999999988887622 24555554433
No 197
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=40.39 E-value=21 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=27.9
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
.||-.||+.|-.+++-+.|..+|+.|.+|+..
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 36888999999999999999999999998753
No 198
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.36 E-value=47 Score=33.82 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=43.2
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
.|+|=.|.+|=-|+--.=|+-+|++|.++-|.|+.+=+=+-.|=.+|...
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 58888999999999999999999999999999998887788887776554
No 199
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=39.85 E-value=36 Score=36.34 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=33.2
Q ss_pred hhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHH
Q 021892 5 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 44 (306)
Q Consensus 5 ~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k 44 (306)
++.+|.++...++++.|+..|+++.++.|++..+...+..
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7788999999999999999999999999988766555443
No 200
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.38 E-value=35 Score=35.36 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=32.3
Q ss_pred hhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 7 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 7 R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
-.|-+|-.+++|++|+.+|++|..+.|++...-.=+.-|...+.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 356677778888888888888888888777766666666555544
No 201
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=38.68 E-value=27 Score=25.96 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhh
Q 021892 247 ALNKFFQEIYADADEDTRRAMKKSF 271 (306)
Q Consensus 247 ~l~~~fq~iY~~adddtkRAM~KSf 271 (306)
+|--||..||.++|+..|..|+.+-
T Consensus 39 GLGVlFE~~W~~~~~~ek~~m~~~l 63 (68)
T PRK02955 39 GLGVLFEVIWKNADENEKDEMLETL 63 (68)
T ss_pred cchhHHHHHHHhcCHHHHHHHHHHH
Confidence 4889999999999999999999864
No 202
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=37.67 E-value=42 Score=31.31 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=36.9
Q ss_pred hhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 8 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 8 ~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
.|...+..++|..|...|.++..+.|+|..+-+-+--+=..+..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 78899999999999999999999999998887776665444433
No 203
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=37.24 E-value=30 Score=25.01 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=30.8
Q ss_pred hhhhhhhhhccccHHHHHHHHHHhhccCCCC--chHHHHHHHHHHHH
Q 021892 5 YWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERI 49 (306)
Q Consensus 5 ~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d--~~~~~wi~k~~~~l 49 (306)
.|+.|+.+|+.++|=+|++.|+..=...+.+ .-+.-.|+-+-...
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~ 48 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALY 48 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHH
Confidence 4789999999999999999999987654433 22444555444433
No 204
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=37.13 E-value=24 Score=34.47 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=26.1
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
|.||||.|..+...++|.+|...|+.|.+
T Consensus 248 A~A~y~~a~~l~e~~k~GeaIa~L~~A~~ 276 (353)
T cd09243 248 AYAYCYHGETLLAKDKCGEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHHHhHhcchHHHHHHHHHHHHH
Confidence 67999999999999999999998887764
No 205
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.01 E-value=28 Score=27.30 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=25.9
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhh
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGA 29 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~ 29 (306)
+|++||-=+..|+..|+|..|+.+|.-|.
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~ 68 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALSYAH 68 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 47889999999999999999999997765
No 206
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=35.80 E-value=58 Score=30.32 Aligned_cols=49 Identities=10% Similarity=-0.153 Sum_probs=37.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCch--HHHHHHHHHHHHHh
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAE 51 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~--~~~wi~k~~~~l~~ 51 (306)
-+++..|.+|+.++++++|...|+++..+.|.+.. +..|.......+..
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 46778899999999999999999999999875443 34555555544443
No 207
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=35.70 E-value=56 Score=31.66 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=36.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccC---------CCCc---hHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLA---------PGDS---RFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~---------~~d~---~~~~wi~k~~~~l~~~ 52 (306)
|.||||.|+.+...++|-+|...|+.|..+- ..+. .+..+...++..|+..
