BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021894
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 135/199 (67%), Gaps = 18/199 (9%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISP---IHFFGVYDGH 156
+G TS+ GRR EMEDAV+ +P F+ ++ GS G P HFFGVYDGH
Sbjct: 11 YGFTSICGRRPEMEDAVSTIPRFLQ---------SSSGSMLDGRFDPQSAAHFFGVYDGH 61
Query: 157 GGSQVAKFCAERMHEVIAEEWDRER-VCSD---WQRRWEVAFSSGFERTDNEVLTEAAAP 212
GGSQVA +C ERMH +AEE +E+ + SD W +W+ A + F R D+E+ E+ AP
Sbjct: 62 GGSQVANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEI--ESVAP 119
Query: 213 EMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGRV 272
E VGST+VV V+ I +NCGDSRAVLCRG +PL+VD KPDR+DE RIE AGG+V
Sbjct: 120 ETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKV 179
Query: 273 INWNGARVFGVLAMSRAIG 291
I WNGARVFGVLAMSR+IG
Sbjct: 180 IQWNGARVFGVLAMSRSIG 198
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 134/199 (67%), Gaps = 18/199 (9%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISP---IHFFGVYDGH 156
+G TS+ GRR EMEDAV+ +P F+ ++ GS G P HFFGVYDGH
Sbjct: 14 YGFTSICGRRPEMEDAVSTIPRFLQ---------SSSGSMLDGRFDPQSAAHFFGVYDGH 64
Query: 157 GGSQVAKFCAERMHEVIAEEWDRER--VCS--DWQRRWEVAFSSGFERTDNEVLTEAAAP 212
GGSQVA +C ERMH +AEE +E+ +C W +W+ A + F R D+E+ E+ AP
Sbjct: 65 GGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEI--ESVAP 122
Query: 213 EMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGRV 272
E VGST+VV V+ I +NCGDSRAVLCRG +PL+VD KPDR+DE RIE AGG+V
Sbjct: 123 ETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKV 182
Query: 273 INWNGARVFGVLAMSRAIG 291
I WNGARVFGVLAMSR+IG
Sbjct: 183 IQWNGARVFGVLAMSRSIG 201
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 134/199 (67%), Gaps = 18/199 (9%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISP---IHFFGVYDGH 156
+G TS+ GRR EMEDAV+ +P F+ ++ GS G P HFFGVYDGH
Sbjct: 26 YGFTSICGRRPEMEDAVSTIPRFLQ---------SSSGSMLDGRFDPQSAAHFFGVYDGH 76
Query: 157 GGSQVAKFCAERMHEVIAEEWDRER--VCS--DWQRRWEVAFSSGFERTDNEVLTEAAAP 212
GGSQVA +C ERMH +AEE +E+ +C W +W+ A + F R D+E+ E+ AP
Sbjct: 77 GGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEI--ESVAP 134
Query: 213 EMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGRV 272
E VGST+VV V+ I +NCGDSRAVLCRG +PL+VD KPDR+DE RIE AGG+V
Sbjct: 135 ETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKV 194
Query: 273 INWNGARVFGVLAMSRAIG 291
I WNGARVFGVLAMSR+IG
Sbjct: 195 IQWNGARVFGVLAMSRSIG 213
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 131/199 (65%), Gaps = 12/199 (6%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISP---IHFFGVYDGH 156
+G+TS+ GRR EMED+V+ +P F+ V + R +P HFFGVYDGH
Sbjct: 14 YGVTSICGRRPEMEDSVSTIPRFL-----QVSSSSLLDGRVTNGFNPHLSAHFFGVYDGH 68
Query: 157 GGSQVAKFCAERMHEVIAEEWDRER--VCS--DWQRRWEVAFSSGFERTDNEVLTEAAAP 212
GGSQVA +C ERMH + EE +E+ C WQ +W+ A + F R D+E+ T A AP
Sbjct: 69 GGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSEIETVAHAP 128
Query: 213 EMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGRV 272
E VGST+VV V+ I +NCGDSRAVLCRG + L+VD KPDR DE RIE AGG+V
Sbjct: 129 ETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKV 188
Query: 273 INWNGARVFGVLAMSRAIG 291
I WNGARVFGVLAMSR+IG
