Query 021895
Match_columns 306
No_of_seqs 254 out of 2012
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0788 PurU Formyltetrahydrof 100.0 4.1E-61 8.8E-66 447.8 22.5 215 36-288 1-220 (287)
2 TIGR00655 PurU formyltetrahydr 100.0 1E-54 2.2E-59 407.8 24.9 209 43-289 1-215 (280)
3 PRK13010 purU formyltetrahydro 100.0 5.4E-54 1.2E-58 404.6 24.9 214 38-289 5-224 (289)
4 PLN02828 formyltetrahydrofolat 100.0 2.2E-51 4.8E-56 384.0 22.5 201 59-289 1-202 (268)
5 PRK13011 formyltetrahydrofolat 100.0 3.7E-50 8E-55 377.7 25.8 212 36-286 1-217 (286)
6 PRK06027 purU formyltetrahydro 100.0 4.5E-50 9.8E-55 376.7 25.4 211 40-288 4-219 (286)
7 COG0299 PurN Folate-dependent 100.0 3.3E-33 7.2E-38 251.5 13.9 126 129-287 1-132 (200)
8 KOG3076 5'-phosphoribosylglyci 100.0 5.9E-30 1.3E-34 229.5 12.4 129 127-288 5-141 (206)
9 PLN02331 phosphoribosylglycina 100.0 5E-28 1.1E-32 219.0 14.4 117 130-279 1-127 (207)
10 TIGR00639 PurN phosphoribosylg 100.0 1.1E-27 2.4E-32 213.7 14.8 122 129-283 1-128 (190)
11 PRK05647 purN phosphoribosylgl 99.9 2.3E-26 5E-31 206.5 13.3 125 128-285 1-131 (200)
12 PLN02285 methionyl-tRNA formyl 99.9 4.3E-25 9.4E-30 211.6 12.4 134 125-288 3-147 (334)
13 PF00551 Formyl_trans_N: Formy 99.9 2.7E-23 5.9E-28 182.1 11.4 125 129-286 1-131 (181)
14 COG0223 Fmt Methionyl-tRNA for 99.9 7.5E-22 1.6E-26 188.4 10.3 117 128-283 1-128 (307)
15 PRK06988 putative formyltransf 99.8 5.7E-20 1.2E-24 174.6 12.1 116 128-282 2-125 (312)
16 TIGR00460 fmt methionyl-tRNA f 99.8 1.5E-19 3.2E-24 171.5 12.1 115 129-282 1-126 (313)
17 PRK00005 fmt methionyl-tRNA fo 99.8 1.9E-19 4.1E-24 170.1 11.5 117 129-284 1-128 (309)
18 cd04893 ACT_GcvR_1 ACT domains 99.8 1.4E-18 3E-23 133.7 9.2 71 42-116 1-71 (77)
19 PRK08125 bifunctional UDP-gluc 99.7 6.5E-18 1.4E-22 173.1 12.4 115 129-282 1-123 (660)
20 COG3830 ACT domain-containing 99.7 5.9E-18 1.3E-22 136.3 6.0 75 40-116 1-75 (90)
21 cd04875 ACT_F4HF-DF N-terminal 99.7 1.3E-16 2.7E-21 120.6 9.6 72 44-115 1-72 (74)
22 cd04872 ACT_1ZPV ACT domain pr 99.7 5E-16 1.1E-20 121.3 8.8 74 42-117 1-74 (88)
23 PRK07579 hypothetical protein; 99.6 8.9E-16 1.9E-20 142.9 10.1 110 128-284 1-113 (245)
24 PRK00194 hypothetical protein; 99.6 1.1E-15 2.3E-20 119.3 7.1 76 40-117 1-76 (90)
25 cd04870 ACT_PSP_1 CT domains f 99.6 3E-15 6.5E-20 113.9 8.5 69 44-115 1-69 (75)
26 PF13740 ACT_6: ACT domain; PD 99.6 1.6E-15 3.4E-20 116.3 7.0 72 41-116 1-72 (76)
27 cd04869 ACT_GcvR_2 ACT domains 99.6 1.2E-14 2.7E-19 110.2 9.1 72 44-116 1-76 (81)
28 PRK11589 gcvR glycine cleavage 99.5 1.2E-13 2.6E-18 124.2 11.8 73 40-116 6-78 (190)
29 PRK11589 gcvR glycine cleavage 99.2 6.7E-11 1.5E-15 106.5 8.7 74 42-116 95-172 (190)
30 cd04871 ACT_PSP_2 ACT domains 99.1 1.1E-10 2.4E-15 91.9 4.5 69 44-116 1-79 (84)
31 KOG3082 Methionyl-tRNA formylt 98.9 7.5E-10 1.6E-14 106.4 4.1 118 128-286 6-133 (338)
32 PF01842 ACT: ACT domain; Int 98.8 3.3E-08 7.1E-13 71.0 7.5 64 43-110 1-65 (66)
33 COG2716 GcvR Glycine cleavage 98.7 3.4E-08 7.3E-13 88.4 5.6 71 42-116 5-75 (176)
34 cd04925 ACT_ACR_2 ACT domain-c 98.5 7.7E-07 1.7E-11 68.0 7.8 46 44-91 2-47 (74)
35 COG2716 GcvR Glycine cleavage 98.3 2.1E-06 4.6E-11 77.0 7.1 77 39-116 89-169 (176)
36 PF13291 ACT_4: ACT domain; PD 98.2 8.7E-06 1.9E-10 62.0 8.2 67 40-110 4-70 (80)
37 cd04873 ACT_UUR-ACR-like ACT d 98.1 2.4E-05 5.1E-10 56.7 8.5 49 44-94 2-50 (70)
38 CHL00100 ilvH acetohydroxyacid 98.1 1.2E-05 2.5E-10 72.1 7.4 73 41-115 1-73 (174)
39 PRK08577 hypothetical protein; 98.1 2.5E-05 5.5E-10 66.1 9.0 75 35-109 49-123 (136)
40 cd04886 ACT_ThrD-II-like C-ter 98.0 3E-05 6.4E-10 55.7 6.7 49 45-93 1-52 (73)
41 cd04888 ACT_PheB-BS C-terminal 97.9 3.8E-05 8.2E-10 57.0 7.1 50 44-94 2-51 (76)
42 cd04899 ACT_ACR-UUR-like_2 C-t 97.9 0.00015 3.1E-09 53.2 9.5 48 44-93 2-49 (70)
43 cd04928 ACT_TyrKc Uncharacteri 97.8 0.00015 3.2E-09 56.0 8.6 64 43-108 2-65 (68)
44 cd04874 ACT_Af1403 N-terminal 97.8 0.00013 2.8E-09 52.5 7.9 61 44-108 2-62 (72)
45 PRK03381 PII uridylyl-transfer 97.8 7.6E-05 1.7E-09 79.5 9.4 70 40-111 597-667 (774)
46 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.8 0.00017 3.7E-09 52.5 8.4 65 43-111 1-65 (79)
47 cd04887 ACT_MalLac-Enz ACT_Mal 97.8 0.00019 4.1E-09 53.2 8.8 62 45-111 2-63 (74)
48 cd04909 ACT_PDH-BS C-terminal 97.8 7.7E-05 1.7E-09 54.9 6.5 63 43-108 2-64 (69)
49 cd04902 ACT_3PGDH-xct C-termin 97.8 7.2E-05 1.6E-09 54.8 6.3 60 45-108 2-61 (73)
50 cd04878 ACT_AHAS N-terminal AC 97.7 0.00014 3.1E-09 52.0 6.8 62 44-107 2-63 (72)
51 cd04927 ACT_ACR-like_2 Second 97.7 0.0004 8.7E-09 53.5 9.5 35 43-77 1-35 (76)
52 cd04900 ACT_UUR-like_1 ACT dom 97.7 0.0004 8.7E-09 52.5 9.0 47 44-91 3-49 (73)
53 cd04876 ACT_RelA-SpoT ACT dom 97.6 0.00018 3.8E-09 49.4 6.2 49 45-94 1-49 (71)
54 PRK04435 hypothetical protein; 97.6 0.00026 5.7E-09 61.3 8.5 69 38-107 65-133 (147)
55 cd04879 ACT_3PGDH-like ACT_3PG 97.6 0.00036 7.8E-09 49.6 7.6 60 45-108 2-61 (71)
56 KOG2452 Formyltetrahydrofolate 97.6 0.00012 2.5E-09 75.0 6.4 127 129-289 1-132 (881)
57 COG1707 ACT domain-containing 97.5 0.0011 2.4E-08 60.2 10.6 63 44-109 4-66 (218)
58 cd04903 ACT_LSD C-terminal ACT 97.5 0.00063 1.4E-08 48.6 7.3 60 45-108 2-61 (71)
59 PRK06737 acetolactate synthase 97.5 0.00045 9.8E-09 54.4 6.9 66 41-108 1-66 (76)
60 cd04883 ACT_AcuB C-terminal AC 97.4 0.0012 2.6E-08 48.6 8.4 61 44-108 3-63 (72)
61 cd04926 ACT_ACR_4 C-terminal 97.4 0.0016 3.5E-08 49.3 8.8 35 44-78 3-37 (72)
62 cd04889 ACT_PDH-BS-like C-term 97.3 0.00061 1.3E-08 48.4 5.7 46 45-91 1-46 (56)
63 cd04877 ACT_TyrR N-terminal AC 97.3 0.0013 2.8E-08 49.7 7.8 57 45-110 3-59 (74)
64 PRK11152 ilvM acetolactate syn 97.3 0.0012 2.7E-08 51.9 7.6 67 40-109 1-67 (76)
65 PRK11895 ilvH acetolactate syn 97.3 0.001 2.2E-08 59.1 7.6 67 41-109 1-67 (161)
66 cd02116 ACT ACT domains are co 97.3 0.0017 3.6E-08 42.1 6.9 34 45-78 1-34 (60)
67 cd04901 ACT_3PGDH C-terminal A 97.3 0.00046 1E-08 50.2 4.5 58 45-108 2-59 (69)
68 cd04882 ACT_Bt0572_2 C-termina 97.2 0.0014 2.9E-08 47.0 6.4 59 44-108 1-59 (65)
69 cd04897 ACT_ACR_3 ACT domain-c 97.2 0.00074 1.6E-08 53.0 5.3 34 43-76 2-35 (75)
70 cd04884 ACT_CBS C-terminal ACT 97.2 0.0024 5.1E-08 47.7 7.6 33 45-77 2-34 (72)
71 PRK13562 acetolactate synthase 97.1 0.0017 3.7E-08 52.3 6.8 68 41-109 1-68 (84)
72 cd04908 ACT_Bt0572_1 N-termina 97.1 0.0034 7.4E-08 46.3 7.9 57 44-108 3-59 (66)
73 cd04895 ACT_ACR_1 ACT domain-c 97.1 0.0024 5.2E-08 49.7 7.2 35 43-77 2-36 (72)
74 TIGR00119 acolac_sm acetolacta 97.0 0.0023 4.9E-08 56.6 7.5 66 42-109 1-66 (157)
75 cd04905 ACT_CM-PDT C-terminal 97.0 0.005 1.1E-07 47.0 8.4 65 44-111 3-68 (80)
76 cd04880 ACT_AAAH-PDT-like ACT 97.0 0.0049 1.1E-07 46.3 7.8 31 46-76 3-33 (75)
77 TIGR01693 UTase_glnD [Protein- 96.9 0.0021 4.5E-08 69.1 7.3 59 33-91 770-830 (850)
78 PRK08178 acetolactate synthase 96.9 0.0045 9.8E-08 51.0 7.2 67 40-109 6-72 (96)
79 TIGR00719 sda_beta L-serine de 96.8 0.006 1.3E-07 55.5 8.1 51 42-92 148-198 (208)
80 cd04896 ACT_ACR-like_3 ACT dom 96.6 0.026 5.6E-07 44.3 9.3 33 44-76 2-34 (75)
81 PF13710 ACT_5: ACT domain; PD 96.3 0.013 2.8E-07 44.0 6.2 57 51-109 1-57 (63)
82 cd04894 ACT_ACR-like_1 ACT dom 96.3 0.02 4.4E-07 44.4 7.1 62 44-108 2-66 (69)
83 PRK05092 PII uridylyl-transfer 96.2 0.013 2.7E-07 64.0 7.6 75 35-110 725-804 (931)
84 PRK07334 threonine dehydratase 96.2 0.033 7.1E-07 55.0 9.8 68 38-109 322-392 (403)
85 PRK03381 PII uridylyl-transfer 96.1 0.022 4.7E-07 61.2 8.8 53 37-91 702-754 (774)
86 PRK10872 relA (p)ppGpp synthet 95.9 0.04 8.7E-07 59.3 9.4 71 40-114 664-734 (743)
87 PRK11790 D-3-phosphoglycerate 95.9 0.02 4.4E-07 57.0 6.8 64 39-108 335-398 (409)
88 cd04885 ACT_ThrD-I Tandem C-te 95.8 0.037 8.1E-07 41.2 6.6 30 46-76 2-31 (68)
89 PF13840 ACT_7: ACT domain ; P 95.5 0.017 3.7E-07 43.3 3.6 34 42-75 6-43 (65)
90 TIGR00691 spoT_relA (p)ppGpp s 95.4 0.078 1.7E-06 56.4 9.6 68 40-112 608-675 (683)
91 PRK11092 bifunctional (p)ppGpp 95.4 0.08 1.7E-06 56.6 9.5 70 40-114 624-693 (702)
92 cd04913 ACT_AKii-LysC-BS-like_ 95.4 0.1 2.3E-06 37.5 7.3 66 44-114 3-69 (75)
93 COG4492 PheB ACT domain-contai 95.3 0.069 1.5E-06 46.9 7.2 66 42-108 72-137 (150)
94 PRK05092 PII uridylyl-transfer 94.9 0.12 2.7E-06 56.4 9.6 71 38-110 839-914 (931)
95 PRK03059 PII uridylyl-transfer 94.9 0.2 4.4E-06 54.6 11.0 56 26-83 769-825 (856)
96 TIGR01127 ilvA_1Cterm threonin 94.7 0.12 2.7E-06 50.2 8.1 73 35-108 298-373 (380)
97 PRK13581 D-3-phosphoglycerate 94.7 0.041 8.9E-07 56.4 4.9 64 41-108 451-514 (526)
98 PRK05007 PII uridylyl-transfer 94.6 0.21 4.5E-06 54.6 10.2 53 37-90 696-748 (884)
99 PRK01759 glnD PII uridylyl-tra 94.6 0.2 4.4E-06 54.4 10.1 54 37-91 672-725 (854)
100 PRK04374 PII uridylyl-transfer 94.6 0.14 3E-06 56.0 8.7 63 28-91 674-738 (869)
101 cd04904 ACT_AAAH ACT domain of 94.5 0.17 3.7E-06 38.5 6.8 61 46-111 4-65 (74)
102 TIGR01327 PGDH D-3-phosphoglyc 94.5 0.042 9E-07 56.4 4.3 62 43-108 452-513 (525)
103 cd04931 ACT_PAH ACT domain of 94.4 0.45 9.8E-06 38.3 9.3 69 43-115 15-84 (90)
104 PRK08198 threonine dehydratase 94.2 0.092 2E-06 51.6 5.9 44 33-76 318-361 (404)
105 COG4747 ACT domain-containing 94.0 2.2 4.8E-05 37.2 13.1 121 44-185 5-134 (142)
106 TIGR01693 UTase_glnD [Protein- 93.8 0.33 7.3E-06 52.5 9.6 43 40-83 666-708 (850)
107 PRK03059 PII uridylyl-transfer 93.8 0.38 8.3E-06 52.4 10.1 55 36-91 672-726 (856)
108 PRK05007 PII uridylyl-transfer 93.6 0.16 3.4E-06 55.5 6.7 40 38-77 804-843 (884)
109 PRK00275 glnD PII uridylyl-tra 93.5 0.35 7.7E-06 52.9 9.4 52 38-91 810-861 (895)
110 PRK04374 PII uridylyl-transfer 93.5 0.47 1E-05 52.0 10.2 53 36-90 790-842 (869)
111 cd04892 ACT_AK-like_2 ACT doma 93.5 0.68 1.5E-05 31.9 7.7 34 44-77 2-38 (65)
112 PRK00275 glnD PII uridylyl-tra 93.5 0.29 6.3E-06 53.6 8.6 50 41-91 703-752 (895)
113 COG0440 IlvH Acetolactate synt 93.5 0.72 1.6E-05 41.5 9.6 74 40-115 2-75 (163)
114 PRK08818 prephenate dehydrogen 93.1 0.44 9.4E-06 47.4 8.5 50 42-92 295-345 (370)
115 COG0317 SpoT Guanosine polypho 92.8 0.53 1.2E-05 50.6 9.1 70 39-113 624-693 (701)
116 COG2102 Predicted ATPases of P 92.7 0.85 1.8E-05 42.9 9.3 80 129-211 1-93 (223)
117 PRK06382 threonine dehydratase 92.6 0.46 9.9E-06 47.1 7.9 73 35-108 323-398 (406)
118 PRK01759 glnD PII uridylyl-tra 92.6 0.17 3.8E-06 55.0 5.3 40 38-77 779-818 (854)
119 cd04922 ACT_AKi-HSDH-ThrA_2 AC 92.5 1.5 3.1E-05 31.3 8.5 34 43-76 2-38 (66)
120 COG2150 Predicted regulator of 92.5 0.26 5.7E-06 44.4 5.4 70 35-108 86-157 (167)
121 PRK06545 prephenate dehydrogen 92.4 0.34 7.4E-06 47.1 6.6 37 40-76 288-324 (359)
122 KOG2663 Acetolactate synthase, 92.2 0.24 5.2E-06 47.8 5.1 68 41-110 76-143 (309)
123 cd04906 ACT_ThrD-I_1 First of 91.6 0.76 1.6E-05 35.8 6.5 32 43-76 2-33 (85)
124 cd04929 ACT_TPH ACT domain of 91.5 1.9 4.2E-05 33.3 8.7 60 48-112 6-66 (74)
125 cd04919 ACT_AK-Hom3_2 ACT doma 91.4 1.8 4E-05 31.0 8.0 35 43-77 2-39 (66)
126 PRK06349 homoserine dehydrogen 91.2 1 2.3E-05 45.0 8.7 68 38-110 344-411 (426)
127 PRK09436 thrA bifunctional asp 91.2 3.1 6.8E-05 45.3 12.9 104 39-162 393-504 (819)
128 cd04924 ACT_AK-Arch_2 ACT doma 91.2 2 4.3E-05 30.5 7.9 35 43-77 2-39 (66)
129 PRK08300 acetaldehyde dehydrog 91.1 0.58 1.3E-05 45.5 6.6 72 127-212 3-78 (302)
130 PRK10696 tRNA 2-thiocytidine b 90.6 2.3 4.9E-05 39.6 9.8 79 101-188 11-94 (258)
131 cd04932 ACT_AKiii-LysC-EC_1 AC 90.2 1.7 3.6E-05 33.6 7.2 32 44-75 3-37 (75)
132 cd04937 ACT_AKi-DapG-BS_2 ACT 89.9 2.8 6.1E-05 30.6 7.9 33 43-75 2-37 (64)
133 PRK11899 prephenate dehydratas 89.6 3.2 7E-05 39.8 10.1 68 42-112 194-262 (279)
134 PRK08526 threonine dehydratase 89.4 1.3 2.8E-05 44.3 7.6 43 34-76 318-360 (403)
135 TIGR01761 thiaz-red thiazoliny 89.3 0.68 1.5E-05 45.6 5.4 51 127-184 2-52 (343)
136 cd04912 ACT_AKiii-LysC-EC-like 89.2 2.1 4.6E-05 32.4 7.0 33 43-75 2-37 (75)
137 cd04918 ACT_AK1-AT_2 ACT domai 89.0 4.1 8.9E-05 29.9 8.3 36 42-77 1-38 (65)
138 COG2844 GlnD UTP:GlnB (protein 88.7 2.3 5E-05 46.7 9.3 54 29-83 670-724 (867)
139 cd01994 Alpha_ANH_like_IV This 88.6 3.3 7.1E-05 37.4 8.9 57 130-189 1-66 (194)
140 cd04916 ACT_AKiii-YclM-BS_2 AC 88.6 4.5 9.9E-05 28.7 8.1 35 43-77 2-39 (66)
141 PRK10820 DNA-binding transcrip 88.0 1.3 2.8E-05 45.5 6.7 90 44-152 2-92 (520)
142 COG3978 Acetolactate synthase 87.7 3.9 8.4E-05 33.3 7.7 68 40-110 1-68 (86)
143 cd04930 ACT_TH ACT domain of t 87.6 2.9 6.4E-05 35.1 7.5 63 44-111 43-106 (115)
144 cd04891 ACT_AK-LysC-DapG-like_ 87.2 2.3 4.9E-05 29.0 5.6 28 50-77 9-36 (61)
145 cd04868 ACT_AK-like ACT domain 87.0 2 4.3E-05 28.8 5.1 34 44-77 2-38 (60)
146 TIGR00289 conserved hypothetic 86.9 4.7 0.0001 37.6 9.0 78 129-210 1-91 (222)
147 PRK09466 metL bifunctional asp 86.5 11 0.00024 41.3 13.0 104 38-163 387-499 (810)
148 COG1570 XseA Exonuclease VII, 85.6 4.6 9.9E-05 41.5 8.9 131 81-215 88-234 (440)
149 COG2844 GlnD UTP:GlnB (protein 85.5 3.9 8.5E-05 45.0 8.9 40 39-78 788-827 (867)
150 TIGR02079 THD1 threonine dehyd 85.4 2 4.3E-05 42.9 6.2 45 32-76 315-359 (409)
151 PRK06291 aspartate kinase; Pro 84.8 20 0.00043 36.4 13.1 35 42-76 321-358 (465)
152 TIGR00290 MJ0570_dom MJ0570-re 84.3 6.8 0.00015 36.6 8.8 78 129-210 1-91 (223)
153 PRK08639 threonine dehydratase 84.0 2.6 5.6E-05 42.1 6.3 45 32-76 326-370 (420)
154 PRK10622 pheA bifunctional cho 83.8 6.6 0.00014 39.3 9.1 68 40-112 297-365 (386)
155 cd04935 ACT_AKiii-DAPDC_1 ACT 83.2 4.1 8.8E-05 31.3 5.8 27 49-75 11-37 (75)
156 cd04921 ACT_AKi-HSDH-ThrA-like 83.0 14 0.00029 27.5 8.5 34 43-76 2-38 (80)
157 PF01902 ATP_bind_4: ATP-bindi 82.5 4.1 8.8E-05 37.8 6.6 78 129-210 1-91 (218)
158 cd04936 ACT_AKii-LysC-BS-like_ 82.2 13 0.00028 25.8 7.7 32 44-75 2-36 (63)
159 PF01171 ATP_bind_3: PP-loop f 82.1 9.6 0.00021 33.2 8.5 58 130-188 1-65 (182)
160 cd04923 ACT_AK-LysC-DapG-like_ 81.7 14 0.00029 25.7 7.7 32 44-75 2-36 (63)
161 cd04933 ACT_AK1-AT_1 ACT domai 81.5 6.5 0.00014 30.9 6.5 27 49-75 11-37 (78)
162 COG2061 ACT-domain-containing 81.2 33 0.00072 31.1 11.5 105 40-151 3-110 (170)
163 TIGR03215 ac_ald_DH_ac acetald 80.1 9.2 0.0002 36.9 8.3 70 128-212 1-72 (285)
164 PF00185 OTCace: Aspartate/orn 79.8 4.1 8.8E-05 35.5 5.3 118 128-273 2-126 (158)
165 COG0077 PheA Prephenate dehydr 79.2 18 0.0004 35.1 10.0 70 37-111 191-261 (279)
166 PLN02551 aspartokinase 78.8 33 0.00071 35.8 12.3 85 43-137 367-454 (521)
167 cd04915 ACT_AK-Ectoine_2 ACT d 78.6 21 0.00046 26.4 8.2 34 43-76 3-38 (66)
168 PRK06635 aspartate kinase; Rev 78.5 37 0.0008 33.4 12.1 35 43-77 263-298 (404)
169 PLN02342 ornithine carbamoyltr 78.0 23 0.0005 35.2 10.6 60 199-273 254-313 (348)
170 cd04890 ACT_AK-like_1 ACT doma 78.0 7.3 0.00016 27.8 5.4 26 50-75 11-36 (62)
171 TIGR02432 lysidine_TilS_N tRNA 77.6 13 0.00029 32.1 7.9 58 130-188 1-65 (189)
172 PRK11898 prephenate dehydratas 77.1 18 0.0004 34.6 9.3 67 42-111 196-264 (283)
173 TIGR00656 asp_kin_monofn aspar 76.7 52 0.0011 32.3 12.5 35 42-76 260-297 (401)
174 PRK06635 aspartate kinase; Rev 76.6 14 0.0003 36.3 8.5 35 41-75 339-376 (404)
175 PRK00227 glnD PII uridylyl-tra 76.1 17 0.00036 39.4 9.6 65 41-108 545-611 (693)
176 PF01408 GFO_IDH_MocA: Oxidore 75.7 7.8 0.00017 30.6 5.5 71 129-215 1-73 (120)
177 cd04934 ACT_AK-Hom3_1 CT domai 75.3 8.6 0.00019 29.5 5.4 24 52-75 14-37 (73)
178 TIGR03759 conj_TIGR03759 integ 74.8 24 0.00052 32.9 9.0 58 127-188 108-166 (200)
179 PRK08841 aspartate kinase; Val 74.7 15 0.00033 36.7 8.3 64 39-115 315-378 (392)
180 PRK10660 tilS tRNA(Ile)-lysidi 74.2 12 0.00025 38.0 7.5 61 128-188 15-82 (436)
181 COG3603 Uncharacterized conser 74.0 8.3 0.00018 33.5 5.4 36 42-77 63-101 (128)
182 cd01992 PP-ATPase N-terminal d 73.6 24 0.00052 30.1 8.4 85 130-215 1-107 (185)
183 PRK13814 pyrB aspartate carbam 73.4 23 0.00049 34.6 9.0 117 139-273 136-270 (310)
184 PRK09181 aspartate kinase; Val 72.5 78 0.0017 32.7 13.0 81 42-138 329-412 (475)
185 PLN02696 1-deoxy-D-xylulose-5- 71.4 14 0.00031 38.1 7.4 79 127-211 56-156 (454)
186 PRK07431 aspartate kinase; Pro 71.0 50 0.0011 34.4 11.4 101 44-152 441-546 (587)
187 cd04914 ACT_AKi-DapG-BS_1 ACT 71.0 31 0.00067 25.7 7.4 34 43-76 2-36 (67)
188 TIGR00512 salvage_mtnA S-methy 70.9 31 0.00067 34.1 9.4 57 130-189 147-214 (331)
189 cd04920 ACT_AKiii-DAPDC_2 ACT 70.8 31 0.00066 25.3 7.3 33 43-75 1-36 (63)
190 PLN02819 lysine-ketoglutarate 70.8 1.5E+02 0.0032 34.0 15.5 161 44-212 465-656 (1042)
191 PF03807 F420_oxidored: NADP o 70.0 16 0.00034 28.0 5.8 68 130-212 1-69 (96)
192 PRK05447 1-deoxy-D-xylulose 5- 70.0 14 0.00031 37.3 7.0 81 128-214 1-101 (385)
193 TIGR03646 YtoQ_fam YtoQ family 69.9 14 0.00031 32.7 6.0 109 133-267 3-114 (144)
194 PF10087 DUF2325: Uncharacteri 69.7 18 0.00038 28.7 6.2 51 160-211 3-55 (97)
195 PRK15385 magnesium transport p 69.4 54 0.0012 31.0 10.2 80 40-121 140-221 (225)
196 PRK12483 threonine dehydratase 68.3 14 0.0003 38.6 6.6 43 32-76 335-377 (521)
197 TIGR00656 asp_kin_monofn aspar 67.8 28 0.00061 34.1 8.4 63 39-114 334-399 (401)
198 TIGR01124 ilvA_2Cterm threonin 67.7 9.7 0.00021 39.3 5.4 72 32-108 315-387 (499)
199 TIGR03693 ocin_ThiF_like putat 67.3 21 0.00046 38.4 7.8 77 127-212 128-212 (637)
200 PRK00779 ornithine carbamoyltr 66.8 60 0.0013 31.4 10.3 119 136-273 128-271 (304)
201 COG0673 MviM Predicted dehydro 66.8 21 0.00045 33.3 7.0 72 127-212 2-75 (342)
202 PRK09224 threonine dehydratase 66.7 16 0.00034 37.7 6.6 73 32-108 318-391 (504)
203 COG3283 TyrR Transcriptional r 66.6 16 0.00034 37.6 6.4 91 45-154 3-94 (511)
204 PRK09034 aspartate kinase; Rev 66.6 66 0.0014 32.7 11.0 32 43-74 309-343 (454)
205 PLN02550 threonine dehydratase 66.4 10 0.00023 40.2 5.4 43 32-76 407-449 (591)
206 COG0394 Wzb Protein-tyrosine-p 66.2 19 0.00041 31.1 6.1 81 128-215 2-87 (139)
207 PLN02317 arogenate dehydratase 65.7 44 0.00095 33.9 9.4 32 43-76 286-317 (382)
208 PF00205 TPP_enzyme_M: Thiamin 65.7 5.8 0.00012 32.8 2.7 45 170-214 28-87 (137)
209 PRK10124 putative UDP-glucose 65.2 70 0.0015 32.5 10.9 129 128-289 143-285 (463)
210 PRK14449 acylphosphatase; Prov 65.1 28 0.00061 27.7 6.5 60 101-164 17-76 (90)
211 PF11071 DUF2872: Protein of u 64.1 17 0.00037 32.1 5.4 98 144-267 13-111 (141)
212 TIGR03025 EPS_sugtrans exopoly 63.7 68 0.0015 31.9 10.3 37 127-165 124-161 (445)
213 PRK09436 thrA bifunctional asp 63.2 1.2E+02 0.0026 33.4 12.9 36 41-76 314-352 (819)
214 PF02441 Flavoprotein: Flavopr 62.6 11 0.00025 31.2 4.0 74 129-211 1-80 (129)
215 COG4569 MhpF Acetaldehyde dehy 62.4 28 0.00062 33.3 6.9 54 126-186 2-57 (310)
216 PRK13304 L-aspartate dehydroge 62.0 33 0.00072 32.1 7.4 70 128-213 1-70 (265)
217 PRK14664 tRNA-specific 2-thiou 61.4 26 0.00056 35.0 6.8 58 127-189 4-63 (362)
218 TIGR03590 PseG pseudaminic aci 61.3 61 0.0013 30.3 9.0 67 141-214 20-90 (279)
219 PRK00726 murG undecaprenyldiph 61.0 60 0.0013 30.4 8.9 79 129-214 2-101 (357)
220 TIGR03022 WbaP_sugtrans Undeca 60.6 94 0.002 31.0 10.7 128 128-289 125-271 (456)
221 PRK07431 aspartate kinase; Pro 60.5 1.1E+02 0.0024 31.9 11.6 100 44-152 272-375 (587)
222 TIGR01268 Phe4hydrox_tetr phen 60.4 64 0.0014 33.3 9.6 67 42-112 16-83 (436)
223 PRK07634 pyrroline-5-carboxyla 59.6 31 0.00067 30.9 6.5 68 128-211 4-73 (245)
224 COG0037 MesJ tRNA(Ile)-lysidin 59.5 75 0.0016 29.4 9.2 75 100-188 4-85 (298)
225 PRK08210 aspartate kinase I; R 59.3 51 0.0011 32.5 8.5 63 39-114 336-401 (403)
226 TIGR00657 asp_kinases aspartat 59.2 1.9E+02 0.0042 29.0 12.6 37 41-77 301-339 (441)
227 PRK04284 ornithine carbamoyltr 59.1 1.3E+02 0.0029 29.5 11.3 58 199-273 219-280 (332)
228 COG0345 ProC Pyrroline-5-carbo 59.0 30 0.00066 33.2 6.7 67 128-211 1-69 (266)
229 COG4747 ACT domain-containing 58.9 36 0.00078 29.9 6.4 62 42-110 69-130 (142)
230 PF00708 Acylphosphatase: Acyl 58.9 34 0.00073 26.9 5.9 60 100-163 17-76 (91)
231 PRK06291 aspartate kinase; Pro 58.5 55 0.0012 33.3 8.7 64 40-114 396-462 (465)
232 PRK00907 hypothetical protein; 58.2 78 0.0017 25.9 8.0 66 42-111 17-84 (92)
233 COG0527 LysC Aspartokinases [A 57.7 2.3E+02 0.005 29.2 13.5 101 25-138 280-393 (447)
234 PRK10126 tyrosine phosphatase; 57.3 55 0.0012 27.9 7.4 81 129-215 3-86 (147)
235 PF10686 DUF2493: Protein of u 57.3 45 0.00098 25.7 6.2 59 128-189 3-65 (71)
236 PRK14433 acylphosphatase; Prov 57.3 29 0.00062 27.7 5.2 60 101-164 15-74 (87)
237 PF10727 Rossmann-like: Rossma 57.0 16 0.00035 31.1 4.0 35 126-165 8-43 (127)
238 COG2179 Predicted hydrolase of 56.9 35 0.00077 31.2 6.3 67 140-212 49-117 (175)
239 PRK05472 redox-sensing transcr 56.6 32 0.0007 30.9 6.1 73 126-215 82-157 (213)
240 PRK14447 acylphosphatase; Prov 56.3 43 0.00093 27.1 6.2 61 101-164 18-78 (95)
241 PRK13302 putative L-aspartate 56.1 39 0.00085 31.9 6.8 71 127-213 5-76 (271)
242 COG3453 Uncharacterized protei 56.1 47 0.001 29.1 6.6 74 135-215 12-95 (130)
243 PRK09034 aspartate kinase; Rev 55.1 55 0.0012 33.3 8.1 64 39-113 382-448 (454)
244 PRK09181 aspartate kinase; Val 54.7 61 0.0013 33.5 8.4 64 40-114 400-465 (475)
245 PLN02551 aspartokinase 54.7 61 0.0013 33.9 8.5 65 38-113 441-507 (521)
246 PRK02047 hypothetical protein; 54.5 97 0.0021 25.0 7.9 66 42-112 16-84 (91)
247 TIGR03023 WcaJ_sugtrans Undeca 54.3 1E+02 0.0023 30.7 9.8 86 128-215 128-229 (451)
248 PRK14422 acylphosphatase; Prov 54.2 52 0.0011 26.5 6.3 60 101-164 20-79 (93)
249 PRK13530 arsenate reductase; P 54.0 37 0.00079 28.7 5.7 77 128-212 3-82 (133)
250 PRK01713 ornithine carbamoyltr 53.9 1.4E+02 0.003 29.4 10.5 59 198-273 219-281 (334)
251 PRK00341 hypothetical protein; 53.1 94 0.002 25.1 7.7 64 43-111 18-83 (91)
252 TIGR00657 asp_kinases aspartat 53.0 58 0.0013 32.6 7.8 37 39-75 375-414 (441)
253 TIGR00243 Dxr 1-deoxy-D-xylulo 52.9 66 0.0014 32.8 8.1 78 129-212 2-101 (389)
254 PRK14423 acylphosphatase; Prov 52.9 49 0.0011 26.5 6.0 60 101-164 19-78 (92)
255 PRK11175 universal stress prot 52.7 40 0.00087 31.0 6.2 71 173-264 228-300 (305)
256 PRK00286 xseA exodeoxyribonucl 52.4 2.6E+02 0.0056 28.0 14.1 132 80-215 87-233 (438)
257 PRK14805 ornithine carbamoyltr 52.3 1.3E+02 0.0029 29.1 9.9 120 135-273 122-267 (302)
258 PF04007 DUF354: Protein of un 52.2 1E+02 0.0022 30.5 9.2 76 130-212 2-91 (335)
259 PRK10887 glmM phosphoglucosami 52.1 2.6E+02 0.0056 28.0 12.8 177 42-246 171-363 (443)
260 TIGR01270 Trp_5_monoox tryptop 51.9 87 0.0019 32.7 9.0 63 45-112 34-98 (464)
261 PRK04523 N-acetylornithine car 51.6 2.5E+02 0.0054 27.7 12.3 63 198-273 238-300 (335)
262 cd01987 USP_OKCHK USP domain i 51.5 1.2E+02 0.0025 23.8 8.7 41 173-215 54-96 (124)
263 TIGR02689 ars_reduc_gluta arse 51.5 50 0.0011 27.3 6.0 76 129-212 1-79 (126)
264 PRK02255 putrescine carbamoylt 51.0 1.3E+02 0.0029 29.7 9.8 60 199-273 217-278 (338)
265 cd05017 SIS_PGI_PMI_1 The memb 50.8 93 0.002 25.1 7.4 55 128-190 43-99 (119)
266 PRK06372 translation initiatio 50.4 70 0.0015 30.6 7.5 69 132-210 89-157 (253)
267 PRK14429 acylphosphatase; Prov 50.4 65 0.0014 25.6 6.3 60 101-164 16-75 (90)
268 PRK12562 ornithine carbamoyltr 50.3 2.3E+02 0.0049 28.1 11.3 58 199-270 220-278 (334)
269 TIGR03679 arCOG00187 arCOG0018 50.2 85 0.0018 28.7 7.8 74 133-210 2-92 (218)
270 PF00448 SRP54: SRP54-type pro 50.2 97 0.0021 27.9 8.1 84 130-215 2-94 (196)
271 cd05564 PTS_IIB_chitobiose_lic 49.9 26 0.00056 28.1 3.9 74 173-280 19-95 (96)
272 PTZ00345 glycerol-3-phosphate 49.6 53 0.0011 32.8 6.8 83 127-212 10-101 (365)
273 cd04917 ACT_AKiii-LysC-EC_2 AC 49.4 95 0.0021 22.2 8.3 32 43-76 2-36 (64)
274 PRK14436 acylphosphatase; Prov 49.1 70 0.0015 25.7 6.3 60 101-164 18-77 (91)
275 PRK13376 pyrB bifunctional asp 49.1 1.1E+02 0.0023 32.4 9.3 27 245-273 273-299 (525)
276 PRK14431 acylphosphatase; Prov 49.0 58 0.0013 26.1 5.8 58 102-164 17-75 (89)
277 COG0482 TrmU Predicted tRNA(5- 48.7 47 0.001 33.4 6.3 58 127-188 2-70 (356)
278 PRK14430 acylphosphatase; Prov 48.6 67 0.0014 25.9 6.1 59 102-164 19-77 (92)
279 PRK14665 mnmA tRNA-specific 2- 48.3 75 0.0016 31.6 7.7 58 127-189 4-68 (360)
280 PF03054 tRNA_Me_trans: tRNA m 48.1 36 0.00079 33.9 5.4 57 129-189 1-70 (356)
281 KOG2741 Dimeric dihydrodiol de 47.9 87 0.0019 31.6 8.0 85 125-226 3-91 (351)
