BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021893
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 191/276 (69%), Gaps = 6/276 (2%)
Query: 2 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 61
+A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+ ++ +
Sbjct: 167 KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP--NV 224
Query: 62 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 121
A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VR
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 284
Query: 122 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 181
PD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA+L+V+ +E
Sbjct: 285 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEEN 344
Query: 182 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 241
LAE + LG LR L K+ + V VRG+GL NA+ +T A+ +CL++++
Sbjct: 345 LAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDN 400
Query: 242 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 401 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 191/276 (69%), Gaps = 6/276 (2%)
Query: 2 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 61
+A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+ ++ +
Sbjct: 167 KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP--NV 224
Query: 62 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 121
A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VR
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 284
Query: 122 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 181
PD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA+L+V+ +E
Sbjct: 285 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEEN 344
Query: 182 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 241
LAE + LG LR L K+ + V VRG+GL NA+ +T A+ +CL++++
Sbjct: 345 LAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDN 400
Query: 242 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 401 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 191/276 (69%), Gaps = 6/276 (2%)
Query: 2 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 61
+A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+ ++ +
Sbjct: 130 KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP--NV 187
Query: 62 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 121
A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VR
Sbjct: 188 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 247
Query: 122 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 181
PD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA+L+V+ +E
Sbjct: 248 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEEN 307
Query: 182 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 241
LAE + LG LR L K+ + V VRG+GL NA+ +T A+ +CL++++
Sbjct: 308 LAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDN 363
Query: 242 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 364 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/276 (49%), Positives = 190/276 (68%), Gaps = 6/276 (2%)
Query: 2 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 61
+A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+ ++ +
Sbjct: 167 KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP--NV 224
Query: 62 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 121
A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VR
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 284
Query: 122 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 181
PD+V+LGKAL GG+ PVSAVL D ++ML I+PGEH ST+GGNPL VAIA+L+V+ +E
Sbjct: 285 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEEN 344
Query: 182 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 241
LAE + LG LR L K+ + V VRG+GL NA+ +T A+ +CL++++
Sbjct: 345 LAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDN 400
Query: 242 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 401 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/276 (47%), Positives = 184/276 (66%), Gaps = 11/276 (3%)
Query: 2 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 61
+A I+ C FHGRT+ A+SMS + E RGFGP+LPG + + +GD+ AL+ +
Sbjct: 127 RAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN---T 183
Query: 62 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 121
A F+ EPIQGEAG+ IPP G+LK ++C K N+L +ADEIQ+GL R+G++ A DW+ V
Sbjct: 184 AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVT 243
Query: 122 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 181
PDM ILG ALGGGV P+S A+++++ +PG HGSTFGGNPLA AV+IA+L+V+ +EK
Sbjct: 244 PDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEK 303
Query: 182 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 241
L ERS LGE+L L +I + EVRG+GLF +E ++ A P C ++K
Sbjct: 304 LTERSLQLGEKLVGQLKEIDNPM---ITEVRGKGLFIGIELNEPARPY-----CEQLKAA 355
Query: 242 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
G+L K TH+ ++R+ PPL IS +L+ + + VL
Sbjct: 356 GLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 180/271 (66%), Gaps = 5/271 (1%)
Query: 3 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA 62
A I+ C F GRTL +S S D + FGP +P LKV + D+ ALEK ++ +
Sbjct: 138 AKIIVCNNNFSGRTLGCVSASTDKKCKNNFGPFVPNFLKVPYDDLEALEKELQDP--NVC 195
Query: 63 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 122
F+ EP+QGEAGVI+P D Y V LC KYN+L +ADE+Q+GL R+G++L + V+P
Sbjct: 196 AFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHYGVKP 255
Query: 123 DMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 182
D+++LGKAL GG P+SA+LA+ +VML ++PGEHGST+GGNPLA+A+ + +L V+ +EKL
Sbjct: 256 DVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLINEKL 315
Query: 183 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG 242
E + LG Q+L K Q + V+EVRG+GL A+EF V+ +DICLK KE G
Sbjct: 316 CENADKLGAPFLQNL-KEQLKDSKVVREVRGKGLLCAIEFKNDL--VNVWDICLKFKENG 372
Query: 243 ILAKPTHDTIVRLTPPLSISSNELQEGSKAL 273
++ + HD VRLTPPL I+ +L E ++ +
Sbjct: 373 LITRSVHDKTVRLTPPLCITKEQLDECTEII 403
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 182/271 (67%), Gaps = 5/271 (1%)
Query: 3 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA 62
A IV C F GRTL IS S + FGP P KV + D+ ALE+ K+ +
Sbjct: 157 AKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDP--NVC 214
Query: 63 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 122
F+ EPIQGEAGVI+P D YL+ V D+C KYN+L +ADE+Q+GL R+G++L V+P
Sbjct: 215 AFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKP 274
Query: 123 DMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 182
D+++LGKAL GG P+SAVLA+ ++ML I+PGEHGST+GGNPLA+++ + +L+V+ +EKL
Sbjct: 275 DVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKL 334
Query: 183 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG 242
E + LG ++L K + + V++VRG+GL A+EF K L V+ DICLK+KE G
Sbjct: 335 CENAEKLGGPFLENL-KRELKDSKIVRDVRGKGLLCAIEF-KNEL-VNVLDICLKLKENG 391
Query: 243 ILAKPTHDTIVRLTPPLSISSNELQEGSKAL 273
++ + HD +RLTPPL I+ +L E ++ +
Sbjct: 392 LITRDVHDKTIRLTPPLCITKEQLDECTEII 422
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 153/274 (55%), Gaps = 9/274 (3%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 64
I+S FHGRTL +++ + + + F PL+PG +F ++ L + K S D A F
Sbjct: 119 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR--KMSEDVCAVF 176
Query: 65 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 124
L EPIQGE+G++ +L+ R LC +Y+ L++ DE+Q G+ R+G++ A V PD+
Sbjct: 177 L-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDV 235
Query: 125 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 184
+ K LGGGV P+ AV+ ++ + ++PG+HG+TFGGNPLA + + + E E
Sbjct: 236 LTTAKGLGGGV-PIGAVIVNERANV-LEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLE 293
Query: 185 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 244
G L + L ++++++ + V +VRG GL ++F + VS ++ K E +L
Sbjct: 294 EVEEKGNYLMKKLQEMKEEY-DVVADVRGMGLMIGIQFRE---EVSNREVATKCFENKLL 349
Query: 245 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
P + +R PPL++ E+ + L VL+
Sbjct: 350 VVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 383
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 151/274 (55%), Gaps = 9/274 (3%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 64
I+S FHGRTL +++ + + + F PL+PG +F ++ L + K S D A F
Sbjct: 131 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR--KXSEDVCAVF 188
Query: 65 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 124
L EPIQGE+G++ +L+ R LC +Y+ L++ DE+Q G R+G++ A V PD+
Sbjct: 189 L-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDV 247
Query: 125 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 184
+ K LGGGV P+ AV+ ++ + ++PG+HG+TFGGNPLA + + + E E
Sbjct: 248 LTTAKGLGGGV-PIGAVIVNERANV-LEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLE 305
Query: 185 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 244
G L + L + ++++ + V +VRG GL ++F + VS ++ K E +L
Sbjct: 306 EVEEKGNYLXKKLQEXKEEY-DVVADVRGXGLXIGIQFRE---EVSNREVATKCFENKLL 361
Query: 245 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
P + +R PPL++ E+ + L VL+
Sbjct: 362 VVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 143/278 (51%), Gaps = 27/278 (9%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 64
+S FHGRT ++S + + +GF PL+PG DI ++ K+ E + AG
Sbjct: 120 FISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDE---ETAGI 176
Query: 65 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 124
+ E IQGE GV + +L ++++C + ++L+I DE+Q+G+ R+G A ++PD+
Sbjct: 177 IIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDV 236