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~~~~~~~~~~~l~~~i~~~l~~a 299 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALAACKEALKEARYGNKAVLEDLQGLKDIVKESLKRA 299 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999988877631 1111 3555566666666664
No 208
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=35.60 E-value=25 Score=36.01 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=27.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
|-+|.+.+++|++.++|++|..++++|.++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEI 312 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 457889999999999999999999999875
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=35.40 E-value=53 Score=29.76 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=34.8
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhcc-CCCCchHHHHHHHHHHHHH
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASL-APGDSRFTNLIKECEERIA 50 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~-~~~d~~~~~wi~k~~~~l~ 50 (306)
-.||.|+++-.+|+|.+|...|+.+..= =..|..+--=+.+.+-.|.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 3689999999999999999999999873 3356655555555444443
No 210
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.85 E-value=30 Score=26.59 Aligned_cols=30 Identities=33% Similarity=0.306 Sum_probs=26.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLA 32 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~ 32 (306)
-|.+.+|..++.+|++++|...|+.|..+.
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998864
No 211
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=34.38 E-value=51 Score=31.80 Aligned_cols=51 Identities=6% Similarity=0.101 Sum_probs=39.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccC-------CCCchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLA-------PGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~-------~~d~~~~~wi~k~~~~l~~~ 52 (306)
|.||||.|+++...++|-+|...|+.|.++- +....+...+..++..|+..
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~~~~~~~~~l~~~i~~~l~~a 312 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRAGEYVDVKDFAAKISRALTAA 312 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999988776631 22223777777888877775
No 212
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.06 E-value=47 Score=25.65 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
..+.|..+.+|+.-++|+.|+..|-.....+++
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 357899999999999999999999999988764
No 213
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=34.02 E-value=44 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=30.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
++.+.++|+=+|+.++.+.|+..++++.+.-++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~ 38 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD 38 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC
Confidence 578899999999999999999999999997765
No 214
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=33.75 E-value=27 Score=31.06 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhhcc----------ccHHHHHHHHHHhhccCCCC
Q 021892 2 SKAYWRKATACMKL----------EEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 2 aka~~R~Gia~~~l----------~~y~~A~~~l~~a~~~~~~d 35 (306)
+.+++|-|.|+.+| +-|++|..-|+.|..++|+.
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence 57899999999988 44678899999999999975
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.58 E-value=38 Score=33.55 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=27.4
Q ss_pred hhhhhhhccccHHHHHHHHHHhhccCCCCchHHH
Q 021892 7 RKATACMKLEEYETAKVALEKGASLAPGDSRFTN 40 (306)
Q Consensus 7 R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~ 40 (306)
-+|..||..++|..|...|++|..+-..+..+..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ 246 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE 246 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH
Confidence 4799999999999999999999886554444444
No 216
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.56 E-value=46 Score=34.91 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
.-||-.|.+|..|++...|+++|..|..++|+...+..=+.++
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 4578899999999999999999999999999988766555443
No 217
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=33.10 E-value=40 Score=31.22 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.4
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
.||+.+++++..+++..|...|++..+.+|.=.. ++.-.-++..|+..
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHH
Confidence 4689999999999999999999999998875222 33444455556554
No 218
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=32.81 E-value=32 Score=23.75 Aligned_cols=9 Identities=56% Similarity=1.162 Sum_probs=7.7
Q ss_pred CCCchhHHH
Q 021892 223 RVDWDKLEA 231 (306)
Q Consensus 223 ~~DWdK~~~ 231 (306)
++|||+|+.
T Consensus 17 kvdWd~wvS 25 (49)
T PF06543_consen 17 KVDWDKWVS 25 (49)
T ss_pred ccchHHhee
Confidence 589999985
No 219
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=32.64 E-value=3.3e+02 Score=23.75 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=52.2
Q ss_pred CCeEEEEEEecCCCCCccEEEeeccEEEEEEEcCC-----C---ceEEEcccccccccCCCceEEEeCC-EEEEEEEeC
Q 021892 114 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 183 (306)
Q Consensus 114 ~~~V~ItI~~k~v~~e~v~V~f~~~~l~v~i~~~~-----~---~~y~~~l~L~~~I~pe~s~~kv~~~-KIEI~L~K~ 183 (306)
.+...|.+-+.+..++.++|...++.|.|..+... | ..|.=.+.|-..++|+.-+-.+.+. .+.|.-.|.
T Consensus 71 ~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 71 KDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred CCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCC
Confidence 44566788888889999999999999999875421 1 2455567899999999887777665 666666554
No 220
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=32.52 E-value=37 Score=33.64 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=34.8
Q ss_pred hhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 8 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 8 ~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
.+-.|...++|+.|+...++|.++.|.+ |..|..-++-.+...
