BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021895
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 99/240 (41%), Gaps = 43/240 (17%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
V CPD VGIVAK+S +AS G I A F+ R E D + + + E
Sbjct: 26 VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
F +++ F+ R+ D K +V + AS++ HCL D L+ W +L +I CVISNH
Sbjct: 86 FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQPVPLQ 220
+ +E H IPY+++ + D +VLARY Q +P Q
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ 197
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVG 280
R Y VINIHH LPSF G KP Q
Sbjct: 198 ------------------------------LCREYAHQVINIHHSFLPSFVGAKPYHQAS 227
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 89/236 (37%), Gaps = 42/236 (17%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD GIV+ +S + G NIL A + + F+ R F P + F
Sbjct: 13 CPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFXRVVFNAAAKVIPLASLRTGFGV 72
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
++ F D + + KV +L S+ +HCL D LY W+ G L T ++SNH R
Sbjct: 73 IAAKFTXG---WHXRDRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSNHPRE 129
Query: 169 PNSHVIRFLERHGIP-YHYLCAKXXXXXXXXXXXV----QNTDFLVLARYMQPVPLQKEA 223
S + IP YH+ K +TD +VLARY Q
Sbjct: 130 TFSG----FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQ-------- 177
Query: 224 XXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
ILS + INIHH LP FKG KP Q
Sbjct: 178 ----------------------ILSDEXSARLAGRCINIHHSFLPGFKGAKPYHQA 211
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 99/235 (42%), Gaps = 44/235 (18%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
C D GIV+++S + + G NI+ A+ F E + F+ R P+ + + F K
Sbjct: 14 CQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFXRVSVEI-PVAGVND-FNSAFGK 71
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
+ + +NA P D K KV + SK +HCL D LY + G+L E+ +ISNH R
Sbjct: 72 VVEKYNAEWWFR--PRTDRK-KVVIXVSKFDHCLGDLLYRHRLGELDXEVVGIISNHPRE 128
Query: 169 PNSHVIRFLERHGIPYHYL----CAKXXXXXXXXXXXVQN-TDFLVLARYMQPVPLQKEA 223
S + IP+HYL K Q+ D +VLARY Q +
Sbjct: 129 ALSVSL----VGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYXQILS----- 179
Query: 224 XXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
+ LSG+ INIHH LP FKG KP Q
Sbjct: 180 -----------------DDLSAFLSGR--------CINIHHSFLPGFKGAKPYHQ 209
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 91/238 (38%), Gaps = 47/238 (19%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
CP G VA + + + VF + F+ R F D + + +F
Sbjct: 17 CPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREF 76
Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
+++ F R + D+ + KV + SK EHCL D L+ W+ G+L +I ++SNH
Sbjct: 77 EPIAERF---RXQWAIHDVAARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHP 133
Query: 166 DRGPNSHVIRFLERHGIPYHY--LCAKXXXXXXXXXXXVQNT---DFLVLARYMQPVPLQ 220
D P +HG+P+ + + A V T + ++LARY Q
Sbjct: 134 DFAP------LAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYXQ----- 182
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
+LS + INIHH LP FKG KP Q
Sbjct: 183 -------------------------VLSPEASARLANRAINIHHSFLPGFKGAKPYHQ 215
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
Length = 286
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 93/239 (38%), Gaps = 50/239 (20%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CP +G V ++ + + + F + F+ R EF + P + DE F+
Sbjct: 15 CPSXLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-----RQP-DDFDEAGFR 68
Query: 109 --LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
L++ A + + + KV + SK +HCL D LY + G+L ++ V+SNH
Sbjct: 69 AGLAERSEAFGXAFELTAPNHRPKVVIXVSKADHCLNDLLYRQRIGQLGXDVVAVVSNHP 128
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQPVPLQ 220
D P +H H IPY++ +Q + ++LARY Q
Sbjct: 129 DLEPLAHW------HKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYXQ----- 177
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
+LS + R INIHH LLP FKG KP Q
Sbjct: 178 -------------------------VLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQA 211
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
F ILSG F++ + ++NIH LLPSFKG +Q
Sbjct: 88 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQ 123
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
F ILSG F++ + ++NIH LLPSFKG +Q
Sbjct: 88 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQ 123
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
F ILSG F++ + +NIH LLPSFKG +Q
Sbjct: 88 FXRILSGPFVQKWNGKXLNIHPSLLPSFKGSNAHEQ 123
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
F ILSG F++ + ++NIH LLPSFKG +Q
Sbjct: 99 FMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQ 134
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF 282
F ILS FL+ + VINIH L+P+F+G KQ F
Sbjct: 89 FXRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEF 128
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 39/155 (25%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI------P 183
++ VL S L L G +EG++P + VIS+ +++ + R G+ P
Sbjct: 24 RIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDR---ADAYGLERARRAGVDALHMDP 80
Query: 184 YHYLCAKXXXXXXXXXXXVQNTDFLVLARYMQPVPLQKEAXXXXXXXXXXXXXXXXXXXF 243
Y D + LA YM+
Sbjct: 81 AAYPSRTAFDAALAERLQAYGVDLVCLAGYMR---------------------------- 112
Query: 244 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
++ G L ++ ++NIH LLP+F G + +Q
Sbjct: 113 --LVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQ 145
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278
F IL KF+ + +INIH LLPSFKG +Q
Sbjct: 91 FMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQ 126
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 246 ILSGKFLRSYGKDVINIHHGLLPSFKG 272
+LSG+F+ Y ++NIH LLP F G
Sbjct: 98 LLSGRFIAPYEGRILNIHPSLLPLFPG 124
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279
+ +IL K L ++ +N+H LLP ++G P ++
Sbjct: 89 YGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRA 125
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|B Chain B, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|C Chain C, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|D Chain D, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
Length = 317
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 275
F I+ + L + IN+H LLP +GG P
Sbjct: 91 FGQIVPNEILEAPKYGCINVHASLLPELRGGAP 123
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
F ILS F+ Y ++NIH LLP + G
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPG 117
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
F ILS F+ Y ++NIH LLP + G
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPG 117
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
F ILS F+ Y ++NIH LLP + G
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPG 117
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKG 272
F ILS F+ Y ++NIH LLP + G
Sbjct: 88 FMRILSPAFVSHYAGRLLNIHPSLLPKYPG 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,200,828
Number of Sequences: 62578
Number of extensions: 302799
Number of successful extensions: 770
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 25
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)