Query: 125 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 184
+ L K LGGGV P+ A+LA +EV PG HGSTFGGNPLA +D +
Sbjct: 237 IALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV------- 288
Query: 185 RSAHLGEELRQHLFKIQQQFPNYVKE-----VRGRGLFNAVEFDKTALPVSAYDICLKMK 239
E+L H+ ++ F +KE V+GRGL +E ++ D LK
Sbjct: 289 ------EKLLPHVREVGNYFKEKLKELGKGKVKGRGLMLGLELER-----ECKDYVLKAL 337
Query: 240 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
E+G+L T ++R PPL I + L ++L
Sbjct: 338 EKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 6/265 (2%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 64
I++ FHGR+L +S+ + GFGP + V F D+ A++ + D
Sbjct: 149 IIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMD---DHTCAV 205
Query: 65 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 124
+ EPIQGE GV +LK +RDLC ++ L++ DE+Q G+ R+G + A V PD+
Sbjct: 206 VVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDI 265
Query: 125 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 184
+ KALGGG PVSA+L +E+ G HGST+GGNPLA AVA A+ D+I ++ +
Sbjct: 266 LTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQ 324
Query: 185 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 244
++ QHL I +QF + ++RG GL E K A D E G++
Sbjct: 325 GIHTKRQQFVQHLQAIDEQF-DIFSDIRGMGLLIGAEL-KPKYKGRARDFLYAGAEAGVM 382
Query: 245 AKPTHDTIVRLTPPLSISSNELQEG 269
++R P L + ++ EG
Sbjct: 383 VLNAGADVMRFAPSLVVEEADIHEG 407
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 153/300 (51%), Gaps = 29/300 (9%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLP----GHLKVDFGDIT----------- 48
+V+ +HGRT ++++ + GFGP P L F D
Sbjct: 151 VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGEL 210
Query: 49 ----ALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 103
A+ I K+ G D +A + EPIQGE G I+P DG+L + D C K +++ IADE+Q
Sbjct: 211 AAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQ 270
Query: 104 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 163
+G AR+G M A + E + PD+++ + GG +P+SAV E+M G T+GGN
Sbjct: 271 TGFARTGAMFACEHEGIDPDLIVTAXGIAGG-LPLSAVTGRAEIMDSPHVSGLGGTYGGN 329
Query: 164 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 223
P+A A A+A+++ I E L R+ + + ++ L ++Q + + + +VRGRG A+E
Sbjct: 330 PIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAE-DDRIGDVRGRGAMIAMELV 388
Query: 224 KTALPVSAYD----ICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
K D +C G +L+ T+ +VR PPLSI + L EG L +VL
Sbjct: 389 KAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 153/304 (50%), Gaps = 47/304 (15%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGF-GPLLPGHLKVDFGD-------ITALEK---- 52
I++ G FHGRT +IS++ R GP +PG + V + + I E
Sbjct: 132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL 191
Query: 53 -----------IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 99
IF +++AG FEPIQGE G +IPP + ++ L KY IL++
Sbjct: 192 VNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVD 251
Query: 100 DEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST 159
DE+Q GL R+G++ A + PD++ L KALGGG++P+ A + K+ L +PG H +T
Sbjct: 252 DEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKD--LDFKPGMHSNT 309
Query: 160 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK----EVRGRG 215
FGGN LA A+ +D+++D L H+ +I + F ++ +VRG G
Sbjct: 310 FGGNALACAIGSKVIDIVKD-------------LLPHVNEIGKIFAEELQGLADDVRGIG 356
Query: 216 LFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 275
L +E+++ + K RG+L P + +R+ PPL IS E ++G L
Sbjct: 357 LAWGLEYNEKKVRDRIIGESFK---RGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKK 413
Query: 276 VLEL 279
V+++
Sbjct: 414 VIKV 417
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 142/267 (53%), Gaps = 7/267 (2%)
Query: 12 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQG 71
FHGRTL A+S++ + + + F PL+ G + DI+++EK+ E + + E +QG
Sbjct: 134 FHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNE---KTCAIILESVQG 190
Query: 72 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKAL 131
E G+ + KA+R LC + +IL+IADEIQ G RSG+ A + ++ PD+ KAL
Sbjct: 191 EGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILPDIXTSAKAL 250
Query: 132 GGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGE 191
G G+ + V+ K ++ G+HGST+GGNPL A A ++ ++EK+ E L
Sbjct: 251 GCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTP 310
Query: 192 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDT 251
L Q L ++ +F ++ K+ +G G + DK+ V + K +E +L +
Sbjct: 311 YLEQSLDELINEF-DFCKKRKGLGFXQGLSLDKS---VKVAKVIQKCQENALLLISCGEN 366
Query: 252 IVRLTPPLSISSNELQEGSKALHDVLE 278
+R PPL + + E S+ L L+
Sbjct: 367 DLRFLPPLILQKEHIDEXSEKLRKALK 393
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 146/273 (53%), Gaps = 11/273 (4%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 64
V+ F GRT+ ++S++ + + F PL+ + + D+ AL++ E + A
Sbjct: 133 FVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE---ETAAV 189
Query: 65 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 124
+ EP+QGE GV +L+A R++ + L+I DEIQ+G+ R+G+ A + + PD+
Sbjct: 190 ILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDI 249
Query: 125 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 184
+ L KALGGGV P+ + +EV + G HG+TFGGNPLA A +A++ + +L E
Sbjct: 250 LTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE 308
Query: 185 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 244
R+A LG + L I ++EVRG GL +E + A P I KE +L
Sbjct: 309 RAAELGPWFMEKLRAIPSP---KIREVRGMGLMVGLELKEKAAPY----IARLEKEHRVL 361
Query: 245 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
A T++R PPL I +L+ +A+ VL
Sbjct: 362 ALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 132/265 (49%), Gaps = 6/265 (2%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 64
IV+ FHGRTL +S + F PL + DI + + D
Sbjct: 131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALID---DSTCAV 187
Query: 65 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 124
+ EPIQGE GV+ + +L+ +R+LC+++N L+I DE+Q+G+ R+G + A V PD+
Sbjct: 188 IVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247
Query: 125 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 184
+ KALGGG PV A+LA +E + G HG+T+GGNPLASAVA L++I ++
Sbjct: 248 LTTAKALGGG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLN 306
Query: 185 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 244
+ + L I ++ EVRG GL + A I + + G++
Sbjct: 307 GVKQRHDWFVERLNTINHRY-GLFSEVRGLGLLIGCVLNAD-YAGQAKQISQEAAKAGVM 364
Query: 245 AKPTHDTIVRLTPPLSISSNELQEG 269
+VR P L++S E+ G
Sbjct: 365 VLIAGGNVVRFAPALNVSEEEVTTG 389
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 39/305 (12%)
Query: 12 FHGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVDFGD--------ITALEKIFK 55
+HG T+ A+S+ +GPL+ P + + GD + L ++ +
Sbjct: 146 YHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLE 205
Query: 56 ESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 114
E ++IA E +QG +G+I+ P+GYL VR+LC+ Y++LMI DE+ +G R+G+M A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 115 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLAS 167
+ E V+PD++ GK + GG +P++ A +++ ++ HG ++ GN L
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 168 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DK 224
AVA+ +L + E + E+ A ++L L + P +V ++R G E +
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKL-HFLLQDLHALP-HVGDIRQLGFMCGAELVRSKE 383
Query: 225 TALPVSA-----YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE----GSKALHD 275
T P A Y + LKM+E G+L +P D I L PPL+ ++ EL E +A+H+
Sbjct: 384 TKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFL-PPLASTAEELSEMVAIMKQAIHE 442
Query: 276 VLELD 280
V L+
Sbjct: 443 VTSLE 447
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 39/305 (12%)
Query: 12 FHGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVDFGD--------ITALEKIFK 55
+HG T+ A+S+ +GPL+ P + + GD + L ++ +
Sbjct: 146 YHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRELAQLLE 205
Query: 56 ESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 114
E ++IA E +QG +G+I+ P+GYL VR+LC+ Y++LMI DE+ +G R+G+M A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 115 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLAS 167
+ E V+PD++ GK + GG +P++ A +++ ++ HG ++ GN L
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 168 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DK 224
AVA+ +L + E + E+ A ++L L + P +V ++R G E +
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKL-HFLLQDLHALP-HVGDIRQLGFMCGAELVRSKE 383
Query: 225 TALPVSA-----YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE----GSKALHD 275
T P A Y + LKM+E G+L +P D I L PPL+ ++ EL E +A+H+
Sbjct: 384 TKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFL-PPLASTAEELSEMVAIMKQAIHE 442
Query: 276 VLELD 280
V L+
Sbjct: 443 VTSLE 447
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 151/297 (50%), Gaps = 24/297 (8%)
Query: 2 QAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPL------LPGHLKVDFGDI------- 47
QA++V +HGRT ++M+ N+ + GFGP +P G+
Sbjct: 156 QAVVV-FDHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPTSYPFRDGETDGAAAAA 214
Query: 48 TALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 106
AL+ I K+ G D +A + EP+ GE G ++P G+L A++ C+ + +ADE+Q+G
Sbjct: 215 HALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGF 274
Query: 107 ARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLA 166
AR+G + A + E V PD+++ K + GG +P+SAV E+M Q G G T+GGNPLA
Sbjct: 275 ARTGALFACEHENVVPDLIVTAKGIAGG-LPLSAVTGRAEIMDGPQSGGLGGTYGGNPLA 333