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELSPSE--FETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcC
Confidence 4556888999999999999999999964 788887777766654
No 221
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=32.19 E-value=61 Score=31.62 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=26.8
Q ss_pred hhhhhhhhhccccHHHHHHHHHH--hhccCCCCchH
Q 021892 5 YWRKATACMKLEEYETAKVALEK--GASLAPGDSRF 38 (306)
Q Consensus 5 ~~R~Gia~~~l~~y~~A~~~l~~--a~~~~~~d~~~ 38 (306)
++=.|-.||.+++|+.|+.+|++ +.+..|++...
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 33579999999999999999995 66677765543
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.13 E-value=66 Score=29.50 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=23.0
Q ss_pred hhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 4 AYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 4 a~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
+|.-||.|+++|++.+.|..+-.+|.+|+|+
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 4666777777777777777777777777774
No 223
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.73 E-value=52 Score=30.80 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=39.1
Q ss_pred hhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 5 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 5 ~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
+--.|..||.-++|..|..+|.+|..++|.....-+=-..|..+++.-
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~ 60 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW 60 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh
Confidence 445799999999999999999999999998877666666676665553
No 224
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=31.32 E-value=91 Score=18.70 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhh
Q 021892 249 NKFFQEIYADADEDTRRAMKKSFV 272 (306)
Q Consensus 249 ~~~fq~iY~~adddtkRAM~KSf~ 272 (306)
...|.++..|-++++|+|-...+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~ 25 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLG 25 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456778889999999999887654
No 225
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.99 E-value=65 Score=29.90 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=45.6
Q ss_pred hhhhhhhhhhhhcc------ccHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKL------EEYETAKVALEKGASLAPG-DSRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l------~~y~~A~~~l~~a~~~~~~-d~~~~~wi~k~~~~l~~~ 52 (306)
+++|+++|.-+..+ +.++.+...|..|.+++|+ ...+..|-..+...+...
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESD 309 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999 9999999999999999984 567888888888888776
No 226
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=30.88 E-value=43 Score=30.98 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=33.2
Q ss_pred hhhhhhhhhhhhcc-ccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKL-EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l-~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
|+++.+.|..|-.. ++|+.|+.+|++|.++--.+. -......|-.++..
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 57889999999998 999999999999999733222 33444444444443
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=30.69 E-value=47 Score=28.42 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=27.9
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
++++=|+||++-.-++.+.|++-|.++..+.|..+
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra 77 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERA 77 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch
Confidence 35667888888888888888888888888887644
No 228
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=30.51 E-value=93 Score=30.29 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=34.7
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021892 6 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 49 (306)
Q Consensus 6 ~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l 49 (306)
++.+..+...++|+.|+..+++..+.+|+++..-.++..+-...
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 35577888889999999999999999998887777776665444
No 229
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=30.19 E-value=1.1e+02 Score=22.77 Aligned_cols=29 Identities=10% Similarity=-0.138 Sum_probs=21.9
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
-.++++|+.+=+.++|++|+..|..|.++
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34677888888888888888877776653
No 230
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=29.72 E-value=37 Score=26.77 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=25.8
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
+|+.++..++-....++|+.|...|+.|.+
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 368889999999999999999999999874
No 231
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=29.55 E-value=40 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=22.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
|..++++++-+=..++|++|+..|..|.++
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345778888888888998888887777653
No 232
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=29.01 E-value=37 Score=32.84 Aligned_cols=30 Identities=27% Similarity=0.202 Sum_probs=26.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
|.||||.|+++...++|-+|...|+.|..+
T Consensus 244 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~ 273 (348)
T cd09242 244 SLAAYYHALALEAAGKYGEAIAYLTQAESI 273 (348)
T ss_pred HHHHHHHHHHhHHhccHHHHHHHHHHHHHH
Confidence 678999999999999999999988887653
No 233
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.66 E-value=41 Score=35.55 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=23.0
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
|.||=-.|+.||+.|..+.|...|++|.+++|.