282 PRK14440 acylphosphatase; Prov 47.9 69 0.0015 25.7 6.1 60 101-164 17-76 (90)
283 PRK14426 acylphosphatase; Prov 47.5 73 0.0016 25.5 6.2 61 100-164 17-78 (92)
284 TIGR01133 murG undecaprenyldip 47.5 68 0.0015 29.5 6.8 78 129-213 1-99 (348)
285 PRK11391 etp phosphotyrosine-p 47.5 80 0.0017 27.0 6.8 79 129-213 3-84 (144)
286 TIGR00511 ribulose_e2b2 ribose 47.2 1.2E+02 0.0026 29.4 8.7 55 133-189 119-174 (301)
287 PRK14561 hypothetical protein; 47.1 36 0.00077 30.5 4.8 54 129-188 1-57 (194)
288 cd01993 Alpha_ANH_like_II This 47.0 65 0.0014 27.3 6.2 58 130-188 1-67 (185)
289 PRK09424 pntA NAD(P) transhydr 47.0 3.7E+02 0.0079 28.3 12.8 126 43-188 88-215 (509)
290 PRK08192 aspartate carbamoyltr 46.5 1.9E+02 0.0041 28.6 10.1 57 199-272 221-279 (338)
291 PRK14427 acylphosphatase; Prov 46.4 69 0.0015 25.8 5.9 60 101-164 20-79 (94)
292 COG0589 UspA Universal stress 46.4 96 0.0021 24.4 6.8 44 172-215 78-124 (154)
293 COG1921 SelA Selenocysteine sy 46.3 1.1E+02 0.0023 31.4 8.5 81 130-212 134-221 (395)
294 TIGR00658 orni_carb_tr ornithi 46.1 2.4E+02 0.0053 27.3 10.6 120 136-272 124-269 (304)
295 PRK14444 acylphosphatase; Prov 45.6 82 0.0018 25.3 6.2 60 101-164 18-77 (92)
296 PRK14441 acylphosphatase; Prov 45.5 74 0.0016 25.6 5.9 60 101-164 19-78 (93)
297 TIGR00670 asp_carb_tr aspartat 45.3 2E+02 0.0043 27.9 9.9 57 198-273 210-267 (301)
298 PRK14445 acylphosphatase; Prov 45.1 70 0.0015 25.5 5.7 60 101-164 18-77 (91)
299 TIGR00237 xseA exodeoxyribonuc 44.8 3.5E+02 0.0076 27.5 14.2 132 81-215 82-228 (432)
300 cd05565 PTS_IIB_lactose PTS_II 44.7 23 0.0005 29.1 2.9 75 172-280 19-98 (99)
301 PRK00143 mnmA tRNA-specific 2- 44.3 77 0.0017 31.1 7.0 55 129-188 1-70 (346)
302 PF04273 DUF442: Putative phos 43.9 87 0.0019 26.0 6.3 50 133-188 9-64 (110)
303 PRK14320 glmM phosphoglucosami 43.7 2.8E+02 0.0061 27.8 11.0 186 44-263 174-374 (443)
304 PRK03868 glucose-6-phosphate i 43.6 78 0.0017 32.1 7.1 59 127-189 110-174 (410)
305 TIGR01455 glmM phosphoglucosam 43.6 3.5E+02 0.0075 27.1 11.6 174 43-245 173-364 (443)
306 KOG2805 tRNA (5-methylaminomet 43.5 69 0.0015 32.3 6.4 58 127-188 4-74 (377)
307 PRK14437 acylphosphatase; Prov 43.2 81 0.0018 26.4 6.0 60 100-163 36-95 (109)
308 TIGR00177 molyb_syn molybdenum 43.1 82 0.0018 26.7 6.2 44 172-215 31-77 (144)
309 TIGR00524 eIF-2B_rel eIF-2B al 43.0 1.2E+02 0.0026 29.5 8.0 47 139-188 137-185 (303)
310 PF02670 DXP_reductoisom: 1-de 43.0 60 0.0013 28.0 5.3 75 131-211 1-97 (129)
311 CHL00123 rps6 ribosomal protei 42.6 1.8E+02 0.0039 23.5 8.4 42 52-94 23-73 (97)
312 PF06057 VirJ: Bacterial virul 42.5 52 0.0011 30.4 5.2 83 42-147 3-86 (192)
313 cd00293 USP_Like Usp: Universa 42.5 1.4E+02 0.0031 22.3 10.4 36 179-215 67-104 (130)
314 PRK08210 aspartate kinase I; R 42.3 53 0.0012 32.4 5.6 35 42-76 271-306 (403)
315 PRK14438 acylphosphatase; Prov 42.3 82 0.0018 25.2 5.7 61 101-165 17-77 (91)
316 PRK03515 ornithine carbamoyltr 42.0 2.5E+02 0.0054 27.8 10.1 57 199-272 220-280 (336)
317 PRK14428 acylphosphatase; Prov 41.8 1E+02 0.0022 25.2 6.3 60 101-164 22-81 (97)
318 PF01250 Ribosomal_S6: Ribosom 41.8 77 0.0017 24.7 5.4 53 52-107 18-79 (92)
319 COG1184 GCD2 Translation initi 41.8 1.4E+02 0.003 29.6 8.2 49 138-188 128-177 (301)
320 PF08660 Alg14: Oligosaccharid 41.8 1.4E+02 0.003 26.5 7.6 66 204-273 92-164 (170)
321 COG2243 CobF Precorrin-2 methy 41.6 3E+02 0.0065 26.2 10.2 109 99-223 69-185 (234)
322 PRK14450 acylphosphatase; Prov 41.5 92 0.002 24.8 5.9 61 101-164 16-76 (91)
323 TIGR00268 conserved hypothetic 41.4 74 0.0016 29.5 6.1 56 128-188 12-72 (252)
324 PRK14194 bifunctional 5,10-met 41.2 80 0.0017 31.0 6.5 57 174-237 55-118 (301)
325 PRK08335 translation initiatio 41.1 1.6E+02 0.0034 28.6 8.4 49 138-188 119-167 (275)
326 COG3961 Pyruvate decarboxylase 41.0 65 0.0014 34.3 6.1 60 155-215 212-287 (557)
327 PRK14443 acylphosphatase; Prov 41.0 1E+02 0.0023 25.0 6.2 59 102-164 19-78 (93)
328 PLN02748 tRNA dimethylallyltra 40.9 1.8E+02 0.0038 30.3 9.2 108 28-149 8-131 (468)
329 PRK14420 acylphosphatase; Prov 40.7 89 0.0019 24.8 5.7 59 102-164 17-75 (91)
330 PF05088 Bac_GDH: Bacterial NA 40.6 89 0.0019 37.1 7.7 76 39-114 14-108 (1528)
331 PRK14451 acylphosphatase; Prov 40.5 1E+02 0.0022 24.7 6.0 60 101-164 17-76 (89)
332 COG1254 AcyP Acylphosphatases 39.9 1.4E+02 0.003 24.4 6.7 60 100-163 17-76 (92)
333 PRK14166 bifunctional 5,10-met 39.4 82 0.0018 30.6 6.2 30 174-203 52-81 (282)
334 PF01210 NAD_Gly3P_dh_N: NAD-d 39.3 16 0.00036 31.2 1.4 76 130-215 1-80 (157)
335 PRK14169 bifunctional 5,10-met 39.3 90 0.002 30.3 6.5 58 174-237 52-115 (282)
336 cd01988 Na_H_Antiporter_C The 39.2 1.8E+02 0.0039 22.5 11.1 44 172-215 60-105 (132)
337 PRK14425 acylphosphatase; Prov 38.9 1.2E+02 0.0026 24.4 6.2 60 101-164 20-79 (94)
338 PRK14170 bifunctional 5,10-met 38.9 81 0.0018 30.7 6.1 30 174-203 53-82 (284)
339 PRK06552 keto-hydroxyglutarate 38.7 3.2E+02 0.0069 25.2 13.2 120 44-210 15-135 (213)
340 COG0287 TyrA Prephenate dehydr 38.6 1.4E+02 0.003 28.7 7.6 119 128-268 3-127 (279)
341 PRK09536 btuD corrinoid ABC tr 38.6 2E+02 0.0043 29.0 9.0 71 137-213 274-347 (402)
342 PRK14182 bifunctional 5,10-met 38.4 83 0.0018 30.6 6.1 58 174-237 52-115 (282)
343 PRK09084 aspartate kinase III; 37.9 2E+02 0.0043 29.3 9.0 34 42-75 306-342 (448)
344 COG0240 GpsA Glycerol-3-phosph 37.9 75 0.0016 31.7 5.8 76 128-214 1-81 (329)
345 cd01995 ExsB ExsB is a transcr 37.8 2E+02 0.0044 24.4 7.8 79 130-214 1-86 (169)
346 PRK14323 glmM phosphoglucosami 37.7 4.3E+02 0.0093 26.4 13.6 173 42-245 173-359 (440)
347 PRK14452 acylphosphatase; Prov 37.4 1.3E+02 0.0028 25.1 6.3 75 85-164 19-93 (107)
348 PRK14442 acylphosphatase; Prov 36.8 1.1E+02 0.0024 24.4 5.7 60 101-164 18-77 (91)
349 PF02601 Exonuc_VII_L: Exonucl 36.7 2.6E+02 0.0056 26.6 9.1 88 127-215 13-116 (319)
350 PRK14446 acylphosphatase; Prov 36.5 1E+02 0.0022 24.8 5.4 60 102-165 17-76 (88)
351 PRK04998 hypothetical protein; 36.4 2.2E+02 0.0047 22.6 7.4 67 42-113 15-82 (88)
352 TIGR00420 trmU tRNA (5-methyla 36.4 74 0.0016 31.4 5.5 56 129-189 1-71 (352)
353 PRK14804 ornithine carbamoyltr 36.4 2.7E+02 0.0059 27.1 9.4 126 135-273 126-276 (311)
354 PF13727 CoA_binding_3: CoA-bi 36.3 1.1E+02 0.0024 25.1 5.9 53 151-203 99-165 (175)
355 PRK14435 acylphosphatase; Prov 36.2 1.1E+02 0.0024 24.4 5.6 61 101-165 16-76 (90)
356 PRK14188 bifunctional 5,10-met 36.2 1.1E+02 0.0024 29.8 6.6 58 174-237 54-117 (296)
357 PRK14175 bifunctional 5,10-met 36.1 93 0.002 30.2 6.0 58 174-237 54-117 (286)
358 TIGR00166 S6 ribosomal protein 36.1 1.9E+02 0.004 22.9 6.9 40 53-93 18-66 (93)
359 PRK13820 argininosuccinate syn 36.0 1.1E+02 0.0024 31.1 6.7 58 128-189 2-64 (394)
360 PRK05948 precorrin-2 methyltra 35.6 2E+02 0.0042 26.9 7.9 102 98-215 70-181 (238)
361 PF10741 T2SM_b: Type II secre 35.4 2E+02 0.0044 23.2 7.1 56 54-112 17-73 (110)
362 cd01989 STK_N The N-terminal d 35.3 2.4E+02 0.0051 22.7 11.7 39 177-215 74-114 (146)
363 PRK14176 bifunctional 5,10-met 35.3 1.4E+02 0.0029 29.2 7.0 57 174-237 60-123 (287)
364 PRK12446 undecaprenyldiphospho 35.2 1.3E+02 0.0029 29.1 7.0 79 129-214 2-102 (352)
365 PRK07679 pyrroline-5-carboxyla 35.2 1.5E+02 0.0032 27.6 7.1 119 129-270 4-128 (279)
366 COG2910 Putative NADH-flavin r 35.2 1.2E+02 0.0027 28.5 6.4 33 129-167 1-36 (211)
367 PRK14421 acylphosphatase; Prov 35.0 1.6E+02 0.0034 24.2 6.4 60 101-164 18-77 (99)
368 PRK05234 mgsA methylglyoxal sy 35.0 1.5E+02 0.0033 25.7 6.6 40 143-186 65-111 (142)
369 PF05582 Peptidase_U57: YabG p 34.9 39 0.00086 33.1 3.3 40 174-213 122-163 (287)
370 TIGR00561 pntA NAD(P) transhyd 34.8 4.5E+02 0.0097 27.7 11.1 149 42-212 86-255 (511)
371 PRK14448 acylphosphatase; Prov 34.7 1.7E+02 0.0037 23.3 6.5 60 101-164 16-75 (90)
372 PRK05583 ribosomal protein L7A 34.7 2.5E+02 0.0055 23.1 7.6 65 134-211 18-84 (104)
373 PRK14179 bifunctional 5,10-met 34.7 1.2E+02 0.0026 29.5 6.6 58 174-237 54-117 (284)
374 PRK08535 translation initiatio 34.5 2.2E+02 0.0047 27.7 8.3 55 133-189 124-179 (310)
375 PRK14434 acylphosphatase; Prov 34.4 1.6E+02 0.0036 23.6 6.3 59 102-164 17-78 (92)
376 PF09419 PGP_phosphatase: Mito 34.3 1.4E+02 0.0029 26.9 6.4 71 140-212 62-143 (168)
377 PRK14193 bifunctional 5,10-met 34.2 1.1E+02 0.0024 29.8 6.2 57 174-237 54-117 (284)
378 PRK08334 translation initiatio 34.1 1.6E+02 0.0034 29.7 7.4 49 137-188 176-226 (356)
379 PRK00453 rpsF 30S ribosomal pr 34.1 1.5E+02 0.0033 24.0 6.2 52 52-106 19-79 (108)
380 cd06350 PBP1_GPCR_family_C_lik 33.4 3.9E+02 0.0084 24.6 13.0 90 41-150 89-185 (348)
381 TIGR02855 spore_yabG sporulati 33.3 63 0.0014 31.7 4.4 41 174-214 121-163 (283)
382 PRK14189 bifunctional 5,10-met 33.3 1.4E+02 0.003 29.1 6.8 57 174-237 54-117 (285)
383 PF07991 IlvN: Acetohydroxy ac 33.1 69 0.0015 29.0 4.3 74 128-224 4-77 (165)
384 TIGR03590 PseG pseudaminic aci 32.8 3E+02 0.0065 25.7 8.8 79 128-213 170-250 (279)
385 PRK11890 phosphate acetyltrans 32.8 1.3E+02 0.0028 29.7 6.5 79 127-215 21-106 (312)
386 PRK12439 NAD(P)H-dependent gly 32.6 1E+02 0.0022 29.9 5.7 22 126-147 5-27 (341)
387 PRK11133 serB phosphoserine ph 32.5 3.3E+02 0.0071 26.6 9.2 94 41-149 36-134 (322)
388 PRK14190 bifunctional 5,10-met 32.4 1.3E+02 0.0028 29.3 6.3 30 174-203 54-83 (284)
389 PRK12326 preprotein translocas 32.3 58 0.0012 35.9 4.3 138 64-214 337-484 (764)
390 PF02254 TrkA_N: TrkA-N domain 32.0 2.5E+02 0.0053 21.9 7.3 66 132-211 2-69 (116)
391 PRK14432 acylphosphatase; Prov 32.0 1.8E+02 0.0038 23.5 6.2 60 101-164 16-76 (93)
392 PF01408 GFO_IDH_MocA: Oxidore 32.0 76 0.0017 24.9 4.0 64 142-213 54-120 (120)
393 COG0673 MviM Predicted dehydro 32.0 1.2E+02 0.0026 28.1 6.0 68 139-215 56-127 (342)
394 PRK11041 DNA-binding transcrip 32.0 3.2E+02 0.0069 24.6 8.6 39 100-138 6-45 (309)
395 PRK00973 glucose-6-phosphate i 31.8 1E+02 0.0023 31.7 5.9 58 128-189 132-197 (446)
396 PRK07714 hypothetical protein; 31.7 1.7E+02 0.0036 23.6 6.0 59 134-203 19-77 (100)
397 PRK14171 bifunctional 5,10-met 31.6 1.6E+02 0.0035 28.8 6.8 57 174-237 54-117 (288)
398 PRK07742 phosphate butyryltran 31.4 2.9E+02 0.0063 26.6 8.6 78 127-213 14-99 (299)
399 PRK14183 bifunctional 5,10-met 31.4 1.3E+02 0.0029 29.2 6.3 57 174-237 53-116 (281)
400 COG0303 MoeA Molybdopterin bio 31.4 1.1E+02 0.0023 31.3 5.8 72 127-215 175-253 (404)
401 PF00763 THF_DHG_CYH: Tetrahyd 31.3 76 0.0016 26.3 4.1 43 174-219 51-99 (117)
402 PRK06079 enoyl-(acyl carrier p 31.1 1.7E+02 0.0038 26.2 6.7 68 43-114 8-82 (252)
403 PRK14174 bifunctional 5,10-met 31.1 1.3E+02 0.0029 29.3 6.2 57 174-237 53-116 (295)
404 PRK14497 putative molybdopteri 30.9 96 0.0021 32.9 5.6 76 126-215 177-256 (546)
405 PRK00856 pyrB aspartate carbam 30.8 3.8E+02 0.0082 26.1 9.3 119 139-273 135-268 (305)
406 PF00391 PEP-utilizers: PEP-ut 30.7 67 0.0015 24.7 3.4 49 157-213 30-78 (80)
407 PRK12491 pyrroline-5-carboxyla 30.7 1.3E+02 0.0028 28.4 5.9 66 129-211 3-70 (272)
408 PRK03659 glutathione-regulated 30.7 97 0.0021 32.6 5.6 50 128-188 400-450 (601)
409 PRK14167 bifunctional 5,10-met 30.6 1.3E+02 0.0029 29.4 6.2 30 174-203 53-82 (297)
410 COG3494 Uncharacterized protei 30.6 91 0.002 30.5 4.9 66 196-264 58-131 (279)
411 PRK14180 bifunctional 5,10-met 30.5 1.3E+02 0.0029 29.2 6.1 58 174-237 53-116 (282)
412 PRK07283 hypothetical protein; 30.3 2.4E+02 0.0052 22.7 6.7 64 134-211 19-84 (98)
413 PF01008 IF-2B: Initiation fac 30.3 1.3E+02 0.0029 27.9 5.9 73 132-212 110-184 (282)
414 PRK09977 putative Mg(2+) trans 30.2 3.4E+02 0.0074 25.3 8.5 61 42-107 144-204 (215)
415 PF04359 DUF493: Protein of un 30.1 1.3E+02 0.0027 23.5 4.9 66 42-112 10-78 (85)
416 PRK08961 bifunctional aspartat 30.0 7.2E+02 0.016 27.5 12.3 33 43-75 323-358 (861)
417 PRK12571 1-deoxy-D-xylulose-5- 30.0 87 0.0019 33.5 5.1 32 41-72 141-174 (641)
418 PRK14324 glmM phosphoglucosami 29.8 5.9E+02 0.013 25.6 13.3 188 42-263 175-379 (446)
419 cd06363 PBP1_Taste_receptor Li 29.6 5.3E+02 0.011 25.0 13.0 98 42-162 106-211 (410)
420 KOG1201 Hydroxysteroid 17-beta 29.5 2.6E+02 0.0056 27.7 7.9 78 132-216 40-127 (300)
421 PF04592 SelP_N: Selenoprotein 29.4 1.8E+02 0.0039 27.9 6.6 55 156-215 61-121 (238)
422 PRK14178 bifunctional 5,10-met 29.3 1.6E+02 0.0034 28.7 6.3 30 174-203 48-77 (279)
423 PF13350 Y_phosphatase3: Tyros 29.3 22 0.00048 30.5 0.5 19 48-68 133-151 (164)
424 cd00115 LMWPc Substituted upda 29.3 1.5E+02 0.0032 24.7 5.5 81 129-215 1-87 (141)
425 PRK08655 prephenate dehydrogen 29.2 2E+02 0.0044 29.1 7.4 119 129-272 1-128 (437)
426 smart00226 LMWPc Low molecular 29.2 1.3E+02 0.0029 24.7 5.2 41 169-215 42-82 (140)
427 PF06877 RraB: Regulator of ri 29.1 1.1E+02 0.0023 24.3 4.4 71 45-116 28-98 (104)
428 TIGR03472 HpnI hopanoid biosyn 29.0 5.4E+02 0.012 24.9 11.2 59 129-187 41-103 (373)
429 PRK14172 bifunctional 5,10-met 29.0 1.5E+02 0.0033 28.7 6.2 58 174-237 54-117 (278)
430 PRK10116 universal stress prot 29.0 1.1E+02 0.0024 24.5 4.6 41 175-215 71-113 (142)
431 PRK14315 glmM phosphoglucosami 28.8 5.4E+02 0.012 25.8 10.3 175 42-245 176-368 (448)
432 PRK11175 universal stress prot 28.3 4.6E+02 0.01 23.9 10.3 67 178-265 79-147 (305)
433 PF00266 Aminotran_5: Aminotra 28.2 2.7E+02 0.0059 26.4 7.8 77 129-211 62-146 (371)
434 PF14257 DUF4349: Domain of un 28.2 2E+02 0.0043 26.7 6.7 64 44-109 53-117 (262)
435 PF01451 LMWPc: Low molecular 28.2 1.1E+02 0.0024 25.2 4.5 43 168-215 45-87 (138)
436 PRK13600 putative ribosomal pr 28.0 1.1E+02 0.0023 24.8 4.2 44 144-189 20-63 (84)
437 PRK14187 bifunctional 5,10-met 28.0 1.8E+02 0.004 28.4 6.6 57 174-237 54-117 (294)
438 PRK06849 hypothetical protein; 28.0 3.3E+02 0.0072 26.4 8.5 36 127-165 3-38 (389)
439 PRK14185 bifunctional 5,10-met 27.9 1.4E+02 0.0029 29.3 5.7 57 174-237 53-116 (293)
440 PRK11914 diacylglycerol kinase 27.8 1.7E+02 0.0036 27.6 6.2 8 129-136 9-16 (306)
441 cd02008 TPP_IOR_alpha Thiamine 27.6 4.1E+02 0.0088 23.0 9.0 58 128-189 69-149 (178)
442 cd05015 SIS_PGI_1 Phosphogluco 27.5 1.6E+02 0.0036 25.3 5.6 57 128-189 73-138 (158)
443 PRK03562 glutathione-regulated 27.5 1.3E+02 0.0028 31.9 5.9 50 128-188 400-450 (621)
444 PRK14177 bifunctional 5,10-met 27.5 1.8E+02 0.0038 28.4 6.3 30 174-203 55-84 (284)
445 PRK13940 glutamyl-tRNA reducta 27.4 1.9E+02 0.0041 29.3 6.8 76 128-221 181-258 (414)
446 COG4693 PchG Oxidoreductase (N 27.4 79 0.0017 31.6 4.0 52 126-186 3-55 (361)
447 cd03785 GT1_MurG MurG is an N- 27.3 3.4E+02 0.0074 24.9 8.0 52 130-188 1-55 (350)
448 KOG3076 5'-phosphoribosylglyci 27.3 4.5E+02 0.0098 24.8 8.6 60 124-188 31-94 (206)
449 COG1535 EntB Isochorismate hyd 27.3 1.3E+02 0.0028 28.3 5.1 60 172-237 62-142 (218)
450 PF01784 NIF3: NIF3 (NGG1p int 27.2 1.9E+02 0.0041 26.7 6.3 82 90-189 136-220 (241)
451 smart00851 MGS MGS-like domain 27.2 1.5E+02 0.0033 22.9 4.9 38 144-185 46-89 (90)
452 cd00983 recA RecA is a bacter 27.1 3.6E+02 0.0078 26.7 8.5 60 100-165 4-64 (325)
453 PRK14186 bifunctional 5,10-met 27.0 1.7E+02 0.0038 28.6 6.3 58 174-237 54-117 (297)
454 COG1412 Uncharacterized protei 26.9 75 0.0016 27.8 3.4 38 139-188 87-124 (136)
455 PRK14184 bifunctional 5,10-met 26.9 1.9E+02 0.0041 28.2 6.5 58 174-237 53-116 (286)
456 PF12147 Methyltransf_20: Puta 26.7 4.1E+02 0.0089 26.5 8.7 87 123-215 131-220 (311)
457 PRK14729 miaA tRNA delta(2)-is 26.7 2.6E+02 0.0057 27.3 7.4 92 44-149 6-112 (300)
458 COG1514 LigT 2'-5' RNA ligase 26.6 4.7E+02 0.01 23.5 8.7 102 41-148 1-104 (180)
459 PRK14690 molybdopterin biosynt 26.5 1.8E+02 0.0039 29.6 6.5 75 127-215 192-270 (419)
460 PRK13602 putative ribosomal pr 26.4 3.2E+02 0.0069 21.4 7.1 52 145-203 19-70 (82)
461 cd03087 PGM_like1 This archaea 26.4 6.5E+02 0.014 25.0 11.3 167 42-236 164-345 (439)
462 PRK14168 bifunctional 5,10-met 26.4 1.7E+02 0.0036 28.7 6.0 30 174-203 55-84 (297)
463 PRK11880 pyrroline-5-carboxyla 26.4 2.3E+02 0.005 25.8 6.7 67 128-212 2-70 (267)
464 PRK14191 bifunctional 5,10-met 26.3 1.9E+02 0.0041 28.2 6.4 42 174-218 53-100 (285)
465 PRK13337 putative lipid kinase 26.2 2E+02 0.0044 27.1 6.4 7 130-136 3-9 (304)
466 TIGR03376 glycerol3P_DH glycer 26.2 2.3E+02 0.0051 27.9 7.1 78 130-211 1-89 (342)
467 PRK10014 DNA-binding transcrip 26.1 5E+02 0.011 23.9 8.9 89 100-188 35-127 (342)
468 cd06281 PBP1_LacI_like_5 Ligan 26.1 4.3E+02 0.0093 23.2 8.2 112 98-228 13-139 (269)
469 TIGR03013 EpsB_2 sugar transfe 25.9 2.7E+02 0.0058 27.9 7.6 36 128-165 124-160 (442)
470 PF00781 DAGK_cat: Diacylglyce 25.6 2.2E+02 0.0049 23.1 5.9 40 173-212 20-62 (130)
471 PRK04175 rpl7ae 50S ribosomal 25.6 4E+02 0.0087 22.5 7.5 57 134-203 31-90 (122)
472 COG0769 MurE UDP-N-acetylmuram 25.6 5.5E+02 0.012 26.6 9.9 62 97-164 306-367 (475)
473 KOG4435 Predicted lipid kinase 25.5 2.2E+02 0.0047 29.9 6.8 37 99-139 35-71 (535)
474 PF02056 Glyco_hydro_4: Family 25.5 51 0.0011 30.0 2.2 93 130-231 1-97 (183)
475 PRK06476 pyrroline-5-carboxyla 25.5 2.1E+02 0.0046 26.1 6.3 69 129-213 1-70 (258)
476 TIGR00853 pts-lac PTS system, 25.4 1E+02 0.0023 24.7 3.8 39 173-215 23-61 (95)
477 cd01422 MGS Methylglyoxal synt 25.4 1.8E+02 0.0039 24.0 5.3 39 144-186 61-106 (115)
478 COG0313 Predicted methyltransf 25.4 4.3E+02 0.0093 25.9 8.5 84 134-225 55-149 (275)
479 KOG0098 GTPase Rab2, small G p 25.3 1.2E+02 0.0025 28.7 4.5 52 140-191 95-152 (216)
480 PRK08622 galactose-6-phosphate 25.3 5.2E+02 0.011 23.5 11.5 102 46-188 3-107 (171)
481 PLN02616 tetrahydrofolate dehy 25.0 2.1E+02 0.0046 29.0 6.6 57 174-237 125-188 (364)
482 TIGR00486 YbgI_SA1388 dinuclea 24.9 5.2E+02 0.011 24.0 8.8 92 96-203 138-233 (249)
483 PRK14424 acylphosphatase; Prov 24.9 2.7E+02 0.0059 22.5 6.1 61 100-164 20-80 (94)
484 PLN02897 tetrahydrofolate dehy 24.9 1.8E+02 0.004 29.2 6.1 30 174-203 108-137 (345)
485 cd06364 PBP1_CaSR Ligand-bindi 24.5 7.7E+02 0.017 25.2 13.0 95 44-160 119-220 (510)
486 cd03466 Nitrogenase_NifN_2 Nit 24.5 7.3E+02 0.016 24.9 10.4 94 45-187 303-396 (429)
487 TIGR00147 lipid kinase, YegS/R 24.4 2.4E+02 0.0053 26.1 6.6 13 175-187 26-38 (293)
488 COG4581 Superfamily II RNA hel 24.4 4.3E+02 0.0093 30.5 9.4 117 99-228 179-309 (1041)
489 PRK08306 dipicolinate synthase 24.2 2.8E+02 0.0061 26.5 7.1 76 127-224 151-227 (296)
490 cd01966 Nitrogenase_NifN_1 Nit 24.1 3.1E+02 0.0066 27.6 7.6 44 138-189 211-254 (417)
491 TIGR03677 rpl7ae 50S ribosomal 24.1 1.5E+02 0.0032 24.8 4.6 57 134-203 27-86 (117)
492 PRK10703 DNA-binding transcrip 24.0 4.8E+02 0.01 24.0 8.4 88 100-187 30-121 (341)
493 cd01997 GMP_synthase_C The C-t 24.0 2.4E+02 0.0051 27.4 6.5 56 130-189 1-62 (295)
494 COG0731 Fe-S oxidoreductases [ 23.8 7.1E+02 0.015 24.5 10.8 59 97-165 57-118 (296)
495 PRK07200 aspartate/ornithine c 23.8 7.8E+02 0.017 25.0 10.6 70 198-271 256-334 (395)
496 cd06362 PBP1_mGluR Ligand bind 23.8 6.9E+02 0.015 24.4 13.2 99 42-162 102-207 (452)
497 cd01422 MGS Methylglyoxal synt 23.7 2.5E+02 0.0055 23.1 5.9 71 131-211 2-77 (115)
498 TIGR02706 P_butyryltrans phosp 23.7 5.1E+02 0.011 24.8 8.7 78 128-213 13-96 (294)
499 cd05197 GH4_glycoside_hydrolas 23.6 99 0.0021 31.4 4.0 93 129-233 1-100 (425)
500 PRK09492 treR trehalose repres 23.6 5.6E+02 0.012 23.2 10.9 41 173-213 84-127 (315)
No 1
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-61 Score=447.83 Aligned_cols=215 Identities=40% Similarity=0.633 Sum_probs=200.5
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
|++++++++||+.|||++||||+||++|+++||||++++||.|..+|+||||++|+....+.+.++|+++|+.++++|+|
T Consensus 1 m~~~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m 80 (287)
T COG0788 1 MSNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGM 80 (287)
T ss_pred CCCCccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCc
Confidence 35667899999999999999999999999999999999999988899999999999887768899999999999999996
Q ss_pred ccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCCh
Q 021895 116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER 194 (306)
Q Consensus 116 ~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~-~k~~~~ 194 (306)
.|++.+.+.++||++|+|+++|||.+||++|+.|+|+++|++|||||++ ....|++||||||+++ .|+++.
T Consensus 81 ---~~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~~~~IPfhhip~~~~~k~ 152 (287)
T COG0788 81 ---DWRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVERFDIPFHHIPVTKENKA 152 (287)
T ss_pred ---eeEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHHHcCCCeeeccCCCCcch
Confidence 4788999999999999999999999999999999999999999999975 6889999999999999 666544
Q ss_pred --HHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCC
Q 021895 195 --EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF 270 (306)
Q Consensus 195 --e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f 270 (306)
|++++++++ ++|+||||+||| |||++|+++|+++||||||||||+|
T Consensus 153 e~E~~~~~ll~~~~~DlvVLARYMq------------------------------ILS~d~~~~~~g~iINIHHSFLPaF 202 (287)
T COG0788 153 EAEARLLELLEEYGADLVVLARYMQ------------------------------ILSPDFVERFPGKIINIHHSFLPAF 202 (287)
T ss_pred HHHHHHHHHHHHhCCCEEeehhhHh------------------------------hCCHHHHHhccCcEEEecccccccC
Confidence 577899997 899999999999 9999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhhcCc
Q 021895 271 KGGKPAKQVGCFTFCLGN 288 (306)
Q Consensus 271 ~Ga~p~~~A~~~~~~l~~ 288 (306)
+||+||+||.+...+|=|
T Consensus 203 ~GA~PY~QA~eRGVKlIG 220 (287)
T COG0788 203 IGANPYHQAYERGVKLIG 220 (287)
T ss_pred CCCChHHHHHhcCCeEee
Confidence 999999999998887754
No 2
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=1e-54 Score=407.76 Aligned_cols=209 Identities=37% Similarity=0.653 Sum_probs=188.5
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH-HHhhhhcccceee
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR 121 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~-la~elgl~~~~~r 121 (306)
+|||++||||+||||+||++|+++||||+|++|+++.++|+||||++|+.++...+.++|+++|++ +++++||. |+
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~---i~ 77 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMT---WE 77 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCE---EE
Confidence 489999999999999999999999999999999998788999999999998655789999999999 99999973 67
Q ss_pred ecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC---hHHHH
Q 021895 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE---REEEL 198 (306)
Q Consensus 122 l~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~---~e~e~ 198 (306)
+.+.++++|||||+||+||||++|+++++.|+++++|++|||||+ ++ ..+|+++|||+++++.+... .|+++
T Consensus 78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~---~~--~~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE---DL--RSLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh---hH--HHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 888889999999999999999999999999999999999999994 44 44799999999998853222 24678
Q ss_pred HHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHH
Q 021895 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 276 (306)
Q Consensus 199 ~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~ 276 (306)
+++++ ++|++||||||| ||+++|++.|++++|||||||||+|+|++|+
T Consensus 153 ~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~iINiHpSLLP~f~G~~p~ 202 (280)
T TIGR00655 153 LELLKQYQVDLVVLAKYMQ------------------------------ILSPDFVKRYPNKIINIHHSFLPAFIGANPY 202 (280)
T ss_pred HHHHHHhCCCEEEEeCchh------------------------------hCCHHHHhhccCCEEEecCCcCCCCCCcCHH
Confidence 88886 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhhcCce
Q 021895 277 KQVGCFTFCLGNL 289 (306)
Q Consensus 277 ~~A~~~~~~l~~~ 289 (306)
+||+......-|+
T Consensus 203 ~~ai~~G~k~tG~ 215 (280)
T TIGR00655 203 QRAYERGVKIIGA 215 (280)
T ss_pred HHHHHcCCCeEEE
Confidence 9998776555443
No 3
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=5.4e-54 Score=404.56 Aligned_cols=214 Identities=31% Similarity=0.556 Sum_probs=190.0
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHhhhhcc
Q 021895 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD-PIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~-~~~~~~eeLreaL~~la~elgl~ 116 (306)
|+|.++||||+||||+||||+||++|+++|+||+|++|+.+...|.||||+++... +...+.++|+++|+++++++|+.