Sbjct: 189 IRWNGARVFGVLAMSRSIG 207
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 22/213 (10%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDGHGGS 159
WG S+ G R EMEDA V P F+ + G S S ++ HFFGVYDGHGG
Sbjct: 22 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTG-HFFGVYDGHGGH 80
Query: 160 QVAKFCAERMHEVIAEEWDR--ERVCSD-----WQRRWEVAFSSGFERTDNEV------- 205
+VA +C +R+H +AEE +R + +C Q +W+ F+S F D E+
Sbjct: 81 KVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRA 140
Query: 206 -------LTEAAAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDR 258
+ EA A E VGSTAVV ++ I+ SNCGDSRAVL RG E +PL+VD KPDR
Sbjct: 141 VVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDR 200
Query: 259 QDELERIEGAGGRVINWNGARVFGVLAMSRAIG 291
+DE RIE AGG+VI W GARVFGVLAMSR+IG
Sbjct: 201 EDEYARIENAGGKVIQWQGARVFGVLAMSRSIG 233
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 22/213 (10%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDGHGGS 159
WG S+ G R EMEDA V P F+ + G S S ++ HFFGVYDGHGG
Sbjct: 20 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTG-HFFGVYDGHGGH 78
Query: 160 QVAKFCAERMHEVIAEEWDR--ERVCSD-----WQRRWEVAFSSGFERTDNEV------- 205
+VA +C +R+H +AEE +R + +C Q +W+ F+S F D E+
Sbjct: 79 KVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRA 138
Query: 206 -------LTEAAAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDR 258
+ EA A E VGSTAVV ++ I+ SNCGDSRAVL RG E +PL+VD KPDR
Sbjct: 139 VVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDR 198
Query: 259 QDELERIEGAGGRVINWNGARVFGVLAMSRAIG 291
+DE RIE AGG+VI W GARVFGVLAMSR+IG
Sbjct: 199 EDEYARIENAGGKVIQWQGARVFGVLAMSRSIG 231
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 22/213 (10%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDGHGGS 159
WG S+ G R EMEDA V P F+ + G S S ++ HFFGVYDGHGG
Sbjct: 5 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTG-HFFGVYDGHGGH 63
Query: 160 QVAKFCAERMHEVIAEEWDR--ERVCSD-----WQRRWEVAFSSGFERTDNEV------- 205
+VA +C +R+H +AEE +R + +C Q +W+ F+S F D E+
Sbjct: 64 KVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRA 123
Query: 206 -------LTEAAAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDR 258
+ EA A E VGSTAVV ++ I+ SNCGDSRAVL RG E +PL+VD KPDR
Sbjct: 124 VVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDR 183
Query: 259 QDELERIEGAGGRVINWNGARVFGVLAMSRAIG 291
+DE RIE AGG+VI W GARVFGVLAMSR+IG
Sbjct: 184 EDEYARIENAGGKVIQWQGARVFGVLAMSRSIG 216
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 22/213 (10%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDGHGGS 159
WG S+ G R EMEDA V P F+ + G S S ++ HFFGVYDGHGG
Sbjct: 16 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTG-HFFGVYDGHGGH 74
Query: 160 QVAKFCAERMHEVIAEEWDR--ERVCSD-----WQRRWEVAFSSGFERTDNEV------- 205
+VA +C +R+H +AEE +R + +C Q +W+ F+S F D E+
Sbjct: 75 KVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRA 134
Query: 206 -------LTEAAAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDR 258
+ EA A E VGSTAVV ++ I+ SNCGDSRAVL RG E +PL+VD KPDR
Sbjct: 135 VVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDR 194
Query: 259 QDELERIEGAGGRVINWNGARVFGVLAMSRAIG 291
+DE RIE AGG+VI W GARVFGVLAMSR+IG