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~ 318 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPN 318 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCC
Confidence 445555667777777777777777777777765
No 234
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.65 E-value=33 Score=32.08 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=28.4
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
++|+||=.|.++...+.|..|...|++|.++
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3689999999999999999999999999665
No 235
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.12 E-value=1.2e+02 Score=28.49 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=37.9
Q ss_pred hhhhhhhhhccccHHHHHHHHHHhhccCCC--CchHHHHHHHHHHHHHhh
Q 021892 5 YWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKECEERIAEE 52 (306)
Q Consensus 5 ~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~--d~~~~~wi~k~~~~l~~~ 52 (306)
+|+.|+|++...+--.|..+|++.++++|. |++=-+.+..+-..|+++
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~ 247 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQ 247 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhh
Confidence 688999999999999999999999999995 666555555555555544
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=1.2e+02 Score=28.93 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=37.1
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 47 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~ 47 (306)
..|.|-.|.++|..++|.+|...++.-..+.|.|..-..-|++.-.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 4578889999999999999999999999999877665544444433
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=27.75 E-value=26 Score=35.20 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.3
Q ss_pred EEEEEE
Q 021892 117 VVVTVF 122 (306)
Q Consensus 117 V~ItI~ 122 (306)
|.++|.
T Consensus 457 ~s~sv~ 462 (639)
T KOG1130|consen 457 VSASVL 462 (639)
T ss_pred cccccc
Confidence 334433
No 238
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=27.58 E-value=51 Score=26.19 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=26.6
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
+|+.++-.++-+...++|+.|...|+.|.+
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367888899999999999999999999874
No 239
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=27.43 E-value=93 Score=32.29 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=38.9
Q ss_pred hhhhhhhhhhhh-ccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 2 SKAYWRKATACM-KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~-~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
|+++||.|..|+ +-.+++.|..+|++|..+... ..+....=.|+..|..
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~ 108 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLAR 108 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHH
Confidence 678999999999 899999999999999888766 5566555555555443
No 240
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=27.32 E-value=47 Score=33.10 Aligned_cols=30 Identities=10% Similarity=-0.218 Sum_probs=28.0
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
|.||||.|+.+..-++|-+|...|+.|...
T Consensus 296 A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~ 325 (413)
T cd09245 296 ALACKFLGIDAGENGKVGEAIGWLRAAKKE 325 (413)
T ss_pred HHHHHHHHHhhHhcCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999884
No 241
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=27.24 E-value=45 Score=31.75 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=26.5
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
|.|||+.|.++...++|.+|...|+.|..+
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 679999999999999999999999887654
No 242
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=26.93 E-value=57 Score=33.44 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
+.+|.-+|+.+...+++++|..+|++|..++|+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS 452 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 356788899999999999999999999999984
No 243
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=26.72 E-value=1.1e+02 Score=29.75 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.4
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
|.||||.|.++...++|-+|...|+.|..
T Consensus 247 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~ 275 (353)
T cd09246 247 AEALYRAAKDLHEKEDIGEEIARLRAASD 275 (353)
T ss_pred HHHHHHHHHHhHHhcchHHHHHHHHHHHH
Confidence 67899999999999999999999998865
No 244
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=26.61 E-value=54 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=26.5
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
+|+.++-.++-+...++|+.|...|+.|.+
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367888899999999999999999999874
No 245
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=26.38 E-value=60 Score=26.23 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=26.4
Q ss_pred ChhhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021892 1 MSKAYWRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 1 ~aka~~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
+|+..+..++.+.+.++|++|...++.|.+
T Consensus 18 ~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~ 47 (105)
T COG1447 18 NARSKAYEALKAAKEGDFEEAEELIQEAND 47 (105)
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578889999999999999999999988763
No 246
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=25.99 E-value=1e+02 Score=29.99 Aligned_cols=29 Identities=7% Similarity=-0.059 Sum_probs=25.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
|.||||.|.++...++|.+|...|+.|..