Query: 167 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 226
A A+A +D I E L R+ +GE + L + P + EVRGRG AVE K
Sbjct: 334 CAAALAVIDTIERENLVARARAIGETMLSRLGALAAADPR-IGEVRGRGAMIAVELVKPG 392
Query: 227 LPVSAYDICLKMKERG------ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
D+ ++ +L T+ ++R PPLS+ + L EG L V
Sbjct: 393 TTEPDADLTKRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDILAAVF 449
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 147/300 (49%), Gaps = 29/300 (9%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFG----------DIT----- 48
+V+ +HGRT ++++ + + GFGP P + DI
Sbjct: 168 VVAFDYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGEL 227
Query: 49 ----ALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 103
A+ I K+ G +A + EPI GE G I+P DG+L A++ C +++ IADE+Q
Sbjct: 228 AAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQ 287
Query: 104 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 163
+G AR+G M A D E V PD+++ + G P+SAV E+M G TFGGN
Sbjct: 288 TGFARTGAMFACDHENVEPDLIVTAXGIADG-FPLSAVTGRAEIMDAPHTSGLGGTFGGN 346
Query: 164 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 223
P+A A A+A+++ I + + ER+ + + L ++Q + + +VRGRG A+E
Sbjct: 347 PVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAA-DDRLGDVRGRGAMIAMELV 405
Query: 224 K--TALPVSAYDICLKMKERG----ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
K TA P +A L +L ++RL PPL+IS L EG L +L
Sbjct: 406 KSGTAEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDILCQIL 465
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 151/286 (52%), Gaps = 26/286 (9%)
Query: 6 VSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLK-----------VDFGDITALEKI 53
++ G +HGRT ++++ N G G L+PGH+ + I ++ +I
Sbjct: 132 IAFSGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRI 190
Query: 54 FKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 111
FK + IA + EP+QGE G +++ +R LC ++ I++IADE+QSG R+G
Sbjct: 191 FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT 250
Query: 112 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 171
+ A + V PD+ K++ GG P++ V EVM + PG G T+ GNP+A A+
Sbjct: 251 LFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAAL 309
Query: 172 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------DKT 225
L V E L +++ LG++L+ L I ++ P + +VRG G A+E +K
Sbjct: 310 EVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKP 368
Query: 226 ALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 269
++A +I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 369 DAKLTA-EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 151/286 (52%), Gaps = 26/286 (9%)
Query: 6 VSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLK-----------VDFGDITALEKI 53
++ G +HGRT ++++ N G G L+PGH+ + I ++ +I
Sbjct: 132 IAFSGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRI 190
Query: 54 FKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 111
FK + IA + EP+QGE G +++ +R LC ++ I++IADE+QSG R+G
Sbjct: 191 FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT 250
Query: 112 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 171
+ A + V PD+ K++ GG P++ V EVM + PG G T+ GNP+A A+
Sbjct: 251 LFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAAL 309
Query: 172 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------DKT 225
L V E L +++ LG++L+ L I ++ P + +VRG G A+E +K
Sbjct: 310 EVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKP 368
Query: 226 ALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 269
++A +I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 369 DAKLTA-EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 150/286 (52%), Gaps = 26/286 (9%)
Query: 6 VSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLK-----------VDFGDITALEKI 53
++ G +HGRT ++++ N G G L+PGH+ + I ++ +I
Sbjct: 132 IAFSGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRI 190
Query: 54 FKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 111
FK + IA + EP+QGE G +++ +R LC ++ I++IADE QSG R+G
Sbjct: 191 FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGT 250
Query: 112 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 171
+ A + V PD+ K++ GG P++ V EVM + PG G T+ GNP+A A+
Sbjct: 251 LFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAAL 309
Query: 172 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------DKT 225
L V E L +++ LG++L+ L I ++ P + +VRG G A+E +K
Sbjct: 310 EVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKP 368
Query: 226 ALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 269
++A +I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 369 DAKLTA-EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 130 bits (327), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 150/286 (52%), Gaps = 26/286 (9%)
Query: 6 VSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLK-----------VDFGDITALEKI 53
++ G +HGRT ++++ N G G L+PGH+ + I ++ +I
Sbjct: 132 IAFSGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRI 190
Query: 54 FKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 111
FK + IA + EP+QG G +++ +R LC ++ I++IADE+QSG R+G
Sbjct: 191 FKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT 250
Query: 112 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 171
+ A + V PD+ K++ GG P++ V EVM + PG G T+ GNP+A A+
Sbjct: 251 LFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAAL 309
Query: 172 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------DKT 225
L V E L +++ LG++L+ L I ++ P + +VRG G A+E +K
Sbjct: 310 EVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKP 368
Query: 226 ALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 269
++A +I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 369 DAKLTA-EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 154/295 (52%), Gaps = 24/295 (8%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLLPGHLKV-------DFGDIT-------A 49
+V+ +HGRT ++++ + + FGP P ++ D +T A
Sbjct: 154 VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRA 213
Query: 50 LEKIFKESGDQ-IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 108
+ +I + G Q +A + EPIQGE G I+P G+L + S+ ++ IADE+Q+G AR
Sbjct: 214 ISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFAR 273
Query: 109 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 168
+G AS+ E + PD+V + + GG +P+SAV E+M + G G T+GGNP+ A
Sbjct: 274 TGAWFASEHEGIVPDIVTMAXGIAGG-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCA 332
Query: 169 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK--TA 226
A+A+L V+R+ L R+ + + L + ++ + + EVRGRG A+E K T
Sbjct: 333 AAVAALGVMRELDLPARARAIEASVTSRLSALAEEV-DIIGEVRGRGAMLAIEIVKPGTL 391
Query: 227 LPVSAY--DICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
P +A I + +G IL T ++RL PPL I + L EG AL D++
Sbjct: 392 EPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDII 446
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 152/299 (50%), Gaps = 34/299 (11%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFG------------------ 45
+V+ +HGRT ++++ + FGP P ++
Sbjct: 154 VVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKR 213
Query: 46 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 105
IT +EK + GDQ+A + EPIQGE G I+P +G+L A+ + + I+ IADE+QSG
Sbjct: 214 AITMIEK--QIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSG 271
Query: 106 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL 165
R+G A D E V PD++ + K + GG +P+SA+ +++ + PG G T+GGNP+
Sbjct: 272 FCRTGEWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVHPGGLGGTYGGNPV 330
Query: 166 ASAVAIASLDVIRDEKLAERSAHLGE----ELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 221
A A A+A++D + L R+ H+ E +LR+ ++ + V ++RGRG A+E
Sbjct: 331 ACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIE 390
Query: 222 FDK-------TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 273
+ L + CLK + IL T+ ++RL PPL IS L +G + L
Sbjct: 391 LVQPGSKEPNAELTKAVAAACLK-EGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVL 448
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 132/255 (51%), Gaps = 29/255 (11%)
Query: 37 PGHLKVDFGDITALEKIFK----ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 92
PG + + D+ ++++ + E + IA F+ EPI G++ P Y KAV + C K
Sbjct: 188 PGIERENIYDVECVKEVDRVXTWELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQK 247
Query: 93 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ 152
+ L+I+DE+ G R+G+ +V+PD++ K + +P+SA +E+ +
Sbjct: 248 HGALLISDEVICGFGRTGKAFGFXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFK 307
Query: 153 -PGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPN 206
GE H +TFGGNP A A+A+ +L++I +E L ERSA G L + L + + P
Sbjct: 308 GKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHP- 366
Query: 207 YVKEVRGRGLFNAVEF---DKTALPV------SAYDICLKMKERGIL------AKPTHDT 251
V ++RG+GL +E +T P+ S + C KE+G++ ++
Sbjct: 367 LVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC---KEKGLIIGRNGXTTAGYNN 423
Query: 252 IVRLTPPLSISSNEL 266
I+ L PPL ISS E+
Sbjct: 424 ILTLAPPLVISSEEI 438
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 123/249 (49%), Gaps = 22/249 (8%)
Query: 51 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 110
E I +E D IAGF EP+ G GVI P GY +A+ + KY+I +I+DE+ G R+G
Sbjct: 221 ETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG 280
Query: 111 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-------MLCIQPGEHGSTFGGN 163
+ PD +I K L G P+ AV+ E+ + I+ HG T G+
Sbjct: 281 NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGH 340
Query: 164 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 223