Sbjct: 195 EDEYARIENAGGKVIQWQGARVFGVLAMSRSIG 227
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 22/213 (10%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDGHGGS 159
WG S+ G R EMEDA V P F+ + G S S ++ HFFGVYDGHGG
Sbjct: 29 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTG-HFFGVYDGHGGH 87
Query: 160 QVAKFCAERMHEVIAEEWDR--ERVCSD-----WQRRWEVAFSSGFERTDNEV------- 205
+VA +C +R+H +AEE +R + +C Q +W+ F+S F D E+
Sbjct: 88 KVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRA 147
Query: 206 -------LTEAAAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDR 258
+ EA A E VGSTAVV ++ I+ SNCGDSRAVL RG E +PL+VD KPDR
Sbjct: 148 VVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDR 207
Query: 259 QDELERIEGAGGRVINWNGARVFGVLAMSRAIG 291
+DE RIE AGG+VI W GARVFGVLAMSR+IG
Sbjct: 208 EDEYARIENAGGKVIQWQGARVFGVLAMSRSIG 240
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 127/215 (59%), Gaps = 26/215 (12%)
Query: 100 WGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDGHGGS 159
WG S+ G R EMEDA V P F+ + G S S ++ HFFGVYDGHGG
Sbjct: 19 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTG-HFFGVYDGHGGH 77
Query: 160 QVAKFCAERMHEVIAEEWDRERVCSDWQRR---------WEVAFSSGFERTDNEV----- 205
+VA +C +R+H +AEE ER+ + +R W+ F+S F D E+
Sbjct: 78 KVADYCRDRLHFALAEEI--ERIKDELSKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIG 135
Query: 206 ---------LTEAAAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKP 256
+ EA A E VGSTAVV ++ I+ SNCGDSRAVL RG E +PL+VD KP
Sbjct: 136 RAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKP 195
Query: 257 DRQDELERIEGAGGRVINWNGARVFGVLAMSRAIG 291
DR+DE RIE AGG+VI W GARVFGVLAMSR+IG
Sbjct: 196 DREDEYARIENAGGKVIQWQGARVFGVLAMSRSIG 230
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 97/200 (48%), Gaps = 25/200 (12%)
Query: 96 KGVTWGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDG 155
G+ +GL+S+ G R EMEDA T + G S + FF VYDG
Sbjct: 20 NGLRYGLSSMQGWRVEMEDAHTAVIGLPSG------------------LESWSFFAVYDG 61
Query: 156 HGGSQVAKFCAERMHEVIAEEWD-RERVCSDWQRRWEVAFSSGFERTDNE--VLTEAA-A 211
H GSQVAK+C E + + I D + + + +GF D V++E
Sbjct: 62 HAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHG 121
Query: 212 PEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGR 271
+ GSTAV V++S NCGDSR +LCR + T D KP E ERI+ AGG
Sbjct: 122 ADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGS 181
Query: 272 VINWNGARVFGVLAMSRAIG 291
V+ RV G LA+SRA+G
Sbjct: 182 VMI---QRVNGSLAVSRALG 198
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 97/200 (48%), Gaps = 25/200 (12%)
Query: 96 KGVTWGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDG 155
G+ +GL+S+ G R EMEDA T + G S + FF VYDG
Sbjct: 20 NGLRYGLSSMQGWRVEMEDAHTAVIGLPSG------------------LESWSFFAVYDG 61
Query: 156 HGGSQVAKFCAERMHEVIAEEWD-RERVCSDWQRRWEVAFSSGFERTDNE--VLTEAA-A 211
H GSQVAK+C E + + I D + + + +GF D V++E
Sbjct: 62 HAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHG 121
Query: 212 PEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGR 271
+ GSTAV V++S NCGDSR +LCR + T D KP E ERI+ AGG
Sbjct: 122 ADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGS 181
Query: 272 VINWNGARVFGVLAMSRAIG 291
V+ RV G LA+SRA+G
Sbjct: 182 VMI---QRVNGSLAVSRALG 198