T Consensus 5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCe
Confidence 55678999999999999999999999999999999999877778999999998833 23578999999999999999974
Q ss_pred cceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC---C
Q 021895 117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---E 193 (306)
Q Consensus 117 ~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~---~ 193 (306)
|++...++++|||||+||+||||++|++++++|+++++|++||||++ + +.++|+++|||+++++.+.. +
T Consensus 85 ---~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~---~--~~~~A~~~gIp~~~~~~~~~~~~~ 156 (289)
T PRK13010 85 ---WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP---D--LQPLAVQHDIPFHHLPVTPDTKAQ 156 (289)
T ss_pred ---EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh---h--HHHHHHHcCCCEEEeCCCcccccc
Confidence 56777788899999999999999999999999999999999999994 3 46999999999999885432 2
Q ss_pred hHHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCC
Q 021895 194 REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFK 271 (306)
Q Consensus 194 ~e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~ 271 (306)
.|++++++++ ++|++||||||| ||+++|++.|++++|||||||||+|+
T Consensus 157 ~~~~~~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~iiNiHpSlLP~f~ 206 (289)
T PRK13010 157 QEAQILDLIETSGAELVVLARYMQ------------------------------VLSDDLSRKLSGRAINIHHSFLPGFK 206 (289)
T ss_pred hHHHHHHHHHHhCCCEEEEehhhh------------------------------hCCHHHHhhccCCceeeCcccCCCCC
Confidence 3467888887 899999999999 99999999999999999999999999
Q ss_pred CCcHHHHHHHHHhhcCce
Q 021895 272 GGKPAKQVGCFTFCLGNL 289 (306)
Q Consensus 272 Ga~p~~~A~~~~~~l~~~ 289 (306)
|++|++||+....+.-|+
T Consensus 207 G~~~~~~ai~~G~k~tG~ 224 (289)
T PRK13010 207 GARPYHQAHARGVKLIGA 224 (289)
T ss_pred CCCHHHHHHHcCCCeEEE
Confidence 999999998776655443
No 4
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=2.2e-51 Score=383.96 Aligned_cols=201 Identities=75% Similarity=1.271 Sum_probs=184.5
Q ss_pred HHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCC
Q 021895 59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ 138 (306)
Q Consensus 59 VS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~ 138 (306)
||++|+++||||++++||+|..+|+||||++++.++...+.++|+++|++++++|+|.|+.|++.+.++++|||||+||+
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~ 80 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQ 80 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCC
Confidence 58899999999999999999999999999999977444578999999999999999767689999999999999999999
Q ss_pred cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCChHHHHHHHhcCCcEEEEeccCCCC
Q 021895 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENEREEELLELVQNTDFLVLARYMQPV 217 (306)
Q Consensus 139 g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~-k~~~~e~e~~~~v~~~D~vVlA~ym~~~ 217 (306)
||||++|++++++|+|+++|++|||||+++++++++++|+++|||+++++. +.+.+|++++++++++|++|||||||
T Consensus 81 g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~-- 158 (268)
T PLN02828 81 DHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ-- 158 (268)
T ss_pred ChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehH--
Confidence 999999999999999999999999999877778999999999999998884 34556778888888999999999999
Q ss_pred cCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHHhhcCce
Q 021895 218 PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTFCLGNL 289 (306)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~~~l~~~ 289 (306)
||+++|++.|+++||||||||||+|+|++||+||+....+.-|+
T Consensus 159 ----------------------------IL~~~~l~~~~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~ 202 (268)
T PLN02828 159 ----------------------------ILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGA 202 (268)
T ss_pred ----------------------------hCCHHHHhhccCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEE
Confidence 99999999999999999999999999999999998876665443
No 5
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=3.7e-50 Score=377.74 Aligned_cols=212 Identities=33% Similarity=0.553 Sum_probs=188.3
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
|+.-|.++++||+|+|||||||+||++|+++|+||+|++|+++.+++.|+|+++++.|+ ..+.++|+++|+++++++++
T Consensus 1 ~~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 1 MSRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGM 79 (286)
T ss_pred CCCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCc
Confidence 35567789999999999999999999999999999999999777899999999999885 56899999999999999997
Q ss_pred ccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC--
Q 021895 116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE-- 193 (306)
Q Consensus 116 ~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~-- 193 (306)
. +++...++++|||||+||+|+||++|+++++.|+++++|++||||++ ++ ..+|+++|||+++++.+...
T Consensus 80 ~---i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~---~~--~~lA~~~gIp~~~~~~~~~~~~ 151 (286)
T PRK13011 80 Q---WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP---DL--EPLAAWHGIPFHHFPITPDTKP 151 (286)
T ss_pred E---EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc---cH--HHHHHHhCCCEEEeCCCcCchh
Confidence 4 55677778899999999999999999999999999999999999984 33 45599999999998743322
Q ss_pred -hHHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCC
Q 021895 194 -REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF 270 (306)
Q Consensus 194 -~e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f 270 (306)
.|+++++.++ ++|++|+||||+ ||+++|++.|++++|||||||||+|
T Consensus 152 ~~~~~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~iiNiHpSLLP~~ 201 (286)
T PRK13011 152 QQEAQVLDVVEESGAELVVLARYMQ------------------------------VLSPELCRKLAGRAINIHHSFLPGF 201 (286)
T ss_pred hhHHHHHHHHHHhCcCEEEEeChhh------------------------------hCCHHHHhhccCCeEEeccccCCCC
Confidence 2456778776 899999999999 9999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhhc
Q 021895 271 KGGKPAKQVGCFTFCL 286 (306)
Q Consensus 271 ~Ga~p~~~A~~~~~~l 286 (306)
+|++|++||+......
T Consensus 202 rG~~~~~~ai~~G~~~ 217 (286)
T PRK13011 202 KGAKPYHQAYERGVKL 217 (286)
T ss_pred CCCcHHHHHHHCCCCe
Confidence 9999999997665443
No 6
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=4.5e-50 Score=376.73 Aligned_cols=211 Identities=42% Similarity=0.699 Sum_probs=187.7
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccce
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~ 119 (306)
++++++|++|+||||||++||++|+++||||+|++|+....+|.|+|++++++++.+.+.++|+++|+++++++++.
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~--- 80 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEMD--- 80 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCE---
Confidence 46799999999999999999999999999999999998556889999999999444567999999999999999974
Q ss_pred eeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC---ChHH
Q 021895 120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---EREE 196 (306)
Q Consensus 120 ~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~---~~e~ 196 (306)
+.+.+..+++|||||+||+|+||++|+++++.|+++++|++||||++ + +..+|+++|||+++++.+.. +.|+
T Consensus 81 i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~---~--~~~lA~~~gIp~~~~~~~~~~~~~~~~ 155 (286)
T PRK06027 81 WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD---D--LRSLVERFGIPFHHVPVTKETKAEAEA 155 (286)
T ss_pred EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh---h--HHHHHHHhCCCEEEeccCccccchhHH
Confidence 56788889999999999999999999999999999999999999994 3 34569999999999885422 2356
Q ss_pred HHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCc
Q 021895 197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 274 (306)
Q Consensus 197 e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~ 274 (306)
++.++++ ++|++||||||+ ||+++|++.|++++|||||||||+|+|++
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~iiNiHpSLLP~yrG~~ 205 (286)
T PRK06027 156 RLLELIDEYQPDLVVLARYMQ------------------------------ILSPDFVARFPGRIINIHHSFLPAFKGAK 205 (286)
T ss_pred HHHHHHHHhCCCEEEEecchh------------------------------hcCHHHHhhccCCceecCcccCCCCCCCC
Confidence 7788887 899999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCc
Q 021895 275 PAKQVGCFTFCLGN 288 (306)
Q Consensus 275 p~~~A~~~~~~l~~ 288 (306)
|++||+......-|
T Consensus 206 ~~~~ai~~G~~~tG 219 (286)
T PRK06027 206 PYHQAYERGVKLIG 219 (286)
T ss_pred HHHHHHHCCCCeEE
Confidence 99999776555433
No 7
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.3e-33 Score=251.53 Aligned_cols=126 Identities=33% Similarity=0.456 Sum_probs=116.1
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-C---hHHHHHHHhc-
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-E---REEELLELVQ- 203 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~-~---~e~e~~~~v~- 203 (306)
+||+||+||+|+|||+|+++++.|+++++|++||||+ ++++++++|+++|||+.++..|+. . .|+++.+.+.
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999 789999999999999999987653 2 3567888886
Q ss_pred -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF 282 (306)
Q Consensus 204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~ 282 (306)
++|+|||||||+ ||++.|++.|+++||||||||||+|+|.+.++||++.
T Consensus 78 ~~~dlvvLAGyMr------------------------------IL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~a 127 (200)
T COG0299 78 YGPDLVVLAGYMR------------------------------ILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEA 127 (200)
T ss_pred cCCCEEEEcchHH------------------------------HcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999888
Q ss_pred HhhcC
Q 021895 283 TFCLG 287 (306)
Q Consensus 283 ~~~l~ 287 (306)
..+.-
T Consensus 128 G~k~s 132 (200)
T COG0299 128 GVKVS 132 (200)
T ss_pred CCCcc
Confidence 77643
No 8
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5.9e-30 Score=229.50 Aligned_cols=129 Identities=36% Similarity=0.469 Sum_probs=116.2
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCC--CeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC-CCh---HHHHHH
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NER---EEELLE 200 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l--~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~-~~~---e~e~~~ 200 (306)
++.|++||+||.|+|||+|+++.++|.+ .++|+.||||+ .+++++++|++.|||+.+++.+. ..| +.|+.+
T Consensus 5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~ 81 (206)
T KOG3076|consen 5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAE 81 (206)
T ss_pred cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHHH
Confidence 6789999999999999999999999999 69999999999 67999999999999999999642 233 356776
Q ss_pred Hhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHH
Q 021895 201 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278 (306)
Q Consensus 201 ~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~ 278 (306)
.+. .+|+|||||||| |||++|++.|+++||||||||||+|+|.++++|
T Consensus 82 ~l~e~~~d~v~lAG~M~------------------------------iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~ 131 (206)
T KOG3076|consen 82 VLLELGTDLVCLAGYMR------------------------------ILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQ 131 (206)
T ss_pred HHHHhCCCEEEehhhHH------------------------------HcCHHHHhhcccceEecccccccccCCchHHHH
Confidence 665 999999999999 999999999999999999999999999999999
Q ss_pred HHHHHhhcCc
Q 021895 279 VGCFTFCLGN 288 (306)
Q Consensus 279 A~~~~~~l~~ 288 (306)
|+++...+-|
T Consensus 132 Aleagv~~~G 141 (206)
T KOG3076|consen 132 ALEAGVKLSG 141 (206)
T ss_pred HHHhcccccc
Confidence 9988765544
No 9
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=99.95 E-value=5e-28 Score=218.99 Aligned_cols=117 Identities=24% Similarity=0.483 Sum_probs=105.7
Q ss_pred eEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC----CChHHHHHHHhc--
Q 021895 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-- 203 (306)
Q Consensus 130 riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~----~~~e~e~~~~v~-- 203 (306)
||+||+||+|+||++|++++++|+++++|++||||+ +++.++++|+++|||+++++.+. ...++++.+.++
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~---~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNK---PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA 77 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeC---CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence 799999999999999999999999999999999998 67899999999999999987542 123567878776
Q ss_pred CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC----cHHHHH
Q 021895 204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQV 279 (306)
Q Consensus 204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga----~p~~~A 279 (306)
++|++|+||||+ |++++|++.|+.++||+||||||+|||+ .|++|+
T Consensus 78 ~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a 127 (207)
T PLN02331 78 GVDFVLLAGYLK------------------------------LIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKA 127 (207)
T ss_pred CCCEEEEeCcch------------------------------hCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHH
Confidence 899999999999 9999999999999999999999999995 577766
No 10
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=99.95 E-value=1.1e-27 Score=213.71 Aligned_cols=122 Identities=30% Similarity=0.501 Sum_probs=110.0
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC----CChHHHHHHHhc-
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ- 203 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~----~~~e~e~~~~v~- 203 (306)
+|||||+||+|+|+++++++++++.++++|++||+|+ +++.+.++|+++|||+++++.+. +..|+++.+.++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~---~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECC---ccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 5899999999999999999999999999999999998 46789999999999999876432 123567888886
Q ss_pred -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF 282 (306)
Q Consensus 204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~ 282 (306)
++|++|++|||+ |+++++++.|+.++||+||||||.|||.+|++||+..
T Consensus 78 ~~~D~iv~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (190)
T TIGR00639 78 HEVDLVVLAGFMR------------------------------ILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEA 127 (190)
T ss_pred cCCCEEEEeCcch------------------------------hCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999654
Q ss_pred H
Q 021895 283 T 283 (306)
Q Consensus 283 ~ 283 (306)
.
T Consensus 128 g 128 (190)
T TIGR00639 128 G 128 (190)
T ss_pred C
Confidence 3
No 11
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=99.94 E-value=2.3e-26 Score=206.53 Aligned_cols=125 Identities=34% Similarity=0.461 Sum_probs=110.6
Q ss_pred CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCC---hHHHHHHHhc
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ 203 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~---~e~e~~~~v~ 203 (306)
++|||||+||+|+|+++++++++++.++++|++||||+ +++.+.++|+++|||+++++.+ ... .++++.+.++
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~---~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 77 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD 77 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecC---ccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence 37999999999999999999999999999999999998 4678999999999999997732 221 2457777775
Q ss_pred --CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHH
Q 021895 204 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGC 281 (306)
Q Consensus 204 --~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~ 281 (306)
++|++|++|||+ |+++++++.|+.++||+||||||.|||++|++||+.
T Consensus 78 ~~~~D~iv~~~~~~------------------------------ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~ 127 (200)
T PRK05647 78 AYQPDLVVLAGFMR------------------------------ILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALE 127 (200)
T ss_pred HhCcCEEEhHHhhh------------------------------hCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHH
Confidence 899999999999 999999999999999999999999999999999976
Q ss_pred HHhh
Q 021895 282 FTFC 285 (306)
Q Consensus 282 ~~~~ 285 (306)
..-.
T Consensus 128 ~g~~ 131 (200)
T PRK05647 128 AGVK 131 (200)
T ss_pred cCCC
Confidence 5443
No 12
>PLN02285 methionyl-tRNA formyltransferase
Probab=99.92 E-value=4.3e-25 Score=211.65 Aligned_cols=134 Identities=23% Similarity=0.318 Sum_probs=112.5
Q ss_pred CCCCceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChH
Q 021895 125 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENERE 195 (306)
Q Consensus 125 ~~~~~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e 195 (306)
.++++||+||+|++ .+||++|+++++.|..+++|++|||++|+.. .+++.++|+++|||++++......++
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 47899999999998 4899999999988988899999999998742 24799999999999775543233334
Q ss_pred HHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 196 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 196 ~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
+++++.++ ++|++|+++||+ ||++++++.++.++||+||||||+|||+
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~------------------------------ilp~~~l~~~~~g~iNiHpSLLP~yRG~ 132 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN------------------------------ILPQKFLDIPKLGTVNIHPSLLPLYRGA 132 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh------------------------------hcCHHHHhhccCCEEEEecccccCCCCc
Confidence 56666665 899999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcCc
Q 021895 274 KPAKQVGCFTFCLGN 288 (306)
Q Consensus 274 ~p~~~A~~~~~~l~~ 288 (306)
+|++||+...-...|
T Consensus 133 ~pi~~ai~~G~~~tG 147 (334)
T PLN02285 133 APVQRALQDGVNETG 147 (334)
T ss_pred CHHHHHHHcCCCcEE
Confidence 999999655444333
No 13
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=99.90 E-value=2.7e-23 Score=182.09 Aligned_cols=125 Identities=31% Similarity=0.409 Sum_probs=104.5
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC-C---ChHHHHHHHhc-
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELLELVQ- 203 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~-~---~~e~e~~~~v~- 203 (306)
+||+||+||+++|++++|++++++...++|++||||+|+ ..++.++.+.++|...+.... . ..++++.+.++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDK---PRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTT---THHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccc---cccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 699999999999999999999988877899999999965 467899999999999887432 1 23467888886
Q ss_pred -CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHH
Q 021895 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCF 282 (306)
Q Consensus 204 -~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~ 282 (306)
++|++|++|||+ |+++++++.|+.++||+|||+||.|||++|++||+..
T Consensus 78 ~~~Dl~v~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (181)
T PF00551_consen 78 LNPDLIVVAGYGR------------------------------ILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILN 127 (181)
T ss_dssp TT-SEEEESS-SS---------------------------------HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHH
T ss_pred hccceeehhhhHH------------------------------HhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcC
Confidence 999999999999 9999999999999999999999999999999999766
Q ss_pred Hhhc
Q 021895 283 TFCL 286 (306)
Q Consensus 283 ~~~l 286 (306)
.-..
T Consensus 128 g~~~ 131 (181)
T PF00551_consen 128 GEKE 131 (181)
T ss_dssp TSSE
T ss_pred Ccce
Confidence 5443
No 14
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.5e-22 Score=188.44 Aligned_cols=117 Identities=25% Similarity=0.344 Sum_probs=99.3
Q ss_pred CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 021895 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 198 (306)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e~e~ 198 (306)
++||+||++.+. .+|++|++. +++|++|+|.+|+.. .+++.++|.+||||++.... - +.+|+
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~-l--~~~e~ 71 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEK-L--NDPEF 71 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceecccc-C--CcHHH
Confidence 479999999986 789999873 489999999999852 37999999999999888542 1 22245
Q ss_pred HHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHH
Q 021895 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 276 (306)
Q Consensus 199 ~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~ 276 (306)
.+.+. ++|++|++.|+| ||+.++++.++.++||+|+||||+|||++|+
T Consensus 72 ~~~l~~l~~D~ivvvayG~------------------------------ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPI 121 (307)
T COG0223 72 LEELAALDPDLIVVVAYGQ------------------------------ILPKEILDLPPYGCINLHPSLLPRYRGAAPI 121 (307)
T ss_pred HHHHhccCCCEEEEEehhh------------------------------hCCHHHHhcCcCCeEEecCccCccccCccHH
Confidence 55555 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHHH
Q 021895 277 KQVGCFT 283 (306)
Q Consensus 277 ~~A~~~~ 283 (306)
+||+...
T Consensus 122 q~aI~~G 128 (307)
T COG0223 122 QWAILNG 128 (307)
T ss_pred HHHHHcC
Confidence 9995433
No 15
>PRK06988 putative formyltransferase; Provisional
Probab=99.82 E-value=5.7e-20 Score=174.57 Aligned_cols=116 Identities=24% Similarity=0.358 Sum_probs=97.6
Q ss_pred CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 021895 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (306)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~----~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~ 201 (306)
++||+||+|+.. .||++|++. ..+|++|+|++|+.. .+++.++|+++|||++.... ..++++.+.
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~---~~~~~~~~~ 72 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPAD---PNDPELRAA 72 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEcccc---CCCHHHHHH
Confidence 479999999973 799998863 378999999987632 35899999999999987432 223456666
Q ss_pred hc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHH
Q 021895 202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQV 279 (306)
Q Consensus 202 v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A 279 (306)
++ ++|++|+++|++ |+++++++.++.++||+||||||+|||++|++||
T Consensus 73 l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~a 122 (312)
T PRK06988 73 VAAAAPDFIFSFYYRH------------------------------MIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWA 122 (312)
T ss_pred HHhcCCCEEEEehhcc------------------------------ccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHH
Confidence 65 899999999999 9999999999999999999999999999999999
Q ss_pred HHH
Q 021895 280 GCF 282 (306)
Q Consensus 280 ~~~ 282 (306)
+..
T Consensus 123 i~~ 125 (312)
T PRK06988 123 VLN 125 (312)
T ss_pred HHc
Confidence 544
No 16
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=99.81 E-value=1.5e-19 Score=171.49 Aligned_cols=115 Identities=24% Similarity=0.400 Sum_probs=96.1
Q ss_pred ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-------ChhHHHHHHhCCCCEEEeCCCCCChHHHHH
Q 021895 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (306)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-------~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~ 199 (306)
+||+||+|+.. .||++|++. +.+|++|+|++|+.. .+++.++|+++|||++...... +++++
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~---~~~~~ 71 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQR---QLEEL 71 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCC---cHHHH
Confidence 59999999975 788888763 379999999987631 3579999999999998865321 22445
Q ss_pred HHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHH
Q 021895 200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277 (306)
Q Consensus 200 ~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~ 277 (306)
+.++ ++|++|+++|++ ||++++++.++.++||+||||||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~ 121 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGK------------------------------ILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQ 121 (313)
T ss_pred HHHHhhCCCEEEEccchh------------------------------hCCHHHHhhccCCEEEecCccccCCCCccHHH
Confidence 5555 999999999999 99999999999999999999999999999999
Q ss_pred HHHHH
Q 021895 278 QVGCF 282 (306)
Q Consensus 278 ~A~~~ 282 (306)
||+..
T Consensus 122 wai~~ 126 (313)
T TIGR00460 122 RAILN 126 (313)
T ss_pred HHHHC
Confidence 99544
No 17
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=99.80 E-value=1.9e-19 Score=170.14 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=97.4
Q ss_pred ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCC-------CChhHHHHHHhCCCCEEEeCCCCCChHHHHH
Q 021895 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEELL 199 (306)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~-------~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~ 199 (306)
+||+||+|+.. .||+.|++. ..+|++|||.+|+. ..+++.++|+++|||++.... - +++++.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~-~--~~~~~~ 71 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEK-L--RDPEFL 71 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCC-C--CCHHHH
Confidence 59999999875 789888763 37899999987652 135799999999999977542 1 234556
Q ss_pred HHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHH
Q 021895 200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277 (306)
Q Consensus 200 ~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~ 277 (306)
+.++ ++|++|+++|++ ||++++++.++.++||+||||||.|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~ 121 (309)
T PRK00005 72 AELAALNADVIVVVAYGQ------------------------------ILPKAVLDIPRLGCINLHASLLPRWRGAAPIQ 121 (309)
T ss_pred HHHHhcCcCEEEEehhhc------------------------------ccCHHHHhcCCCCEEEEeCcccccCCCccHHH
Confidence 6665 999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHh
Q 021895 278 QVGCFTF 284 (306)
Q Consensus 278 ~A~~~~~ 284 (306)
||+...-
T Consensus 122 wai~~g~ 128 (309)
T PRK00005 122 RAIIAGD 128 (309)
T ss_pred HHHHcCC
Confidence 9965443
No 18
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=99.77 E-value=1.4e-18 Score=133.69 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=65.8
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
++|||++|||||||||+||++|+++||||+|++|+. .+|.|+||++++.+. .+.++|+++|+++++++|+.
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l~ 71 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEGSW--DAIAKLEAALPGLARRLDLT 71 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCCE
Confidence 479999999999999999999999999999999997 489999999999874 47899999999999999863
No 19
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.75 E-value=6.5e-18 Score=173.10 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=96.2
Q ss_pred ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh
Q 021895 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (306)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~----~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v 202 (306)
+||+||+|++. .+|++|++. ..+|++|+|.+|++. .+++.++|+++|||++..... +++++++.+
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~---~~~~~~~~l 71 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDV---NHPLWVERI 71 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCC---CcHHHHHHH
Confidence 58999999875 788888753 378999999987632 247899999999999885421 233455666
Q ss_pred c--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHH
Q 021895 203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVG 280 (306)
Q Consensus 203 ~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~ 280 (306)
+ ++|++|+++|++ ||++++++.++.++||+||||||+|||++|++||+
T Consensus 72 ~~~~~D~iv~~~~~~------------------------------ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai 121 (660)
T PRK08125 72 RELAPDVIFSFYYRN------------------------------LLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL 121 (660)
T ss_pred HhcCCCEEEEccccc------------------------------cCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHH
Confidence 5 899999999999 99999999999999999999999999999999995
Q ss_pred HH
Q 021895 281 CF 282 (306)
Q Consensus 281 ~~ 282 (306)
..
T Consensus 122 ~~ 123 (660)
T PRK08125 122 VN 123 (660)
T ss_pred Hc
Confidence 44
No 20
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=99.72 E-value=5.9e-18 Score=136.31 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=71.3
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
++++|+||+|+||+||||+||+.||++|+||+|++|+++ +|+|+|++.|++++...+..+++++|++.++++|+.
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE
Confidence 478999999999999999999999999999999999987 899999999999988899999999999999999963
No 21
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=1.3e-16 Score=120.61 Aligned_cols=72 Identities=35% Similarity=0.644 Sum_probs=66.6
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
||++.|+||||||++||++|+++||||++++|+.+...+.|+|++++++++.+.+.++|+++|+++++++++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 72 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDM 72 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999766788999999999986446899999999999999985
No 22
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=5e-16 Score=121.32 Aligned_cols=74 Identities=20% Similarity=0.159 Sum_probs=67.7
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~ 117 (306)
+++++++|+||||||++||++|+++||||++++|++. .+.|+|+++++.++...+.++|+++|+++++++|+.+
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~~ 74 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVKI 74 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 5899999999999999999999999999999999874 7999999999998534679999999999999999754
No 23
>PRK07579 hypothetical protein; Provisional
Probab=99.64 E-value=8.9e-16 Score=142.93 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=87.8
Q ss_pred CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHH-hCCCCEEEeCCCCCChHHHHHHHhcC
Q 021895 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN 204 (306)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~-~~gIp~~~~~~k~~~~e~e~~~~v~~ 204 (306)
++||.|++.+.- .|+++|+.+. ..+.+++.||.++++. +++ .+++|.+.++ -.+.+.+++.+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~ 65 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIARK--NDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLD-----VAERVAEIVER 65 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhhc--cCcceEEEEeccCCcc--------cccccccccccCcc-----hhhhHHhhhcC
Confidence 469999999863 6999999874 4668999999998742 222 4456644443 23457777789
Q ss_pred CcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHHh
Q 021895 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFTF 284 (306)
Q Consensus 205 ~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~~ 284 (306)
+|++|+++||| ||++++++.+ ++||+||||||.|||++|++||+...-
T Consensus 66 ~DliVvvayg~------------------------------ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe 113 (245)
T PRK07579 66 YDLVLSFHCKQ------------------------------RFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGL 113 (245)
T ss_pred CCEEEEchhhc------------------------------cCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCC
Confidence 99999999999 9999999987 599999999999999999999965443
No 24
>PRK00194 hypothetical protein; Validated
Probab=99.62 E-value=1.1e-15 Score=119.35 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=68.5
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~ 117 (306)
++++++|+.|+||||||++||++|+++|+||++++++.. .|.|+|+++++.+..+.+.++|+++|+++++++++.+
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~~ 76 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVKI 76 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 358999999999999999999999999999999999864 7899999999998534578999999999999999743
No 25
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=3e-15 Score=113.93 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=63.8
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
++||.|+||||||++||++|+++||||+|++|.+. .+.|.|.+.++.|+ ..+.++|+++|+.+++++|+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l 69 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGL 69 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCc
Confidence 58999999999999999999999999999998765 68999999999986 46899999999999999986
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=99.60 E-value=1.6e-15 Score=116.27 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=62.7
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
++++||+.|+||||||++||+.|+++||||+|++|... +|+|.|.+.++.++. +.++|+++|.++++++|+.
T Consensus 1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~~--~~~~l~~~L~~l~~~~~l~ 72 (76)
T PF13740_consen 1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPED--SLERLESALEELAEELGLD 72 (76)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESHH--HHHHHHHHHHHHHHHTT-E
T ss_pred CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCcc--cHHHHHHHHHHHHHHCCcE
Confidence 36899999999999999999999999999999999865 899999999999853 7899999999999999963
No 27
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=99.57 E-value=1.2e-14 Score=110.23 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=65.7
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~----l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
+|++.|+||+|||++||++|+++|+||.+++++... ..+.|+|+++|++|+ ..+.++|+++|+.+++++|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~~ 76 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNVD 76 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcce
Confidence 589999999999999999999999999999998764 348999999999986 578999999999999999964
No 28
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.51 E-value=1.2e-13 Score=124.16 Aligned_cols=73 Identities=12% Similarity=0.006 Sum_probs=65.8
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
++++|||++|+|||||||+||+.|+++||||+|++|+.. +|.|+|+|.++.+.. ..++|+++|..+++++|+.
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~~--~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSWN--AITLIESTLPLKGAELDLL 78 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCChh--HHHHHHHHHHhhhhhcCeE
Confidence 477999999999999999999999999999999999754 899999999987653 7899999999999888763
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.19 E-value=6.7e-11 Score=106.50 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=66.2
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~----l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
.|.++|+|+||||||++||++|+++|+||.+++..... ....|.|++++++|+ ..+.++|+++|+++++++++.
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTELNAQ 172 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHHhCce
Confidence 59999999999999999999999999999999887532 234799999999996 567999999999999999964
No 30
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=99.08 E-value=1.1e-10 Score=91.94 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=58.1
Q ss_pred EEEEEcCC-ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeE---------EEEEEEEeCCCCCCHHHHHHHHHHHHhhh
Q 021895 44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVF---------YSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (306)
Q Consensus 44 ILTViGpD-RpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~F---------fMrmeVdv~~~~~~~eeLreaL~~la~el 113 (306)
|+|+.|.| +.|+||+||++||++|+||.++++. .|+| .|.++++++..+.+.++|+++|.++++++
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l----~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~el 76 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL----SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASEL 76 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh----hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhccc
Confidence 68999999 9999999999999999999999994 3444 45556655544578999999999999999
Q ss_pred hcc
Q 021895 114 NAM 116 (306)
Q Consensus 114 gl~ 116 (306)
|++
T Consensus 77 gvD 79 (84)
T cd04871 77 NVD 79 (84)
T ss_pred Cce
Confidence 863
No 31
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.5e-10 Score=106.39 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=77.3
Q ss_pred CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCC-------CChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 021895 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEEL 198 (306)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~-------~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~ 198 (306)
.+.+-+++|... .-++.+... .+.+.+++.++.. ..+|+...|...|.++.-+-.......
T Consensus 6 ~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~k~~~--- 75 (338)
T KOG3082|consen 6 PLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGWKNFH--- 75 (338)
T ss_pred ccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccChhhccc---
Confidence 345556666543 334444432 3444455544221 124555566666777665542111011
Q ss_pred HHHhc-CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHH
Q 021895 199 LELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277 (306)
Q Consensus 199 ~~~v~-~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~ 277 (306)
++.. +.|++|.|.|++ +|+.++++.+|+++||+||||||+|||++|++
T Consensus 76 -d~~~~~~~l~ItaSfGr------------------------------llp~kll~~~pyg~iNVHPSLLPk~RGaAPV~ 124 (338)
T KOG3082|consen 76 -DLMRPDDQLAITASFGR------------------------------LLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQ 124 (338)
T ss_pred -cccCCCcceEEEeehhc------------------------------cCcHHHHhhCCcceeecChhhcccccCcchHH
Confidence 2233 789999999999 99999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 021895 278 QVGCFTFCL 286 (306)
Q Consensus 278 ~A~~~~~~l 286 (306)
+|+.-.-..
T Consensus 125 ~all~GD~~ 133 (338)
T KOG3082|consen 125 RALLNGDTL 133 (338)
T ss_pred HHHhcCCcc
Confidence 995544333
No 32
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.77 E-value=3.3e-08 Score=71.02 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=48.1
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~-G~FfMrmeVdv~~~~~~~eeLreaL~~la 110 (306)
|.|++.|+||||++++|++.|+++|+||..+.+..+... +.+++....+ ..+.+++.++|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD----EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE----GHGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC----CCCHHHHHHHHHccc
Confidence 578999999999999999999999999999999876442 2233333333 235677777777653
No 33
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.65 E-value=3.4e-08 Score=88.39 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=62.6
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
.+|||++|+||||+|-.+++.++++||||++++.. ..++.|+.++.+..+.+ ..+.|++.|..+.++.|+.
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lisgs~d--av~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLISGSWD--AVTLLEATLPLLGAELDLL 75 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEeeCHH--HHHHHHHHhhcccccCCeE
Confidence 38999999999999999999999999999999885 34788888888887654 5799999999999998863
No 34
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.46 E-value=7.7e-07 Score=67.98 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=41.8
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
|+.+.|+||||++++|++.|+++||||.+.+.+.. +|++...+.|.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~ 47 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVR 47 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEE
Confidence 78999999999999999999999999999998854 78888888875
No 35
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.27 E-value=2.1e-06 Score=76.98 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=64.7
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec----cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV----PEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i----d~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
....|.+.|.+.||||||.++|+++.+||+||++++... ...+..|..-+-+.+|. +...+.|+++|++++.+++
T Consensus 89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~ 167 (176)
T COG2716 89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELN 167 (176)
T ss_pred CCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhc
Confidence 345689999999999999999999999999999976643 12345688778788875 7899999999999999998
Q ss_pred cc
Q 021895 115 AM 116 (306)
Q Consensus 115 l~ 116 (306)
+.
T Consensus 168 v~ 169 (176)
T COG2716 168 VD 169 (176)
T ss_pred ce
Confidence 63
No 36
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.20 E-value=8.7e-06 Score=61.99 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=51.6
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la 110 (306)
..++-|.+.|.||+|+++.|++.+++.|+||.+++.......+.+.+.+.+++. +.++|..-++++-
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~----d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK----DLEHLNQIIRKLR 70 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES----SHHHHHHHHHHHC
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC----CHHHHHHHHHHHH
Confidence 445788999999999999999999999999999999764336888899999986 3566666666543
No 37
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.10 E-value=2.4e-05 Score=56.68 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=40.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~ 94 (306)
.|++.|+|++|+++.+++.|+++|+||.++.++.. .+....++.++.++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEECCC
Confidence 57899999999999999999999999999998754 33555666666543
No 38
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=98.06 E-value=1.2e-05 Score=72.08 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=57.4
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
|+.++++.+.|+||+++.||++++++|.||.+++.......|.--|.+. +++.....+++++.|++++..+.+
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv--v~~~~~~ieqL~kQL~KLidVl~V 73 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV--VPGDDRTIEQLTKQLYKLVNILKV 73 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE--EECCHHHHHHHHHHHHHHhHhhEE
Confidence 4789999999999999999999999999999998865444555444444 444322388999999999888764
No 39
>PRK08577 hypothetical protein; Provisional
Probab=98.06 E-value=2.5e-05 Score=66.07 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=57.7
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 35 ~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
-..+....+-|++.+.|++|+++.|++.|+++|+||.++++.....++.+.+.+.+++++.....+++.+.|+++
T Consensus 49 ~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l 123 (136)
T PRK08577 49 IALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKL 123 (136)
T ss_pred cCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcC
Confidence 344556689999999999999999999999999999998875443356677888888875323456666666553
No 40
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=3e-05 Score=55.70 Aligned_cols=49 Identities=22% Similarity=0.134 Sum_probs=37.8
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC---CCCeEEEEEEEEeC
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFD 93 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~---l~G~FfMrmeVdv~ 93 (306)
+.+.++|+||.+++|++.++++|+||.++++.... ..+...+.+.+++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 35788999999999999999999999999875432 23555555666653
No 41
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.94 E-value=3.8e-05 Score=57.03 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=42.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~ 94 (306)
-+.+.++|++|+.++|++.|+++|+||..+++... ..|.+.+.+.++..+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~ 51 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTST 51 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCc
Confidence 36889999999999999999999999999998542 247788888887654
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=0.00015 Score=53.19 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=39.6
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~ 93 (306)
+++|.|+||+|+++.+++.|+++|+||.+++.... .+.....+.+..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECC
Confidence 68899999999999999999999999999998644 4555556666543
No 43
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=0.00015 Score=56.01 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=47.5
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
+-|+|.++||+|+.+++++.|+.+|.||.+.+-+... .|+-.=.+.|.-. ...+.++|++++++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~-dG~~LDtF~V~d~-~~~~~~~~~~~~~~ 65 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTD-DGLALDIFVVTGW-KRGETAALGHALQK 65 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcC-CCeEEEEEEEecC-CccchHHHHHHHHH
Confidence 3578999999999999999999999999999888653 4553323334322 23466788888765
No 44
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=0.00013 Score=52.49 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=44.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
.+++.++|++|+++.+++.|+++|+||.++.+... ..+.+.+.+.++ +. ...+++.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~--~~-~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELE--GV-GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEe--cc-ccHHHHHHHHhC
Confidence 57899999999999999999999999999988643 245555555554 21 234455555554
No 45
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.81 E-value=7.6e-05 Score=79.54 Aligned_cols=70 Identities=13% Similarity=-0.019 Sum_probs=56.9
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CCHHHHHHHHHHHHh
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSK 111 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~-~~~eeLreaL~~la~ 111 (306)
.....|+|.|+||||++|.|+++|+.+|+||++.+.++ .+|++...+.|.-+... ...++++++|.+...