P+ A+A+ ++DV+ +E LAE L + L I ++ PN + E RG G A+E
Sbjct: 341 PVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER-PN-IGEYRGIGFMWALEAV 398
Query: 224 KTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 275
K + +D L + ER G++ +P ++V L PP ++ ++ E + D
Sbjct: 399 KDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQMDE----MFD 453
Query: 276 VLELDLPKM 284
LE L K+
Sbjct: 454 KLEKALDKV 462
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 141/285 (49%), Gaps = 24/285 (8%)
Query: 12 FHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFKESGD 59
+HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 144 YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 60 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 173
E+ PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L ++ ++ A + +LR+ L + V +VR G VE T PV+
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAA 378
Query: 234 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
+ E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 21/245 (8%)
Query: 49 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 108
A + I ++S +A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R
Sbjct: 191 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGR 250
Query: 109 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGG 162
+G M A + V PD++ L K LG G +P++A++ I+ H +T
Sbjct: 251 TGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVS 305
Query: 163 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 222
+PL +AV + LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE
Sbjct: 306 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEI 364
Query: 223 DK---TALPVSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 273
K T P C+ + I+ P + R+ PPL++S +E+ G L
Sbjct: 365 VKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 424
Query: 274 HDVLE 278
+E
Sbjct: 425 GQAIE 429
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 141/285 (49%), Gaps = 24/285 (8%)
Query: 12 FHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFKESGD 59
+HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 144 YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 60 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 173
E+ PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L ++ ++ A + +LR+ L + V +VR G VE T PV+
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARD--AEMVADVRVLGAIGVVE---TTHPVNMAA 378
Query: 234 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
+ E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 21/245 (8%)
Query: 49 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 108
A + I ++S +A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R
Sbjct: 192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGR 251
Query: 109 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGG 162
+G M A + V PD++ L K LG G +P++A++ I+ H +T
Sbjct: 252 TGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVS 306
Query: 163 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 222
+PL +AV + LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE
Sbjct: 307 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEI 365
Query: 223 DK---TALPVSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 273
K T P C+ + I+ P + R+ PPL++S +E+ G L
Sbjct: 366 VKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 425
Query: 274 HDVLE 278
+E
Sbjct: 426 GQAIE 430
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 145/307 (47%), Gaps = 40/307 (13%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITAL 50
IV +HG T AA S + + +G GP G + + + L
Sbjct: 131 IVGFAQSWHGMTGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAEL 189
Query: 51 EKIF----KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 106
+ F ++S +A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+
Sbjct: 190 DYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV 249
Query: 107 ARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STF 160
R+G M A + V PD++ L K LG G +P++A++ I+ H +T
Sbjct: 250 GRTGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTH 304
Query: 161 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 220
+PL +AV + LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL V
Sbjct: 305 VSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGV 363
Query: 221 EFDK---TALPVSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSK 271
E K T P C+ + I+ P + R+ PPL++S +E+ G
Sbjct: 364 EIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLS 423
Query: 272 ALHDVLE 278
L +E
Sbjct: 424 LLGQAIE 430
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 21/245 (8%)
Query: 49 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 108
A + I ++S +A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R
Sbjct: 190 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGR 249
Query: 109 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGG 162
+G M A + V PD++ L K LG G +P++A++ I+ H +T
Sbjct: 250 TGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVS 304
Query: 163 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 222
+PL +AV + LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE
Sbjct: 305 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEI 363
Query: 223 DK---TALPVSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 273
K T P C+ + I+ P + R+ PPL++S +E+ G L
Sbjct: 364 VKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 423
Query: 274 HDVLE 278
+E
Sbjct: 424 GQAIE 428
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 140/285 (49%), Gaps = 24/285 (8%)
Query: 12 FHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFKESGD 59
FHG T A+S+ DN + LP +L + D D+ ++
Sbjct: 144 FHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 60 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 173
E+ PD++ LG AL GG + +SA L +EV I GE HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L ++ ++ A + +LR+ L + V +VR G VE T PV+
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARD--AEMVADVRVLGAIGVVE---TTHPVNMAA 378
Query: 234 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
+ E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 18/243 (7%)
Query: 51 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 110
E I +E D IAGF EP+ G GVI P GY +A+ + KY+I +I+DE+ G R+G
Sbjct: 227 ETIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG 286
Query: 111 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-------MLCIQPGEHGSTFGGN 163
+ PD +I K L G P AV+ E+ + I+ HG T G+
Sbjct: 287 NTWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGH 346
Query: 164 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 223
P+ A+A+ ++DV+ +E LAE L + L I ++ PN + E RG G A+E
Sbjct: 347 PVGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAER-PN-IGEYRGIGFXWALEAV 404
Query: 224 KTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 275
K + +D L + ER G++ +P ++V L PP ++ + E L
Sbjct: 405 KDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQXDEXFDKLEK 463
Query: 276 VLE 278
L+
Sbjct: 464 ALD 466
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 140/285 (49%), Gaps = 24/285 (8%)
Query: 12 FHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFKESGD 59
+HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 144 YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 60 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 173
E+ PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L ++ ++ A + +LR+ L + V +VR G VE T PV+
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARD--AEMVADVRVLGAIGVVE---TTHPVNMAA 378
Query: 234 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
+ E+G+ P ++ L PP I +LQ + A++ ++
Sbjct: 379 LQKFFVEQGVWIAP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 24/285 (8%)
Query: 12 FHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFKESGD 59
+HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 144 YHGNTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 60 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 173
E+ PD++ LG AL GG + +SA L +EV I GE HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L ++ ++ A + +LR+ L + V +VR G VE T PV+
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARD--AEMVADVRVLGAIGVVE---TTHPVNMAA 378
Query: 234 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
+ E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 139/308 (45%), Gaps = 38/308 (12%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD------FGDITALEKIF---- 54
I++ +HG T + SM+ FG LPG + + +G+ E F
Sbjct: 155 ILTRWNAYHGVTAVSASMT-GKPYNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVARL 213
Query: 55 ---------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 105
+E D IAGF EP+ G GVI P GY +A+ + KY+I MI+DE+ G
Sbjct: 214 ARELEDTITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICG 273
Query: 106 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-------MLCIQPGEHGS 158
R+G + PD +I L G P+ AV+ ++ + I+ HG
Sbjct: 274 FGRTGNTWGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGF 333
Query: 159 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 218
T G+P+ A+A+ ++DV+ +E LAE L L +I + PN + E RG G
Sbjct: 334 TASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADR-PN-IGEYRGIGFMW 391
Query: 219 AVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTPPLSISSNELQEGS 270
A+E K + +D L + ER G++ +P +IV L PP ++ ++ E
Sbjct: 392 ALEAVKDKPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIV-LCPPFILTEAQMDEMF 450
Query: 271 KALHDVLE 278