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 39/202 (19%)
Query: 101 GLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDGHGGSQ 160
G S IG+R+E ED F T + +F VYDGHGG
Sbjct: 11 GCASQIGKRKENEDRF----DFAQLT------------------DEVLYFAVYDGHGGPA 48
Query: 161 VAKFCAERMHEVIAEEWDRERVCSDWQRRWEVAFSSGFERTDNEVLTEA-----AAPEMV 215
A FC M + I + +E+ E + F D + A A
Sbjct: 49 AADFCHTHMEKCIMDLLPKEK-------NLETLLTLAFLEIDKAFSSHARLSADATLLTS 101
Query: 216 GSTAVVVVL-SGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGRVIN 274
G+TA V +L G +++ ++ GDSRA+LCR + + LT+D P+R+DE ERI+ GG +
Sbjct: 102 GTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGG-FVA 160
Query: 275 WNG---ARVFGVLAMSRAIGFL 293
WN V G LAM+R+IG L
Sbjct: 161 WNSLGQPHVNGRLAMTRSIGDL 182
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 29/197 (14%)
Query: 101 GLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDGHGGSQ 160
G S IG+R+E ED ++ D V +F VYDGHGG
Sbjct: 125 GCASQIGKRKENEDRFD-----FAQLTDEV-----------------LYFAVYDGHGGPA 162
Query: 161 VAKFCAERMHEVIAEEWDRERVCSDWQRRWEVAFSSGFERTDNEVLTEAAAPEMVGSTAV 220
A FC M + I + +E+ + F + + L+ A G+TA
Sbjct: 163 AADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAF--SSHARLSADATLLTSGTTAT 220
Query: 221 VVVL-SGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGRVINWNG-- 277
V +L G +++ ++ GDSRA+LCR + + LT+D P+R+DE ERI+ GG + WN
Sbjct: 221 VALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGG-FVAWNSLG 279
Query: 278 -ARVFGVLAMSRAIGFL 293
V G LAM+R+IG L
Sbjct: 280 QPHVNGRLAMTRSIGDL 296
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 25/160 (15%)
Query: 149 FFGVYDGHGGSQVAKFCAERMHEVIAEEWDRERVCSDWQRRWEVAFSSGFERTDNEVLTE 208
FF VYDGHGG++VA++C+ + + + V + ++ +E A F D +L E
Sbjct: 53 FFAVYDGHGGAEVAQYCSLHLPTFL------KTVEAYGRKEFEKALKEAFLGFDATLLQE 106
Query: 209 AAAPEMV-----------------GSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLT 251
E+ G TAVV +L G + +N GDSR V+CR + + ++
Sbjct: 107 KVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGKALEMS 166
Query: 252 VDQKPDRQDELERIEGAGGRVINWNGARVFGVLAMSRAIG 291
D KP+ E +RIE AGGRV +G RV G L +SRAIG
Sbjct: 167 FDHKPEDTVEYQRIEKAGGRV-TLDG-RVNGGLNLSRAIG 204
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 97/206 (47%), Gaps = 32/206 (15%)
Query: 96 KGVTWGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPGSRSCGEISPIHFFGVYDG 155
G+ +GL+S+ G R EMEDA T + G P + FF VYDG
Sbjct: 22 NGLRYGLSSMQGWRVEMEDAHTAVVGI-------------PHG-----LEDWSFFAVYDG 63
Query: 156 HGGSQVAKFCAERMHEVIAEEWDRERVCSDWQRRWEVA-------FSSGFERTDNEVLTE 208
H GS+VA +C+ + E I D R E++ +GF + D +
Sbjct: 64 HAGSRVANYCSTHLLEHITTNEDF-RAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNF 122
Query: 209 A---AAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERI 265
+ + GSTAV V++S I NCGDSRAVL R + T D KP E ERI
Sbjct: 123 SDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERI 182
Query: 266 EGAGGRVINWNGARVFGVLAMSRAIG 291
+ AGG V+ RV G LA+SRA+G
Sbjct: 183 QNAGGSVMI---QRVNGSLAVSRALG 205
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 19/140 (13%)
Query: 149 FFGVYDGHGGSQVAKFCAERMH-EVIAEEWDRERVCSDWQRRWEVAFS---SGFERTDNE 204
+GV++G+ G++V F A+R+ E++ + + E +D +R AF F + ++