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 56678999999999999999999999999999999986 57898888888743322 335778888877643
No 46
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.00017 Score=52.46 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=48.4
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
|.|.+.+.|++|+++.+++.++++|+||..+.+.....++...+.+.++.. +.+++++.++++.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHHc
Confidence 457899999999999999999999999999987533222555566666532 56777777766543
No 47
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.00019 Score=53.25 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=48.3
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
|.+.++||+|+++.|++.+++.|+||.+++.... ..|...+.+.+++. +.++|.+-++++.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~----~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAP----SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcC----CHHHHHHHHHHHhc
Confidence 6788999999999999999999999999887532 24777777777765 35666666665543
No 48
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.79 E-value=7.7e-05 Score=54.90 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=43.6
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
+.+++..+|+||.++++++.++++|+||..+.+......+.-.+++.++.++ +.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence 5688999999999999999999999999998765432111222345554321 45566666654
No 49
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.79 E-value=7.2e-05 Score=54.82 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=44.7
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
+++.++|++|+++.|++.|+++|+||.++.-.....++...+++.++.+ ..+++.++|++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~----~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP----VPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC----CCHHHHHHHHc
Confidence 5779999999999999999999999998865433245667777777642 23466666654
No 50
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.72 E-value=0.00014 Score=51.98 Aligned_cols=62 Identities=21% Similarity=0.088 Sum_probs=45.1
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~ 107 (306)
.|.+.+.|++|+++.+++.++++|+||..+.+.....++...+.+.++..+ ...+++.+.|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD--DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH--HHHHHHHHHHh
Confidence 367889999999999999999999999999886432356666777776431 23444444444
No 51
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.70 E-value=0.0004 Score=53.51 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=32.4
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
+++.+.|+||+|+.|++++.|+++|+||.+.+-++
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T 35 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVST 35 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence 36899999999999999999999999999988875
No 52
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.68 E-value=0.0004 Score=52.45 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=37.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
.+.|.|+||+|+.++|++.|+++|+||.+.+-++. .+|+-.-.+.|.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~ 49 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVL 49 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEE
Confidence 57899999999999999999999999999887644 235544455554
No 53
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.65 E-value=0.00018 Score=49.44 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.1
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~ 94 (306)
|.+.++|++|+++.+++.++++++||.++.+... ..+...+.+.++.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC
Confidence 4678999999999999999999999999987543 235566777777653
No 54
>PRK04435 hypothetical protein; Provisional
Probab=97.64 E-value=0.00026 Score=61.28 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=52.4
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 021895 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (306)
Q Consensus 38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~ 107 (306)
-...+..|++.++|++|+.++|.+.|+++|+||+.++|... ..|...+.+.++..+....+++|.+.|+
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~~~~~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSSMEGDIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCChHHHHHHHHHHHH
Confidence 46677899999999999999999999999999999999653 3577777888877643223334444333
No 55
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.62 E-value=0.00036 Score=49.59 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=44.1
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
+.+.++|++|+++.|++.|+++|+||.++........|...+.+.++ . . ..+++.+.|++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~--~-~-~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD--S-P-VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC--C-C-CCHHHHHHHHc
Confidence 57789999999999999999999999999886432235655566553 2 2 34566666654
No 56
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00012 Score=75.00 Aligned_cols=127 Identities=16% Similarity=0.170 Sum_probs=89.7
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC-ChhHHHHHHhCCCCEEEeCC--CCCChHHHHHHHhc--
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCA--KENEREEELLELVQ-- 203 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-~~~~~~~A~~~gIp~~~~~~--k~~~~e~e~~~~v~-- 203 (306)
+||||.+-.- .=++.....+.. .+||+.|.+-+|+.- ..+..--|++-|+|++..++ +.++.-.+++++.+
T Consensus 1 mkiaiigqs~--fg~~vy~~lrk~--gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~~ 76 (881)
T KOG2452|consen 1 MKIAVIGQSL--FGQEVYCHLRKE--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQAL 76 (881)
T ss_pred CeeEEechhh--hhHHHHHHHHhc--CceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHhh
Confidence 5788876443 123333333222 489999999887532 23444457888999988763 33322256777766
Q ss_pred CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCCcHHHHHHHHH
Q 021895 204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQVGCFT 283 (306)
Q Consensus 204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga~p~~~A~~~~ 283 (306)
.+++-||-=.-| .++-++.+.+.++-|-.|||+||+.||+.+++|.+.-.
T Consensus 77 gaelnvlpfcsq------------------------------fip~ei~~ap~~~siiyhps~lp~hrgasainwtli~g 126 (881)
T KOG2452|consen 77 GAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHG 126 (881)
T ss_pred cccccccchhhh------------------------------ccchhhcccccCCceeeccccCccccCccccceEEEec
Confidence 789989876666 99999999999999999999999999999999975544
Q ss_pred hhcCce
Q 021895 284 FCLGNL 289 (306)
Q Consensus 284 ~~l~~~ 289 (306)
=.-||+
T Consensus 127 d~~~g~ 132 (881)
T KOG2452|consen 127 DKKGGF 132 (881)
T ss_pred cccCce
Confidence 444443
No 57
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=97.49 E-value=0.0011 Score=60.24 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=48.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
-+++....+||...++|..++++|+||+-.+|+...++..-+..|+++ + ..+.+.|.+.++..
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE--g-i~d~e~l~~~lks~ 66 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE--G-IDDFEKLLERLKSF 66 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee--C-CCCHHHHHHHhhcc
Confidence 467788999999999999999999999999999765443445556654 2 23678888777653
No 58
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.00063 Score=48.61 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=42.5
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
|++.++|++|+++++++.|+++|+||..+.+.....++...+. +.+.+. ..+++.+.|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~--~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP--IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC--CCHHHHHHHHc
Confidence 5788999999999999999999999999887532123444444 444432 45566666654
No 59
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.46 E-value=0.00045 Score=54.43 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=49.8
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
|++.+++.-.++||+.++|++.++.+|.||..++.-.....|..-|.+.+.-+ +...+++...|++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~K 66 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKK 66 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhC
Confidence 46889999999999999999999999999999988655556766666665422 2244555555544
No 60
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.42 E-value=0.0012 Score=48.55 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
-+++..+|++|..+++++.++++|+||..+........+.=.+++.++.+ +.+++.+.|++
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHH
Confidence 46788999999999999999999999999876543233444455555532 34567777765
No 61
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.38 E-value=0.0016 Score=49.31 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=31.6
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id 78 (306)
-++|..+||+|+.++|++.|+++|+||.....+..
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~ 37 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ 37 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC
Confidence 46889999999999999999999999999987643
No 62
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.33 E-value=0.00061 Score=48.42 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=37.9
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
+++..+|+||.++++++.|+++|+||..+...... ++.-.+++.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence 35678999999999999999999999999876443 46677777775
No 63
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.33 E-value=0.0013 Score=49.68 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=43.3
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la 110 (306)
|.+.|.||+|+++.|++.+++.|+||..++.... +. +.+.+++. +.++|..-++++.
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~----~~~~L~~li~~L~ 59 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTI----EFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEec----CHHHHHHHHHHHh
Confidence 6788999999999999999999999999998532 33 66666654 3556555555443
No 64
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.30 E-value=0.0012 Score=51.86 Aligned_cols=67 Identities=7% Similarity=0.097 Sum_probs=52.0
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
+|++.+++.-.++||+++.|++.+..+|.||..++.-...+.+.-.|.+.++ .+...+++...|+++
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL 67 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKL 67 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcC
Confidence 4688999999999999999999999999999999887544455555555553 244677777777654
No 65
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.27 E-value=0.001 Score=59.07 Aligned_cols=67 Identities=19% Similarity=0.131 Sum_probs=50.2
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
|+.++++.-+|+||..++|++.++++|+||..+........|...|.+.++.+ +...+++...|+++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~--~~~i~qi~kQl~KL 67 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD--EQVIEQITKQLNKL 67 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999987654335666666666643 22455555555543
No 66
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.27 E-value=0.0017 Score=42.07 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.8
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id 78 (306)
+++.|+|++|+++++++.|+++|+||..+.+...
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4788999999999999999999999999988643
No 67
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.26 E-value=0.00046 Score=50.24 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=43.4
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
+++.+.|++|.++.+++.++++|+||..+.... ..|...|.++++.+ ..+++.+.+++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSE----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCC----CCHHHHHHHHc
Confidence 577899999999999999999999998876532 24677777776643 34555555553
No 68
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.20 E-value=0.0014 Score=46.96 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=41.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
++++.=+|+||.++++++.|+++|+||..+.++.....|.- ++.+.++. .+.+.+.|++
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~--~v~~~ve~----~~~~~~~L~~ 59 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKA--LLIFRTED----IEKAIEVLQE 59 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeE--EEEEEeCC----HHHHHHHHHH
Confidence 35667799999999999999999999999887543222332 34454432 5566666654
No 69
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.20 E-value=0.00074 Score=53.02 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=31.1
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
.||.|.|+||||+.+.|+..|++.|++|....-.
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~ 35 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID 35 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe
Confidence 4899999999999999999999999999986554
No 70
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0024 Score=47.74 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=28.9
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
+++.=+|+||..+++++.++++|+||+.+.+.-
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 455669999999999999999999999997653
No 71
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.12 E-value=0.0017 Score=52.29 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=50.7
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
|+.+|++.=.|+||+.++||+.+..+|.||..++--.....|.--|.+.++..+ ....+++...|+++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-~~~ieqI~kQL~Kl 68 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-DTSLHILIKKLKQQ 68 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-HHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999887666667777777775322 22345555555443
No 72
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.11 E-value=0.0034 Score=46.30 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=40.8
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
.+++.-+|+||..+.|++.|+++|+||..+-.+... +.-.+|+.+ + +.++..+.|++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~--~~~~~rl~~--~----~~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTS--EFGILRLIV--S----DPDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecC--CCCEEEEEE--C----CHHHHHHHHHH
Confidence 466778999999999999999999999998765432 233334444 2 24566666654
No 73
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.09 E-value=0.0024 Score=49.73 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=31.7
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
.||.|.++||||+.+.|++.|+++|++|....-.+
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT 36 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS 36 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee
Confidence 58999999999999999999999999999876543
No 74
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.05 E-value=0.0023 Score=56.57 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=49.3
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
+.++++.-+|+||..++|++.++++|+||..+...-....|...|.+.++.+ +...+++...|+++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d--~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD--DKVLEQITKQLNKL 66 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcC
Confidence 3678999999999999999999999999999887654445676677777642 22455555555543
No 75
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.03 E-value=0.005 Score=47.05 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=44.9
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
-+++.-+|++|..++|.+.++++|+||..+...-... .+.+..+++++.. .+.+.+++.++.+.+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence 3455668999999999999999999999987653322 3345555555532 345667777766554
No 76
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.97 E-value=0.0049 Score=46.34 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=27.5
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 46 TViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
.+.-+|+||..+.|-+.++++|+||..+...
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Sr 33 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESR 33 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEee
Confidence 4555899999999999999999999999664
No 77
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.91 E-value=0.0021 Score=69.08 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=44.4
Q ss_pred cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC--CCeEEEEEEEE
Q 021895 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFI 91 (306)
Q Consensus 33 ~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l--~G~FfMrmeVd 91 (306)
+-...+.....++.|.|+||||+++.|+++|+++|+||.+.+-.+... ...|++.....
T Consensus 770 ~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g 830 (850)
T TIGR01693 770 TILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG 830 (850)
T ss_pred EEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCC
Confidence 334445566799999999999999999999999999999987765422 23466544443
No 78
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.86 E-value=0.0045 Score=51.01 Aligned_cols=67 Identities=15% Similarity=0.018 Sum_probs=48.5
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
+.+.+|++.-.|+||+.++||+.++.+|.||..++.--....+.=-|.+.+. + +...+++...|+++
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~KL 72 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEKL 72 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhCC
Confidence 4558999999999999999999999999999998775444444444555554 2 23456666555554
No 79
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.77 E-value=0.006 Score=55.48 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=42.0
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv 92 (306)
...|-+...||||+|+.|++.|.++|+||-.++-.-...+|.=.|.+.+|-
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 446677779999999999999999999999998764445677778888873
No 80
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.026 Score=44.34 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=30.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
++-|.|+||||+.+.|++.++++|++|....-.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~ 34 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFS 34 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence 688999999999999999999999999986654
No 81
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.35 E-value=0.013 Score=43.97 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=43.3
Q ss_pred CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 51 DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
|++|++..|++.+...|.||..++.......+..-|.+.++-++ ...++|...|+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--REIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--CHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--hhHHHHHHHHhcc
Confidence 68999999999999999999999988766678877777777532 3566766666654
No 82
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.02 Score=44.38 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=47.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCC---CCCHHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI---KWPREQMDEDFFK 108 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~---~~~~eeLreaL~~ 108 (306)
+|||-|||+.|+=..+++.+.+-|.+|..-+..+| |+...++..-++.. +..-+-|+..|..
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTD---GkWCyiv~wVv~~~~~~~~rW~lLK~RL~~ 66 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTD---GRWCYIVFWVVPRPPSIKVRWDLLKNRLMS 66 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccC---CcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence 78999999999999999999999999999887554 66544444434432 4566777777764
No 83
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.19 E-value=0.013 Score=63.98 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=51.9
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCC-C----CCHHHHHHHHHHH
Q 021895 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI-K----WPREQMDEDFFKL 109 (306)
Q Consensus 35 ~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~-~----~~~eeLreaL~~l 109 (306)
...+......|+|+|+||+|+.+.|+++|+.+|+||.+.+.++.. +|.-.-.+.|..+.. . ...+.+++.|...
T Consensus 725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~-dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 803 (931)
T PRK05092 725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT-DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDA 803 (931)
T ss_pred EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec-CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Confidence 344555678999999999999999999999999999999987642 344222344532221 1 1255677777665
Q ss_pred H
Q 021895 110 S 110 (306)
Q Consensus 110 a 110 (306)
.
T Consensus 804 l 804 (931)
T PRK05092 804 L 804 (931)
T ss_pred H
Confidence 4
No 84
>PRK07334 threonine dehydratase; Provisional
Probab=96.18 E-value=0.033 Score=54.99 Aligned_cols=68 Identities=13% Similarity=0.015 Sum_probs=51.8
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id---~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
-++.+.-|.+.+.||+|+++.|++.|++.++||.+++.... ...+...+.+.+++. +.++|.+-++++
T Consensus 322 ~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~----d~~~L~~vi~~L 392 (403)
T PRK07334 322 RAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR----DAAHLQEVIAAL 392 (403)
T ss_pred hCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC----CHHHHHHHHHHH
Confidence 34455788999999999999999999999999999987532 135777788888875 355555555543
No 85
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.12 E-value=0.022 Score=61.19 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=42.0
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
.+.....+|+|.|+||||++++||+.|+++|+||.+.+-++. +++-.=.+.|.
T Consensus 702 ~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~--g~~a~D~F~V~ 754 (774)
T PRK03381 702 GASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL--GADVVDVFYVT 754 (774)
T ss_pred CCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec--CCeEEEEEEEE
Confidence 444456899999999999999999999999999999988764 44433344443
No 86
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.86 E-value=0.04 Score=59.25 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=55.6
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
....-|.|.+.||+|+++.|++.+++.++||.+++...+..++.+.|.+.+++.+ .++|.+-+..+.+--|
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~~i~~ 734 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLNQVPD 734 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHhcCCC
Confidence 3456889999999999999999999999999999875433357788898888863 6777776666554434
No 87
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.86 E-value=0.02 Score=57.04 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=47.7
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
....+.|++.-.|+||+|++|++.|+++|+||-+++-. +.++.=.|.+++|- . ..+++.+.+++
T Consensus 335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A~~iie~D~---~-~~~~~~~~i~~ 398 (409)
T PRK11790 335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIGYVVIDVDA---D-YAEEALDALKA 398 (409)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEEEEEEEeCC---C-CcHHHHHHHHc
Confidence 34667888899999999999999999999999888774 33456666666653 2 23566666664
No 88
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.84 E-value=0.037 Score=41.21 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.9
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 46 TViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
+|.=|||||-.+++.+.+++ |.||++++.-
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~ 31 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR 31 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE
Confidence 56669999999999999999 9999999774
No 89
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=95.52 E-value=0.017 Score=43.28 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=30.0
Q ss_pred cEEEEEEcC----CccchHHHHHHHHHhcCCeEeEeee
Q 021895 42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 42 k~ILTViGp----DRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
-..|++.|+ |.+|++|++++.|+++|+||..++.
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS 43 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISS 43 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEE
Confidence 357899999 8999999999999999999999983
No 90
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.44 E-value=0.078 Score=56.41 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=54.2
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
.-.+-|.+.+.||+|+++.|++.|++.++||.+++.... ..+.+.|.+.+++. +.++|..-+.++-+-
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~----~~~~L~~ii~~L~~i 675 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIK----NYKHLLKIMLKIKTK 675 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEEC----CHHHHHHHHHHHhCC
Confidence 455688999999999999999999999999999987543 35777788888876 467777766665433
No 91
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.39 E-value=0.08 Score=56.60 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=54.6
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
....-|.+.+.||+|+++.|++.+++.++||.+++.... ..+.+.|.+.+++.+ .++|..-+.++.+--|
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr~i~~ 693 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIRVMPD 693 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCC
Confidence 445688999999999999999999999999999996433 346778888888763 5677776666554333
No 92
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=95.36 E-value=0.1 Score=37.49 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=43.3
Q ss_pred EEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 44 ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
.+++.| +|++|+.+++.+.|+++|+||.-+.|.... .+. +.+.|.+++. +.+...+.+.+..++++
T Consensus 3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~~--~~is~~v~~~--d~~~~~~~l~~~~~~~~ 69 (75)
T cd04913 3 KITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DGT--TDISFTVPKS--DLKKALAVLEKLKKELG 69 (75)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CCc--EEEEEEecHH--HHHHHHHHHHHHHHHcC
Confidence 344443 689999999999999999999988885432 222 3444544432 45555666666555554
No 93
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=95.32 E-value=0.069 Score=46.91 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=53.1
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
.+-|.+.=.||.|+.++|=..+|+.+|||+-++|++ +.+|+-...+-++......+.+.+-+.|.+
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ii~kl~k 137 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKIIEKLRK 137 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHHHHHHHhc
Confidence 356777889999999999999999999999999986 578998888888876655555555555543
No 94
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.95 E-value=0.12 Score=56.41 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=48.1
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHH
Q 021895 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF-DPIKW----PREQMDEDFFKLS 110 (306)
Q Consensus 38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv-~~~~~----~~eeLreaL~~la 110 (306)
+.....+|.|.|+||||+++.|+++|+++|+||.+..-.+. +++-.=.+.|.- .+... ..++++++|.+..
T Consensus 839 ~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~--~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L 914 (931)
T PRK05092 839 ASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVDVFYVTDLFGLKITNEARQAAIRRALLAAL 914 (931)
T ss_pred CCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc--CCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHh
Confidence 34456899999999999999999999999999999888754 344222333322 11111 1345666666544
No 95
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.92 E-value=0.2 Score=54.55 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=43.2
Q ss_pred CCCCCcc-cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 021895 26 KFPGEPI-ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV 83 (306)
Q Consensus 26 ~~~~~~~-~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~ 83 (306)
.|+.+|. +....+.....+|.|.++||||+.|.|++.|+++|+||.+..-++. +|+
T Consensus 769 ~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~--~~~ 825 (856)
T PRK03059 769 HFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL--GER 825 (856)
T ss_pred CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec--CCE
Confidence 3444432 2334555677899999999999999999999999999999877654 454
No 96
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=94.74 E-value=0.12 Score=50.21 Aligned_cols=73 Identities=15% Similarity=-0.011 Sum_probs=47.6
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee---ccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF---VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 35 ~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~---id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
.+..+...+.+++.=|||||..+++++.++++|+||+++... .....+.-...+.++..+ ....+++.+.|++
T Consensus 298 gl~~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~ 373 (380)
T TIGR01127 298 GLVKSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD 373 (380)
T ss_pred HHHhCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 344455666778888999999999999999999999999654 111124433444444432 1234455555554
No 97
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.72 E-value=0.041 Score=56.45 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=46.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
....|.+...|+||+|+.|++.|+++|+||-.++..-...+|.-.|.+++|- ..+ +++.+.+++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~---~v~-~~~l~~i~~ 514 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD---PVP-EEVLEELRA 514 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC---CCC-HHHHHHHhc
Confidence 3355566679999999999999999999999987754344567777777763 233 445555554
No 98
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.62 E-value=0.21 Score=54.58 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=41.7
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEE
Q 021895 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF 90 (306)
Q Consensus 37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeV 90 (306)
.+......|+|.++||+|+.+.|+++|+.+|+||.+.+-++. .+|+..=.+.|
T Consensus 696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V 748 (884)
T PRK05007 696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIV 748 (884)
T ss_pred cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEE
Confidence 344567899999999999999999999999999999986654 24665433444
No 99
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.61 E-value=0.2 Score=54.44 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=42.1
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
.+......|+|.++||+|+.|.|+++|+.+|+||.+.+-++. .+|+..=.+.|.
T Consensus 672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~ 725 (854)
T PRK01759 672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVT 725 (854)
T ss_pred cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEe
Confidence 444556799999999999999999999999999999886543 346644444443
No 100
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.56 E-value=0.14 Score=55.95 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=46.7
Q ss_pred CCCcccCC--CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 28 PGEPIESS--VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 28 ~~~~~~~~--~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
.++|+.-. ..|...-.-|+|.++||+|+.|.|+++|+.+|+||++.+-++. ..|+-.=.+.|.
T Consensus 674 ~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~ 738 (869)
T PRK04374 674 IGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVL 738 (869)
T ss_pred CCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEe
Confidence 44454332 2455566789999999999999999999999999999988864 346644445554
No 101
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.51 E-value=0.17 Score=38.54 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=40.3
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 46 TViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
.+.-+|+||-.+.|=+.++++|+|+..+...-... .+.|..-++++. ..+.+++.++.+.+
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~-----~~~~~~~~l~~L~~ 65 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV-----DRGDLDQLISSLRR 65 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc-----ChHHHHHHHHHHHH
Confidence 34448999999999999999999999998863222 223333344442 23456666666543
No 102
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.46 E-value=0.042 Score=56.39 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=44.8
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
..+.+...|+||+|+.|++.|.++++||-.++-.-...+|.-.|.+++|-+ .+ +++.+.+.+
T Consensus 452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~---v~-~~~l~~i~~ 513 (525)
T TIGR01327 452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP---VP-DEVLEEIKA 513 (525)
T ss_pred cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC---CC-HHHHHHHhc
Confidence 445556699999999999999999999988776544445777777877732 33 444455543
No 103
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.43 E-value=0.45 Score=38.32 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=47.2
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
.-|.+..+|++|-.+.+=+.++++|+|+..+...-... .+.|..-++++.. ..+.+++.++.+.+.+++
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~----~~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK----SAPALDPIIKSLRNDIGA 84 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----CCHHHHHHHHHHHHHhCC
Confidence 33445559999999999999999999999998853221 2223323334322 237788888888777764
No 104
>PRK08198 threonine dehydratase; Provisional
Probab=94.19 E-value=0.092 Score=51.57 Aligned_cols=44 Identities=27% Similarity=0.234 Sum_probs=37.3
Q ss_pred cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 33 ~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
+..+......+-+.|.=+|+||..+++.+.+++.|+||+++++.
T Consensus 318 ~~gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 318 ERGLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred HhhhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 44445566667788888999999999999999999999999885
No 105
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.02 E-value=2.2 Score=37.19 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=73.2
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeee
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~Ff-MrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl 122 (306)
=|++.-..|||-.+.+++.|.++|+||-..+- .++|.|- .||.|+-| ++-.+.|++. |. +.+.
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~ti---Adt~dFGIiRmvV~~~------d~A~~~Lee~----gF---~Vr~ 68 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTI---ADTGDFGIIRMVVDRP------DEAHSVLEEA----GF---TVRE 68 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEe---ccccCcceEEEEcCCh------HHHHHHHHHC----Cc---EEEe
Confidence 36778899999999999999999999988876 4467775 67777532 3345555532 22 3444
Q ss_pred cCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeE-EEEEeeCCCCC-------CChhHHHHHHhCCCCEE
Q 021895 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE-ITCVISNHDRG-------PNSHVIRFLERHGIPYH 185 (306)
Q Consensus 123 ~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~-I~~Visn~~~~-------~~~~~~~~A~~~gIp~~ 185 (306)
++ =+||=.-.....|..++.....-.++.+ |.+-++-.++. .-..+++..+..||++.
T Consensus 69 ~d-----VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~ 134 (142)
T COG4747 69 TD-----VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKLI 134 (142)
T ss_pred ee-----EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCeec
Confidence 33 3444444444456666666555544432 33444333211 01245667788888864
No 106
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.78 E-value=0.33 Score=52.48 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=37.0
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV 83 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~ 83 (306)
.....|+|.++||+|+.+.|++.|+.+|+||.+.+-++.. +|+
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~-~g~ 708 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTK-DGV 708 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEec-CCE
Confidence 4567899999999999999999999999999999887432 454
No 107
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.76 E-value=0.38 Score=52.45 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=42.8
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
..+.....-|+|.++||+|+-|.++++|+.+|.||.+.+-++.. +|.-.=.+.|.
T Consensus 672 ~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~-~g~~ld~f~V~ 726 (856)
T PRK03059 672 LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTR-HGYALDTFQVL 726 (856)
T ss_pred ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcC-CCeEEEEEEEe
Confidence 34455567899999999999999999999999999999887543 45533344443
No 108
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.55 E-value=0.16 Score=55.54 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=35.3
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
......+|.|.++||||+.+.|++.|++.|+||....-.+
T Consensus 804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T 843 (884)
T PRK05007 804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT 843 (884)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec
Confidence 3466789999999999999999999999999999966654
No 109
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.53 E-value=0.35 Score=52.94 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=41.2
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
+.....+|.|.++||||+.+.|+++|+++|+||.+..-++. +|+-.=.+.|.
T Consensus 810 ~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~--g~~v~D~F~V~ 861 (895)
T PRK00275 810 AQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL--GERVEDVFFIT 861 (895)
T ss_pred CCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec--CCEEEEEEEEE
Confidence 34456799999999999999999999999999999887654 45533344443
No 110
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.52 E-value=0.47 Score=51.96 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=42.0
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEE
Q 021895 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF 90 (306)
Q Consensus 36 ~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeV 90 (306)
..+.....+|.|.++||||+.+.|+++|+++|+||.+..-++. +++-.=.+.|
T Consensus 790 ~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~--g~~a~D~F~V 842 (869)
T PRK04374 790 ESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF--GERAEDQFQI 842 (869)
T ss_pred ecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec--CCEEEEEEEE
Confidence 3455567899999999999999999999999999999887754 4443333444
No 111
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=93.47 E-value=0.68 Score=31.91 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.4
Q ss_pred EEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 44 ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
+|+++|. +++|+++++.+.|+++|+|+.-+.|..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5788877 889999999999999999999998853
No 112
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.46 E-value=0.29 Score=53.59 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=40.2
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
.-..|+|.|+||+|+-+.++++|+.+|+||.+.+-++. ..|+..=.+.|.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~ 752 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVL 752 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEe
Confidence 45689999999999999999999999999999987654 346644445553
No 113
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=93.46 E-value=0.72 Score=41.49 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=54.5
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
.|+-++++.=.|.+|..+.|++++++.|.||..+.--.....+ .-||.+-+.+.....+++...|+++-.-+++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~--~SRiTivv~g~~~~~EQi~kQL~kLidV~kV 75 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPG--LSRITIVVSGDEQVLEQIIKQLNKLIDVLKV 75 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCC--ceEEEEEEcCCcchHHHHHHHHHhhccceeE
Confidence 4677888888999999999999999999999998776444444 3344444443334578888888887665553
No 114
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.10 E-value=0.44 Score=47.42 Aligned_cols=50 Identities=16% Similarity=0.059 Sum_probs=35.8
Q ss_pred cEEEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 021895 42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (306)
Q Consensus 42 k~ILTViGp-DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv 92 (306)
.+-|.+.=+ |+||.++.|.+.|+++|+||.+++-.-.+ .+.|..+++|.-
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~~~ 345 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGFEP 345 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEEec
Confidence 334444446 99999999999999999999998874333 344444566653
No 115
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.82 E-value=0.53 Score=50.62 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=56.2
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhh
Q 021895 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (306)
Q Consensus 39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~el 113 (306)
..-.+-|.|.+-||+|+.+.|++.|++.++||+.++...+ ..+.+.|.+.+.+.+ ..+|..-+.++-+.-
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~~~~ 693 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLKQLP 693 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHhcCC
Confidence 4556788999999999999999999999999999999765 456677888888764 567777666654433
No 116
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=92.71 E-value=0.85 Score=42.88 Aligned_cols=80 Identities=26% Similarity=0.294 Sum_probs=54.5
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC--------Ch-hHHHHHHhCCCCEEEeCCCC-CChH-HH
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NS-HVIRFLERHGIPYHYLCAKE-NERE-EE 197 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~--------~~-~~~~~A~~~gIp~~~~~~k~-~~~e-~e 197 (306)
+|+++|.||.--...++..+++.| .+|.+.++-++..+ |. .+...|+..|||+....... .++| ++
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 478889998754455777788887 78888776654432 33 34556899999988877443 3334 56
Q ss_pred HHHHhc--CCcEEEEe
Q 021895 198 LLELVQ--NTDFLVLA 211 (306)
Q Consensus 198 ~~~~v~--~~D~vVlA 211 (306)
+.+++. +.|.||.-
T Consensus 78 L~~~l~~l~~d~iv~G 93 (223)
T COG2102 78 LKEALRRLKVDGIVAG 93 (223)
T ss_pred HHHHHHhCcccEEEEc
Confidence 777776 67888763
No 117
>PRK06382 threonine dehydratase; Provisional
Probab=92.60 E-value=0.46 Score=47.11 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=47.8
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec---cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV---PEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 35 ~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i---d~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
.+.-......+++.=+|+||..++|++.|+++|+||+++...- ....+.-...+.++..+ ....+++.+.|++
T Consensus 323 ~~~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~ 398 (406)
T PRK06382 323 ELENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALRE 398 (406)
T ss_pred HHHhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 3444556677888889999999999999999999999987641 12233333444444431 1123356666654
No 118
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=92.58 E-value=0.17 Score=54.98 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=35.3
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
......+|.|.++||||+.+.|++.|++.|+||....-.+
T Consensus 779 ~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T 818 (854)
T PRK01759 779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT 818 (854)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc
Confidence 4456689999999999999999999999999999976654
No 119
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=92.50 E-value=1.5 Score=31.27 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=30.0
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 43 ~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
.++++.| ++.+|+.+++.+.|+++|+|+.-+.|.
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~ 38 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQG 38 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4678888 488999999999999999999998884
No 120
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.48 E-value=0.26 Score=44.36 Aligned_cols=70 Identities=23% Similarity=0.140 Sum_probs=48.6
Q ss_pred CCCCCcccEEEEEEc--CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 35 SVSPTLTHGIHVFHC--PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 35 ~~~p~~~k~ILTViG--pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
+++|.+---||++.- .+.+||+|+|++.++++||+|.++-...+..++.=+.++.++- ..+ .++-.+|.+
T Consensus 86 ~vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~---~iP-~~li~el~~ 157 (167)
T COG2150 86 DVAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER---PIP-GDLIDELKK 157 (167)
T ss_pred HHHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec---cCC-HHHHHHHhc
Confidence 466777777777775 5679999999999999999999876654445555555666652 222 345555543
No 121
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.42 E-value=0.34 Score=47.10 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=32.5
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
..-+-|.|.=||+||.+|.|++.|++.|+||.|+.--
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~ 324 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL 324 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence 3457788888999999999999999999999998763
No 122
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=92.19 E-value=0.24 Score=47.77 Aligned_cols=68 Identities=21% Similarity=0.132 Sum_probs=53.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la 110 (306)
.+-++.+.=.|-+|++..|++.||.+|.||..+---..+....|.|.+.+.-.+ .-.+|.++.++++-
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd--~VveQa~rQiedlV 143 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD--GVVEQARRQIEDLV 143 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH--HHHHHHHHHHHHhh
Confidence 456788888999999999999999999999987665556677898888886432 23667777776654
No 123
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.59 E-value=0.76 Score=35.81 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=26.8
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
.++.|.=|||||-.+++.+.|+ ++||.+...-
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~ 33 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYR 33 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence 3567777999999999999999 7888887663
No 124
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.55 E-value=1.9 Score=33.34 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=39.9
Q ss_pred EcCCccchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 48 iGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~-G~FfMrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
.-+|++|-.+.+=+.++++|+|+..+...-.... +.|..-++++ . ..+.+++.++++.+.
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e--~---~~~~i~~~l~~l~~~ 66 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE--C---DQRRLDELVQLLKRE 66 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE--c---CHHHHHHHHHHHHHh
Confidence 3389999999999999999999999988643222 2232223333 2 234677777766543
No 125
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.41 E-value=1.8 Score=30.99 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=30.4
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
.+|+++|. +++|+.+++-+.|+++|+|+.-+.|..
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 46788886 789999999999999999999998843
No 126
>PRK06349 homoserine dehydrogenase; Provisional
Probab=91.23 E-value=1 Score=45.05 Aligned_cols=68 Identities=10% Similarity=-0.060 Sum_probs=47.4
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (306)
Q Consensus 38 p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la 110 (306)
....+|.|.+.-.|++|+.++|++.++++|+||..+.|.... .+.--+.+..+. .+..++++.++++.
T Consensus 344 ~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~-~~~~~ivivT~~----~~e~~l~~~i~~L~ 411 (426)
T PRK06349 344 EIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAG-GEGAEIVIVTHE----TSEAALRAALAAIE 411 (426)
T ss_pred HhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCC-CCceeEEEEEEe----CCHHHHHHHHHHHh
Confidence 345679999999999999999999999999999999886321 122222233331 23466666666544
No 127
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=91.22 E-value=3.1 Score=45.32 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=72.9
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 39 ~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
..+-.+|+++|. +++|+.+++-+.|++.|+||.-++|... +-.. -+.++ .++..++++.+-++|-.
T Consensus 393 ~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS--e~~I--s~vV~-------~~d~~~al~~LH~~f~~ 461 (819)
T PRK09436 393 EENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS--ERSI--SVVID-------NDDATKALRACHQSFFL 461 (819)
T ss_pred eCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc--cceE--EEEEc-------HHHHHHHHHHHHHHHhc
Confidence 345689999997 7899999999999999999999998533 1112 22232 34566777777677742
Q ss_pred ccceeeecCCCCCceEEEEEeCC-cchHHHHHHhhh----cCCCCeEEEEEe
Q 021895 116 MRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ----EGKLPVEITCVI 162 (306)
Q Consensus 116 ~~~~~rl~~~~~~~riavl~S~~-g~~L~~ll~~~~----~g~l~~~I~~Vi 162 (306)
..++.+|++++-|. |..+..+|...+ .-.+..+|++|.
T Consensus 462 ---------~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~ 504 (819)
T PRK09436 462 ---------SDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA 504 (819)
T ss_pred ---------ccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 23688999999987 677777775432 113567777764
No 128
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.22 E-value=2 Score=30.47 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=30.6
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
.+++++|. +++|+.+++-+.|+++|+|+.-+.|..
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 46788885 789999999999999999999998853
No 129
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.14 E-value=0.58 Score=45.53 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=46.1
Q ss_pred CCceEEEEEeCC-cch-HHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH--h
Q 021895 127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--V 202 (306)
Q Consensus 127 ~~~riavl~S~~-g~~-L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~--v 202 (306)
++.||+|+++|. |+. +..++. .+ ..++++|+... +++..+++|+++|+|+.+- .-+++++. .
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~---~~--~velvAVvdid---~es~gla~A~~~Gi~~~~~------~ie~LL~~~~~ 68 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR---SE--HLEPGAMVGID---PESDGLARARRLGVATSAE------GIDGLLAMPEF 68 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc---CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCcccC------CHHHHHhCcCC
Confidence 468999999998 444 333322 22 37999988764 4556778899999998651 12344442 1
Q ss_pred cCCcEEEEec
Q 021895 203 QNTDFLVLAR 212 (306)
Q Consensus 203 ~~~D~vVlA~ 212 (306)
.+.|+++.+-
T Consensus 69 ~dIDiVf~AT 78 (302)
T PRK08300 69 DDIDIVFDAT 78 (302)
T ss_pred CCCCEEEECC
Confidence 3577777754
No 130
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=90.65 E-value=2.3 Score=39.56 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc--chHHHHHHhhhc-CCCCeEEEEEeeCCCCC--CChhHHH
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRG--PNSHVIR 175 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g--~~L~~ll~~~~~-g~l~~~I~~Visn~~~~--~~~~~~~ 175 (306)
.+.+.+.+..++++| ..+..||+|.+||.. .+|-.++..++. ...+.++.+|-.|+.-. ....+.+
T Consensus 11 ~~~~~v~~~i~~~~l---------i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~ 81 (258)
T PRK10696 11 RLRRQVGQAIADFNM---------IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPE 81 (258)
T ss_pred HHHHHHHHHHHHcCC---------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHH
Confidence 455555555566663 123458999999974 566666655442 33446888888776321 1235688
Q ss_pred HHHhCCCCEEEeC
Q 021895 176 FLERHGIPYHYLC 188 (306)
Q Consensus 176 ~A~~~gIp~~~~~ 188 (306)
+|+++|||++++.