+ L L+
Sbjct: 451 EKLEKALD 458
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 22/249 (8%)
Query: 51 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 110
E I +E D IAGF EP+ G GVI P GY +A+ + KY+I +I+DE+ G R+G
Sbjct: 227 ETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTG 286
Query: 111 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-------MLCIQPGEHGSTFGGN 163
+ PD +I L G P+ AV+ E+ + I+ HG T G+
Sbjct: 287 NTWGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGH 346
Query: 164 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 223
P+ A+A+ ++DV+ +E LAE L + L I ++ PN + E RG G A+E
Sbjct: 347 PVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER-PN-IGEYRGIGFMWALEAV 404
Query: 224 KTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 275
K + +D L + ER G++ P ++V L PP ++ ++ E + D
Sbjct: 405 KDKASKTPFDGNLSVSERIANTCTDLGLICFPLGQSVV-LCPPFILTEAQMDE----MFD 459
Query: 276 VLELDLPKM 284
LE L K+
Sbjct: 460 KLEKALDKV 468
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 24/285 (8%)
Query: 12 FHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFKESGD 59
+HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 144 YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 60 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G R+G++ A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 173
E+ PD++ LG AL GG + +SA L +EV I GE HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L ++ ++ A + +LR+ L + V +VR G VE T PV+
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARD--AEMVADVRVLGAIGVVE---TTHPVNMAA 378
Query: 234 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
+ E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 137/291 (47%), Gaps = 24/291 (8%)
Query: 5 IVSCCGCFHGRTLAAIS----------MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIF 54
+++ G +HG T A+S + D A + F P +P D A E
Sbjct: 170 LMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQL 227
Query: 55 KESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 113
+ ++A + EP+ QG G+ YL +RD+C +Y +L+I DEI +G R+G +
Sbjct: 228 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF 287
Query: 114 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASA 168
A+D V PD++ +GKAL GG + ++A L +V I G HG TF NPLA A
Sbjct: 288 AADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACA 347
Query: 169 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 228
V++AS++++ + R L L L + P V +VR G +E D+ P
Sbjct: 348 VSVASVELLLGQDWRTRITELAAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---P 402
Query: 229 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 279
V +RG+ +P + +V PP + E+ + + A+ +V L
Sbjct: 403 VDLAVATPAALDRGVWLRPFRN-LVYAMPPYICTPAEITQITSAMVEVARL 452
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 24/285 (8%)
Query: 12 FHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFKESGD 59
+HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 144 YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 60 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G +G++ A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLFACEHA 263
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 173
E+ PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L ++ ++ A + +LR+ L + V +VR G VE T PV+
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARD--AEMVADVRVLGAIGVVE---TTHPVNMAA 378
Query: 234 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
+ E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 140/285 (49%), Gaps = 24/285 (8%)
Query: 12 FHGRTLAAISM-SCDNEAIRGFGPLLPGHL-----------KVDFGDITALEKIFKESGD 59
+HG T A+S+ DN + LP +L + D D+ ++
Sbjct: 144 YHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203
Query: 60 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+IA + EPI QG G+ + +LK +R +C + IL+IADEI +G ++G++ A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHA 263
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 173
E+ PD++ LG AL GG + +SA L +EV I GE HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L ++ ++ A + +LR+ L + V +VR G VE T PV+
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARD--AEMVADVRVLGAIGVVE---TTHPVNMAA 378
Query: 234 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
+ E+G+ +P ++ L PP I +LQ + A++ ++
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 137/291 (47%), Gaps = 24/291 (8%)
Query: 5 IVSCCGCFHGRTLAAIS----------MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIF 54
+++ G +HG T A+S + D A + F P +P D A E
Sbjct: 150 LMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQL 207
Query: 55 KESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 113
+ ++A + EP+ QG G+ YL +RD+C +Y +L+I DEI +G R+G +
Sbjct: 208 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF 267
Query: 114 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASA 168
A+D V PD++ +GKAL GG + ++A L +V I G G+ TF NPLA A
Sbjct: 268 AADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACA 327
Query: 169 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 228
V++AS++++ + R L L L + P V +VR G +E D+ P
Sbjct: 328 VSVASVELLLGQDWRTRITELAAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---P 382
Query: 229 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 279
V +RG+ +P + +V PP + E+ + + A+ +V L
Sbjct: 383 VDLAVATPAALDRGVWLRPFRN-LVYAMPPYICTPAEITQITSAMVEVARL 432
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 137/291 (47%), Gaps = 24/291 (8%)
Query: 5 IVSCCGCFHGRTLAAIS----------MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIF 54
+++ G +HG T A+S + D A + F P +P D A E
Sbjct: 175 LMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQL 232
Query: 55 KESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 113
+ ++A + EP+ QG G+ YL +RD+C +Y +L+I DEI +G R+G +
Sbjct: 233 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF 292
Query: 114 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASA 168
A+D V PD++ +GKAL GG + ++A L +V I G G+ TF NPLA A
Sbjct: 293 AADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACA 352
Query: 169 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 228
V++AS++++ + R L L L + P V +VR G +E D+ P
Sbjct: 353 VSVASVELLLGQDWRTRITELAAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---P 407
Query: 229 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 279
V +RG+ +P + +V PP + E+ + + A+ +V L
Sbjct: 408 VDLAVATPAALDRGVWLRPFRN-LVYAMPPYICTPAEITQITSAMVEVARL 457
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 137/292 (46%), Gaps = 31/292 (10%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL----------PGHLKVDFGDITALEKIF 54
+++ +HG +L +++ S + PL+ P + D L +
Sbjct: 124 VITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALL 183
Query: 55 KESG-DQIAGFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 112
+ G + +A F+ EP+ G + + P GY + VRD+C + I+ IADE+ SG+ R G
Sbjct: 184 EREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP 243
Query: 113 LA-SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE----HGSTFGGNPLAS 167
LA S W V PD+ +LGK L G P++ +LA +V + G HG T+ G+P++
Sbjct: 244 LALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSV 303
Query: 168 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA- 226
A ++ LD++ E L + G +L L +Q +FP + +VRG GL V A
Sbjct: 304 AAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQ-MMQVRGTGLLLGVVLGDLAT 362
Query: 227 -----LPVSAYDICLKMKERGILAKPTHDT-------IVRLTPPLSISSNEL 266
P A I +RG++ P + L PPLSI++ E+
Sbjct: 363 GQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEV 414
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 51 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 110
E I E + IA F+ EPI G G++ PP GY + ++ + KY++L++ADE+ +G R G
Sbjct: 212 EXILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG 271
Query: 111 RMLASDWEEVRPDMV-ILGKALGGGVIPVSAVL-ADKEVMLCIQPGE------HGSTFGG 162
SD ++PD++ I K L P+S V+ AD+ + +Q + HG T+
Sbjct: 272 TXFGSDHYGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSA 331
Query: 163 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 222
+P+ A +A+L++I + L + G R L K N V EVRG G AVEF
Sbjct: 332 HPICVAAGVANLELIDEXDLVTNAGETGAYFRAELAKAVGGHKN-VGEVRGDGXLAAVEF 390
Query: 223 -----DKTALPVSAY---DICLKMKERGIL--AKPTHDTIVRLTPPLSISSNE 265
D+ S + + G++ A P D I+ PPL ++ +
Sbjct: 391 VADKDDRVFFDASQKIGPQVATALAASGVIGRAXPQGD-ILGFAPPLCLTREQ 442
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 128/300 (42%), Gaps = 41/300 (13%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA--------------- 49
++ G FHGR+ +S++ I P K D+ I A
Sbjct: 160 VLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLDEPAMAAL 213
Query: 50 -------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 102
F+ IA F+ EPIQGE G + A+R+LC +++ L+I DE+
Sbjct: 214 EAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEV 273
Query: 103 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCIQPGEHG 157
Q+G +G A +V PD+V GK V V+A + V + P
Sbjct: 274 QTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVFAVPSRLA 328
Query: 158 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 217
ST+GGN A L+VI E L ER+ G+ LR L ++ FP V + RGRGL
Sbjct: 329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM 388
Query: 218 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
A TA ++ ++ +R ++ P VR PPL++S+ E+ A+ L
Sbjct: 389 CAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSAL 445
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 128/300 (42%), Gaps = 41/300 (13%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA--------------- 49