Sbjct: 66 LYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDD 125
Query: 205 VLTEAAAPEMV-----------GSTAVVVVLSGCQIITSNCGDSRAVLCR----GTETIP 249
L E A+ ++ G+ AVV VL ++ +N G +RA+LC+ G +
Sbjct: 126 ALAEKASLQLERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQ 185
Query: 250 LTVDQKPDRQDELERIEGAG 269
L VD + +DEL R+ G
Sbjct: 186 LNVDHTTENEDELFRLSQLG 205
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 84/220 (38%), Gaps = 49/220 (22%)
Query: 78 LTVAVTPTARLMCVGRDNKGVTWGLTSVIGRRREMEDAVTVMPGFMSRTCDHVGGCTAPG 137
LT V PT + + + IG R+ ED T+ P + PG
Sbjct: 2 LTXDVPPTIHVPLPPTSYPAFDAAIFTDIGGRKHQEDRFTLCPQLV------------PG 49
Query: 138 SRSCGEISPIHFFGVYDGHGGSQVAKFCAERMHEVIAEE------WDR--ERVCSD---- 185
C FFGV+DG V F +E + +++ + W E + SD
Sbjct: 50 RDDCA------FFGVFDG----TVGDFASENVKDLVVPQLISSPAWQEVTEXLRSDVPAT 99
Query: 186 -----WQRRWEVAFSSGFERTDNEVLT--EAAAPEMVGSTAVVVVLSGCQIITSNCGDSR 238
+ + A ++ DNE++ E + ST+V VL+ + + GDSR
Sbjct: 100 EVDEKLPQLLDQAVDDXYKNADNELVKXCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSR 159
Query: 239 AVLCRGTETIP------LTVDQKPDRQDELERIEGAGGRV 272
+ G ET LTVD KPD E RI GG V
Sbjct: 160 --IAXGVETPNGLNCEFLTVDHKPDXPHEKLRIXRNGGSV 197
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 223 VLSGCQIITS-NCGDSRAVLCRGTETIP-LTVDQKPDRQDELERIEGAGGRVINWNGARV 280
+ +G ++T+ N GDSRA L + L+ D KP+ E RIE AGG V ++ RV
Sbjct: 168 IPAGSFLVTAINIGDSRATLIHSDGGLTRLSKDHKPNHPTEASRIEKAGGSVETFDVPRV 227
Query: 281 FGVLAMSRAIG 291
GVLA+SRA G
Sbjct: 228 DGVLALSRAFG 238
>pdb|2POM|A Chain A, Tab1 With Manganese Ion
Length = 372
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 38/159 (23%)
Query: 149 FFGVYDGHGGSQVAKFCAERMH-EVIAEEWDRERVCSDWQRRWEVAF---SSGFERTDNE 204
+GV++G+ G++V F A+R+ E++ + + E +D +R AF F + ++
Sbjct: 66 LYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDD 125
Query: 205 VLTEAAA-----PEMV-------------------------GSTAVVVVLSGCQIITSNC 234
L E A+ PE V G+ AVV VL ++ +N
Sbjct: 126 ALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANV 185
Query: 235 GDSRAVLCR----GTETIPLTVDQKPDRQDELERIEGAG 269
G +RA+LC+ G + L VD + +DEL R+ G
Sbjct: 186 GTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLG 224
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 38/159 (23%)
Query: 149 FFGVYDGHGGSQVAKFCAERMH-EVIAEEWDRERVCSDWQRRWEVAF---SSGFERTDNE 204
+GV++G+ G++V F A+R+ E++ + + E +D +R AF F + ++
Sbjct: 64 LYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDD 123
Query: 205 VLTEAAA-----PEMV-------------------------GSTAVVVVLSGCQIITSNC 234
L E A+ PE V G+ AVV VL ++ +N
Sbjct: 124 ALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANV 183
Query: 235 GDSRAVLCR----GTETIPLTVDQKPDRQDELERIEGAG 269
G +RA+LC+ G + L VD + +DEL R+ G
Sbjct: 184 GTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLG 222
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 193 AFSSGFERTDNEVLTEAAAPE-------------MVGSTAVVVVLSGCQIITSNCGDSRA 239
A + F+R DN++ EA + G+TA V + G + +N GDSRA
Sbjct: 164 ALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRA 223
Query: 240 VLCRGTE-----TIPLTVDQKPDRQDELERI-----EGAGGRVINWNGARVFGVLAMSRA 289
+L E + L+ D + EL+R+ + V+ + R+ G+L RA
Sbjct: 224 MLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQD--RLLGLLMPFRA 281