T Consensus 252 A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 252 SIAHLHMGKQSEEQQKMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999888877765
No 247
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.73 E-value=41 Score=35.60 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=26.4
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
.||--.|+|+-.+|+-.+|..+|.+|..|.|+.+
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 4666677888888888888888888888888754
No 248
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=24.72 E-value=63 Score=23.89 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=16.5
Q ss_pred HHHHHHHHHHh-CCCCHHHHHHH
Q 021892 246 AALNKFFQEIY-ADADEDTRRAM 267 (306)
Q Consensus 246 a~l~~~fq~iY-~~adddtkRAM 267 (306)
|-|-+|+++|| ...+||+||.+
T Consensus 53 avlvkmlrkly~~tk~e~vkrml 75 (79)
T PF09061_consen 53 AVLVKMLRKLYEATKNEEVKRML 75 (79)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 56899999999 56788888854
No 249
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.2e+02 Score=31.01 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=38.4
Q ss_pred hhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhh
Q 021892 8 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 52 (306)
Q Consensus 8 ~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~~ 52 (306)
.|.||-.|++-++|..+|++|..++-.+...--.+.++.++|...
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 588999999999999999999999887777777888888877664
No 250
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.32 E-value=97 Score=32.23 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=36.3
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
.+|==.|.+|..+|+++.|..+|-+|..+.|++..+..-+..+
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3455568899999999999999999999999998777776654
No 251
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.84 E-value=88 Score=24.68 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhh
Q 021892 246 AALNKFFQEIYADADEDTRRAMKKSF 271 (306)
Q Consensus 246 a~l~~~fq~iY~~adddtkRAM~KSf 271 (306)
..+..+|...|..+|+++|..|.+=+
T Consensus 78 ~~~~~~f~~~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 78 EFLVPLFLDAYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45688999999999999999998844
No 252
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=23.71 E-value=76 Score=29.48 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 43 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~ 43 (306)
|+-||-||+-|=.+|-...|+-+|..+..+.|+-+.+-..+-
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG 106 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 106 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHH
Confidence 567999999999999999999999999999998777655543
No 253
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.27 E-value=77 Score=25.09 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=26.5
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLA 32 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~ 32 (306)
...+..|+.-+..++|..|...+.++.++.
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~ 89 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLS 89 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 356789999999999999999999998774
No 254
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=22.89 E-value=57 Score=36.18 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=36.3
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 45 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~ 45 (306)
+-+|+-.|+.|...++++-|..+|.++++++|.+ +..|+-+.
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n--l~~WlG~A 891 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN--LVQWLGEA 891 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCchh--hHHHHHHH
Confidence 3468889999999999999999999999999975 67777654
No 255
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.83 E-value=75 Score=21.37 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.6
Q ss_pred hhhhhhhhccccHHHHHHHHHHhhc
Q 021892 6 WRKATACMKLEEYETAKVALEKGAS 30 (306)
Q Consensus 6 ~R~Gia~~~l~~y~~A~~~l~~a~~ 30 (306)
|=...+|+.+++++.|+..|+....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4467789999999999999998884
No 256
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=62 Score=32.66 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=38.0
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 51 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l~~ 51 (306)
..||+-+|.++.++++-++|..+|..|+-|.|.+ +..+.--.+..|+.
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r--L~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYR--LEIYRGLFHSYLAQ 381 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhh--HHHHHHHHHHHHhh
Confidence 3589999999999999999999999999999864 44444444445544
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=22.15 E-value=84 Score=26.68 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=29.2
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCC
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPG 34 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~ 34 (306)
+..+|+.|...+..++|.+|...|+.-...-|-
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~ 42 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF 42 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 357899999999999999999999998887664
No 258
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=22.13 E-value=60 Score=31.25 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL 31 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~ 31 (306)
|.|||+.|.++...++|..|...|+.|..+
T Consensus 239 A~A~y~~A~~~~~~~~~G~aia~L~~A~~~ 268 (377)
T PF03097_consen 239 ALAHYHQALAAEEAKKYGEAIARLRRAEEA 268 (377)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 679999999999999999988888877654
No 259
>PRK14574 hmsH outer membrane protein; Provisional
Probab=22.04 E-value=1e+02 Score=33.58 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=30.8
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCCc
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 36 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~ 36 (306)
...|=.+|..|..|+|..|+..|+++.+.+|..+
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~ 68 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS 68 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch
Confidence 4567789999999999999999999999999984
No 260
>PRK14574 hmsH outer membrane protein; Provisional
Probab=21.94 E-value=1.1e+02 Score=33.45 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=30.1
Q ss_pred hhhhh--hhhhhccccHHHHHHHHHHhhccCCCCchHHHHH
Q 021892 4 AYWRK--ATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 42 (306)
Q Consensus 4 a~~R~--Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi 42 (306)
++.++ |.+|..+++|..|...|+++.+++|+++.+-.-+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34455 5588888999999999999999999887665543
No 261
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=21.51 E-value=58 Score=31.44 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhcc-C---C-CC----chHHHHHHHHHHHHHhh
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASL-A---P-GD----SRFTNLIKECEERIAEE 52 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~-~---~-~d----~~~~~wi~k~~~~l~~~ 52 (306)
|.||||.|+.+..-++|.+|...|+.|... . . .+ ..+......++..++..