++ G FHGR+ +S++ I P K D+ I A
Sbjct: 160 VLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLDEPAMAAL 213
Query: 50 -------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 102
F+ IA F+ EPIQGE G + A+R+LC +++ L+I DE+
Sbjct: 214 EAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEV 273
Query: 103 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCIQPGEHG 157
Q+G +G A +V PD+V GK V V+A + V + P
Sbjct: 274 QTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVFAVPSRLN 328
Query: 158 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 217
ST+GGN A L+VI E L ER+ G+ LR L ++ FP V + RGRGL
Sbjct: 329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM 388
Query: 218 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
A TA ++ ++ +R ++ P VR PPL++S+ E+ A+ L
Sbjct: 389 CAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSAL 445
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 21/235 (8%)
Query: 53 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 112
I +E D IA F+ EPI G G++ PP GY +A++ + +K++IL++ADE+ +G R G
Sbjct: 213 IEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTX 272
Query: 113 LASDWEEVRPDMV-ILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFGGNP 164
SD + PD++ I K L P+S + +V ++ G HG T+ +P
Sbjct: 273 FGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHP 332
Query: 165 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 224
+ +A +A+L ++ + L + +G L + Q N V +VRG GL AVEF K
Sbjct: 333 IGAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQHAN-VGDVRGEGLLCAVEFVK 391
Query: 225 TALPVSAYD--------ICLKMKERGIL---AKPTHDTIVRLTPPLSISSNELQE 268
+ +D I K+ E+ + A P D I+ PP ++ E +
Sbjct: 392 DRDSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGD-ILGFAPPFCLTRAEADQ 445
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 17/241 (7%)
Query: 43 DFGDITAL---EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 99
+FG + A EKI + D++A F+ EPIQG GVI+PP Y + +C KY++L++A
Sbjct: 199 EFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVA 258
Query: 100 DEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EH 156
DE+ G R+G +PD+ K L G +P+ AV K V + G H
Sbjct: 259 DEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNH 318
Query: 157 GSTFGGNPLASAVAIASLDVIRDEKLAER-SAHLGEELRQHLFKIQQQFPNYVKEVRGRG 215
G T+ G+P+ +AVA A++ +RDE + +R +G +++ + +F +V +VRG G
Sbjct: 319 GFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRF-EHVDDVRGVG 377
Query: 216 LFNAVEFDKTALPVSAY-------DICLKMKER-GILAKPTHDTIVRLTPPLSISSNELQ 267
+ A K + +C + R ++ + D IV PPL ++ E+
Sbjct: 378 MVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVS-APPLVMTRAEVD 436
Query: 268 E 268
E
Sbjct: 437 E 437
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 128/300 (42%), Gaps = 41/300 (13%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA--------------- 49
++ G FHGR+ +S++ I P K D+ I A
Sbjct: 160 VLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLDEPAMAAL 213
Query: 50 -------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 102
F+ IA F+ EPIQGE G + A+R+LC +++ L+I DE+
Sbjct: 214 EAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEV 273
Query: 103 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCIQPGEHG 157
Q+G +G A +V PD+V GK V V+A + V + P
Sbjct: 274 QTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVFAVPSRLN 328
Query: 158 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 217
S++GGN A L+VI E L ER+ G+ LR L ++ FP V + RGRGL
Sbjct: 329 SSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM 388
Query: 218 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
A TA ++ ++ +R ++ P VR PPL++S+ E+ A+ L
Sbjct: 389 CAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSAL 445
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 127/300 (42%), Gaps = 41/300 (13%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA--------------- 49
++ G FHGR+ +S++ I P K D+ I A
Sbjct: 160 VLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLDEPAMAAL 213
Query: 50 -------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 102
F+ IA F+ EPIQG G + A+R+LC +++ L+I DE+
Sbjct: 214 EAEALRQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEV 273
Query: 103 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCIQPGEHG 157
Q+G +G A +V PD+V GK V V+A + V + P
Sbjct: 274 QTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVFAVPSRLN 328
Query: 158 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 217
ST+GGN A L+VI E L ER+ G+ LR L ++ FP V + RGRGL
Sbjct: 329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM 388
Query: 218 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
A TA ++ ++ +R ++ P VR PPL++S+ E+ A+ L
Sbjct: 389 CAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSAL 445
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 21/227 (9%)
Query: 59 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
D IA FL EPI GVIIPP GY + +C K++IL I+DE+ +G R G AS+
Sbjct: 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKV 279
Query: 119 -EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--------HGSTFGGNPLASAV 169
V PD++ K + G +P+ LA E +L GE +G T+ P+A A
Sbjct: 280 FGVVPDIITFAKGVTSGYVPLGG-LAISEAVLARISGENAKGSWFTNGYTYSNQPVACAA 338
Query: 170 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE--FDKTAL 227
A+A+++++ E + +++ + + L + + P V E R GL V+ D T
Sbjct: 339 ALANIELMEREGIVDQAREMADYFAAALASL-RDLPG-VAETRSVGLVGCVQCLLDPTRA 396
Query: 228 PVSAYD--ICLKMKER----GILAKPTHDTIVRLTPPLSISSNELQE 268
+A D LK+ ER G++ +P D V ++PPL IS ++ E
Sbjct: 397 DGTAEDKAFTLKIDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDE 442
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 51 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 110
E I + +++A F+ EP+QG GVI+ PD Y ++ +C KY+IL+IADE+ G R+G
Sbjct: 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG 273
Query: 111 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASA 168
+ +RP ++ + K L G P+ + EV I E HG T+ G+P+A+A
Sbjct: 274 NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAA 333
Query: 169 VAIASLDVIRDEKL 182
VA+ +L ++ +E +
Sbjct: 334 VALENLRILEEENI 347
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 141/289 (48%), Gaps = 33/289 (11%)
Query: 5 IVSCCGCFHGRTLAAISMS---CDNEAIRGFGPLL---PGHLKVDFGDITA-------LE 51
+++ G +HG T+ +++ S +A + G +L P + D T E
Sbjct: 146 VIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTE 205
Query: 52 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 111
K+ I EPIQ + G+I+PPDG+L+ D+C + IL++ DE++ GLARSGR
Sbjct: 206 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 265
Query: 112 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 171
+ + E PD +++ GG +P+SAV+A E++ C T GNP+++A +
Sbjct: 266 LHCFEHEGFVPD-ILVLGKGLGGGLPLSAVIAPAEILDCASAFAM-QTLHGNPISAAAGL 323
Query: 172 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF--------- 222
A L+ I + L + G LR L ++ ++ P + ++RGRGL +E
Sbjct: 324 AVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREP 382
Query: 223 ---DKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 268
+ L AY + L + G+ + ++ TPPL+I+ ++ +
Sbjct: 383 ARAETAKLIYRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHK 426
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 141/289 (48%), Gaps = 33/289 (11%)
Query: 5 IVSCCGCFHGRTLAAISMS---CDNEAIRGFGPLL---PGHLKVDFGDITA-------LE 51
+++ G +HG T+ +++ S +A + G +L P + D T E
Sbjct: 133 VIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTE 192
Query: 52 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 111
K+ I EPIQ + G+I+PPDG+L+ D+C + IL++ DE++ GLARSGR
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 252
Query: 112 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 171
+ + E PD +++ GG +P+SAV+A E++ C T GNP+++A +
Sbjct: 253 LHCFEHEGFVPD-ILVLGKGLGGGLPLSAVIAPAEILDCASAFAM-QTLHGNPISAAAGL 310
Query: 172 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF--------- 222
A L+ I + L + G LR L ++ ++ P + ++RGRGL +E
Sbjct: 311 AVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREP 369
Query: 223 ---DKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 268
+ L AY + L + G+ + ++ TPPL+I+ ++ +
Sbjct: 370 ARAETAKLIYRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHK 413
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 35/271 (12%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKE 56
I+ GC+HG + + A G P PG L + D+ A++ +F E
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAE 195
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
+ +IAG + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+
Sbjct: 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF----RIAYGG 251
Query: 117 WEE---VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVA 170
+E V PD+ LGK +GGG +PV A +E+M + P T GNPLA
Sbjct: 252 VQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG 310
Query: 171 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 230
I +L+++R E + + L L I Q+ + + G+F F T PV
Sbjct: 311 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVH 367
Query: 231 AYDICLK------------MKERGILAKPTH 249
Y+ K M E+GI P+
Sbjct: 368 NYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 398
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 16/231 (6%)
Query: 60 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE 119
IA EP+ G AGV++PP+GYLK R++C+++NIL++ DE+ +G R+G M +D
Sbjct: 219 NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFG 278
Query: 120 VRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPG-------EHGSTFGGNPLASAVA 170