T Consensus 82 ~~~~lgI~~~v~~ 94 (258)
T PRK10696 82 YLESLGVPYHIEE 94 (258)
T ss_pred HHHHhCCCEEEEE
Confidence 9999999998764
No 131
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.22 E-value=1.7 Score=33.57 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=28.0
Q ss_pred EEEE--E-cCCccchHHHHHHHHHhcCCeEeEeee
Q 021895 44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 44 ILTV--i-GpDRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.||+ . .++++|..++|-+.|+++|+||.-+.|
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 4566 3 478899999999999999999999987
No 132
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=89.93 E-value=2.8 Score=30.62 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.6
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.+|+++|. +++|+.+++-+.|+++|+|+....+
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~ 37 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD 37 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc
Confidence 46889996 8899999999999999999975554
No 133
>PRK11899 prephenate dehydratase; Provisional
Probab=89.61 E-value=3.2 Score=39.82 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=44.9
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
+.-+.+.-+|+||..+.|=+.++.+|+|++.+..--.. ..+.|...++++- ..+-+.++++|+++.+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg---~~~d~~v~~aL~~l~~~ 262 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG---HPEDRNVALALEELRFF 262 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC---CCCCHHHHHHHHHHHHh
Confidence 43333334899999999999999999999998875322 1233433444443 22346778888877543
No 134
>PRK08526 threonine dehydratase; Provisional
Probab=89.42 E-value=1.3 Score=44.25 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=36.8
Q ss_pred CCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 34 ~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
-.+..+...+.+.+.=|||||-.+.+++.+++.|.||+++++.
T Consensus 318 ~~l~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~ 360 (403)
T PRK08526 318 KGLIKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYD 360 (403)
T ss_pred HHHHhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEE
Confidence 3444566677888888999999999999999999999999884
No 135
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=89.29 E-value=0.68 Score=45.56 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=33.9
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCE
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~ 184 (306)
++.||+|++++-|... +.++++-.-.+++++|++.. ...+.++|+++|||+
T Consensus 2 ~~~rVgViG~~~G~~h---~~al~~~~~~~eLvaV~d~~----~erA~~~A~~~gi~~ 52 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFY---LAAFAAAPERFELAGILAQG----SERSRALAHRLGVPL 52 (343)
T ss_pred CCcEEEEEeHHHHHHH---HHHHHhCCCCcEEEEEEcCC----HHHHHHHHHHhCCCc
Confidence 4689999999655322 23332211137999998864 235788999999983
No 136
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=89.21 E-value=2.1 Score=32.38 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=28.0
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 021895 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 43 ~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
..+++.| ++.+|++++|-+.|+++|+|+.-+.+
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 3567754 67899999999999999999988865
No 137
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.99 E-value=4.1 Score=29.94 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=30.7
Q ss_pred cEEEEEEcC--CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 42 HGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 42 k~ILTViGp--DRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
+.+++++|. ..+|+.+++-+.|+++|+||.-++|-.
T Consensus 1 ~a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 1 RSIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred CcEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 357889987 468999999999999999999998843
No 138
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=2.3 Score=46.71 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=42.2
Q ss_pred CCcccC-CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 021895 29 GEPIES-SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV 83 (306)
Q Consensus 29 ~~~~~~-~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~ 83 (306)
|.|+-- |+.+...-.=|+|.+||+|.+-+.|+..+..+|.||.|.+-++.. +|+
T Consensus 670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~-dG~ 724 (867)
T COG2844 670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTR-DGY 724 (867)
T ss_pred cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEcc-CCc
Confidence 344433 444444556789999999999999999999999999999888754 453
No 139
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=88.62 E-value=3.3 Score=37.36 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=37.4
Q ss_pred eEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC---------ChhHHHHHHhCCCCEEEeCC
Q 021895 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP---------NSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 130 riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~---------~~~~~~~A~~~gIp~~~~~~ 189 (306)
|++++.||.--...++..+.+.| .+|.++++..+..+ -..+...|+..|||...+..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~ 66 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEI 66 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 68899998754444555555555 57777776532211 12567789999999988863
No 140
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.58 E-value=4.5 Score=28.66 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=30.2
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
.+++++|. +++|+.+++-+.|++.|+|+.-++|..
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 36788885 789999999999999999999998843
No 141
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=88.00 E-value=1.3 Score=45.47 Aligned_cols=90 Identities=14% Similarity=0.226 Sum_probs=57.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeec
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~ 123 (306)
-|-|+|.||.||+..|...|+.+++|+..+.. +. .|. +.+..++ .+.+.+..-++++.. ++
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~--~~-~~~----~~~~~~~--~~~~~~~~~~~~~~~----------~~ 62 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEI--DP-IGR----IYLNFAE--LEFESFSSLMAEIRR----------IA 62 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEE--cC-CCe----EEEeCCC--cChhhHHHHHHHHhc----------CC
Confidence 36789999999999999999999999999887 32 243 4444443 345555444443321 12
Q ss_pred CCCCCceEEEEEeCCc-chHHHHHHhhhcC
Q 021895 124 DIDPKYKVAVLASKQE-HCLVDFLYGWQEG 152 (306)
Q Consensus 124 ~~~~~~riavl~S~~g-~~L~~ll~~~~~g 152 (306)
....-+.|.++-+-+. .-|+++|+...+|
T Consensus 63 gv~~~~~~~~~~~e~e~~~L~aIL~sm~eG 92 (520)
T PRK10820 63 GVTDVRTVPFMPSEREHRALSALLEALPEP 92 (520)
T ss_pred CccchhhhccChHHHHHHHHHHHHHhCCCc
Confidence 2222334566655444 4577888877666
No 142
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=87.65 E-value=3.9 Score=33.27 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=58.3
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la 110 (306)
+|.|-+++...++||.+..|=+.....|..+..++++...++|.-..-+.|+.+ -+.+-|...|+++-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~~lL~~QLeKl~ 68 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSVDLLTSQLEKLY 68 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CChHHHHHHHHHHc
Confidence 578999999999999999999999999999999999876668888877777744 46889999888763
No 143
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.58 E-value=2.9 Score=35.09 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=40.2
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
-+.+.-+|+||-.+.|=+.++++|+|+..+...-... .+.|..-++++.. .++++..++.+.+
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~-----~~~~~~aL~~L~~ 106 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH-----RSDLLQLISSLRQ 106 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC-----HHHHHHHHHHHHH
Confidence 3344449999999999999999999999998853222 2223323444322 2346666665543
No 144
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.24 E-value=2.3 Score=29.02 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=25.6
Q ss_pred CCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 50 PDEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 50 pDRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
+|.+|+.+++.+.|+++|+||.-+.|..
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 7789999999999999999999998854
No 145
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=86.98 E-value=2 Score=28.83 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=30.2
Q ss_pred EEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 44 ILTViGpD---RpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
++++.|.+ .+|..+++-+.|+++|+||.-+.|..
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57888887 89999999999999999999998853
No 146
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=86.85 E-value=4.7 Score=37.60 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=48.4
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC--------C-hhHHHHHHhCCCCEEEeCCCC-CChH-HH
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE-NERE-EE 197 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~--------~-~~~~~~A~~~gIp~~~~~~k~-~~~e-~e 197 (306)
+|++++.||.--+..+++.+.+. .+|+++++..+... + .-+...|+..|||.+.+.... .+.| ++
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~ 76 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVED 76 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHH
Confidence 48999999976555566666554 37777776554321 1 245667899999987765332 1222 45
Q ss_pred HHHHhc--CCcEEEE
Q 021895 198 LLELVQ--NTDFLVL 210 (306)
Q Consensus 198 ~~~~v~--~~D~vVl 210 (306)
+.+.++ .+|-||.
T Consensus 77 l~~~l~~~gv~~vv~ 91 (222)
T TIGR00289 77 LAGQLGELDVEALCI 91 (222)
T ss_pred HHHHHHHcCCCEEEE
Confidence 656555 6777665
No 147
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=86.54 E-value=11 Score=41.26 Aligned_cols=104 Identities=3% Similarity=-0.052 Sum_probs=72.8
Q ss_pred CCcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 38 PTLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 38 p~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
-+..-.+|+++|. .++|+.+++-+.|++.|+|++...+. ...+.+.|+ .++..++++.+-++|-
T Consensus 387 v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s------~~sis~vV~-------~~d~~~av~~LH~~f~ 453 (810)
T PRK09466 387 LREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSED------GLSLVAVLR-------QGPTESLIQGLHQSLF 453 (810)
T ss_pred EeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeCC------CcEEEEEEe-------hHHHHHHHHHHHHHHh
Confidence 3456689999995 58999999999999999999777651 123334443 3566777777777773
Q ss_pred cccceeeecCCCCCceEEEEEeCC-cchHHHHHHhhhc-----CCCCeEEEEEee
Q 021895 115 AMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-----GKLPVEITCVIS 163 (306)
Q Consensus 115 l~~~~~rl~~~~~~~riavl~S~~-g~~L~~ll~~~~~-----g~l~~~I~~Vis 163 (306)
...++.+|++++-|. |..+..+|...++ -.+..+|++|..
T Consensus 454 ---------~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 454 ---------RAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred ---------CcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 223578999999988 5778788765432 224577787753
No 148
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=85.59 E-value=4.6 Score=41.53 Aligned_cols=131 Identities=14% Similarity=0.128 Sum_probs=72.2
Q ss_pred CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc---eeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCC-e
Q 021895 81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP-V 156 (306)
Q Consensus 81 ~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~---~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~-~ 156 (306)
.|.|..+++-- . +.+...|...|+++-++|..+.- ....+-..-+++|+|..|..|-.++|++.-++.- .| +
T Consensus 88 rG~YQi~~~~~-~--p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR-~P~~ 163 (440)
T COG1570 88 RGDYQIVAESM-E--PAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRR-FPSV 163 (440)
T ss_pred CCceEEEEecC-C--cCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhh-CCCC
Confidence 67777555432 2 23567777777777666653321 0111112235799999999999999999765433 34 4
Q ss_pred EEEEE--eeCCCCCCC--hhHHHHHHhCC-CCEEEeCCCCCC-------hHHHHHHHhcCCcEEEEeccCC
Q 021895 157 EITCV--ISNHDRGPN--SHVIRFLERHG-IPYHYLCAKENE-------REEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 157 ~I~~V--isn~~~~~~--~~~~~~A~~~g-Ip~~~~~~k~~~-------~e~e~~~~v~~~D~vVlA~ym~ 215 (306)
+|... ...-+..+. ...++.|.+.+ +.+..+.+.+.. +||.+.+.+.+..+=|+.+-+|
T Consensus 164 ~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGH 234 (440)
T COG1570 164 EVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGH 234 (440)
T ss_pred eEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeeccc
Confidence 44321 112211100 23455555555 666666654332 2456666666555556666666
No 149
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.52 E-value=3.9 Score=44.97 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=35.5
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 021895 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (306)
Q Consensus 39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id 78 (306)
..+.+++.|.|.||||+.|+|++.++++|.+|....-++-
T Consensus 788 ~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 788 SNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 3467999999999999999999999999999999776643
No 150
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=85.37 E-value=2 Score=42.88 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=37.4
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 32 ~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
++..+..+...+.+.|.=|||||-.+++.+.+...+.||.+.+..
T Consensus 315 ~~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 315 RERSLLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 344556677778899999999999999999777788899998875
No 151
>PRK06291 aspartate kinase; Provisional
Probab=84.80 E-value=20 Score=36.40 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=31.1
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 021895 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 42 k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
-.+|++.|. +.+|+.+++.+.|+++|+||.-++|.
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~ 358 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG 358 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 357899886 68999999999999999999999885
No 152
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=84.32 E-value=6.8 Score=36.59 Aligned_cols=78 Identities=23% Similarity=0.269 Sum_probs=47.7
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC--------C-hhHHHHHHhCCCCEEEeCCC-CCCh-HHH
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAK-ENER-EEE 197 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~--------~-~~~~~~A~~~gIp~~~~~~k-~~~~-e~e 197 (306)
+|++++.||.--+..+++.+.+. .+|+++++-.+... + .-+...|+..|||...+... ..+. +++
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 47888889876666677777655 36666655443321 1 23456789999998765422 1222 355
Q ss_pred HHHHhc--CCcEEEE
Q 021895 198 LLELVQ--NTDFLVL 210 (306)
Q Consensus 198 ~~~~v~--~~D~vVl 210 (306)
+.+.++ .+|.+|.
T Consensus 77 l~~~l~~~gv~~vv~ 91 (223)
T TIGR00290 77 LKGILHTLDVEAVVF 91 (223)
T ss_pred HHHHHHHcCCCEEEE
Confidence 666665 6776664
No 153
>PRK08639 threonine dehydratase; Validated
Probab=83.97 E-value=2.6 Score=42.11 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=36.9
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 32 ~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
++..+..+...+.+++.=|||||-.+++.+.+...+.||++++..
T Consensus 326 ~~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 326 KERSLIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 345556677778889999999999999999777777799999764
No 154
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=83.79 E-value=6.6 Score=39.31 Aligned_cols=68 Identities=6% Similarity=-0.047 Sum_probs=44.7
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
....++++ +|+||-.+.+=+.++.+|+|...+..--.. ..+.|...++++ + ...-+.++++|+++.+.
T Consensus 297 ktsl~~~~--~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e--g-~~~d~~~~~aL~~l~~~ 365 (386)
T PRK10622 297 KTTLLMAT--GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ--A-NLRSAEMQKALKELGEI 365 (386)
T ss_pred cEEEEEEc--CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe--C-CCCCHHHHHHHHHHHHh
Confidence 33344444 799999999999999999999998885221 123333334444 3 22345678888876543
No 155
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.17 E-value=4.1 Score=31.32 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=25.0
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeee
Q 021895 49 CPDEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 49 GpDRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.++.+|..++|-+.|+++|+|+.-+.|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 468899999999999999999999987
No 156
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=83.01 E-value=14 Score=27.51 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.4
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
.+|+++|. +++|+.+++-+.|+++|+|+.-++|.
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 46778664 78899999999999999999999885
No 157
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=82.50 E-value=4.1 Score=37.81 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=42.5
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCC---------hhHHHHHHhCCCCEEEeCCC--CCChHHH
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 197 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~---------~~~~~~A~~~gIp~~~~~~k--~~~~e~e 197 (306)
||++++-||.--+..++..+.+. .+|++.++-.+...+ .-+..-|+..|||......+ .....++
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~ 76 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED 76 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence 58999999875555567666554 567666653322111 23566789999999887743 2233467
Q ss_pred HHHHhc--CCcEEEE
Q 021895 198 LLELVQ--NTDFLVL 210 (306)
Q Consensus 198 ~~~~v~--~~D~vVl 210 (306)
+.+.++ ++|-+|.
T Consensus 77 l~~~l~~~~v~~vv~ 91 (218)
T PF01902_consen 77 LKEALKELKVEAVVF 91 (218)
T ss_dssp HHHHHCTC--SEEE-
T ss_pred HHHHHHHcCCCEEEE
Confidence 777776 6776654
No 158
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=82.19 E-value=13 Score=25.81 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=27.6
Q ss_pred EEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 021895 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 44 ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.+++.| ++.+|+.+++.+.|+++|+|+.-+++
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 467776 47789999999999999999988876
No 159
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=82.10 E-value=9.6 Score=33.20 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=38.8
Q ss_pred eEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCCC-----hhHHHHHHhCCCCEEEeC
Q 021895 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~-----~~~~~~A~~~gIp~~~~~ 188 (306)
||+|-+||.. .+|-.+|..++. ..+.++.+|..||.-.+. ..+.++|+++|||+++..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence 7899999863 566666666543 335689999988843333 368899999999999876
No 160
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.71 E-value=14 Score=25.65 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=27.9
Q ss_pred EEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 021895 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 44 ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.+++.| ++.+|+.+++.+.|+++|+|+.-+++
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 467877 46799999999999999999998876
No 161
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.51 E-value=6.5 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=25.2
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeee
Q 021895 49 CPDEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 49 GpDRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.++.+|..++|-+.|+++|+||.-+.|
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 478899999999999999999999987
No 162
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=81.24 E-value=33 Score=31.11 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=69.7
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc
Q 021895 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (306)
Q Consensus 40 ~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~ 118 (306)
.|++-+.+-=+|+||-.-.|=+=|.+.|+||+.+-..-+.. +++-...+.|+.+. .+..++-...+ ++.|..
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~----~~~~~~i~~~~-e~~Gi~-- 75 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR----EDKDAKIIRLL-EEEGII-- 75 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc----cHHHHHHHHHH-HhCCcE--
Confidence 46777788889999999999889999999999976653322 56677777777653 23333333333 555642
Q ss_pred eeeecCCCCCceEEEEEeCC--cchHHHHHHhhhc
Q 021895 119 VVRVPDIDPKYKVAVLASKQ--EHCLVDFLYGWQE 151 (306)
Q Consensus 119 ~~rl~~~~~~~riavl~S~~--g~~L~~ll~~~~~ 151 (306)
..++...+.+-+.-|+.=|. .+++++-++++..
T Consensus 76 I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ 110 (170)
T COG2061 76 IIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINS 110 (170)
T ss_pred EEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhc
Confidence 34554544555555554444 4899999988753
No 163
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=80.13 E-value=9.2 Score=36.89 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=43.0
Q ss_pred CceEEEEEeCC-cchH-HHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 128 ~~riavl~S~~-g~~L-~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
|.||+|+++|. |+.+ ..++. .+ ..++++|+... +++..+++|+++|+|+.+-. .+++++. .++
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d---~es~~la~A~~~Gi~~~~~~------~e~ll~~-~dI 65 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGID---PESDGLARARELGVKTSAEG------VDGLLAN-PDI 65 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCC---cccHHHHHHHHCCCCEEECC------HHHHhcC-CCC
Confidence 46999999987 4433 34432 22 37888887643 34456789999999987621 1222221 157
Q ss_pred cEEEEec
Q 021895 206 DFLVLAR 212 (306)
Q Consensus 206 D~vVlA~ 212 (306)
|+|+.+-
T Consensus 66 DaV~iaT 72 (285)
T TIGR03215 66 DIVFDAT 72 (285)
T ss_pred CEEEECC
Confidence 7777754
No 164
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=79.82 E-value=4.1 Score=35.48 Aligned_cols=118 Identities=17% Similarity=0.279 Sum_probs=67.8
Q ss_pred CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCC---CCChhHH----HHHHhCCCCEEEeCCCCCChHHHHHH
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR---GPNSHVI----RFLERHGIPYHYLCAKENEREEELLE 200 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~---~~~~~~~----~~A~~~gIp~~~~~~k~~~~e~e~~~ 200 (306)
..||++.+-+.+.....++..+. +++.++ ++..++. .++..++ +.++++|-.+.+.. .+.+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~--~~g~~~--~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e 69 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLA--KFGMEV--VLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEE 69 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHH--HTTSEE--EEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHH--HcCCEE--EEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHH
Confidence 46888888654555555555432 245663 3333322 1112344 44556676665542 2345
Q ss_pred HhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 201 LVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 201 ~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
.++++|+|..-+|...=. +|++- ...++++-.++.++++..+.+.|=.|| ||++||.
T Consensus 70 ~l~~aDvvy~~~~~s~~~--~e~~~------------~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~~ 126 (158)
T PF00185_consen 70 ALKGADVVYTDRWQSMGD--KERFK------------RLEKFKPYQVTEELMERAKPDAIFMHP--LPANRGE 126 (158)
T ss_dssp HHTT-SEEEEESSSCTTS--GGHHH------------HHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BTT
T ss_pred hcCCCCEEEEcCcccccc--hHHHH------------HHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCCc
Confidence 677999999999973111 33331 223344447999999998889999999 7999984
No 165
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=79.24 E-value=18 Score=35.09 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=46.2
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 37 ~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
.+.....++++ +|+||-..++=+.++.+|+|...+...-.. .-|.|+..++++ + ..+-..++++|+++.+
T Consensus 191 ~~~kTsl~f~~--~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e--g-~~~~~~v~~AL~el~~ 261 (279)
T COG0077 191 GPEKTSLIFSV--PNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE--G-HIDDPLVKEALEELKE 261 (279)
T ss_pred CCceEEEEEEc--CCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe--c-CcCcHhHHHHHHHHHh
Confidence 33455555555 599999999999999999999887664221 123344345554 3 2344788888887653
No 166
>PLN02551 aspartokinase
Probab=78.78 E-value=33 Score=35.85 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=50.3
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccce
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~ 119 (306)
..|++.|. +++|..++|-+.|+++|+||.-+.+. . ...-+.++-+.. ...+.+++.++++..+++- ..
T Consensus 367 ~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS----e--~sIs~~v~~~~~-~~~~~i~~~l~~l~~el~~-~~- 437 (521)
T PLN02551 367 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----E--VSISLTLDPSKL-WSRELIQQELDHLVEELEK-IA- 437 (521)
T ss_pred EEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc----C--CEEEEEEehhHh-hhhhhHHHHHHHHHHHhhc-CC-
Confidence 57888776 58999999999999999999999763 1 222233332211 1123355556555555541 11
Q ss_pred eeecCCCCCceEEEEEeC
Q 021895 120 VRVPDIDPKYKVAVLASK 137 (306)
Q Consensus 120 ~rl~~~~~~~riavl~S~ 137 (306)
++.-.+.--+|++.+..
T Consensus 438 -~V~v~~~vAiISvVG~~ 454 (521)
T PLN02551 438 -VVNLLQGRSIISLIGNV 454 (521)
T ss_pred -eEEEeCCEEEEEEEccC
Confidence 12222344567776663
No 167
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=78.61 E-value=21 Score=26.43 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=29.5
Q ss_pred EEEEEEcCC--ccchHHHHHHHHHhcCCeEeEeeee
Q 021895 43 GIHVFHCPD--EVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 43 ~ILTViGpD--RpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
.+++++|.. ++|+.+++-+.|++.|+|+.-++|.
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 578888863 5899999999999999999999884
No 168
>PRK06635 aspartate kinase; Reviewed
Probab=78.47 E-value=37 Score=33.35 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=29.4
Q ss_pred EEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 43 ~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
..|++.| .+++|+.++|.+.|+++|+||.-++|..
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~ 298 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV 298 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 3566665 5678999999999999999999998864
No 169
>PLN02342 ornithine carbamoyltransferase
Probab=78.03 E-value=23 Score=35.18 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=40.6
Q ss_pred HHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 199 ~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
.+.++++|+|..-+|.. -.|+|++-.. + +.+..-.++.+.++..+.++|=.|| ||+.+|-
T Consensus 254 ~eav~~aDVvy~~~W~s--~~~~e~~~~~-----~------~~~~~y~vt~ell~~ak~~aivMHp--LP~~rg~ 313 (348)
T PLN02342 254 AEAVKGADVVYTDVWAS--MGQKEEAEKR-----K------KAFQGFQVNEALMKLAGPQAYFMHC--LPAERGV 313 (348)
T ss_pred HHHhCCCCEEEECCccc--cccchhhHHH-----H------HhccCCccCHHHHhccCCCcEEeCC--CCcCCCc
Confidence 45566899999998854 2355553110 0 0111225889999888888999999 9999983
No 170
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=78.02 E-value=7.3 Score=27.77 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCccchHHHHHHHHHhcCCeEeEeee
Q 021895 50 PDEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 50 pDRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
++++|..++|-+.|+++|+|+.-+.+
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEec
Confidence 36789999999999999999999976
No 171
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=77.63 E-value=13 Score=32.11 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=38.9
Q ss_pred eEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-----ChhHHHHHHhCCCCEEEeC
Q 021895 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-----~~~~~~~A~~~gIp~~~~~ 188 (306)
||+|..||.. ..|..++..+... .+.++.+|..++.-.+ ...+.++|+.+|||++++.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKK 65 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6889999974 5566666554322 2346777777753211 1467889999999998876
No 172
>PRK11898 prephenate dehydratase; Provisional
Probab=77.07 E-value=18 Score=34.56 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=41.6
Q ss_pred cEEEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 42 k~ILTViGp-DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
+.-|.+.-+ |++|-.+.+=+.++++|+|++.+...-.+. .+.|...++++.. .+.+.+++.++.+.+
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHHHHHH
Confidence 444444444 469999999999999999999988752211 2223333444432 233467777766543
No 173
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=76.68 E-value=52 Score=32.31 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=30.7
Q ss_pred cEEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 42 k~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
-.++++.| ++++|+.+++.+.|+++|+||.-++|.
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 45788885 578999999999999999999998884
No 174
>PRK06635 aspartate kinase; Reviewed
Probab=76.60 E-value=14 Score=36.33 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=31.0
Q ss_pred ccEEEEEEc---CCccchHHHHHHHHHhcCCeEeEeee
Q 021895 41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 41 ~k~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.-.+++++| +|++|+.+++.+.|+++|+||.-+.+
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s 376 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST 376 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe
Confidence 446789988 69999999999999999999988765
No 175
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=76.07 E-value=17 Score=39.40 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=49.2
Q ss_pred ccEEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHH
Q 021895 41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD-PIKWPREQMDEDFFK 108 (306)
Q Consensus 41 ~k~ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~-~~~~~~eeLreaL~~ 108 (306)
....+||.. ||++|.+..+.++|+-+|.+|...+... +|.....+.|... +...+...|++++..
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 611 (693)
T PRK00227 545 EDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA---NGPWSAEFDVRANGPQDFDPQEFLQAYKS 611 (693)
T ss_pred cCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec---CCceEEEEEEecCCCCCCChHHHHHHHHH
Confidence 336788888 9999999999999999999999998854 5666544444421 234567888888875
No 176
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=75.74 E-value=7.8 Score=30.62 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=42.6
Q ss_pred ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCc
Q 021895 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (306)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D 206 (306)
.||++.+.|.. ..+.++.. -.-..++++|+... .....++++++|+| .+ . .-+++++.- ++|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~----~~~~~~v~~v~d~~----~~~~~~~~~~~~~~-~~-~-----~~~~ll~~~-~~D 64 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLR----SSPDFEVVAVCDPD----PERAEAFAEKYGIP-VY-T-----DLEELLADE-DVD 64 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHH----TTTTEEEEEEECSS----HHHHHHHHHHTTSE-EE-S-----SHHHHHHHT-TES
T ss_pred CEEEEECCcHHHHHHHHHHHh----cCCCcEEEEEEeCC----HHHHHHHHHHhccc-ch-h-----HHHHHHHhh-cCC
Confidence 48999999764 22333332 21237888887654 23466778999999 33 1 123333321 799
Q ss_pred EEEEeccCC
Q 021895 207 FLVLARYMQ 215 (306)
Q Consensus 207 ~vVlA~ym~ 215 (306)
+++++.--.
T Consensus 65 ~V~I~tp~~ 73 (120)
T PF01408_consen 65 AVIIATPPS 73 (120)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCc
Confidence 999986543
No 177
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=75.26 E-value=8.6 Score=29.47 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHHhcCCeEeEeee
Q 021895 52 EVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 52 RpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.+|..++|-+.|+++|+|+.-+.|
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEe
Confidence 489999999999999999999988
No 178
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=74.80 E-value=24 Score=32.89 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=44.1
Q ss_pred CCceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC
Q 021895 127 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 127 ~~~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
..-|+++|+-.+. .|- +++.....+.-+.+|..|=|.- .+..+..+|..|+||...+.
T Consensus 108 ~~~rlalFvkd~C~~C~-~~~~~l~a~~~~~Diylvgs~~---dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 108 GGGRLALFVKDDCVACD-ARVQRLLADNAPLDLYLVGSQG---DDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CCCeEEEEeCCCChHHH-HHHHHHhcCCCceeEEEecCCC---CHHHHHHHHHHcCCCHHHee
Confidence 4569999999665 454 4555666776789999888765 35689999999999987765
No 179
>PRK08841 aspartate kinase; Validated
Probab=74.66 E-value=15 Score=36.72 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=48.8
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc
Q 021895 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (306)
Q Consensus 39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl 115 (306)
...-.+++++|...+|+.+++-+.|+++|+||..+.+. + -.+.+.++ .++..++++.+-++|..
T Consensus 315 ~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s-----~-~~is~vv~-------~~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 315 SESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE-----P-QSSMLVLD-------PANVDRAANILHKTYVT 378 (392)
T ss_pred eCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC-----C-cEEEEEEe-------HHHHHHHHHHHHHHHcC
Confidence 34567999999999999999999999999999888761 1 22233332 46678888888888864
No 180
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=74.16 E-value=12 Score=37.96 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=43.7
Q ss_pred CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCCC-----hhHHHHHHhCCCCEEEeC
Q 021895 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~-----~~~~~~A~~~gIp~~~~~ 188 (306)
..||+|.+||.- .+|-.+|..++....+.++.++..||--.++ ..+.++|+++|||+++..
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 468999999974 5666677655422234789999999843232 356788999999998864
No 181
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=73.99 E-value=8.3 Score=33.49 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=32.1
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 021895 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 42 k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
=.++++.|| |-+||+|.|++-|+++|+-|--++.|.
T Consensus 63 W~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 63 WSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred eEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEecc
Confidence 357788887 889999999999999999999999984
No 182
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=73.62 E-value=24 Score=30.15 Aligned_cols=85 Identities=22% Similarity=0.313 Sum_probs=50.9
Q ss_pred eEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-----ChhHHHHHHhCCCCEEEe--CCC--C-CChH--
Q 021895 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYL--CAK--E-NERE-- 195 (306)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-----~~~~~~~A~~~gIp~~~~--~~k--~-~~~e-- 195 (306)
||+|..||.. ..+..++..+... .+.+|.+|..++.-.. ...+.++|+..|||++++ ... . ...+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 6899999875 4555555544322 1356777777754212 236788899999999987 211 1 1111
Q ss_pred ------HHHHHHhc--CCcEEEEeccCC
Q 021895 196 ------EELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 196 ------~e~~~~v~--~~D~vVlA~ym~ 215 (306)
..+.+..+ +.|.|++.-++.
T Consensus 80 ~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 80 AREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 12333333 789998876655
No 183
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=73.36 E-value=23 Score=34.58 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=71.1
Q ss_pred cchHHHHHHhh----hcCCCCeEEEEEeeCC--CCCCChhHHHHHHhCCC-CEEEeCCCCCChH----------HHHHHH
Q 021895 139 EHCLVDFLYGW----QEGKLPVEITCVISNH--DRGPNSHVIRFLERHGI-PYHYLCAKENERE----------EELLEL 201 (306)
Q Consensus 139 g~~L~~ll~~~----~~g~l~~~I~~Visn~--~~~~~~~~~~~A~~~gI-p~~~~~~k~~~~e----------~e~~~~ 201 (306)
.|..|+|+|.. ..|.+..--++.|... .+ .....+..+...|+ -+.+++.++-..+ ..+.+.
T Consensus 136 ~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~r-v~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea 214 (310)
T PRK13814 136 QHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSR-VANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPS 214 (310)
T ss_pred CCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCc-HHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHH
Confidence 48888887653 1365653233444432 11 11234667888998 6777664431111 234566
Q ss_pred hcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCcccccc-ccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 202 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN-MILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 202 v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
++++|+|..-+|.+ |++-+- .....++. -.+..+.++..+.++|=.|| ||++||-
T Consensus 215 ~~~aDvvy~~~~~~------er~~~~---------~~~~~~~~~y~v~~~~l~~a~~~~i~mHc--LP~~Rg~ 270 (310)
T PRK13814 215 LLNSDVIVTLRLQK------ERHDNS---------VDIDAFRGSFRLTPEKLYSAKPDAIVMHP--GPVNREV 270 (310)
T ss_pred hCCCCEEEECcccc------ccccch---------hHHHHhCCCcccCHHHHHhcCCCCEEECC--CCCCCCC
Confidence 77999999988843 333111 12233333 47899999888888999999 8999983
No 184
>PRK09181 aspartate kinase; Validated
Probab=72.54 E-value=78 Score=32.68 Aligned_cols=81 Identities=10% Similarity=-0.045 Sum_probs=51.3
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc
Q 021895 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (306)
Q Consensus 42 k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~ 118 (306)
-..|++.|. +.+|+.++|-+.|+++|+||.-+.+. . .. +-|-++.. .+.+++.++++.++++..
T Consensus 329 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss----~--~s--is~~v~~~---~~~~~~~~~~L~~~~~~~-- 395 (475)
T PRK09181 329 VFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATN----A--NT--ITHYLWGS---LKTLKRVIAELEKRYPNA-- 395 (475)
T ss_pred EEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEec----C--cE--EEEEEcCC---hHHHHHHHHHHHHhcCCc--
Confidence 356788665 68999999999999999999865542 1 12 22223321 344566677766667532
Q ss_pred eeeecCCCCCceEEEEEeCC
Q 021895 119 VVRVPDIDPKYKVAVLASKQ 138 (306)
Q Consensus 119 ~~rl~~~~~~~riavl~S~~ 138 (306)
.+.. +.--+|++.+.+-
T Consensus 396 --~i~~-~~~a~VsvVG~gm 412 (475)
T PRK09181 396 --EVTV-RKVAIVSAIGSNI 412 (475)
T ss_pred --eEEE-CCceEEEEeCCCC
Confidence 1222 4456788888764
No 185
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=71.38 E-value=14 Score=38.10 Aligned_cols=79 Identities=9% Similarity=0.099 Sum_probs=49.6
Q ss_pred CCceEEEEEe-CC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC------------
Q 021895 127 PKYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN------------ 192 (306)
Q Consensus 127 ~~~riavl~S-~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~------------ 192 (306)
.++||++|+| |+ |+.-.+++.+..+ ..+|+++..++. -.-..+-++++.-.+..+.....
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd---~f~vvaLaag~N---i~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENPD---KFKVVALAAGSN---VTLLADQVRKFKPKLVAVRNESLVDELKEALADLD 129 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCcc---ccEEEEEECCCC---HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCC
Confidence 3579999999 55 5666677765422 268888877652 12456667888866655542110
Q ss_pred ------ChHHHHHHHhc--CCcEEEEe
Q 021895 193 ------EREEELLELVQ--NTDFLVLA 211 (306)
Q Consensus 193 ------~~e~e~~~~v~--~~D~vVlA 211 (306)
.-++.+.+++. ++|+||.|
T Consensus 130 ~~~~vl~G~egl~~la~~~evDiVV~A 156 (454)
T PLN02696 130 DKPEIIPGEEGIVEVARHPEAVTVVTG 156 (454)
T ss_pred CCcEEEECHHHHHHHHcCCCCCEEEEe
Confidence 01356777776 67999876
No 186
>PRK07431 aspartate kinase; Provisional
Probab=71.03 E-value=50 Score=34.42 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=60.8
Q ss_pred EEEEE-cCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceee
Q 021895 44 IHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (306)
Q Consensus 44 ILTVi-GpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~r 121 (306)
.||+. -++++|+.+++.+.|+++|+||.-+.|..... .|.-. +.|.++. .+.+.+.+.++++.++++. . +
T Consensus 441 ~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~--isf~v~~--~~~~~~~~~l~~l~~~~~~-~---~ 512 (587)
T PRK07431 441 QLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRD--ISFTVPK--EDREAAQKVLRELAKQLPG-A---E 512 (587)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCcee--EEEEEcH--HHHHHHHHHHHHHHHhcCC-c---e
Confidence 44443 46789999999999999999999999964322 12222 2333433 2455566666666666652 1 1
Q ss_pred ecCCCCCceEEEEEeCCc---chHHHHHHhhhcC
Q 021895 122 VPDIDPKYKVAVLASKQE---HCLVDFLYGWQEG 152 (306)
Q Consensus 122 l~~~~~~~riavl~S~~g---~~L~~ll~~~~~g 152 (306)
+.-.+.--+|.+.+.+=. ..+..++.++.+-
T Consensus 513 i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~ 546 (587)
T PRK07431 513 VEDGPAIAKVSIVGAGMPGTPGVAARMFRALADA 546 (587)
T ss_pred EEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHC
Confidence 222344567888887642 2355566555443
No 187
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=71.02 E-value=31 Score=25.70 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=28.8
Q ss_pred EEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee
Q 021895 43 GIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 43 ~ILTViGpDR-pGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
..+||.+... +|..+++-+.|+++|+||.=+++.
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~ 36 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLINVS 36 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence 4577887654 899999999999999999999664
No 188
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=70.85 E-value=31 Score=34.14 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=33.0
Q ss_pred eEEEEE---------eCCcchHHHHHHhhhcCCCCeEEEEEee-CCCCCCChhH-HHHHHhCCCCEEEeCC
Q 021895 130 KVAVLA---------SKQEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHV-IRFLERHGIPYHYLCA 189 (306)
Q Consensus 130 riavl~---------S~~g~~L~~ll~~~~~g~l~~~I~~Vis-n~~~~~~~~~-~~~A~~~gIp~~~~~~ 189 (306)
|+.||. ++.|+-+.-|..+++.|+ .+..+++ +++....... .....++|||+.+++.
T Consensus 147 ~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~---~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D 214 (331)
T TIGR00512 147 PLRVLTHCNTGSLATAGYGTALGVIRSAHEKGR---LEHVYADETRPRLQGARLTAWELVQEGIPATLITD 214 (331)
T ss_pred CceEEeecCCccccccccchHHHHHHHHHHcCC---ceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcc
Confidence 667777 345677776667777774 2333333 3322112211 3456788999999873
No 189
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.82 E-value=31 Score=25.29 Aligned_cols=33 Identities=3% Similarity=-0.021 Sum_probs=26.5
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.+++++|. +.+|+.+++.+.|++.|+++.....