Query: 290 IG 291
G
Sbjct: 282 FG 283
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 193 AFSSGFERTDNEVLTEAAAPE-------------MVGSTAVVVVLSGCQIITSNCGDSRA 239
A + F+R DN++ EA + G+TA V + G + +N GDSRA
Sbjct: 164 ALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRA 223
Query: 240 VLCRGTE-----TIPLTVDQKPDRQDELERI-----EGAGGRVINWNGARVFGVLAMSRA 289
+L E + L+ D + E+ER+ + V+ + R+ G+L RA
Sbjct: 224 MLGVQEEDGSWSAVTLSNDHNAQNEREVERLKLEHPKNEAKSVVKQD--RLLGLLMPFRA 281
Query: 290 IG 291
G
Sbjct: 282 FG 283
>pdb|2IRM|A Chain A, Crystal Structure Of Mitogen-Activated Protein Kinase
Kinase Kinase 7 Interacting Protein 1 From Anopheles
Gambiae
Length = 358
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 181 RVCSDWQRRWEVA--FSSGFERTDNEVLTEAAAPEMVGSTAVVVVLSGCQIITSNCGDSR 238
+ +D ++E++ F + ++ D+ L A + VGS+AV+ ++ + N G+ R
Sbjct: 122 HLSADGMNQYEISQQFENVLQKLDS--LNNALS---VGSSAVLALIHRSHLYLGNIGNCR 176
Query: 239 AVLCRGTETIPLTVDQKPDRQDELERIEGA-----GGRVINWNGARVFGVLAMSRAIG 291
A+LC+ E LTV Q + L E A G N+ G ++ + +G
Sbjct: 177 ALLCKTDEHDTLTVTQLSVDHNLLNAEEAARLFRLGLMAQNFEGVPLYSTRCIGNYLG 234
>pdb|3D8K|A Chain A, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|B Chain B, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|C Chain C, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|D Chain D, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
Length = 377
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 229 IITSNCGDSRAVLCRGTETIPLTVDQKPDRQDELERIEGAGGRVINWNGARVF-GVLAMS 287
I ++ G+SR VL G I L+ E R++ AGG NG + GV+ +
Sbjct: 168 IHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTVNGELLLGGVVPXT 227
Query: 288 RAIG 291
RA G
Sbjct: 228 RAFG 231
>pdb|3AER|A Chain A, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|C Chain C, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AET|A Chain A, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AET|C Chain C, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEU|A Chain A, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEU|C Chain C, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 436
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 93 RDNKGVTWGLTSVIGRRREMEDAVTVMPGFMSRTCDHV 130
R K V GLTS++ R+M+DA ++ G SRTC H+
Sbjct: 31 RGQKAVFCGLTSIVWLHRKMQDAFFLVVG--SRTCAHL 66
>pdb|3AEQ|A Chain A, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|C Chain C, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 437
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 93 RDNKGVTWGLTSVIGRRREMEDAVTVMPGFMSRTCDHV 130
R K V GLTS++ R+M+DA ++ G SRTC H+
Sbjct: 32 RGQKAVFCGLTSIVWLHRKMQDAFFLVVG--SRTCAHL 67
>pdb|3AEK|A Chain A, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEK|C Chain C, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 437
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 93 RDNKGVTWGLTSVIGRRREMEDAVTVMPGFMSRTCDHV 130
R K V GLTS++ R+M+DA ++ G SRTC H+
Sbjct: 32 RGQKAVFCGLTSIVWLHRKMQDAFFLVVG--SRTCAHL 67
>pdb|2CM1|A Chain A, Crystal Structure Of The Catalytic Domain Of Serine
Threonine Protein Phosphatase Pstp In Complex With 2
Manganese Ions
Length = 260
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 149 FFGVYDGHGGSQVAKFCAERMHEVIAEEWDRERVCSDWQRRWEVAFSSGFERTDNEVLTE 208