V PD++ + K + G IP+ AV+A E+ QP HG T+ +P+A A
Sbjct: 279 VTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAG 338
Query: 171 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTAL 227
+A+L +++ E L + A + + L I+ V ++R GL A++ D A+
Sbjct: 339 LAALCLLQKENLVQSVAEVAPHFEKALHGIKGA--KNVIDIRNFGLAGAIQIAPRDGDAI 396
Query: 228 PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 278
V ++ + + + G + DT+ + P + +L A+ +VL
Sbjct: 397 -VRPFEAGMALWKAGFYVRFGGDTL-QFGPTFNSKPQDLDRLFDAVGEVLN 445
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 35/271 (12%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKE 56
I+ GC+HG + + A G P PG L + D+ A++ +F E
Sbjct: 142 IIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAE 200
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
+ +IAG + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+
Sbjct: 201 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF----RIAYGG 256
Query: 117 WEE---VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVA 170
+E V PD+ LGK +GGG +PV A +E+M + P T GNPLA
Sbjct: 257 VQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG 315
Query: 171 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 230
I +L+++R E + + L L I Q+ + + G+F F T PV
Sbjct: 316 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVH 372
Query: 231 AYDICLK------------MKERGILAKPTH 249
Y+ K M E+GI P+
Sbjct: 373 NYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 403
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 35/271 (12%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKE 56
I+ GC+HG + + A G P PG L + D+ A++ +F E
Sbjct: 142 IIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAE 200
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
+ +IAG + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+
Sbjct: 201 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF----RIAYGG 256
Query: 117 WEE---VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVA 170
+E V PD+ LGK +GGG +PV A +E+M + P T GNPLA
Sbjct: 257 VQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG 315
Query: 171 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 230
I +L+++R E + + L L I Q+ + + G+F F T PV
Sbjct: 316 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVH 372
Query: 231 AYDICLK------------MKERGILAKPTH 249
Y+ K M E+GI P+
Sbjct: 373 NYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 403
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 35/271 (12%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKE 56
I+ GC+HG + + A G P PG L + D+ A++ +F E
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAE 195
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
+ +IAG + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+
Sbjct: 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF----RIAYGG 251
Query: 117 WEE---VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVA 170
+E V PD+ LGK +GGG +PV A +E+M + P T GNPLA
Sbjct: 252 VQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG 310
Query: 171 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 230
I +L+++R E + + L L I Q+ + + G+F F T PV
Sbjct: 311 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVH 367
Query: 231 AYDICLK------------MKERGILAKPTH 249
Y+ K M E+GI P+
Sbjct: 368 NYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 398
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 35/271 (12%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKE 56
I+ GC+HG + + A G P PG L + D+ A++ +F E
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAE 195
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
+ +IAG + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R+
Sbjct: 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF----RIAYGG 251
Query: 117 WEE---VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVA 170
+E V PD+ LGK +GGG +PV A +E+M + P T GNPLA
Sbjct: 252 VQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG 310
Query: 171 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 230
I +L+++R E + + L L I Q+ + + G+F F T PV
Sbjct: 311 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVH 367
Query: 231 AYDICLK------------MKERGILAKPTH 249
Y+ K M E+GI P+
Sbjct: 368 NYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 398
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--------FGDITALEKIFKE 56
++ GC+HG + + A G P PG K + D+ A+ ++F++
Sbjct: 121 VIKFEGCYHGHADMFLVKAGSGVATLGL-PDSPGVPKATTAATLTAPYNDLEAVSRLFEQ 179
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
+ IAG + EP+ G AG I P G+L+ +R+L +Y L++ DE+ +G R A +
Sbjct: 180 YPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQE 238
Query: 117 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIAS 173
V PD+ LGK +GGG +PV A E+M + P T GNPLA I +
Sbjct: 239 KFGVTPDLTTLGKVIGGG-LPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKT 297
Query: 174 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 233
L+++ E + +L Q L ++F + V G+F TA PV+ Y+
Sbjct: 298 LEILSRPGSYEHLDRITGKLVQGLLDAAREFGHEVCGGHISGMFGLF---FTAGPVTNYE 354
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 88/145 (60%), Gaps = 10/145 (6%)
Query: 40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 99
L +++ D L ++ K G++IA +FEP+ G AGV++P + +LKA+ + Y +L+IA
Sbjct: 179 LVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIA 237
Query: 100 DEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PG 154
DE+ +G LA G A++ ++PD+V LGK LGGG +P +A +E+M + P
Sbjct: 238 DEVMTGFRLAFGG---ATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPLGPV 293
Query: 155 EHGSTFGGNPLASAVAIASLDVIRD 179
T GNPLA A +A+L+++ +
Sbjct: 294 YQAGTLSGNPLAMAAGLATLELLEE 318
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 14/188 (7%)
Query: 4 IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFK 55
+I+ GC+HG A + + A G P G L + D+ ALE++F
Sbjct: 140 LILKFDGCYHGSHDAVLVAAGSAAAHYGV-PTSAGVPEAVARLTLVTPYNDVEALERVFA 198
Query: 56 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS 115
E GD+IAG + EP+ AGVI P +L A++ L + L+I DE+ +G R G A
Sbjct: 199 EYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQ 257
Query: 116 DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGSTFGGNPLASAVAIA 172
+ + D+++LGK +GGG PV AV +EVM + P G+ + TF +P+ A +A
Sbjct: 258 GYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA 316
Query: 173 SLDVIRDE 180
+L + +E
Sbjct: 317 TLKALEEE 324
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKE 56
I+ GC+HG + + + A G P PG + V + D+ +++ F++
Sbjct: 146 ILKFEGCYHGHGDSLLIKAGSGVATLGL-PDSPGVPEGIAKNTITVPYNDLESVKLAFQQ 204
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
G+ IAG + EP+ G GV+ P +G+L+ +RD+ +Y L+I DE+ +G R A
Sbjct: 205 FGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQG 263
Query: 117 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIAS 173
+ V PD+ LGK +GGG +PV A E+M I P T GNPLA + +
Sbjct: 264 YFGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLET 322
Query: 174 L 174
L
Sbjct: 323 L 323
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKE 56
I+ GC+HG + + + A G P PG + V + D+ +++ F++
Sbjct: 138 ILKFIGCYHGHGDSLLIKAGSGVATLGL-PDSPGVPEGVAKNTITVAYNDLESVKYAFEQ 196
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
GD IA + EP+ G GV+ P G+L+ +R++ + L+I DE+ +G R
Sbjct: 197 FGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYNCGQG 255
Query: 117 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIAS 173
+ V PD+ LGK +GGG +PV A E+ + P T GNPLA A +
Sbjct: 256 YYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYET 314
Query: 174 LDVIRDEKLAE 184
L + E E
Sbjct: 315 LVQLTPESYVE 325
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 36/298 (12%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGF------GPLLPG-HLKVDFGDITA-------- 49
I+S G FHGRT+ ++ + ++AI P+ P LK +
Sbjct: 182 ILSFMGAFHGRTMGCLA-TTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEAR 240
Query: 50 -LEKI------FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 102
LE++ +++ +AG + EPIQ E G D + + +RD+ K+ + DE+
Sbjct: 241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEV 300
Query: 103 QSGLARSGRMLASD-WEEVRPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST 159
Q+G +G+ A + W P M K + GG KE P +T
Sbjct: 301 QTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF-------HKEEFRPNAPYRIFNT 353
Query: 160 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 219
+ G+P + + +++I+ E L +AH G+ L L +Q ++P ++ VRGRG F
Sbjct: 354 WLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTF-- 411
Query: 220 VEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 277
FD + I + + +G++ D +R P L + D+L
Sbjct: 412 CSFDTPDESIRNKLISI-ARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 26/212 (12%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH--------------LKVDFGDITAL 50
I GC+HG + + + G GP G + V F ++ L
Sbjct: 140 IXKFAGCYHGHSDLVLVAA-------GSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETL 192
Query: 51 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 110
++ + G ++A L EPI G G++ P G+L+ V +L + L+I DE+ + R
Sbjct: 193 KEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFX 251
Query: 111 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV---MLCIQPGEHGSTFGGNPLAS 167
A D V PD+ LG +GGG +P+ A KE+ + + P T GNP +
Sbjct: 252 YGGAQDLLGVTPDLTALGXVIGGG-LPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASX 310
Query: 168 AVAIASLDVIRDEKLAERSAHLGEELRQHLFK 199
A IA L+V++ E L E+ LG L + + +
Sbjct: 311 ASGIACLEVLQQEGLYEKLDELGATLEKGILE 342