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~ 36 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAA 36 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcCCceEEEEeC
Confidence 36889996 7799999999999998877744433
No 190
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.79 E-value=1.5e+02 Score=33.99 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=79.2
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhc-------
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA------- 115 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~-l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl------- 115 (306)
-++-+--|. ||+..+=..+...||-..=....+.. .+..=...++|..++ ...++++.+.|..++..-+-
T Consensus 465 ~l~ghl~d~-~lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~d-~~~L~~i~~~l~~la~~~~~~~~~~~~ 542 (1042)
T PLN02819 465 SLSGHLFDK-FLINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADD-KEVLDQIIDSLTRLANPNEDYISPARE 542 (1042)
T ss_pred Eeeeecccc-hhhhhhhhhhhccCCceeeeeeccccCcccccceeeecccCc-HHHHHHHHHHHHHhccccccccccchh
Confidence 344444555 89998888777777644333332211 111222356665443 22345555555555531110
Q ss_pred --------------ccceeeecCCCCCceEEEEEeCC-cchHHHHHHhhhc-------CCCCeEEEEEeeCCCCCCChhH
Q 021895 116 --------------MRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-------GKLPVEITCVISNHDRGPNSHV 173 (306)
Q Consensus 116 --------------~~~~~rl~~~~~~~riavl~S~~-g~~L~~ll~~~~~-------g~l~~~I~~Visn~~~~~~~~~ 173 (306)
+...-......+++||+|+++|. |......|.+... ++-+..+..+|++.+ ...+
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~---~~~a 619 (1042)
T PLN02819 543 ANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY---LKDA 619 (1042)
T ss_pred hhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC---HHHH
Confidence 00000011233578999999987 4444444432110 111111223444442 1234
Q ss_pred HHHHHhC-CCCEEEeCCCCCChHHHHHHHhcCCcEEEEec
Q 021895 174 IRFLERH-GIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (306)
Q Consensus 174 ~~~A~~~-gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA~ 212 (306)
.++++.+ ++.+..++. ...+++.++++++|+||.+-
T Consensus 620 ~~la~~~~~~~~v~lDv---~D~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 620 KETVEGIENAEAVQLDV---SDSESLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHHhcCCCceEEeec---CCHHHHHHhhcCCCEEEECC
Confidence 5566666 655555431 23467888888899999874
No 191
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=70.01 E-value=16 Score=27.98 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=38.1
Q ss_pred eEEEEEeCCcchHHHHHHhhhcC-CCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEE
Q 021895 130 KVAVLASKQEHCLVDFLYGWQEG-KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (306)
Q Consensus 130 riavl~S~~g~~L~~ll~~~~~g-~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~v 208 (306)
||+|++.|. --.+|+.++..- .-+.+|..+.+.+ .....++++++++.+... ..++ .++++|+|
T Consensus 1 kI~iIG~G~--mg~al~~~l~~~g~~~~~v~~~~~r~----~~~~~~~~~~~~~~~~~~------~~~~---~~~~advv 65 (96)
T PF03807_consen 1 KIGIIGAGN--MGSALARGLLASGIKPHEVIIVSSRS----PEKAAELAKEYGVQATAD------DNEE---AAQEADVV 65 (96)
T ss_dssp EEEEESTSH--HHHHHHHHHHHTTS-GGEEEEEEESS----HHHHHHHHHHCTTEEESE------EHHH---HHHHTSEE
T ss_pred CEEEECCCH--HHHHHHHHHHHCCCCceeEEeeccCc----HHHHHHHHHhhccccccC------ChHH---hhccCCEE
Confidence 788886665 334455554433 2346776543333 345677888888544331 1223 34489999
Q ss_pred EEec
Q 021895 209 VLAR 212 (306)
Q Consensus 209 VlA~ 212 (306)
+++=
T Consensus 66 ilav 69 (96)
T PF03807_consen 66 ILAV 69 (96)
T ss_dssp EE-S
T ss_pred EEEE
Confidence 9983
No 192
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=69.97 E-value=14 Score=37.31 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=48.3
Q ss_pred CceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC----------C---
Q 021895 128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----------N--- 192 (306)
Q Consensus 128 ~~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~----------~--- 192 (306)
++||+|++|.. |+.-.+.+.+..+ ..+|+++..+.+ -....+.|++++-.+.++.... .
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~---~f~VvaLaa~~n---~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPD---RFRVVALSAGKN---VELLAEQAREFRPKYVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCcc---ccEEEEEEcCCC---HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCc
Confidence 36899999544 2322233332211 378999987652 2457888999997666654210 0
Q ss_pred ---ChHHHHHHHhc--CCcEEEEeccC
Q 021895 193 ---EREEELLELVQ--NTDFLVLARYM 214 (306)
Q Consensus 193 ---~~e~e~~~~v~--~~D~vVlA~ym 214 (306)
.-++.+.+++. ++|+||.|=-+
T Consensus 75 ~v~~G~~~~~~l~~~~~vD~Vv~Ai~G 101 (385)
T PRK05447 75 EVLAGEEGLCELAALPEADVVVAAIVG 101 (385)
T ss_pred eEEEChhHHHHHhcCCCCCEEEEeCcC
Confidence 01345666666 58999987444
No 193
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=69.92 E-value=14 Score=32.69 Aligned_cols=109 Identities=16% Similarity=0.245 Sum_probs=62.2
Q ss_pred EEEeCCcc-hH-HHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChH-HHHHHHhcCCcEEE
Q 021895 133 VLASKQEH-CL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE-EELLELVQNTDFLV 209 (306)
Q Consensus 133 vl~S~~g~-~L-~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e-~e~~~~v~~~D~vV 209 (306)
|--||+-| +- +.+.+++++-.||.+.++-++||++..++. .+..-...=++.. +++..+-. =.-..+++++|++|
T Consensus 3 VYLsGEIHtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G-~~iLG~e~~~fw~-D~k~a~iNaiRT~~li~~aDvvV 80 (144)
T TIGR03646 3 VYLAGEIHTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIG-EDILGKQPSNFWR-DDAAASINNIRTRKLIEKADVVI 80 (144)
T ss_pred EEEcCcccchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhh-HHHhCCCCccccc-cccccchhhHHHHHHHhhCCEEE
Confidence 45677764 33 345666777789999999999998743343 3332222222211 22222111 11223445899876
Q ss_pred EeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCC
Q 021895 210 LARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLL 267 (306)
Q Consensus 210 lA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLL 267 (306)
+ +|+- -|| -.|.-....+....+++.|-+||-=+
T Consensus 81 v-rFGe----------kYK-------------QWNaAfDAg~aaAlgKplI~lh~~~~ 114 (144)
T TIGR03646 81 A-LFGE----------KYK-------------QWNAAFDAGYAAALGKPLIILRPEEL 114 (144)
T ss_pred E-Eech----------HHH-------------HHHHHhhHHHHHHcCCCeEEecchhc
Confidence 5 7876 111 12334666777888999999997543
No 194
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.75 E-value=18 Score=28.73 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=33.3
Q ss_pred EEeeCCCCCCChhHHHHHHhCCCCEEEeCC--CCCChHHHHHHHhcCCcEEEEe
Q 021895 160 CVISNHDRGPNSHVIRFLERHGIPYHYLCA--KENEREEELLELVQNTDFLVLA 211 (306)
Q Consensus 160 ~Visn~~~~~~~~~~~~A~~~gIp~~~~~~--k~~~~e~e~~~~v~~~D~vVlA 211 (306)
+||..+++ ......+.++++|........ +....+..+-..++++|+||+.
T Consensus 3 liVGG~~~-~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 3 LIVGGRED-RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred EEEcCCcc-cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 45666544 345678889999987666622 2222334577788899999874
No 195
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=69.44 E-value=54 Score=30.97 Aligned_cols=80 Identities=10% Similarity=-0.039 Sum_probs=56.4
Q ss_pred cccEEEEEEcCCccc--hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895 40 LTHGIHVFHCPDEVG--IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (306)
Q Consensus 40 ~~k~ILTViGpDRpG--IVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~ 117 (306)
...|.+++.|.+..+ +.+.+-+.|.+++..+.+++.....+.+...+..++.... .+..++++-.+++...-++..
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~--~~~~~le~iv~~L~~~pgV~~ 217 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHA--DYRKTRELIISRIGDNDNITA 217 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecC--CchhhHHHHHHHHhCCCCeEE
Confidence 346888999988665 5789989999999999999885433456677788877654 244666666666666655544
Q ss_pred ceee
Q 021895 118 SVVR 121 (306)
Q Consensus 118 ~~~r 121 (306)
-.|+
T Consensus 218 v~W~ 221 (225)
T PRK15385 218 IHWS 221 (225)
T ss_pred EEEE
Confidence 3454
No 196
>PRK12483 threonine dehydratase; Reviewed
Probab=68.28 E-value=14 Score=38.62 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=35.8
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 32 ~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
+|-++-.+.....+.|.=|||||-.+.+++.|.+. ||++++..
T Consensus 335 ~~r~l~~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~ 377 (521)
T PRK12483 335 AERAELGEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYR 377 (521)
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEE
Confidence 34455566677788888899999999999999988 99998875
No 197
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=67.81 E-value=28 Score=34.12 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=42.7
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 39 ~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
..+-.+|+++|. +++|+.+.+.+.|++.|+||+-... . .... .+.++ .++..++++.+-++|.
T Consensus 334 ~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~---s-~~~i--s~vv~-------~~d~~~av~~Lh~~f~ 399 (401)
T TIGR00656 334 EEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGS---S-ETNI--SFLVD-------EKDAEKAVRKLHEVFE 399 (401)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEc---C-CCEE--EEEEe-------HHHHHHHHHHHHHHHc
Confidence 345578899996 7899999999999999999985442 1 2222 23332 3455666666665553
No 198
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=67.69 E-value=9.7 Score=39.31 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=47.3
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 32 ~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id-~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
+|-+.-.+.....+.|.=|||||-.+++.+.|++ .||++++..-. .....-++.+ ++++ ....+++.+.|++
T Consensus 315 ~~r~~~~~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgi--e~~~-~~~~~~l~~~L~~ 387 (499)
T TIGR01124 315 SERCELGEQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGV--QLSN-PQERQEILARLND 387 (499)
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEE--EeCC-HHHHHHHHHHHHH
Confidence 4555666777889999999999999999999997 69999887421 1122233333 3332 2245556665554
No 199
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=67.31 E-value=21 Score=38.38 Aligned_cols=77 Identities=9% Similarity=0.157 Sum_probs=51.2
Q ss_pred CCceEEEEEeCC-cc-hHHHHHHhhhcCCCCeEEEEEeeCCCCCCCh----hHHHHHHhCC--CCEEEeCCCCCChHHHH
Q 021895 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNS----HVIRFLERHG--IPYHYLCAKENEREEEL 198 (306)
Q Consensus 127 ~~~riavl~S~~-g~-~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~----~~~~~A~~~g--Ip~~~~~~k~~~~e~e~ 198 (306)
+..||+|+++|. ++ ++..|+. .| ..+|.+|+++.. .+|- ...+.|++.+ |++..+.. +..+.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~---sG--~~~I~~vd~D~v-~SNlnRIgEl~e~A~~~n~~v~v~~i~~---~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLID---SG--FPRFHAIVTDAE-EHALDRIHELAEIAEETDDALLVQEIDF---AEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHh---cC--CCcEEEEecccc-chhhhHHHHHHHHHHHhCCCCceEeccC---CcchhH
Confidence 667999999998 44 4444443 34 357878877664 2221 2367777754 77777653 234678
Q ss_pred HHHhcCCcEEEEec
Q 021895 199 LELVQNTDFLVLAR 212 (306)
Q Consensus 199 ~~~v~~~D~vVlA~ 212 (306)
.+.++..|+|+++.
T Consensus 199 ~ev~~~~DiVi~vs 212 (637)
T TIGR03693 199 HEAFEPADWVLYVS 212 (637)
T ss_pred HHhhcCCcEEEEEC
Confidence 88888999999875
No 200
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=66.81 E-value=60 Score=31.44 Aligned_cols=119 Identities=14% Similarity=0.192 Sum_probs=65.0
Q ss_pred eCCcchHHHHHHhh----hcCCCC-eEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChH---------------
Q 021895 136 SKQEHCLVDFLYGW----QEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE--------------- 195 (306)
Q Consensus 136 S~~g~~L~~ll~~~----~~g~l~-~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e--------------- 195 (306)
++..|.-|+|+|.. .-|.+. ..| +++..+.+ .-...+..+...|+.+.+++.+.-...
T Consensus 128 ~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i-~~vGd~~~-v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~ 205 (304)
T PRK00779 128 TDLSHPCQILADLLTIYEHRGSLKGLKV-AWVGDGNN-VANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASI 205 (304)
T ss_pred CCCCChHHHHHHHHHHHHHhCCcCCcEE-EEEeCCCc-cHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeE
Confidence 33457667766542 235554 333 34444322 112344556677777777664321111
Q ss_pred ---HHHHHHhcCCcEEEEeccCCCC--cCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCC
Q 021895 196 ---EELLELVQNTDFLVLARYMQPV--PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF 270 (306)
Q Consensus 196 ---~e~~~~v~~~D~vVlA~ym~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f 270 (306)
+.+.+.++++|+|..=+|...- ..+.++ + .-+.+-.++.+.++..+.++|=.|| ||.+
T Consensus 206 ~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~-~--------------~~~~~y~v~~~~l~~~~~~~ivmHp--lP~~ 268 (304)
T PRK00779 206 EVTHDPKEAVKGADVVYTDVWVSMGQEAEAEER-L--------------KAFAPYQVNEELMALAKPDAIFMHC--LPAH 268 (304)
T ss_pred EEEcCHHHHhCCCCEEEecCccccccchhHHHH-H--------------HHhcccCCCHHHHHhcCCCeEEecC--CCcc
Confidence 1234555689999998875400 011111 0 1112225888999888888999997 7888
Q ss_pred CCC
Q 021895 271 KGG 273 (306)
Q Consensus 271 ~Ga 273 (306)
||-
T Consensus 269 R~~ 271 (304)
T PRK00779 269 RGE 271 (304)
T ss_pred CCC
Confidence 884
No 201
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=66.81 E-value=21 Score=33.28 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=41.7
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc--C
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~ 204 (306)
++.||+|++.|... -...+..++...-.+++++|+... ...+.++|+++|++..+ . . +.+++. +
T Consensus 2 ~~irvgiiG~G~~~-~~~~~~~~~~~~~~~~~vav~d~~----~~~a~~~a~~~~~~~~~-~----~----~~~ll~~~~ 67 (342)
T COG0673 2 KMIRVGIIGAGGIA-GKAHLPALAALGGGLELVAVVDRD----PERAEAFAEEFGIAKAY-T----D----LEELLADPD 67 (342)
T ss_pred CeeEEEEEcccHHH-HHHhHHHHHhCCCceEEEEEecCC----HHHHHHHHHHcCCCccc-C----C----HHHHhcCCC
Confidence 46899999998421 111222222221005777777654 23578899999999222 1 1 223444 5
Q ss_pred CcEEEEec
Q 021895 205 TDFLVLAR 212 (306)
Q Consensus 205 ~D~vVlA~ 212 (306)
+|+|+.|-
T Consensus 68 iD~V~Iat 75 (342)
T COG0673 68 IDAVYIAT 75 (342)
T ss_pred CCEEEEcC
Confidence 79999884
No 202
>PRK09224 threonine dehydratase; Reviewed
Probab=66.74 E-value=16 Score=37.73 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=47.5
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 32 ~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id-~l~G~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
+|-..-.+.....+.|.=|||||-.+.+.+.|. +.||++++..-. ......++.++ +++...+.+++.+.|++
T Consensus 318 ~~r~~~~~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie--~~~~~~~~~~i~~~L~~ 391 (504)
T PRK09224 318 AERAELGEQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQ--LSRGQEERAEIIAQLRA 391 (504)
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEE--eCChhhHHHHHHHHHHH
Confidence 344445566677888888999999999999998 799999887421 11223333333 33221235677777765
No 203
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=66.60 E-value=16 Score=37.63 Aligned_cols=91 Identities=21% Similarity=0.330 Sum_probs=62.7
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeecC
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~~ 124 (306)
|.|.|.||.||--.+=..|..+|+|.-.+.. |.. | ++..+.|+ .+.+.+.+-..++- +++.
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEi--d~~-~----~IYln~p~--l~~~~fs~L~aei~----------~I~G 63 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPI-G----RIYLNFPE--LEFESFSSLMAEIR----------RIPG 63 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceee--cCC-C----eEEEeccc--cCHHHHHHHHHHHh----------cCCC
Confidence 6799999999999999999999999877766 322 2 45556664 35565555444432 1233
Q ss_pred CCCCceEEEEEeCCcc-hHHHHHHhhhcCCC
Q 021895 125 IDPKYKVAVLASKQEH-CLVDFLYGWQEGKL 154 (306)
Q Consensus 125 ~~~~~riavl~S~~g~-~L~~ll~~~~~g~l 154 (306)
-...++|-+|-|-..| .|.+||.+.-++-|
T Consensus 64 V~~vr~V~~mPseR~hl~L~aLL~al~~pVl 94 (511)
T COG3283 64 VTDVRTVPWMPSEREHLALSALLEALPEPVL 94 (511)
T ss_pred ccceeeecCCcchhHhHHHHHHHHhCCCceE
Confidence 3345678888887764 78899988766544
No 204
>PRK09034 aspartate kinase; Reviewed
Probab=66.57 E-value=66 Score=32.69 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=27.9
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEee
Q 021895 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAAD 74 (306)
Q Consensus 43 ~ILTViG---pDRpGIVAaVS~~LAe~G~NIlD~s 74 (306)
..||+.| ++++|+.++|-+.|+++|+||.-+.
T Consensus 309 ~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ 343 (454)
T PRK09034 309 TSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP 343 (454)
T ss_pred EEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence 4677776 6789999999999999999999874
No 205
>PLN02550 threonine dehydratase
Probab=66.43 E-value=10 Score=40.22 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=35.3
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 32 ~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
+|-....+...+.+.|.=|||||-.+++++.|++. ||++++..
T Consensus 407 ~~~~~~~~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~ 449 (591)
T PLN02550 407 TELADVGRQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYR 449 (591)
T ss_pred HHHHHhccCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEE
Confidence 34455556667888999999999999999999986 99998774
No 206
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=66.23 E-value=19 Score=31.06 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=47.2
Q ss_pred CceEEEEEeCCc--c-hHHHHHHhhhcCCCCeEE--EEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh
Q 021895 128 KYKVAVLASKQE--H-CLVDFLYGWQEGKLPVEI--TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (306)
Q Consensus 128 ~~riavl~S~~g--~-~L~~ll~~~~~g~l~~~I--~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v 202 (306)
++||.|+.+|+. + -.++++...... ..+| +++-+.+..+++..+++.++++||++.-...|.-+ ++ .+
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~~--~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~~k~i~-~~----~~ 74 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAPD--NVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHRSKQLT-EE----DF 74 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhccC--CeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCccCccCc-hh----hh
Confidence 579999999985 3 344555544332 2444 22211222225667899999999998742222111 11 12
Q ss_pred cCCcEEEEeccCC
Q 021895 203 QNTDFLVLARYMQ 215 (306)
Q Consensus 203 ~~~D~vVlA~ym~ 215 (306)
++.|+||...--.
T Consensus 75 ~~~DlIitmd~~~ 87 (139)
T COG0394 75 DEFDLIITMDESN 87 (139)
T ss_pred hhCCEEEEeChHH
Confidence 4799999877444
No 207
>PLN02317 arogenate dehydratase
Probab=65.70 E-value=44 Score=33.87 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=27.5
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
.++++ +|++|-.+++=+.++.+|+|+..+..-
T Consensus 286 ivfsl--~~~pG~L~k~L~~Fa~~~INLtkIESR 317 (382)
T PLN02317 286 IVFSL--EEGPGVLFKALAVFALRDINLTKIESR 317 (382)
T ss_pred EEEEc--CCCCchHHHHHHHHHHCCCCEEEEEee
Confidence 44444 899999999999999999999998764
No 208
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=65.67 E-value=5.8 Score=32.78 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=32.2
Q ss_pred ChhHHHHHHhCCCCEEEeC-CCCC-----C---------hHHHHHHHhcCCcEEEEeccC
Q 021895 170 NSHVIRFLERHGIPYHYLC-AKEN-----E---------REEELLELVQNTDFLVLARYM 214 (306)
Q Consensus 170 ~~~~~~~A~~~gIp~~~~~-~k~~-----~---------~e~e~~~~v~~~D~vVlA~ym 214 (306)
...+.++|++.|+|+.... .|.. . ......++++++|+|++.|..
T Consensus 28 ~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 28 AEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp HHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 3568899999999997765 3321 0 124566777899999999953
No 209
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=65.17 E-value=70 Score=32.55 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=72.2
Q ss_pred CceEEEEEeCCcchHHHHHHhhh-cCCCCeEEEEEeeCCCCC--------CChhHHHHHHhCCCCEEEeCCCCCChH--H
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRG--------PNSHVIRFLERHGIPYHYLCAKENERE--E 196 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~-~g~l~~~I~~Visn~~~~--------~~~~~~~~A~~~gIp~~~~~~k~~~~e--~ 196 (306)
.+|+.|+++++. -+.+....+ .+....++++++...+.. ....+.+.+++++|...+++.+..+.+ +
T Consensus 143 ~rrVLIvGaG~~--g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~ 220 (463)
T PRK10124 143 KRMVAVAGDLPA--GQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVK 220 (463)
T ss_pred CCcEEEEECCHH--HHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHH
Confidence 467888888763 334444443 345568999998754210 012345667788888777764332222 3
Q ss_pred HHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhc-CCCeeEeCCCCCCCCCCC
Q 021895 197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 197 e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~-~~~iINiHpsLLP~f~Ga 273 (306)
++++.++ ..++.++..... ..+...-++.+ +.++++++...+..+ .
T Consensus 221 ell~~~~~~~v~V~ivP~l~~-----------------------------~~~~~~~~~~~~~~p~~~~~~~~~~~~--~ 269 (463)
T PRK10124 221 KLVRQLADTTCSVLLIPDVFT-----------------------------FNILHSRLEEMNGVPVVPLYDTPLSGI--N 269 (463)
T ss_pred HHHHHHHHcCCeEEEecchhh-----------------------------ccccccchhhcCCeeEEEEeccccchH--H
Confidence 5555554 567777766654 01111112232 347899998866543 3
Q ss_pred cHHHHHHHHHhhcCce
Q 021895 274 KPAKQVGCFTFCLGNL 289 (306)
Q Consensus 274 ~p~~~A~~~~~~l~~~ 289 (306)
.-+++++.-.+.+.++
T Consensus 270 ~~~kr~~d~~~~~~~l 285 (463)
T PRK10124 270 RLLKRAEDIVLASLIL 285 (463)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577776655544443
No 210
>PRK14449 acylphosphatase; Provisional
Probab=65.13 E-value=28 Score=27.73 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..+..++.+. +|-+.+.|+...+++++..+++|...+.|.-|-..
T Consensus 17 GFR~fv~~~A~~lgl~G~V~N~~dG----~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~~~ 76 (90)
T PRK14449 17 GLRYSVYQKAVSLGITGYAENLYDG----SVEVVAEGDEENIKELINFIKTGLRWARVDNVEER 76 (90)
T ss_pred ChHHHHHHHHHHcCCEEEEEECCCC----eEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 4677788889999987764433332 69999999999999999999988644777666544
No 211
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=64.14 E-value=17 Score=32.10 Aligned_cols=98 Identities=21% Similarity=0.368 Sum_probs=54.7
Q ss_pred HHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChH-HHHHHHhcCCcEEEEeccCCCCcCchh
Q 021895 144 DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE-EELLELVQNTDFLVLARYMQPVPLQKE 222 (306)
Q Consensus 144 ~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e-~e~~~~v~~~D~vVlA~ym~~~~~~~~ 222 (306)
.+..+++.-.||.+.++-++||++..++ +.+..-..-=++.. +.+..+-. =.-..+++++|+||+ +|+-
T Consensus 13 ~I~~ga~~~~L~v~F~~PvtdH~~SD~~-G~~iLG~e~~~fw~-D~k~a~iN~iRT~~li~~aDvVVv-rFGe------- 82 (141)
T PF11071_consen 13 EIKEGAKAAGLPVEFTSPVTDHEASDDC-GVDILGEEPNKFWR-DHKGAKINAIRTRTLIEKADVVVV-RFGE------- 82 (141)
T ss_pred HHHHHHHHcCCCeEEecCCCCchhhhhh-hHHHhCCCCccccc-cchhhhhhHHHHHHHHhhCCEEEE-Eech-------
Confidence 4556666678999999999999873233 32332222112211 12221111 011233458998765 7876
Q ss_pred hhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCC
Q 021895 223 AYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLL 267 (306)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLL 267 (306)
-|| -.|.-.........+++.|-+||-=+
T Consensus 83 ---kYK-------------QWNaAfDAg~a~AlgKplI~lh~~~~ 111 (141)
T PF11071_consen 83 ---KYK-------------QWNAAFDAGYAAALGKPLITLHPEEL 111 (141)
T ss_pred ---HHH-------------HHHHHhhHHHHHHcCCCeEEecchhc
Confidence 111 02334666777888999999997543
No 212
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=63.72 E-value=68 Score=31.90 Aligned_cols=37 Identities=5% Similarity=0.135 Sum_probs=24.9
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhc-CCCCeEEEEEeeCC
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNH 165 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~-g~l~~~I~~Visn~ 165 (306)
..+|+.|+++++ ..+.++...++ +..+.++++++...
T Consensus 124 ~~~rvLIvGag~--~a~~l~~~L~~~~~~g~~vvG~idd~ 161 (445)
T TIGR03025 124 NLRRVLIVGTGE--AARELAAALSRNPDLGYRVVGFVDDR 161 (445)
T ss_pred CCCcEEEEECCH--HHHHHHHHHhhCccCCeEEEEEEeCC
Confidence 346788888876 45556665543 44568999999754
No 213
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=63.17 E-value=1.2e+02 Score=33.36 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=31.3
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 021895 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 41 ~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
+-.+|++.|. +++|+.+++-+.|+++|+||.-++|.
T Consensus 314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs 352 (819)
T PRK09436 314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS 352 (819)
T ss_pred CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC
Confidence 3457899886 67899999999999999999999885
No 214
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=62.59 E-value=11 Score=31.18 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=40.7
Q ss_pred ceEEEEEeCCcchHH--HHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCC---CCEEEe-CCCCCChHHHHHHHh
Q 021895 129 YKVAVLASKQEHCLV--DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG---IPYHYL-CAKENEREEELLELV 202 (306)
Q Consensus 129 ~riavl~S~~g~~L~--~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~g---Ip~~~~-~~k~~~~e~e~~~~v 202 (306)
+||.+.+||...++. +++.++++- ..+|.+|+|.. +.++....+ =++..- .........+-.+..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g~~v~vv~S~~-------A~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 71 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--GWEVRVVLSPS-------AERFVTPEGLTGEPVYTDWDTWDRGDPAEHIELS 71 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--TSEEEEEESHH-------HHHHSHHHGHCCSCEECTHCTCSTTTTTCHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--CCEEEEEECCc-------HHHHhhhhccccchhhhccccCCCCCCcCccccc
Confidence 589999999975544 566666554 57888888864 455544444 222221 000111111223334
Q ss_pred cCCcEEEEe
Q 021895 203 QNTDFLVLA 211 (306)
Q Consensus 203 ~~~D~vVlA 211 (306)
..+|++|+|
T Consensus 72 ~~~D~~vVa 80 (129)
T PF02441_consen 72 RWADAMVVA 80 (129)
T ss_dssp HTESEEEEE
T ss_pred ccCCEEEEc
Confidence 479999987
No 215
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.39 E-value=28 Score=33.31 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCCceEEEEEeCCc-chHHHHHHh-hhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEE
Q 021895 126 DPKYKVAVLASKQE-HCLVDFLYG-WQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (306)
Q Consensus 126 ~~~~riavl~S~~g-~~L~~ll~~-~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~ 186 (306)
.+|.||++.+||+- +.| +.. .+.|+ +.|....+.-. |.+.++.+|.+.|+|+..
T Consensus 2 ~sk~kvaiigsgni~tdl---m~k~lr~g~-~le~~~mvgid---p~sdglaraarlgv~tt~ 57 (310)
T COG4569 2 SSKRKVAIIGSGNIGTDL---MIKILRHGQ-HLEMAVMVGID---PQSDGLARAARLGVATTH 57 (310)
T ss_pred CCcceEEEEccCcccHHH---HHHHHhcCC-cccceeEEccC---CCccHHHHHHhcCCcchh
Confidence 36889999999984 433 333 33443 34554444433 567889999999998754
No 216
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=61.98 E-value=33 Score=32.08 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=39.3
Q ss_pred CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcE
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~ 207 (306)
++||+|++.|.- -..+...+.......++++|+... .....++++.+|.+.+. .-++++ .++|+
T Consensus 1 mmrIgIIG~G~i--G~~ia~~l~~~~~~~elv~v~d~~----~~~a~~~a~~~~~~~~~-------~~~ell---~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGCGAI--ASLITKAILSGRINAELYAFYDRN----LEKAENLASKTGAKACL-------SIDELV---EDVDL 64 (265)
T ss_pred CCEEEEECccHH--HHHHHHHHHcCCCCeEEEEEECCC----HHHHHHHHHhcCCeeEC-------CHHHHh---cCCCE
Confidence 368999998762 122333333332247787765432 23456667777765321 123333 58899
Q ss_pred EEEecc
Q 021895 208 LVLARY 213 (306)
Q Consensus 208 vVlA~y 213 (306)
|+.+..
T Consensus 65 Vvi~a~ 70 (265)
T PRK13304 65 VVECAS 70 (265)
T ss_pred EEEcCC
Confidence 998854
No 217
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=61.43 E-value=26 Score=34.99 Aligned_cols=58 Identities=19% Similarity=0.003 Sum_probs=38.5
Q ss_pred CCceEEEEEeCCc-c-hHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 021895 127 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 127 ~~~riavl~S~~g-~-~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
++.||+|..||.- + .+..+|.. . +.++.+|..+..+.....+.++|+..|||+++++.
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~--~---G~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd~ 63 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQE--Q---GYEIVGVTMRVWGDEPQDARELAARMGIEHYVADE 63 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHH--c---CCcEEEEEecCcchhHHHHHHHHHHhCCCEEEEeC
Confidence 4569999999974 3 33333432 3 36787777664221224678899999999998873
No 218
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=61.28 E-value=61 Score=30.35 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=43.8
Q ss_pred hHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC--hHHHHHHHhc--CCcEEEEeccC
Q 021895 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE--REEELLELVQ--NTDFLVLARYM 214 (306)
Q Consensus 141 ~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~--~e~e~~~~v~--~~D~vVlA~ym 214 (306)
|| +|.+.++.- ..+++.++.+. .....+..++.|.|+..++...+. ..+++.++++ ++|++|+=.|-
T Consensus 20 cl-~LA~~l~~~--g~~v~f~~~~~----~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~ 90 (279)
T TIGR03590 20 CL-TLARALHAQ--GAEVAFACKPL----PGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYG 90 (279)
T ss_pred HH-HHHHHHHHC--CCEEEEEeCCC----CHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCC
Confidence 44 455555322 36787776654 234567888999999888643221 1246777776 79999999993
No 219
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=60.96 E-value=60 Score=30.41 Aligned_cols=79 Identities=10% Similarity=0.123 Sum_probs=45.8
Q ss_pred ceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC---CC-h-------
Q 021895 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE---NE-R------- 194 (306)
Q Consensus 129 ~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~---~~-~------- 194 (306)
+||.+.+.|.| +...+|...++.- .+++.++..+. . +..+..+.+|++++.++... .. .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv~~~~-~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 74 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR--GWEVLYLGTAR-G----MEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPF 74 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEEECCC-c----hhhhccccCCCcEEEEeccCcCCCChHHHHHHHH
Confidence 68888876665 2233566665543 46776665433 1 12344456899999886321 11 0
Q ss_pred H-----HHHHHHhc--CCcEEEEeccC
Q 021895 195 E-----EELLELVQ--NTDFLVLARYM 214 (306)
Q Consensus 195 e-----~e~~~~v~--~~D~vVlA~ym 214 (306)
. ..+.++++ ++|+|+..++.
T Consensus 75 ~~~~~~~~~~~~ik~~~pDvv~~~~~~ 101 (357)
T PRK00726 75 KLLKGVLQARKILKRFKPDVVVGFGGY 101 (357)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 0 23444554 79999998754
No 220
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=60.59 E-value=94 Score=31.02 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=66.3
Q ss_pred CceEEEEEeCCcchHHHHHHhhh-cCCCCeEEEEEeeCCCCCCC-----------hhHHHHHHhCCCCEEEeCCCCCChH
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPN-----------SHVIRFLERHGIPYHYLCAKENERE 195 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~-~g~l~~~I~~Visn~~~~~~-----------~~~~~~A~~~gIp~~~~~~k~~~~e 195 (306)
++|+.++++++ ....+++..+ .+..+.++++++...+...+ ....+.++++++...+++......+
T Consensus 125 ~rrvlIiGag~--~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViIAip~~~~~ 202 (456)
T TIGR03022 125 GRPAVIIGAGQ--NAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIVAMPGTQAE 202 (456)
T ss_pred CceEEEEeCCH--HHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEEecCCccHH
Confidence 46788888875 3334444443 33456789999875421110 1234456667776555543222111
Q ss_pred --HHHHHHhc--CC-cEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHh--HHhhcCCCeeEeCCCCCC
Q 021895 196 --EELLELVQ--NT-DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGK--FLRSYGKDVINIHHGLLP 268 (306)
Q Consensus 196 --~e~~~~v~--~~-D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~--~l~~~~~~iINiHpsLLP 268 (306)
+++++.++ .. ++.++..... +.... +...-+.++++++..++.
T Consensus 203 ~~~~ll~~l~~~~v~~V~~vP~~~e------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (456)
T TIGR03022 203 DMARLVRKLGALHFRNVLIVPSLFG------------------------------LPNLWISPRFIGGVLGLRVRNNLLL 252 (456)
T ss_pred HHHHHHHHHHhCCCeEEEEeCcccc------------------------------cccccceeeeeCCeeEEEEeccccc
Confidence 34444444 34 5555555554 32222 122234568999886544
Q ss_pred CCCCCcHHHHHHHHHhhcCce
Q 021895 269 SFKGGKPAKQVGCFTFCLGNL 289 (306)
Q Consensus 269 ~f~Ga~p~~~A~~~~~~l~~~ 289 (306)
....-+|+++.-.+.+.++
T Consensus 253 --~~~~~~Kr~~D~~~~~~~l 271 (456)
T TIGR03022 253 --PSARLIKRTLDLVLSLLAL 271 (456)
T ss_pred --hHHHHHHHHHHHHHHHHHH
Confidence 2344567776555544433
No 221
>PRK07431 aspartate kinase; Provisional
Probab=60.55 E-value=1.1e+02 Score=31.89 Aligned_cols=100 Identities=15% Similarity=0.037 Sum_probs=56.9
Q ss_pred EEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeee
Q 021895 44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (306)
Q Consensus 44 ILTViG-pDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl 122 (306)
.+++.+ +|++|+.++|-+.|+++|+||.-+.|.... .+...+-+.+ +. .+.+...+.++++..+++. -.+
T Consensus 272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~-~~~~~isf~i--~~--~d~~~~~~~l~~l~~~~~~----~~i 342 (587)
T PRK07431 272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHE-GNSNDIAFTV--AE--NELKKAEAVAEAIAPALGG----AEV 342 (587)
T ss_pred EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCC-CCCccEEEEE--eH--HHHHHHHHHHHHHHHHcCC----CcE
Confidence 455544 688999999999999999999999886432 2333323333 32 1344444555554444431 112
Q ss_pred cCCCCCceEEEEEeCCc---chHHHHHHhhhcC
Q 021895 123 PDIDPKYKVAVLASKQE---HCLVDFLYGWQEG 152 (306)
Q Consensus 123 ~~~~~~~riavl~S~~g---~~L~~ll~~~~~g 152 (306)
.-.+.--+|.+.+++-. .-+..++.++.+.