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~a 312 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLPGSDISSPVIFRDERAEVATLLQKY 312 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999988773 1 1 11 13444566666666654
No 262
>PRK03641 hypothetical protein; Provisional
Probab=21.25 E-value=84 Score=28.44 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHH
Q 021892 244 GDAALNKFFQEIYADADEDTRRAMKK 269 (306)
Q Consensus 244 g~a~l~~~fq~iY~~adddtkRAM~K 269 (306)
++.....|+|-.|..||++||++.++
T Consensus 187 ~~~~~~~mL~~Wy~qAd~etrk~F~~ 212 (220)
T PRK03641 187 SQNLTEQRLKYWFKQADPQTRNRFLQ 212 (220)
T ss_pred ccchHHHHHHHHHHhcCHHHHHHHHH
Confidence 33445678999999999999998765
No 263
>PF13041 PPR_2: PPR repeat family
Probab=21.16 E-value=1.4e+02 Score=19.50 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.3
Q ss_pred hhhhccccHHHHHHHHHHhhccC--CCCchHHHHHH
Q 021892 10 TACMKLEEYETAKVALEKGASLA--PGDSRFTNLIK 43 (306)
Q Consensus 10 ia~~~l~~y~~A~~~l~~a~~~~--~~d~~~~~wi~ 43 (306)
-+|...+++++|...|+.-.+.+ |+.-++...|.
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 36788899999999999988765 55555555544
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=20.83 E-value=91 Score=24.57 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=25.4
Q ss_pred hhhhhhhhhhhccccHHHHHHHHHHhhccCCCC
Q 021892 3 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 35 (306)
Q Consensus 3 ka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d 35 (306)
.++++.|.++..++.|..|...+..+....+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDP 128 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence 467777888888888888888888888777665
No 265
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.83 E-value=93 Score=30.47 Aligned_cols=47 Identities=21% Similarity=0.137 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhhccccHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 021892 2 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 49 (306)
Q Consensus 2 aka~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~d~~~~~wi~k~~~~l 49 (306)
++-|-=||.|.-.|++++.|..+|..+.+++++ .....|+..++-..
T Consensus 182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a 228 (377)
T KOG1308|consen 182 AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNA 228 (377)
T ss_pred ccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccch
Confidence 345666788899999999999999999998885 45677776665433
No 266
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=2.4e+02 Score=25.01 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=34.6
Q ss_pred CCCCCeee--ecCCCeEEEEEEecCCCCCccEEEeeccE-EEEEE
Q 021892 103 RPKYRHEF--YQKPEEVVVTVFAKGIPAKNVTVDFGEQI-LSVSI 144 (306)
Q Consensus 103 ~~k~r~dW--yQt~~~V~ItI~~k~v~~e~v~V~f~~~~-l~v~i 144 (306)
....+..| ..+.+...+.+-++|+..++++|++.+.. |.|+.
T Consensus 80 ~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isG 124 (196)
T KOG0710|consen 80 KSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISG 124 (196)
T ss_pred cccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEec
Confidence 34567788 78899888999999999999999999874 76664
No 267
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.08 E-value=92 Score=30.61 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=29.0
Q ss_pred hhhhhhhhhccccHHHHHHHHHHhhccCCC-CchHHHHH
Q 021892 5 YWRKATACMKLEEYETAKVALEKGASLAPG-DSRFTNLI 42 (306)
Q Consensus 5 ~~R~Gia~~~l~~y~~A~~~l~~a~~~~~~-d~~~~~wi 42 (306)
|.-.|+||+.-+.|+.++.+|++|++..-+ +..-..|-
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY 399 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY 399 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh
Confidence 445689999999999999999999988763 34455564
Done!