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 100/229 (43%), Gaps = 21/229 (9%)
Query: 5 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKE 56
I+ GC+HG + + G P PG L + D+ ++ + F++
Sbjct: 138 IIKFEGCYHGHADCLLVKAGSGALTLG-QPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQ 196
Query: 57 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 116
++A + EP+ G I P +L +R LC ++ L+I DE+ +G R A D
Sbjct: 197 YPQEVACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQD 255
Query: 117 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIAS 173
+ V PD+ LGK +GGG PV A +EV + P T GNP+A A A
Sbjct: 256 YYHVIPDLTCLGKIIGGGX-PVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFAC 314
Query: 174 LDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLF 217
L I E L E + L LR H K ++ P V V G GLF
Sbjct: 315 LTEISQVGVYETLTELTDSLATGLR-HAAK-EENIPLVVNHVGGXFGLF 361
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 40 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 99
L + + D + G +IA L EP+QG +G I +L+A+R+ ++ L++
Sbjct: 200 LVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVF 259
Query: 100 DEI-QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--- 155
DE+ S LA G LA+ +R D+ LGK +GGG + A +VM P
Sbjct: 260 DEVMTSRLAPHG--LANKL-GIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRTGPL 315
Query: 156 -HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 197
H TF N + A A L + + A A GE LR L
Sbjct: 316 AHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARL 358
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 46 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 105
DI + ++F G IA F+ EP+ GV D +L+ +L +Y L I DE+ SG
Sbjct: 187 DIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISG 246
Query: 106 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTF 160
R G +V+PD+ L KA G +P + ++VM + G H TF
Sbjct: 247 F-RVGNHGMQALLDVQPDLTCLAKA-SAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTF 304
Query: 161 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ---HLF 198
GNP+ +A AIA++D I ++ + + LG+ R+ HLF
Sbjct: 305 TGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLF 345
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 23/221 (10%)
Query: 44 FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 103
+ D+ + K G A L EP+ G G + +L +R S+ L+I DE+
Sbjct: 217 YNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276
Query: 104 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGS 158
+ G A + + D+ LGK +GGG + A +++M P H
Sbjct: 277 TSRLSGGG--AQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARDGAFAHAG 333
Query: 159 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI--QQQFPNYVKEVRGRGL 216
TF N L + A+L I + A + G+ R +L +I + Q P + G G
Sbjct: 334 TFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAP---LQFTGLGS 390
Query: 217 FNAVEFD----KTALPVSAYDICLK------MKERGILAKP 247
+ F ++A V A D LK M +GI P
Sbjct: 391 LGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAP 431
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 17/215 (7%)
Query: 60 QIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+ + EP I G G+ + + + + + C I +I DE+ +G R G ++
Sbjct: 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 172
+PD+ K L GG++P++ LA V HG ++ + + A A
Sbjct: 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAK 713
Query: 173 SLDVIRDEKLAERSAHLGEELRQHLF--KIQQQFPNY--VKEVRGRGLFNAVEFDKTA-- 226
++ +D + G+ LR+ L+ ++ QQ ++ V+ V G A+E A
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRE-LWDEELVQQISSHSAVQRVVVIGTLFALELKADASN 772
Query: 227 ---LPVSAYDICLKMKERGILAKPTHDTIVRLTPP 258
+ A + + ++E GI +P + I + P
Sbjct: 773 SGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGP 807
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 17/209 (8%)
Query: 60 QIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 118
+ + EP I G G + + + + C I +I DE+ +G R G ++
Sbjct: 594 HVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 119 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 172
+PD+ K L GG +P++ LA V HG ++ + A A
Sbjct: 654 GCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAK 713
Query: 173 SLDVIRDEKLAERSAHLGEELRQHLF--KIQQQFPNY--VKEVRGRGLFNAVEFDKTA-- 226
++ +D + G+ LR+ L+ ++ QQ ++ V+ V G A+E A
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRE-LWDEELVQQISSHSAVQRVVVIGTLFALELKADASN 772
Query: 227 ---LPVSAYDICLKMKERGILAKPTHDTI 252
+ A + + ++E GI +P + I
Sbjct: 773 SGYASLYAKSLLIXLREDGIFTRPLGNVI 801
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 218 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 268
N V L V+A+ ++ G+LA DT +RL +S N+++E
Sbjct: 284 NXVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEE 334
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 83 LKAVRDLCSKYNILMIADEIQSGL 106
L + LC+KYN++++ADEI S +
Sbjct: 178 LTKLGSLCTKYNVIVVADEIHSDI 201
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 218 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 268
N V L V+A+ ++ G+LA DT +RL +S N+++E
Sbjct: 292 NMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEE 342
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 218 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 268
N V L V+A+ ++ G+LA DT +RL +S N+++E
Sbjct: 284 NMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEE 334
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 194 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI-CLKMKERGI 243
R ++ +F N++KE + GL + F+KT+ + +D+ + +KE G+
Sbjct: 321 RHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGL 371
>pdb|3BNW|A Chain A, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
pdb|3BNW|B Chain B, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
Length = 181
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 21/75 (28%)
Query: 125 VILGKALGGGVI--PVSAVLADKEVMLCIQ----------------PGEHGSTFGGNPLA 166
V+ GK GG + P + + DK+VM C+Q PG+ +FG P A
Sbjct: 24 VVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVPGKERESFGPYPFA 83
Query: 167 SAVAIASLDVIRDEK 181
+++ ++ DEK
Sbjct: 84 ASIG---FNMQFDEK 95
>pdb|3MQ0|A Chain A, Crystal Structure Of Agobacterium Tumefaciens Repressor
Blcr
pdb|3MQ0|B Chain B, Crystal Structure Of Agobacterium Tumefaciens Repressor
Blcr
Length = 275
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 145 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 194
+E MLCI G+ A++ IA + +IR E E+ A+LGEELR
Sbjct: 215 REGMLCI-----GAAIRDYSGAASAGIA-ISLIRSEASDEKIAYLGEELR 258
>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase
From Arabidopsis Thaliana In Complex With Coformycin
5'-Phosphate
Length = 701
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 246 KPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 279
+P +T VRL PL + +++ E K L + LEL
Sbjct: 86 EPEQETFVRLNVPLEVPTSDEVEAYKCLQECLEL 119
>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
pdb|3DZZ|B Chain B, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
Length = 391
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 83 LKAVRDLCSKYNILMIADEIQSGL 106
+K + +LC+K+ +L+I+DEI L
Sbjct: 182 VKRIAELCAKHQVLLISDEIHGDL 205
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 25 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 84
D+ + ++ G ++DF LEK ++ +I +L G + D +K
Sbjct: 164 DHRLVENSLQIINGRFEIDF---EQLEKDIIDNNVKI--YLLCSPHNPGGRVWDNDDLIK 218
Query: 85 AVRDLCSKYNILMIADEIQSGLARSGR 111
+ +LC K+ +++++DEI LA G
Sbjct: 219 -IAELCKKHGVILVSDEIHQDLALFGN 244
>pdb|2X1D|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1E|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
Length = 357
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 155 EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK----IQQQFPNYVKE 210
EHGS A AV S+D D + ++ EEL+Q L + I++++P Y +E
Sbjct: 16 EHGSA------AKAVIARSIDFAVD-LIRGKTKKTDEELKQVLSQLGRVIEERWPKYYEE 68
Query: 211 VRG 213
+RG
Sbjct: 69 IRG 71
>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DGT|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DQ6|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
pdb|4DQ6|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
Length = 391
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 83 LKAVRDLCSKYNILMIADEIQSGL 106
LK + D+C K+N+ +I+DEI S +
Sbjct: 186 LKKLGDICLKHNVKIISDEIHSDI 209
>pdb|2X1C|A Chain A, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|B Chain B, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|C Chain C, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|D Chain D, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
Length = 357
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 155 EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK----IQQQFPNYVKE 210
EHGS A AV S+D D + ++ EEL+Q L + I++++P Y +E
Sbjct: 16 EHGSA------AKAVIARSIDFAVD-LIRGKTKKTDEELKQVLSQLGRVIEERWPKYYEE 68
Query: 211 VRG 213
+RG
Sbjct: 69 IRG 71
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 106 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EHGST 159
+ R L S WE +RP + L G++P L K+ L IQ G G
Sbjct: 326 IKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKD--LVIQAGGGVMGHPDGPR 383
Query: 160 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 195
G L A+ A V DEK A+ S L + LR+
Sbjct: 384 AGAKALRDAIDAAIEGVDLDEK-AKSSPELKKSLRE 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,370,589
Number of Sequences: 62578
Number of extensions: 389535
Number of successful extensions: 1188
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 98
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)