T Consensus 343 ~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~ 375 (587)
T PRK07431 343 LVETNVAKLSISGAGMMGRPGIAAKMFDTLAEA 375 (587)
T ss_pred EEeCCeEEEEEECCCcccCccHHHHHHHHHHHC
Confidence 22334557777777531 2334455555443
No 222
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=60.35 E-value=64 Score=33.33 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=41.6
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
+.-|.+.-+|++|-.+.|=+.++++|+|+..+..--... .+.|..-++++ .. .+ +.+.+.++.+.+.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e--g~-~~-~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD--EA-SD-RKLEGVIEHLRQK 83 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe--cC-cc-HHHHHHHHHHHHh
Confidence 333444449999999999999999999999998753221 12232223333 21 12 5566666665443
No 223
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=59.62 E-value=31 Score=30.93 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=34.9
Q ss_pred CceEEEEEeCCc-chHHHHHHhhh-cCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 128 KYKVAVLASKQE-HCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 128 ~~riavl~S~~g-~~L~~ll~~~~-~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
++||+|+++|.- +.+ ..++. .|..+.+. .++.++. ......+++++.++... . . .+ +.++++
T Consensus 4 ~~kI~iIG~G~mg~al---a~~l~~~~~~~~~~-i~~~~~~--~~~~~~~~~~~~~~~~~--~----~-~~---~~~~~~ 67 (245)
T PRK07634 4 KHRILFIGAGRMAEAI---FSGLLKTSKEYIEE-IIVSNRS--NVEKLDQLQARYNVSTT--T----D-WK---QHVTSV 67 (245)
T ss_pred CCeEEEECcCHHHHHH---HHHHHhCCCCCcCe-EEEECCC--CHHHHHHHHHHcCcEEe--C----C-hH---HHHhcC
Confidence 468999998863 333 23222 23222331 2344441 12345666666776321 1 1 12 234589
Q ss_pred cEEEEe
Q 021895 206 DFLVLA 211 (306)
Q Consensus 206 D~vVlA 211 (306)
|+|+++
T Consensus 68 DiViia 73 (245)
T PRK07634 68 DTIVLA 73 (245)
T ss_pred CEEEEe
Confidence 999998
No 224
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=59.49 E-value=75 Score=29.36 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC-----Chh
Q 021895 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSH 172 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~-----~~~ 172 (306)
+.+++.+.....++++ + ..||+|.+||.- ..|-.+|..++.. .++.+|-.||.-.. ...
T Consensus 4 ~~~~~~v~~~i~~~~~------~-----~~~ilVavSGGkDS~~ll~~L~~l~~~---~~~~a~~Vd~~~~~~~~~~~~~ 69 (298)
T COG0037 4 EKLERKVKRAIREFNL------I-----EYKILVAVSGGKDSLALLHLLKELGRR---IEVEAVHVDHGLRGYSDQEAEL 69 (298)
T ss_pred HHHHHHHHHHHHhccc------c-----CCeEEEEeCCChHHHHHHHHHHHhccC---ceEEEEEecCCCCCccchHHHH
Confidence 4555666665555553 1 679999999974 5666666654432 68888888885432 236
Q ss_pred HHHHHHhCCCCEEEeC
Q 021895 173 VIRFLERHGIPYHYLC 188 (306)
Q Consensus 173 ~~~~A~~~gIp~~~~~ 188 (306)
+.++|+..|||..+..
T Consensus 70 ~~~~~~~~~~~~~v~~ 85 (298)
T COG0037 70 VEKLCEKLGIPLIVER 85 (298)
T ss_pred HHHHHHHhCCceEEEE
Confidence 7888999999988765
No 225
>PRK08210 aspartate kinase I; Reviewed
Probab=59.26 E-value=51 Score=32.52 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=42.7
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 39 ~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
...-.+|+++|. |++|+.+++.+.|+++|+||....+ . +... .+.++ .++..++++.+-++|.
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~--s--~~~i--s~vv~-------~~~~~~a~~~Lh~~f~ 401 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD--S--HTTI--WVLVK-------EEDMEKAVNALHDAFE 401 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec--C--CCEE--EEEEc-------HHHHHHHHHHHHHHhc
Confidence 345578899996 7899999999999999999975443 1 2222 23332 2445666666666664
No 226
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=59.24 E-value=1.9e+02 Score=28.96 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=31.1
Q ss_pred ccEEEEEEcCCc--cchHHHHHHHHHhcCCeEeEeeeec
Q 021895 41 THGIHVFHCPDE--VGIVAKLSECIASRGGNILAADVFV 77 (306)
Q Consensus 41 ~k~ILTViGpDR--pGIVAaVS~~LAe~G~NIlD~sQ~i 77 (306)
+-..+++.|.+- +|+.+++-+.|+++|+||.-+.|..
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~ 339 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSS 339 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 445788888665 5999999999999999999998743
No 227
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=59.07 E-value=1.3e+02 Score=29.54 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHhcCCcEEEEeccCCC---CcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcC-CCeeEeCCCCCCCCCCC
Q 021895 199 LELVQNTDFLVLARYMQP---VPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYG-KDVINIHHGLLPSFKGG 273 (306)
Q Consensus 199 ~~~v~~~D~vVlA~ym~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~-~~iINiHpsLLP~f~Ga 273 (306)
.+.++++|+|..=.|..- -.+++++. ..+.+-.++++.++..+ .++|=.|| ||+++|.
T Consensus 219 ~ea~~~aDvvy~~~w~~~~~~~~~~~~~~---------------~~~~~y~v~~e~l~~a~~~~~ivmHp--lP~~r~~ 280 (332)
T PRK04284 219 DEGVKGSDVIYTDVWVSMGEPDEVWEERI---------------KLLKPYQVNKEMMKKTGNPNAIFEHC--LPSFHDL 280 (332)
T ss_pred HHHhCCCCEEEECCcccCccchhhHHHHH---------------HhccCCcCCHHHHhhcCCCCcEEECC--CCCCCCc
Confidence 345568999999877430 00111110 11223368999998875 37888999 7988543
No 228
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=59.02 E-value=30 Score=33.19 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=41.7
Q ss_pred CceEEEEEeCCcchHHHHHHhhhcCC-CC-eEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQEGK-LP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~g~-l~-~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
++||+|++.|+ --++++.++.... ++ .+| +|+|+. +.....++.++|+.+ . . ..+ +.++++
T Consensus 1 ~~~IgfIG~G~--Mg~Ai~~gl~~~g~~~~~~I--~v~~~~---~e~~~~l~~~~g~~~-~-~-----~~~---~~~~~a 63 (266)
T COG0345 1 MMKIGFIGAGN--MGEAILSGLLKSGALPPEEI--IVTNRS---EEKRAALAAEYGVVT-T-T-----DNQ---EAVEEA 63 (266)
T ss_pred CceEEEEccCH--HHHHHHHHHHhcCCCCcceE--EEeCCC---HHHHHHHHHHcCCcc-c-C-----cHH---HHHhhC
Confidence 36899999886 4466777765443 55 444 567762 333446889999874 1 1 111 234478
Q ss_pred cEEEEe
Q 021895 206 DFLVLA 211 (306)
Q Consensus 206 D~vVlA 211 (306)
|+|+||
T Consensus 64 dvv~La 69 (266)
T COG0345 64 DVVFLA 69 (266)
T ss_pred CEEEEE
Confidence 888887
No 229
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=58.92 E-value=36 Score=29.86 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=46.4
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la 110 (306)
+-|+.|--+|+||=...|..+|-.+++|+.-+-.|+.+. ..- .+.+.++ +.++...+|++.+
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KA--lli~r~e----d~d~~~~aLed~g 130 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKA--LLIVRVE----DIDRAIKALEDAG 130 (142)
T ss_pred eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceE--EEEEEhh----HHHHHHHHHHHcC
Confidence 347788889999999999999999999999999987644 222 2333332 4677777777654
No 230
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=58.90 E-value=34 Score=26.85 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEee
Q 021895 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Vis 163 (306)
--+|.-...+|.++|+..+..+..|. +|-+.+.|+...+.++++.++.|.-++.|.-+-.
T Consensus 17 VgFR~~v~~~A~~~gl~G~V~N~~dg----~V~i~~~G~~~~l~~f~~~l~~g~p~a~V~~i~~ 76 (91)
T PF00708_consen 17 VGFRPFVKRIARKLGLTGWVRNLPDG----SVEIEAEGEEEQLEEFIKWLKKGPPPARVDEIEV 76 (91)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEE-TTS----EEEEEEEEEHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred CChhHHHHHHHHHhCCceEEEECCCC----EEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 34788888999999987764433332 7888888888889999999998865577766544
No 231
>PRK06291 aspartate kinase; Provisional
Probab=58.53 E-value=55 Score=33.29 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=45.5
Q ss_pred cccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 40 LTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 40 ~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
.+-.+|+++|. +++|+.+++-+.|++.|+||.-++|... +-.. -+.++ .++..++++.+-++|.
T Consensus 396 ~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsS--e~~I--s~vV~-------~~d~~~av~~Lh~~f~ 462 (465)
T PRK06291 396 KDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSS--EVNI--SFVVD-------EEDGERAVKVLHDEFI 462 (465)
T ss_pred CCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccc--cCeE--EEEEe-------HHHHHHHHHHHHHHhc
Confidence 44578999997 7999999999999999999999988532 1122 23332 3445666666666664
No 232
>PRK00907 hypothetical protein; Provisional
Probab=58.15 E-value=78 Score=25.89 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=46.3
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i-d~l~G~Ff-MrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
.|-+.|+|.+++++.++|-.++.+|.-+..+.+... ..-.|.|. ..+.+.+. +.++|.+-.++|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 477899999999999999999999877554433221 23467776 56666654 46777776666543
No 233
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=57.71 E-value=2.3e+02 Score=29.15 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=59.6
Q ss_pred cCCCCCcccCCCCC----------CcccEEEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 021895 25 LKFPGEPIESSVSP----------TLTHGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (306)
Q Consensus 25 ~~~~~~~~~~~~~p----------~~~k~ILTViGpD---RpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVd 91 (306)
-..||.-|.....+ ......|++.|+- ++|..++|-+.|+++|+|+.-+.|..... . +.+.
T Consensus 280 p~~~GTlI~~~~~~~~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~----~--i~~~ 353 (447)
T COG0527 280 PDAPGTLITAETESDEPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEV----S--ISFT 353 (447)
T ss_pred CCCCceEEecCCcCCCCceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCC----e--EEEE
Confidence 34477777766543 2455678888865 45899999999999999999998864422 1 4444
Q ss_pred eCCCCCCHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCC
Q 021895 92 FDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ 138 (306)
Q Consensus 92 v~~~~~~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~ 138 (306)
++.. +.+...+.|.+...+.. . ++.-...--+|++.+.|=
T Consensus 354 v~~~--~~~~a~~~l~~~~~~~~-~----~v~~~~~~a~vsiVG~gm 393 (447)
T COG0527 354 VPES--DAPRALRALLEEKLELL-A----EVEVEEGLALVSIVGAGM 393 (447)
T ss_pred Echh--hHHHHHHHHHHHHhhhc-c----eEEeeCCeeEEEEEcccc
Confidence 4432 33444444444332211 0 111223345777777764
No 234
>PRK10126 tyrosine phosphatase; Provisional
Probab=57.30 E-value=55 Score=27.86 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=44.7
Q ss_pred ceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 129 ~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
+||.|+..|+- .-.++++.... +.+.+.=+++.....++++..+++.++++||+..--..+.-+ + +.+++.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h~sr~lt--~---~~~~~~ 76 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQIS--R---RLCRNY 76 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCCccccCC--H---HHhccC
Confidence 58888888874 23445555433 222222233322222235778899999999986421111111 1 134489
Q ss_pred cEEEEeccCC
Q 021895 206 DFLVLARYMQ 215 (306)
Q Consensus 206 D~vVlA~ym~ 215 (306)
|+|+...-.+
T Consensus 77 DlIl~Md~~~ 86 (147)
T PRK10126 77 DLILTMEKRH 86 (147)
T ss_pred CEEEECCHHH
Confidence 9999875443
No 235
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=57.26 E-value=45 Score=25.73 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=38.7
Q ss_pred CceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCCC-CCCChhHHHHHHhCCCCEEEeCC
Q 021895 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 128 ~~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~~-~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
.+||+|-++..- +-+.+-|+...+.. | .++ +|+--. ++.+.-+.++|+++|+|+..++.
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~-~-~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH-P-DMV-LVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC-C-CEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 468888888775 33444455544432 2 233 555443 66677889999999999987763
No 236
>PRK14433 acylphosphatase; Provisional
Probab=57.25 E-value=29 Score=27.67 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..+.-++.| -.|-+.+.|+...+++++..+++|...+.|.-|-..
T Consensus 15 GFR~~v~~~A~~~~l~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~i~~~ 74 (87)
T PRK14433 15 GYRAFVQKKARELGLSGYAENLSD----GRVEVVAEGPKEALERLLHWLRRGPRHARVEAVDVQ 74 (87)
T ss_pred CchHHHHHHHHHcCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 357778888999998776433333 258888888888999999999877444777766654
No 237
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=57.01 E-value=16 Score=31.14 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=24.2
Q ss_pred CCCceEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCC
Q 021895 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 165 (306)
Q Consensus 126 ~~~~riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~ 165 (306)
..++||+|++.|. |.+|...|.+ .| ++|..|.+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~--ag---~~v~~v~srs 43 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALAR--AG---HEVVGVYSRS 43 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHH--TT---SEEEEESSCH
T ss_pred CCccEEEEECCCHHHHHHHHHHHH--CC---CeEEEEEeCC
Confidence 4578999999998 6888887764 34 6888877643
No 238
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=56.85 E-value=35 Score=31.22 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=41.7
Q ss_pred chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChH-HHHHHHhc-CCcEEEEec
Q 021895 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE-EELLELVQ-NTDFLVLAR 212 (306)
Q Consensus 140 ~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e-~e~~~~v~-~~D~vVlA~ 212 (306)
.-+.+.+.-+++-. -...|+||. ..+.|..+|++.|||+.+-..|-..+. .+.++.+. .++=+|+.|
T Consensus 49 pe~~~W~~e~k~~g---i~v~vvSNn---~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 49 PELRAWLAELKEAG---IKVVVVSNN---KESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred HHHHHHHHHHHhcC---CEEEEEeCC---CHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEc
Confidence 45677776655431 245577886 567899999999999998775543332 23334443 555555555
No 239
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=56.60 E-value=32 Score=30.91 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=39.8
Q ss_pred CCCceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc-
Q 021895 126 DPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (306)
Q Consensus 126 ~~~~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~- 203 (306)
..++||++++.|.- ..+...+. ....+.++++++...+. . .. ..-+|+|+.. -+++.++++
T Consensus 82 ~~~~rV~IIGaG~iG~~l~~~~~---~~~~g~~ivgv~D~d~~---~-~~--~~i~g~~v~~--------~~~l~~li~~ 144 (213)
T PRK05472 82 DRTWNVALVGAGNLGRALLNYNG---FEKRGFKIVAAFDVDPE---K-IG--TKIGGIPVYH--------IDELEEVVKE 144 (213)
T ss_pred CCCcEEEEECCCHHHHHHHHhhh---cccCCcEEEEEEECChh---h-cC--CEeCCeEEcC--------HHHHHHHHHH
Confidence 45779999999873 34433221 12335899999976421 1 00 0113455421 123445554
Q ss_pred -CCcEEEEeccCC
Q 021895 204 -NTDFLVLARYMQ 215 (306)
Q Consensus 204 -~~D~vVlA~ym~ 215 (306)
++|.++++-=..
T Consensus 145 ~~iD~ViIa~P~~ 157 (213)
T PRK05472 145 NDIEIGILTVPAE 157 (213)
T ss_pred CCCCEEEEeCCch
Confidence 688888874433
No 240
>PRK14447 acylphosphatase; Provisional
Probab=56.33 E-value=43 Score=27.06 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..|..++.| -.+|-+.+.|+...+++|++.+++|.-.+.|..|-..
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~d---G~~Vei~~qG~~~~l~~f~~~l~~gp~~a~V~~v~~~ 78 (95)
T PRK14447 18 FFRQSMKEVANRNGVRGWVRNRSD---GRTVEAVLEGPRDAVLKVIEWARVGPPGARVEDVEVK 78 (95)
T ss_pred cchHHHHHHHhhcCeEEEEEECCC---CCEEEEEEEeCHHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 357778888999998776543332 2247888888889999999998877555788776554
No 241
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=56.12 E-value=39 Score=31.88 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=39.9
Q ss_pred CCceEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
.++||++++.|. |..+ ...+..+.-.+++++|.... .....++++++|++..+- .-+++ +.++
T Consensus 5 ~~irIGIIG~G~IG~~~---a~~L~~~~~~~el~aV~dr~----~~~a~~~a~~~g~~~~~~------~~eel---l~~~ 68 (271)
T PRK13302 5 PELRVAIAGLGAIGKAI---AQALDRGLPGLTLSAVAVRD----PQRHADFIWGLRRPPPVV------PLDQL---ATHA 68 (271)
T ss_pred CeeEEEEECccHHHHHH---HHHHHhcCCCeEEEEEECCC----HHHHHHHHHhcCCCcccC------CHHHH---hcCC
Confidence 357999999987 3322 23333221137887775532 234567788888643221 12233 3478
Q ss_pred cEEEEecc
Q 021895 206 DFLVLARY 213 (306)
Q Consensus 206 D~vVlA~y 213 (306)
|+||.+--
T Consensus 69 D~Vvi~tp 76 (271)
T PRK13302 69 DIVVEAAP 76 (271)
T ss_pred CEEEECCC
Confidence 88888743
No 242
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.09 E-value=47 Score=29.06 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=46.0
Q ss_pred EeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCC------ChhHHHHHHhCCCCEEEeC-CCCCChH---HHHHHHhcC
Q 021895 135 ASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP------NSHVIRFLERHGIPYHYLC-AKENERE---EELLELVQN 204 (306)
Q Consensus 135 ~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~------~~~~~~~A~~~gIp~~~~~-~k~~~~e---~e~~~~v~~ 204 (306)
+|++- +-.++-.-...| ...||+|++++. +....++|+..|+.|.+++ ....-.| +.+.+.+..
T Consensus 12 VsgQi-~~~D~~~iaa~G-----FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~e 85 (130)
T COG3453 12 VSGQI-SPADIASIAALG-----FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDE 85 (130)
T ss_pred ecCCC-CHHHHHHHHHhc-----cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHH
Confidence 56664 334554433344 667999998752 3577889999999999998 3322223 334444545
Q ss_pred CcEEEEeccCC
Q 021895 205 TDFLVLARYMQ 215 (306)
Q Consensus 205 ~D~vVlA~ym~ 215 (306)
++-=||| |-|
T Consensus 86 aegPVla-yCr 95 (130)
T COG3453 86 AEGPVLA-YCR 95 (130)
T ss_pred hCCCEEe-eec
Confidence 6656665 544
No 243
>PRK09034 aspartate kinase; Reviewed
Probab=55.05 E-value=55 Score=33.27 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=44.8
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhh
Q 021895 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (306)
Q Consensus 39 ~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~el 113 (306)
..+-.+|+++|. +++|+.+++-+.|+++|+||.-++|... + ..+-|-++ .++..++++.+-++|
T Consensus 382 ~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S--e----~~Is~vV~-----~~d~~~av~~LH~~f 448 (454)
T PRK09034 382 EHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS--E----ISIMFGVK-----NEDAEKAVKAIYNAF 448 (454)
T ss_pred eCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC--c----ceEEEEEc-----HHHHHHHHHHHHHHH
Confidence 445678999885 7899999999999999999999988432 1 22333333 244555566655555
No 244
>PRK09181 aspartate kinase; Validated
Probab=54.75 E-value=61 Score=33.46 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=48.0
Q ss_pred cccEEEEEEcCC--ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 40 LTHGIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 40 ~~k~ILTViGpD--RpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
..-.+|+++|.. ++|+.+++-+.|++.|+||.-++|... .-.+.+.|+ .++.+++++.+-++|.
T Consensus 400 ~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~s----e~~Is~vV~-------~~d~~~Av~~lH~~f~ 465 (475)
T PRK09181 400 RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMR----QVNMQFVVD-------EDDYEKAICALHEALV 465 (475)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCC----cceEEEEEe-------HHHHHHHHHHHHHHHh
Confidence 456899999976 899999999999999999999999432 122233332 3567778888877774
No 245
>PLN02551 aspartokinase
Probab=54.68 E-value=61 Score=33.86 Aligned_cols=65 Identities=11% Similarity=0.000 Sum_probs=46.0
Q ss_pred CCcccEEEEEEcC--CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhh
Q 021895 38 PTLTHGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (306)
Q Consensus 38 p~~~k~ILTViGp--DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~el 113 (306)
-.....+|+++|. .++|+.+++-+.|+++|+||.-++|-.. .-.+-+.|+ .++..++++.+-++|
T Consensus 441 v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS----einIS~vV~-------~~d~~~Av~aLH~~F 507 (521)
T PLN02551 441 LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS----KVNISLIVN-------DDEAEQCVRALHSAF 507 (521)
T ss_pred EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC----CcEEEEEEe-------HHHHHHHHHHHHHHH
Confidence 3456688999986 6889999999999999999999998432 122233333 245566666666666
No 246
>PRK02047 hypothetical protein; Provisional
Probab=54.45 E-value=97 Score=24.99 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=47.2
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeE--eeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILA--ADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD--~sQ~id~l~G~Ff-MrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
.|-+.|+|++..+..++|-.++.++...+.+ ++.. ..-.|.|. ..+.+.+. +.+++.+-++++.+.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k-~Ss~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEER-PSSGGNYTGLTITVRAT----SREQLDNIYRALTGH 84 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEc-cCCCCeEEEEEEEEEEC----CHHHHHHHHHHHhhC
Confidence 4788999999999999999999998776544 2222 24467776 55566654 467777777766543
No 247
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=54.28 E-value=1e+02 Score=30.65 Aligned_cols=86 Identities=8% Similarity=0.131 Sum_probs=46.1
Q ss_pred CceEEEEEeCCcchHHHHHHhhh-cCCCCeEEEEEeeCCCCCC-----------ChhHHHHHHhCCCCEEEeCCCCCChH
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLCAKENERE 195 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~-~g~l~~~I~~Visn~~~~~-----------~~~~~~~A~~~gIp~~~~~~k~~~~e 195 (306)
++|+.|+++++ ..+.+....+ ++....++++++...+... .....+.++++++...+++......+
T Consensus 128 ~~rvLIiGag~--~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~ 205 (451)
T TIGR03023 128 LRRVLIVGAGE--LGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLAAED 205 (451)
T ss_pred CCcEEEEeCCH--HHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHH
Confidence 56888888776 4445555554 3345688999987542210 01244556666666655553222211
Q ss_pred --HHHHHHhc--CCcEEEEeccCC
Q 021895 196 --EELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 196 --~e~~~~v~--~~D~vVlA~ym~ 215 (306)
+++++.++ ..++.++-....
T Consensus 206 ~~~~ll~~~~~~gv~V~vvP~~~e 229 (451)
T TIGR03023 206 RILELLDALEDLTVDVRLVPDLFD 229 (451)
T ss_pred HHHHHHHHHHhcCCEEEEeCchhh
Confidence 34444443 456666655544
No 248
>PRK14422 acylphosphatase; Provisional
Probab=54.15 E-value=52 Score=26.49 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..|.-++.| -+|-+.+.|+...+++|+..+++|.-.+.|..|...
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~i~~~ 79 (93)
T PRK14422 20 GFRWWTRSRALELGLTGYAANLAD----GRVQVVAEGPRAACEKLLQLLRGDDTPGRVDKVVED 79 (93)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 467888888999998775433322 248889999988999999999987434777766553
No 249
>PRK13530 arsenate reductase; Provisional
Probab=54.01 E-value=37 Score=28.69 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=41.5
Q ss_pred CceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcC
Q 021895 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (306)
Q Consensus 128 ~~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~ 204 (306)
++||.|+.+++. .--++++.....+.+.+.=+++ . ..+.+..+++.++++||+..-...+.- +++ .+.+
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~-~--~~~~~~~a~~~l~e~Gi~~~~~~s~~l--~~~---~~~~ 74 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI-E--AHGVNPNAIKAMKEVGIDISNQTSDII--DND---ILNN 74 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC-C--CCCCCHHHHHHHHHcCCCcCCCccccC--Chh---Hhcc
Confidence 568888888874 2344555443323221111121 1 122567889999999998742211111 111 2347
Q ss_pred CcEEEEec
Q 021895 205 TDFLVLAR 212 (306)
Q Consensus 205 ~D~vVlA~ 212 (306)
.|+||...
T Consensus 75 ~D~ii~m~ 82 (133)
T PRK13530 75 ADLVVTLC 82 (133)
T ss_pred CCEEEEec
Confidence 89998764
No 250
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=53.94 E-value=1.4e+02 Score=29.39 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHHHhcCCcEEEEeccCCCCcCchh---hhhhhhhhhhhccCCCccccccccCCHhHHhhc-CCCeeEeCCCCCCCCCCC
Q 021895 198 LLELVQNTDFLVLARYMQPVPLQKE---AYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 198 ~~~~v~~~D~vVlA~ym~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~-~~~iINiHpsLLP~f~Ga 273 (306)
+.+.++++|+|..-.|.. ..-+.+ .++. .+..-.+.++.++.- ..+.|=.|| ||+++|.
T Consensus 219 ~~~a~~~aDvVyt~~w~s-m~~~~~~~~~~~~--------------~~~~y~v~~ell~~a~k~~aivmH~--lP~~~~~ 281 (334)
T PRK01713 219 IDKAVKGVDFVHTDVWVS-MGEPLETWGERIK--------------LLMPYQVTPELMKRTGNPKVKFMHC--LPAFHNS 281 (334)
T ss_pred HHHHhCCCCEEEEcceee-cccchhhHHHHHH--------------hccCCcCCHHHHhccCCCCCEEECC--CCCCCCc
Confidence 345566899999877733 111111 1111 112225888888875 567888998 7898653
No 251
>PRK00341 hypothetical protein; Provisional
Probab=53.14 E-value=94 Score=25.13 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=44.5
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee-ccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHHh
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF-VPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~-id~l~G~Ff-MrmeVdv~~~~~~~eeLreaL~~la~ 111 (306)
|-+.|+|.+.+++.++|-.++.++. ...+.... -..-.|.|. ..+.+.+. +.+++.+-+++|.+
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~----s~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT----DEDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 4468999999999999999998776 55443222 134468876 55666654 46777777776653
No 252
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=52.99 E-value=58 Score=32.62 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=31.7
Q ss_pred CcccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 021895 39 TLTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 39 ~~~k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
...-.+++++|. +++|+++++.+.|+++|+||.-+.+
T Consensus 375 ~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~ 414 (441)
T TIGR00657 375 EKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISS 414 (441)
T ss_pred cCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEe
Confidence 345568999875 7899999999999999999988875
No 253
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=52.91 E-value=66 Score=32.78 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=48.5
Q ss_pred ceEEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC------------C--
Q 021895 129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE------------N-- 192 (306)
Q Consensus 129 ~riavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~------------~-- 192 (306)
+||+||+|.. |++-.+++.+..+ ..+|+++.+++. -.-+.+.++++.-.+.++.... +
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~---~f~v~~Laa~~n---~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~ 75 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPD---HFQVVALSAGKN---VALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSR 75 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCcc---ccEEEEEEcCCC---HHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCC
Confidence 5899999876 3444455554322 378888887752 2356777888886666654210 0
Q ss_pred C----hHHHHHHHhc--CCcEEEEec
Q 021895 193 E----REEELLELVQ--NTDFLVLAR 212 (306)
Q Consensus 193 ~----~e~e~~~~v~--~~D~vVlA~ 212 (306)
. .++.+.+++. ++|++|.|=
T Consensus 76 ~~v~~G~~~l~~l~~~~~~D~vv~Ai 101 (389)
T TIGR00243 76 TEVLVGEEGICEMAALEDVDQVMNAI 101 (389)
T ss_pred cEEEECHHHHHHHHcCCCCCEEEEhh
Confidence 0 2355666666 579999873
No 254
>PRK14423 acylphosphatase; Provisional
Probab=52.85 E-value=49 Score=26.49 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..|..++.| -+|-+.+.|+..+++++++.+++|...+.|.-|...
T Consensus 19 GFR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~~ 78 (92)
T PRK14423 19 YYRASTRDTARELGVDGWVRNLDD----GRVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVEVE 78 (92)
T ss_pred eehHHHHHHHHHcCCEEEEEECCC----CeEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 357778888999998876543332 357788888888999999999877444777666543
No 255
>PRK11175 universal stress protein UspE; Provisional
Probab=52.71 E-value=40 Score=30.96 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=45.6
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHh
Q 021895 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGK 250 (306)
Q Consensus 173 ~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 250 (306)
..++++++|++.....-.....++++.+..+ ++|+||+....+ +++..++--=....
T Consensus 228 l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~---------------------~~~~~~llGS~a~~ 286 (305)
T PRK11175 228 MKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGR---------------------TGLSAAFLGNTAEH 286 (305)
T ss_pred HHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCcc---------------------CCCcceeecchHHH
Confidence 4556678888853221112234567777776 899999987777 33333333345677
Q ss_pred HHhhcCCCeeEeCC
Q 021895 251 FLRSYGKDVINIHH 264 (306)
Q Consensus 251 ~l~~~~~~iINiHp 264 (306)
+++.-+.+++=++|
T Consensus 287 v~~~~~~pVLvv~~ 300 (305)
T PRK11175 287 VIDHLNCDLLAIKP 300 (305)
T ss_pred HHhcCCCCEEEEcC
Confidence 78888888887765
No 256
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=52.41 E-value=2.6e+02 Score=28.04 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc---eeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCC-
Q 021895 80 KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP- 155 (306)
Q Consensus 80 l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~---~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~- 155 (306)
..|.|-+.+. ++.+. ...+|...++++-++|..+.. .-..+-..-++||||..|.+|-.++|++.-++.- -|
T Consensus 87 ~~g~~ql~v~-~i~~~--g~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~~~r-~p~ 162 (438)
T PRK00286 87 PRGDYQLIVE-EIEPA--GIGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVLRRR-FPL 162 (438)
T ss_pred CCCCEEEEEE-EeeeC--CccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhc-CCC
Confidence 3566665443 23222 236777777777666653221 0011112225799999999999999999877644 34
Q ss_pred eEEEEEee--CCCCCCC--hhHHHHHHhCCCCEEEeCCCCCCh-------HHHHHHHhcCCcEEEEeccCC
Q 021895 156 VEITCVIS--NHDRGPN--SHVIRFLERHGIPYHYLCAKENER-------EEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 156 ~~I~~Vis--n~~~~~~--~~~~~~A~~~gIp~~~~~~k~~~~-------e~e~~~~v~~~D~vVlA~ym~ 215 (306)
++|...=+ .-+..+. +.+++.+...+..+.++.+-+... |+++++.+.+.-+=|+.|-+|
T Consensus 163 ~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGH 233 (438)
T PRK00286 163 VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGH 233 (438)
T ss_pred CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccC
Confidence 55544322 2111111 234555555555677777654432 467888876544445555555
No 257
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=52.26 E-value=1.3e+02 Score=29.10 Aligned_cols=120 Identities=11% Similarity=0.187 Sum_probs=61.3
Q ss_pred EeCCcchHHHHHHhh----hcCCCC-eEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHH-------H----
Q 021895 135 ASKQEHCLVDFLYGW----QEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEE-------L---- 198 (306)
Q Consensus 135 ~S~~g~~L~~ll~~~----~~g~l~-~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e-------~---- 198 (306)
.++..|..|+|+|.. ..|.+. ..| +.|.+..+ .-...+..+.+.|+-+.+++.++-...++ +
T Consensus 122 ~~~~~HPtQaL~Dl~Ti~e~~g~l~g~kv-a~vGD~~~-v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~ 199 (302)
T PRK14805 122 LCDLYHPCQALADFLTLAEQFGDVSKVKL-AYVGDGNN-VTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKS 199 (302)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCcCCcEE-EEEcCCCc-cHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHc
Confidence 344457667666542 135453 233 33343211 11123455666777777766432111111 1
Q ss_pred ---------HHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCcccc-ccccCCHhHHhhcCCCeeEeCCCCCC
Q 021895 199 ---------LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY-FNMILSGKFLRSYGKDVINIHHGLLP 268 (306)
Q Consensus 199 ---------~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~~~l~~~~~~iINiHpsLLP 268 (306)
.+.++++|+|..-+|-+ .-.+.. .....++ .+-.++.+.++..+.. |=.|| ||
T Consensus 200 g~~~~~~~d~~a~~~aDvvy~~~w~~---~~~~~~-----------~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~--lP 262 (302)
T PRK14805 200 GGKLVLTSDIEAIEGHDAIYTDTWIS---MGDDTP-----------LAEIKAKFAPYQVNKALMEKAGAT-FVMHC--QP 262 (302)
T ss_pred CCEEEEEcCHHHHCCCCEEEeeceEe---CCCccc-----------cHHHHHhccCCcCCHHHHhcCCCC-eEECC--CC
Confidence 13456899999977754 000000 0011111 2235888988887766 77798 79
Q ss_pred CCCCC
Q 021895 269 SFKGG 273 (306)
Q Consensus 269 ~f~Ga 273 (306)
++||-
T Consensus 263 ~~Rg~ 267 (302)
T PRK14805 263 AHRGV 267 (302)
T ss_pred CCCCC
Confidence 99984
No 258
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=52.19 E-value=1e+02 Score=30.47 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=49.1
Q ss_pred eEEEEEeC--CcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC----------ChHHH
Q 021895 130 KVAVLASK--QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN----------EREEE 197 (306)
Q Consensus 130 riavl~S~--~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~----------~~e~e 197 (306)
||.|=+.. +-|-+..++..+++. +++|. |+.++. ..+.++++.+|+++..+...+. +|+.+
T Consensus 2 kIwiDi~~p~hvhfFk~~I~eL~~~--GheV~--it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~ 74 (335)
T PF04007_consen 2 KIWIDITHPAHVHFFKNIIRELEKR--GHEVL--ITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYK 74 (335)
T ss_pred eEEEECCCchHHHHHHHHHHHHHhC--CCEEE--EEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45554443 347788888877654 46764 344432 2478899999999999874322 23345
Q ss_pred HHHHhc--CCcEEEEec
Q 021895 198 LLELVQ--NTDFLVLAR 212 (306)
Q Consensus 198 ~~~~v~--~~D~vVlA~ 212 (306)
+++++. +||+++..+
T Consensus 75 l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 75 LLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHhhCCCEEEecC
Confidence 666665 899998543
No 259
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=52.14 E-value=2.6e+02 Score=28.04 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=91.6
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceee
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~r 121 (306)
.+-|.+.|..-.|- .-+..+|.+.||+++.++... +|.|. ..+.....++++++...+....+|+
T Consensus 171 ~~kVvvD~~~G~~~-~~~~~ll~~lG~~v~~~n~~~---dg~~~-----~~~~~~~~l~~l~~~v~~~~adlGi------ 235 (443)
T PRK10887 171 GLKIVVDCANGATY-HIAPNVFRELGAEVIAIGCEP---NGLNI-----NDECGATDPEALQAAVLAEKADLGI------ 235 (443)
T ss_pred CCEEEEECCCchHH-HHHHHHHHHhCCeEEEEeccC---CCCCC-----CCCCCCCCHHHHHHHHHhcCCCeee------
Confidence 34445555544432 123557888899999887743 35542 1111123567777777666566664
Q ss_pred ecCCCCCceEEEEEeCCcch-----HHHHHHh--hhcCCCCeEEEE-EeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC
Q 021895 122 VPDIDPKYKVAVLASKQEHC-----LVDFLYG--WQEGKLPVEITC-VISNHDRGPNSHVIRFLERHGIPYHYLCAKENE 193 (306)
Q Consensus 122 l~~~~~~~riavl~S~~g~~-----L~~ll~~--~~~g~l~~~I~~-Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~ 193 (306)
..|.|-. |+++. ..+|+. +.+|+.. ++++.++..|+. |.|+ ..+.+.|+++|++++....
T Consensus 236 a~D~DgD-Rl~~v-d~~G~~i~~d~l~~l~~~~ll~~~~~~~~vv~~v~ss------~~~~~~a~~~g~~v~~t~v---- 303 (443)
T PRK10887 236 AFDGDGD-RVIMV-DHLGNLVDGDQLLYIIARDRLRRGQLRGGVVGTLMSN------MGLELALKQLGIPFVRAKV---- 303 (443)
T ss_pred EECCCCc-eEEEE-CCCCcEeCHHHHHHHHHHHHHHhCCCCCcEEEEeccc------hHHHHHHHHcCCcEEEcCC----
Confidence 2344444 66444 565532 2223221 223222233332 2233 3577899999999988652
Q ss_pred hHHHHHHHhcCCcEEEEec-----cCCC-CcCchhhhhhh-hhhhhhccCC-Ccccccccc
Q 021895 194 REEELLELVQNTDFLVLAR-----YMQP-VPLQKEAYLGY-KLLESLSSKG-SLTSYFNMI 246 (306)
Q Consensus 194 ~e~e~~~~v~~~D~vVlA~-----ym~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~i 246 (306)
-...+.+.+.+.+ ++++| |+-| -..-+|+.+.. +++|-|+..| ++.+..+.+
T Consensus 304 G~~~i~~~m~~~~-~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~Ls~l~~~~ 363 (443)
T PRK10887 304 GDRYVLEKLQEKG-WRLGGENSGHILCLDKTTTGDGIVAALQVLAAMVRSGMSLADLCSGM 363 (443)
T ss_pred chHHHHHHHHhcC-cEEEEecccceeccCccccCcHHHHHHHHHHHHHHhCCCHHHHHhhc
Confidence 1234445554344 33333 2211 11235665555 6788887665 555554443
No 260
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=51.94 E-value=87 Score=32.67 Aligned_cols=63 Identities=16% Similarity=0.056 Sum_probs=39.9
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCe-EEEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNV-FYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l-~G~-FfMrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
|.+.-+|++|-.+.+=+.++++|+|+..+..--... .+. |..-+.++ . ..+.+++.|+.+.+.