+ DG GG + ++ + +A D + D + + A +G +V E
Sbjct: 53 LLALADGMGGHAAGEVASQLVIAALAH-LDDDEPGGDLLAKLDAAVRAGNSAIAAQVEME 111
Query: 209 AAAPEM--VGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPLTVD 253
P++ +G+T ++ +G ++ + GDSR L R E +T D
Sbjct: 112 ---PDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKD 155
>pdb|1RQB|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Length = 539
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 138 SRSCGEISPIH--FFGVYDGHGGSQVAKFCAERMHEVIAEEWDRERVCSDWQRR-WEVAF 194
R GE + I ++G +V K E+ + + + + +W+++ E A
Sbjct: 380 KRXTGEFADIXLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSKEAAT 439
Query: 195 SSGFERTDNEVLTEAAAPEMV-------GSTAVVVVLSGCQIITSNCGDSRAVLCRGTET 247
GF TD +VLT A P++ V L+ Q+ GD +++ G T
Sbjct: 440 LKGFNGTDEDVLTYALFPQVAPVFFEHRAEGPHSVALTDAQLKAEAEGDEKSLAVAGPVT 499
Query: 248 IPLTV 252
+ V
Sbjct: 500 YNVNV 504
>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit,
Met186ile
Length = 539
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 138 SRSCGEISPIH--FFGVYDGHGGSQVAKFCAERMHEVIAEEWDRERVCSDWQRR-WEVAF 194
R GE + I ++G +V K E+ + + + + +W+++ E A
Sbjct: 380 KRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSKEAAT 439
Query: 195 SSGFERTDNEVLTEAAAPEMV-------GSTAVVVVLSGCQIITSNCGDSRAVLCRGTET 247
GF TD +VLT A P++ V L+ Q+ GD +++ G T
Sbjct: 440 LKGFNGTDEDVLTYALFPQVAPVFFEHRAEGPHSVALTDAQLKAEAEGDEKSLAVAGPVT 499
Query: 248 IPLTV 252
+ V
Sbjct: 500 YNVNV 504
>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
A59t
Length = 539
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 138 SRSCGEISPIH--FFGVYDGHGGSQVAKFCAERMHEVIAEEWDRERVCSDWQRR-WEVAF 194
R GE + I ++G +V K E+ + + + + +W+++ E A
Sbjct: 380 KRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSKEAAT 439
Query: 195 SSGFERTDNEVLTEAAAPEMV-------GSTAVVVVLSGCQIITSNCGDSRAVLCRGTET 247
GF TD +VLT A P++ V L+ Q+ GD +++ G T
Sbjct: 440 LKGFNGTDEDVLTYALFPQVAPVFFEHRAEGPHSVALTDAQLKAEAEGDEKSLAVAGPVT 499
Query: 248 IPLTV 252
+ V
Sbjct: 500 YNVNV 504
>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Oxaloacetate
Length = 539
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 138 SRSCGEISPIH--FFGVYDGHGGSQVAKFCAERMHEVIAEEWDRERVCSDWQRR-WEVAF 194
R GE + I ++G +V K E+ + + + + +W+++ E A
Sbjct: 380 KRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSKEAAT 439
Query: 195 SSGFERTDNEVLTEAAAPEMV-------GSTAVVVVLSGCQIITSNCGDSRAVLCRGTET 247
GF TD +VLT A P++ V L+ Q+ GD +++ G T
Sbjct: 440 LKGFNGTDEDVLTYALFPQVAPVFFEHRAEGPHSVALTDAQLKAEAEGDEKSLAVAGPVT 499
Query: 248 IPLTV 252
+ V
Sbjct: 500 YNVNV 504
>pdb|3AES|A Chain A, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AES|C Chain C, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 436
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 93 RDNKGVTWGLTSVIGRRREMEDAVTVMPGFMSRTCDHV 130
R K V GLTS++ R+ +DA ++ G SRTC H+
Sbjct: 31 RGQKAVFCGLTSIVWLHRKXQDAFFLVVG--SRTCAHL 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,210,635
Number of Sequences: 62578
Number of extensions: 324483
Number of successful extensions: 640
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 44
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)