T Consensus 34 LIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E--g---~~~~l~~aL~~Lk~~ 98 (464)
T TIGR01270 34 IIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE--L---FHYGLQEAMDLLKSG 98 (464)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE--c---CHHHHHHHHHHHHHh
Confidence 334448999999999999999999999988753221 122 22223333 2 224566666666543
No 261
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=51.56 E-value=2.5e+02 Score=27.69 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 198 ~~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
+.+.++++|+|..=+|-. +++.+-+ +.-... ...+..-.+..+.++..+ +.|=.|| ||+.||-
T Consensus 238 ~~ea~~~aDvvy~~~w~~------~~~~~~~--~~~~~~--~~~~~~y~v~~~ll~~a~-~~i~mHc--LP~~Rg~ 300 (335)
T PRK04523 238 IDSAYAGADVVYAKSWGA------LPFFGNW--EPEKPI--RDQYQHFIVDERKMALTN-NGVFSHC--LPLRRNV 300 (335)
T ss_pred HHHHhCCCCEEEeceeec------cccCCcc--cccHHH--HHhCcCCcCCHHHHhCCC-CCEEECC--CCCCCCC
Confidence 345566899999988853 1100000 000000 011122368888887765 6777898 7888884
No 262
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=51.50 E-value=1.2e+02 Score=23.82 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCC
Q 021895 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 173 ~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~ 215 (306)
..+.+++++++++... +....+.+.+..+ ++|+||+....+
T Consensus 54 ~~~~~~~~~~~~~~~~--~~~~~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 54 ALRLAEELGAEVVTLP--GDDVAEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHcCCEEEEEe--CCcHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 4566788888876653 2223567877776 899999977665
No 263
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=51.47 E-value=50 Score=27.32 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=41.1
Q ss_pred ceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 129 ~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
+||.|+..++. .--++++.....+.+.+.=+++-. ...+..+++.++++||+..-...+.- ++. .+++.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~---~~~~p~a~~~l~e~Gid~~~~~s~~l--~~~---~~~~~ 72 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV---SRVHPTAIEVMSEIGIDISGQTSKPL--ENF---HPEDY 72 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC---CCCCHHHHHHHHHhCCCcccCccccC--Chh---HhcCC
Confidence 46777777764 234556655433322122122221 22566789999999999743222211 111 23489
Q ss_pred cEEEEec
Q 021895 206 DFLVLAR 212 (306)
Q Consensus 206 D~vVlA~ 212 (306)
|+||...
T Consensus 73 D~iitm~ 79 (126)
T TIGR02689 73 DVVISLC 79 (126)
T ss_pred CEEEEeC
Confidence 9999863
No 264
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=51.00 E-value=1.3e+02 Score=29.70 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=37.7
Q ss_pred HHHhcCCcEEEEeccC-CCCcCchhhhhhhhhhhhhccCCCcccccc-ccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 199 LELVQNTDFLVLARYM-QPVPLQKEAYLGYKLLESLSSKGSLTSYFN-MILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 199 ~~~v~~~D~vVlA~ym-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
.+.+.++|+|..-+|. . ...|+. . .+. ...++. -.++.+.++..+.++|=.|| ||.+||-
T Consensus 217 ~eav~~aDvvy~~~w~~~---~~~~~~--~--~~r------~~~~~~~y~v~~ell~~a~~~~ivmHp--LP~~Rg~ 278 (338)
T PRK02255 217 DEAVKDADFVYTDVWYGL---YDAELS--E--EER------MAIFYPKYQVTPELMAKAGPHAKFMHC--LPATRGE 278 (338)
T ss_pred HHHhCCCCEEEEcccHhh---ccchhh--H--HHH------HHhhCCCceECHHHHhccCCCCEEeCC--CCCcCCc
Confidence 3556689999998864 1 111111 0 000 112222 36889999998888999999 7999883
No 265
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=50.81 E-value=93 Score=25.15 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=35.6
Q ss_pred CceEEEEEeCCcc--hHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC
Q 021895 128 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190 (306)
Q Consensus 128 ~~riavl~S~~g~--~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k 190 (306)
+.-+++++|.+|. .+.+.++.+++- .+.+.++.++. +..+.|.++|+++..++..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI~IT~~~------~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER--GAKIVAITSGG------KLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEeCCc------hHHHHHHHcCCcEEECCCC
Confidence 3458999999884 333444444433 35665554432 3678899999999988743
No 266
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=50.41 E-value=70 Score=30.60 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=35.8
Q ss_pred EEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEE
Q 021895 132 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 210 (306)
Q Consensus 132 avl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVl 210 (306)
+||.-+..+.++.+|...+.+ ..|. |.-+++........+...++|||+.+++. ..+...+.++|.|++
T Consensus 89 vILT~s~S~~v~~~l~~~~~~---~~V~-v~ESrP~~eG~~~a~~L~~~GI~vtli~D------sa~~~~m~~vd~Vlv 157 (253)
T PRK06372 89 VIGTISSSQVLKAFISSSEKI---KSVY-ILESRPMLEGIDMAKLLVKSGIDVVLLTD------ASMCEAVLNVDAVIV 157 (253)
T ss_pred EEEEeCCcHHHHHHHHhcCCC---CEEE-EecCCCchHHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 344444677888888653221 2333 33334322223334445668999999862 223333445555555
No 267
>PRK14429 acylphosphatase; Provisional
Probab=50.37 E-value=65 Score=25.65 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..+..++ ..-+|-+.+.|+...+++++..+++|.-.+.|.-+-..
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~~ 75 (90)
T PRK14429 16 GCRRATLTKARALGVTGYVTNC----EDGSVEILAQGSDPAVDNLIAWCEVGVPCTEVLRVTVE 75 (90)
T ss_pred eeHHHHHHHHHHhCCEEEEEEC----CCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 3577788889999987754322 22368889999888999999999887333777766554
No 268
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=50.29 E-value=2.3e+02 Score=28.08 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhc-CCCeeEeCCCCCCCC
Q 021895 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSF 270 (306)
Q Consensus 199 ~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~-~~~iINiHpsLLP~f 270 (306)
.+.++++|+|..-+|.. ...+.|++..++ ..+..--++.+.++.- ..++|=.|| ||++
T Consensus 220 ~~a~~~aDvvyt~~w~s-m~~~~~~~~~~~-----------~~~~~y~v~~ell~~a~~~~~i~mHc--LP~~ 278 (334)
T PRK12562 220 AAGVKGADFIYTDVWVS-MGEPKEKWAERI-----------ALLRGYQVNSKMMALTGNPQVKFLHC--LPAF 278 (334)
T ss_pred HHHhCCCCEEEEcCccc-cccchhhHHHHH-----------HhccCCcCCHHHHHhhcCCCCEEECC--CCCC
Confidence 35566899999999833 113444432211 1112225888988874 567888998 7875
No 269
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=50.19 E-value=85 Score=28.70 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=39.7
Q ss_pred EEEeCCc-chHHHHHHhhhcCCCCeEEEEEee-CCCC--------CCChhHHHHHHhCCCCEEEeCCCC-CC-hHHHHHH
Q 021895 133 VLASKQE-HCLVDFLYGWQEGKLPVEITCVIS-NHDR--------GPNSHVIRFLERHGIPYHYLCAKE-NE-REEELLE 200 (306)
Q Consensus 133 vl~S~~g-~~L~~ll~~~~~g~l~~~I~~Vis-n~~~--------~~~~~~~~~A~~~gIp~~~~~~k~-~~-~e~e~~~ 200 (306)
++.||.- +++ ++..+.+.| .+|+++++ +..+ ..-..+...|+..|||...++... +. .++.+.+
T Consensus 2 vl~SGGkDS~~-al~~a~~~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~ 77 (218)
T TIGR03679 2 ALYSGGKDSNY-ALYKALEEG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKG 77 (218)
T ss_pred eeecCcHHHHH-HHHHHHHcC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHH
Confidence 5667754 444 444455555 56754443 2110 012356788999999998887432 11 2233433
Q ss_pred Hhc-----CCcEEEE
Q 021895 201 LVQ-----NTDFLVL 210 (306)
Q Consensus 201 ~v~-----~~D~vVl 210 (306)
.+. .+|.||.
T Consensus 78 ~l~~~~~~g~~~vv~ 92 (218)
T TIGR03679 78 ALKELKREGVEGIVT 92 (218)
T ss_pred HHHHHHHcCCCEEEE
Confidence 332 5776665
No 270
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=50.17 E-value=97 Score=27.86 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=43.9
Q ss_pred eEEEEEeCCc----chHHHHHHhhhcCCCCeEEEEEeeCCCCC-CChhHHHHHHhCCCCEEEeCCCCCChH--HHHHHHh
Q 021895 130 KVAVLASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENERE--EELLELV 202 (306)
Q Consensus 130 riavl~S~~g----~~L~~ll~~~~~g~l~~~I~~Visn~~~~-~~~~~~~~A~~~gIp~~~~~~k~~~~e--~e~~~~v 202 (306)
||.+|+-..| +++..|-.+.+.- +..|..|-...-|. .-.....+|+..|+|++.........+ .+.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 5666666655 5666665554433 45666555554331 112457789999999888653221111 1222333
Q ss_pred c--CCcEEEEeccCC
Q 021895 203 Q--NTDFLVLARYMQ 215 (306)
Q Consensus 203 ~--~~D~vVlA~ym~ 215 (306)
. +.|+|+.=--++
T Consensus 80 ~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHTTSSEEEEEE-SS
T ss_pred hhcCCCEEEEecCCc
Confidence 2 578888644444
No 271
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=49.86 E-value=26 Score=28.08 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=49.6
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHH
Q 021895 173 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFL 252 (306)
Q Consensus 173 ~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l 252 (306)
+.+.++++|+|+.+-... -.++.+...+.|+|+++-=.+ -.-+++-
T Consensus 19 i~~~~~~~~~~~~v~~~~----~~~~~~~~~~~Diil~~Pqv~------------------------------~~~~~i~ 64 (96)
T cd05564 19 MKKAAEKRGIDAEIEAVP----ESELEEYIDDADVVLLGPQVR------------------------------YMLDEVK 64 (96)
T ss_pred HHHHHHHCCCceEEEEec----HHHHHHhcCCCCEEEEChhHH------------------------------HHHHHHH
Confidence 578899999998774422 223434445899999985444 2222332
Q ss_pred ---hhcCCCeeEeCCCCCCCCCCCcHHHHHH
Q 021895 253 ---RSYGKDVINIHHGLLPSFKGGKPAKQVG 280 (306)
Q Consensus 253 ---~~~~~~iINiHpsLLP~f~Ga~p~~~A~ 280 (306)
..+..++..|=+.-.....|.+-+++|.
T Consensus 65 ~~~~~~~~pv~~I~~~~Y~~~dg~~il~~~~ 95 (96)
T cd05564 65 KKAAEYGIPVAVIDMMDYGMMNGEKVLKQAL 95 (96)
T ss_pred HHhccCCCcEEEcChHhcccCCHHHHHHHHh
Confidence 2455688888888888888888887764
No 272
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.64 E-value=53 Score=32.76 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=43.6
Q ss_pred CCceEEEEEeCC-cchHHHHHHhhhcCC----CCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC-CCC--CC-hHHH
Q 021895 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGK----LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE--NE-REEE 197 (306)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~g~----l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~-~k~--~~-~e~e 197 (306)
+++||+|+++|. |+.|..+|.. .|. ...+|....-+.+. ......+.-.+.+....|++ -+- +- ...+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~--n~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE--NTQRNYIFHNEVRMWVLEEIV-EGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCcccCCCCeEEEEEecccc-cchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 467999999997 6888777754 221 12466655433311 01122333333333333444 111 10 0123
Q ss_pred HHHHhcCCcEEEEec
Q 021895 198 LLELVQNTDFLVLAR 212 (306)
Q Consensus 198 ~~~~v~~~D~vVlA~ 212 (306)
+.+.++++|+||+|=
T Consensus 87 l~eav~~aDiIvlAV 101 (365)
T PTZ00345 87 LKEAVEDADLLIFVI 101 (365)
T ss_pred HHHHHhcCCEEEEEc
Confidence 445667999999984
No 273
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.42 E-value=95 Score=22.22 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=24.9
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
.+++++|. +++|+.+++.+.|++ .||.=++|.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~ 36 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALED--INVRMICYG 36 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEe
Confidence 47889997 789999999999976 555555553
No 274
>PRK14436 acylphosphatase; Provisional
Probab=49.15 E-value=70 Score=25.66 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..+..++. .-+|-+.+.|+...+.++++.+++|.-.+.|.-|-..
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLP----DGSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVK 77 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECC----CCcEEEEEEcCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 46778888899999877644332 2368888888888999999988877444777766654
No 275
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=49.09 E-value=1.1e+02 Score=32.36 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.4
Q ss_pred ccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 245 MILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 245 ~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
-.+..++++..+.+++=.|| ||++||.
T Consensus 273 y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 273 VTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred cEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 36899999888888999999 8999994
No 276
>PRK14431 acylphosphatase; Provisional
Probab=48.96 E-value=58 Score=26.05 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCC-CeEEEEEeeC
Q 021895 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKL-PVEITCVISN 164 (306)
Q Consensus 102 LreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l-~~~I~~Visn 164 (306)
+|-....+|.++|+..|..+. .+ .|-+.+.|+...+++++..+++|.- .+.|.-|...
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~--~d---gVei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 75 (89)
T PRK14431 17 FRYFTQRIAMNYNIVGTVQNV--DD---YVEIYAQGDDADLERFIQGVIEGASPASNVTSYQLE 75 (89)
T ss_pred EhHHHHHHHhhcCCEEEEEEC--CC---cEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 466777788999987764332 22 3999999999999999999999863 4788776554
No 277
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=48.72 E-value=47 Score=33.45 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeC-CC-CCC-C-------hhHHHHHHhCCCCEEEeC
Q 021895 127 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISN-HD-RGP-N-------SHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 127 ~~~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn-~~-~~~-~-------~~~~~~A~~~gIp~~~~~ 188 (306)
.++||+|.-||.- +.+.+.|-. ++| .||.+|.-+ ++ ++. . ..+.+.|+..|||+++++
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk-~QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vd 70 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLK-EQG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVD 70 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHH-HcC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEc
Confidence 4679999999974 555554432 235 788887653 33 111 1 258899999999999997
No 278
>PRK14430 acylphosphatase; Provisional
Probab=48.57 E-value=67 Score=25.88 Aligned_cols=59 Identities=15% Similarity=-0.008 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 102 LreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
+|.-....|.++|+..|.-++ +.-+|-+++.|....++.|++.+++|.-.+.|.-|-..
T Consensus 19 FR~~~~~~A~~lgl~G~VrN~----~dGsVei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (92)
T PRK14430 19 YRAACADAADDLGLGGWVRNR----ADGTVEVMASGTVRQLEALRAWMEAGPPAAQVTKVEVG 77 (92)
T ss_pred eHHHHHHHHHHhCCEEEEEEC----CCCcEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 577777889999987764322 22358899999999999999999887544788777544
No 279
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=48.33 E-value=75 Score=31.64 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=37.8
Q ss_pred CCceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCC-CCC-CC---hhHHHHHHhCCCCEEEeCC
Q 021895 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNH-DRG-PN---SHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 127 ~~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~-~~~-~~---~~~~~~A~~~gIp~~~~~~ 189 (306)
+..||+|..||.- +.+..+|.. .| .++.+|.-+. +.. +. ..+.+.|++.|||+++++.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~--~G---~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~ 68 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE--AG---YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDA 68 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH--cC---CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEec
Confidence 4569999999974 344444432 34 5777776643 210 11 2467899999999999763
No 280
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=48.13 E-value=36 Score=33.94 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=33.0
Q ss_pred ceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCCCCCCC------------hhHHHHHHhCCCCEEEeCC
Q 021895 129 YKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN------------SHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 129 ~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~------------~~~~~~A~~~gIp~~~~~~ 189 (306)
+||+|..||.- +.+.+.|-. ++| .+|++|....-+..+ ..+.+.|+..|||+++++.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk-~~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~ 70 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK-EQG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDL 70 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH-HCT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEET
T ss_pred CeEEEEccCCHHHHHHHHHHH-hhc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEECh
Confidence 59999999974 444444432 355 788888764322111 2478889999999999873
No 281
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.93 E-value=87 Score=31.58 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=52.0
Q ss_pred CCCCceEEEEEeCCcchHHHHHHhhhc-CCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCChHHHHHHHh
Q 021895 125 IDPKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENEREEELLELV 202 (306)
Q Consensus 125 ~~~~~riavl~S~~g~~L~~ll~~~~~-g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k-~~~~e~e~~~~v 202 (306)
.+...|+++++-+.- -.+++.++.. ++..++|+||.+- +-..++++|++|++| ..| ....| +++
T Consensus 3 ~s~~ir~Gi~g~g~i--a~~f~~al~~~p~s~~~Ivava~~----s~~~A~~fAq~~~~~----~~k~y~syE----eLa 68 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRI--ARDFVRALHTLPESNHQIVAVADP----SLERAKEFAQRHNIP----NPKAYGSYE----ELA 68 (351)
T ss_pred CCceeEEEEeehhHH--HHHHHHHhccCcccCcEEEEEecc----cHHHHHHHHHhcCCC----CCccccCHH----HHh
Confidence 346779999988763 2344443322 2235899999875 356789999999996 111 22334 234
Q ss_pred c--CCcEEEEeccCCCCcCchhhhhh
Q 021895 203 Q--NTDFLVLARYMQPVPLQKEAYLG 226 (306)
Q Consensus 203 ~--~~D~vVlA~ym~~~~~~~~~~~~ 226 (306)
+ .+|+|++. -|+|.-.|.-..
T Consensus 69 kd~~vDvVyi~---~~~~qH~evv~l 91 (351)
T KOG2741|consen 69 KDPEVDVVYIS---TPNPQHYEVVML 91 (351)
T ss_pred cCCCcCEEEeC---CCCccHHHHHHH
Confidence 4 56887764 456665555433
No 282
>PRK14440 acylphosphatase; Provisional
Probab=47.86 E-value=69 Score=25.66 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-....|.++|+..+.-++.+ - +|-+.+.|+...+++++..+++|.-.+.|.-|-..
T Consensus 17 GFR~~v~~~A~~~gl~G~V~N~~d--G--~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i~~~ 76 (90)
T PRK14440 17 GFRKFVQIHAIRLGIKGYAKNLPD--G--SVEVVAEGYEEALSKLLERIKQGPPAAEVEKVDFS 76 (90)
T ss_pred CchHHHHHHHHHcCCEEEEEECCC--C--CEEEEEEcCHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 367788888999998775332322 2 68888999888999999999887534667665544
No 283
>PRK14426 acylphosphatase; Provisional
Probab=47.53 E-value=73 Score=25.53 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCC-CCeEEEEEeeC
Q 021895 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGK-LPVEITCVISN 164 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~-l~~~I~~Visn 164 (306)
--+|.-...+|.++|+..|..++.|. .|-+.+.|+...+.+++..++.|. ..+.|.-|...
T Consensus 17 VGFR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~~G~~~~i~~f~~~l~~g~P~~a~V~~i~~~ 78 (92)
T PRK14426 17 VGFRYHTQHEALKLGLTGYAKNLDDG----SVEVVACGEEEQVEKLMEWLKEGGPRSARVDRVLTE 78 (92)
T ss_pred cCchHHHHHHHHHhCCEEEEEECCCC----cEEEEEEeCHHHHHHHHHHHhcCCCCCeEEEEEEEE
Confidence 34688888899999988764433332 588899999889999999998873 33777766554
No 284
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=47.46 E-value=68 Score=29.54 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=44.7
Q ss_pred ceEEEEEeCCcchHH---HHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC--CC-h--------
Q 021895 129 YKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE--NE-R-------- 194 (306)
Q Consensus 129 ~riavl~S~~g~~L~---~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~--~~-~-------- 194 (306)
+||.|.+.+.+..++ +|...+..- .+++..+ +.. . .....+.+.+|++++.++... .. .
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~~-~---~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~ 73 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GTK-R---GLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPL 73 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eCC-C---cchhcccccCCCceEEEeccCcCCCChHHHHHHHH
Confidence 378888888764443 566666543 3787766 432 1 112234456899998887321 00 0
Q ss_pred H-----HHHHHHhc--CCcEEEEecc
Q 021895 195 E-----EELLELVQ--NTDFLVLARY 213 (306)
Q Consensus 195 e-----~e~~~~v~--~~D~vVlA~y 213 (306)
+ .++.++++ ++|+|+..+.
T Consensus 74 ~~~~~~~~l~~~i~~~~pDvVi~~~~ 99 (348)
T TIGR01133 74 KLLKAVFQARRILKKFKPDAVIGFGG 99 (348)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0 13444454 7999998643
No 285
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=47.45 E-value=80 Score=27.00 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=42.5
Q ss_pred ceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 129 ~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
+||.|+.+++- .-.++++.... +.+.+.=+++......+++..+.+.++++||+......+.-+ ++ .+.++
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~h~s~~lt--~~---~~~~~ 76 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGRKLT--AE---MARNY 76 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCCCCCCCCHHHHHHHHHcCCCcCCCccCcCC--HH---HHhhC
Confidence 58888888874 23445554432 222222233322111225677899999999986431111111 12 23479
Q ss_pred cEEEEecc
Q 021895 206 DFLVLARY 213 (306)
Q Consensus 206 D~vVlA~y 213 (306)
|+|+...-
T Consensus 77 DlIl~M~~ 84 (144)
T PRK11391 77 DLILAMES 84 (144)
T ss_pred CEEEECCH
Confidence 99998754
No 286
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=47.23 E-value=1.2e+02 Score=29.36 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=29.1
Q ss_pred EEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 021895 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 133 vl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
||.-+. ++-+.-|..+++.|+ ...|.++ -+++........+...++|||+.+++.
T Consensus 119 ILT~~~S~tv~~~l~~a~~~~~-~f~V~v~-EsrP~~~G~~~a~~L~~~gI~vtlI~D 174 (301)
T TIGR00511 119 VMTHCNSEAALSVIKTAFEQGK-DIEVIAT-ETRPRKQGHITAKELRDYGIPVTLIVD 174 (301)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-cEEEEEe-cCCCcchHHHHHHHHHHCCCCEEEEeh
Confidence 444443 444554555556664 3455432 333222222334456778999999863
No 287
>PRK14561 hypothetical protein; Provisional
Probab=47.07 E-value=36 Score=30.55 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=32.7
Q ss_pred ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCC-CCCChhHHHHHHhCCCCEEEeC
Q 021895 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~-~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
|||+|+.||.- +.+..++... .++.++-.+.. +..-..+...|+..|+|.+++.
T Consensus 1 mkV~ValSGG~DSslll~~l~~~------~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF------YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc------CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 58999999974 3443333321 23333332321 1122467889999999999886
No 288
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=47.03 E-value=65 Score=27.26 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=37.6
Q ss_pred eEEEEEeCCc--chHHHHHHhhhcCCC--CeEEEEEeeCCCCCC-----ChhHHHHHHhCCCCEEEeC
Q 021895 130 KVAVLASKQE--HCLVDFLYGWQEGKL--PVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~g~l--~~~I~~Visn~~~~~-----~~~~~~~A~~~gIp~~~~~ 188 (306)
||+|..||.- ..|-.++..+.. .. +.++.++..|+.-.. ...+.++|++.|||+.++.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQR-RYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVS 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHh-hcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEe
Confidence 6899999975 444445544432 22 357777777753211 1357788999999998876
No 289
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=47.03 E-value=3.7e+02 Score=28.28 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=67.6
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHhhhhccccee
Q 021895 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPI-KWPREQMDEDFFKLSKMFNAMRSVV 120 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id-~l~G~FfMrmeVdv~~~-~~~~eeLreaL~~la~elgl~~~~~ 120 (306)
.++++.-+-+. ..+.+.|.++|++.++.+..-. ..++. +.+-.+-. -.....+.++-+.++.-++++.
T Consensus 88 ~li~~l~p~~~---~~l~~~l~~~~it~ia~e~vpr~sraq~----~d~lssma~IAGy~Av~~aa~~~~~~~~g~~--- 157 (509)
T PRK09424 88 TLVSFIWPAQN---PELLEKLAARGVTVLAMDAVPRISRAQS----LDALSSMANIAGYRAVIEAAHEFGRFFTGQI--- 157 (509)
T ss_pred EEEEEeCcccC---HHHHHHHHHcCCEEEEeecccccccCCC----cccccchhhhhHHHHHHHHHHHhcccCCCce---
Confidence 45555555332 4677889999999999988631 01111 11111100 1123344444444444443221
Q ss_pred eecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC
Q 021895 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 121 rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
......+..||+|++.|.- -|.++..+...| ++|.++=.+ ...++.|++.|.-+..++
T Consensus 158 taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lG---A~V~a~D~~------~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 158 TAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLG---AIVRAFDTR------PEVAEQVESMGAEFLELD 215 (509)
T ss_pred eccCCcCCCEEEEECCcHH-HHHHHHHHHHCC---CEEEEEeCC------HHHHHHHHHcCCeEEEec
Confidence 1223456789999998863 334444443344 555443322 245889999998866555
No 290
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=46.52 E-value=1.9e+02 Score=28.64 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=33.6
Q ss_pred HHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCcccccc-ccCCHhHHh-hcCCCeeEeCCCCCCCCCC
Q 021895 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN-MILSGKFLR-SYGKDVINIHHGLLPSFKG 272 (306)
Q Consensus 199 ~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~il~~~~l~-~~~~~iINiHpsLLP~f~G 272 (306)
.+.++++|+|..-+ +|+|++-..+- ...++. -.+..+.+. ..+.+.|=.|| ||+++|
T Consensus 221 ~ea~~~aDvvyt~~------~q~e~~~~~~~---------~~~~~~~y~v~~e~l~~~a~~~ai~mHc--LP~~~~ 279 (338)
T PRK08192 221 EGNLDKADILYLTR------IQEERFPSQEE---------ANKYRGKFRLNQSIYTQHCKSNTVIMHP--LPRDSR 279 (338)
T ss_pred HHHHccCCEEEEcC------cccccccchHH---------HHHhhhccccCHHHHHhhhCCCCEEECC--CCCCCC
Confidence 45566899998854 24555321111 111111 257888884 46667888898 788853
No 291
>PRK14427 acylphosphatase; Provisional
Probab=46.42 E-value=69 Score=25.84 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|--...+|.++|+..|..++. .-.|-+.+.|+...+.+++..++.|.-++.|.-|-..
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~~----dGsVei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~~ 79 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNLD----DGSVALVAEGTGEQVEKLLDWLNSDRAPGRVERVDHT 79 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEECC----CCeEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 35777888899999877643332 2368888888888999999999887445777766554
No 292
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=46.40 E-value=96 Score=24.45 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=28.8
Q ss_pred hHHHHHHhCCCCE-EEeCCCCCChHHHHHHHhc--CCcEEEEeccCC
Q 021895 172 HVIRFLERHGIPY-HYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 172 ~~~~~A~~~gIp~-~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~ 215 (306)
.+.+.+++.|++. .+.-..+....+++.+... ++|+||+..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~ 124 (154)
T COG0589 78 EAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGR 124 (154)
T ss_pred HHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCC
Confidence 3466788899885 3332223332355665554 799999999877
No 293
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=46.26 E-value=1.1e+02 Score=31.37 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=51.9
Q ss_pred eEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCC----CCCCChhHHHHHHhCCCCEEEeCCCCCC--hHHHHHHHhc
Q 021895 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH----DRGPNSHVIRFLERHGIPYHYLCAKENE--REEELLELVQ 203 (306)
Q Consensus 130 riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~----~~~~~~~~~~~A~~~gIp~~~~~~k~~~--~e~e~~~~v~ 203 (306)
|+.=.++-+.+.++++=.++.++ .+-+.-|++.| ...+...+.+.|+++|+|+.+=...+.. +|..+-+.++
T Consensus 134 ~l~EvG~tn~t~~~d~~~AIne~--ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la 211 (395)
T COG1921 134 KLVEVGTTNRTHLKDYELAINEN--TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALA 211 (395)
T ss_pred EEEEecccCcCCHHHHHHHhccC--CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHh
Confidence 45555555556677765566555 46677788774 2224456889999999999885433221 2444555565
Q ss_pred -CCcEEEEec
Q 021895 204 -NTDFLVLAR 212 (306)
Q Consensus 204 -~~D~vVlA~ 212 (306)
.+|+|+-.|
T Consensus 212 ~GaDLV~~Sg 221 (395)
T COG1921 212 LGADLVSFSG 221 (395)
T ss_pred cCCCEEEEec
Confidence 799988654
No 294
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=46.12 E-value=2.4e+02 Score=27.25 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=67.3
Q ss_pred eCCcchHHHHHHhh----hcCCCC-eEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCCh-H--------------
Q 021895 136 SKQEHCLVDFLYGW----QEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENER-E-------------- 195 (306)
Q Consensus 136 S~~g~~L~~ll~~~----~~g~l~-~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~-e-------------- 195 (306)
+...|.-|+|+|.. ..|.+. ..|+ .+....+ .-...+..+.+.|+-+.++..++-.. +
T Consensus 124 ~~~~HPtQaL~Dl~Ti~e~~g~l~g~~v~-~vGd~~~-v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g 201 (304)
T TIGR00658 124 TDLFHPCQALADLLTIIEHFGKLKGVKVV-YVGDGNN-VCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENG 201 (304)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCCCcEEE-EEeCCCc-hHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC
Confidence 34458778877653 235565 3343 3343311 11234566778898887776443211 1
Q ss_pred ------HHHHHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCC
Q 021895 196 ------EELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPS 269 (306)
Q Consensus 196 ------~e~~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~ 269 (306)
..+.+.++++|+|..=.|-. .+.+. .-++.+ .-+.+-.++.+.++..+.++|=.|| ||.
T Consensus 202 ~~~~~~~d~~~a~~~aDvvy~~~w~~---~~~~~----~~~~~~------~~~~~y~l~~~~l~~~~~~~ivmHp--lP~ 266 (304)
T TIGR00658 202 GSVELTHDPVEAVKGADVIYTDVWVS---MGEED----KKEERL------KLFRPYQVNEELMELAKPEVIFMHC--LPA 266 (304)
T ss_pred CeEEEEcCHHHHhCCCCEEEEcCccc---Ccccc----ccHHHH------HHhcCCcCCHHHHhhcCCCCEEECC--CCC
Confidence 12335556899999876643 11111 000000 0112225889999998889999999 788
Q ss_pred CCC
Q 021895 270 FKG 272 (306)
Q Consensus 270 f~G 272 (306)
.||
T Consensus 267 ~rg 269 (304)
T TIGR00658 267 HRG 269 (304)
T ss_pred CCC
Confidence 887
No 295
>PRK14444 acylphosphatase; Provisional
Probab=45.57 E-value=82 Score=25.28 Aligned_cols=60 Identities=7% Similarity=-0.034 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|......|.++|+..+.-++ +.-.|-+.+.|+...++++++.+++|...+.|.-+-..
T Consensus 18 GFR~~v~~~A~~lgl~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~~ 77 (92)
T PRK14444 18 NFRAYTRDRAREAGVKGWVRNL----SDGRVEAVFEGSRPAVQKMISWCYSGPSHARVERVEVH 77 (92)
T ss_pred CcHHHHHHHHHHhCCEEEEEEC----CCCcEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 4677888889999987653222 22358899999999999999998877545777766443
No 296
>PRK14441 acylphosphatase; Provisional
Probab=45.47 E-value=74 Score=25.58 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..|..+. +.-+|-+.+.|+...+..+++.+++|...+.|..+-..
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 78 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNL----PDGRVEAEAEGERAAVGALVRWCHAGPPAARVDRVEVE 78 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEEC----CCCEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 3577778889999987764322 33468889999988999999998877545777666543
No 297
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=45.31 E-value=2e+02 Score=27.93 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=34.1
Q ss_pred HHHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccc-cccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 198 ~~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
+.+.++++|+|..-+| | +|++=.. + ...+|+ +--+..+.++..+.+.|=.|| || ||-
T Consensus 210 ~~~a~~~aDvvyt~~~-~-----~er~~~~--~-------~~~~~~~~y~v~~ell~~a~~~ai~mHc--lP--Rg~ 267 (301)
T TIGR00670 210 LEEVIDEADVLYVTRI-Q-----KERFPDP--E-------EYEKYKGSYGITLERLEAAKKGVIIMHP--LP--RVD 267 (301)
T ss_pred HHHHhCCCCEEEECCc-c-----ccccCCH--H-------HHHHHhcCCeECHHHHhhcCCCCEEECC--CC--CCc
Confidence 3455668999988665 3 3332100 0 011122 235888888888888898998 44 774
No 298
>PRK14445 acylphosphatase; Provisional
Probab=45.08 E-value=70 Score=25.51 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..+..+.. .-+|-+.+.|+...+++++..+++|.-.+.|.-+-..
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~----dG~Vei~~qG~~~~l~~f~~~l~~gP~~a~V~~i~~~ 77 (91)
T PRK14445 18 GFRMFIDRAASELNLSGWVRNLP----DGTVEIEAQGSSGMIDELIKQAERGPSRSSVTSIMVE 77 (91)
T ss_pred CChHHHHHHHhhCCCEEEEEECC----CCeEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 35777888899999877543232 2358888899888999999999877434777766554
No 299
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=44.83 E-value=3.5e+02 Score=27.45 Aligned_cols=132 Identities=9% Similarity=0.063 Sum_probs=74.8
Q ss_pred CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccc---eeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeE
Q 021895 81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE 157 (306)
Q Consensus 81 ~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~---~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~ 157 (306)
.|.|-+.++ ++.+ ....+|..+|+++-++|..+.. ....+-..-++||+|..|.+|-.++|++.-++.-.-.++
T Consensus 82 ~G~~ql~v~-~i~~--~G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~ 158 (432)
T TIGR00237 82 RGDYQIICF-EMQP--AGEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRRDPSLK 158 (432)
T ss_pred CCcEEEEEE-Eecc--CChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhhCCCce
Confidence 566664443 2332 2577888888888877753321 001111223579999999999999999987765432256
Q ss_pred EEEEee--CCCCCCC--hhHHHHHHhCC-CCEEEeCCCCCCh-------HHHHHHHhcCCcEEEEeccCC
Q 021895 158 ITCVIS--NHDRGPN--SHVIRFLERHG-IPYHYLCAKENER-------EEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 158 I~~Vis--n~~~~~~--~~~~~~A~~~g-Ip~~~~~~k~~~~-------e~e~~~~v~~~D~vVlA~ym~ 215 (306)
|...=+ .-+..+. +.+++.+...+ +.+.++.+-+... |+++++.+.+.-+=|+.|-+|
T Consensus 159 ~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGH 228 (432)
T TIGR00237 159 VVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGH 228 (432)
T ss_pred EEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCc
Confidence 543222 2211111 23455555443 6777777654332 367888876544445555555
No 300
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=44.72 E-value=23 Score=29.09 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=47.8
Q ss_pred hHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHh-
Q 021895 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGK- 250 (306)
Q Consensus 172 ~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~- 250 (306)
...+.|+++|+++.+... .+.++-+.+.+.|+++++-=.+ ..-++
T Consensus 19 km~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill~PQv~------------------------------~~~~~i 64 (99)
T cd05565 19 ALNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVILAPQMA------------------------------SYYDEL 64 (99)
T ss_pred HHHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEEcChHH------------------------------HHHHHH
Confidence 467889999999887542 2445556666899999875443 11122
Q ss_pred --HHhhcCCCeeEeCCCCCC--CCCCCcHHHHHH
Q 021895 251 --FLRSYGKDVINIHHGLLP--SFKGGKPAKQVG 280 (306)
Q Consensus 251 --~l~~~~~~iINiHpsLLP--~f~Ga~p~~~A~ 280 (306)
.+..+..++.-|-+-... ..+|.+-.++++
T Consensus 65 ~~~~~~~~ipv~~I~~~~Yg~~~~dg~~vl~~~~ 98 (99)
T cd05565 65 KKDTDRLGIKLVTTTGKQYIELTRDPDGALKFVL 98 (99)
T ss_pred HHHhhhcCCCEEEeCHHHHhHHhCCHHHHHHHHh
Confidence 233445567777666666 667776666653
No 301
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=44.34 E-value=77 Score=31.09 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=35.9
Q ss_pred ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCC-CC------------CChhHHHHHHhCCCCEEEeC
Q 021895 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHD-RG------------PNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~-~~------------~~~~~~~~A~~~gIp~~~~~ 188 (306)
+||+|..||.- +.+..+|.. .| .++.++..+.. .. ....+.+.|+.+|||+++++
T Consensus 1 ~kVlValSGGvDSsvla~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd 70 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE--QG---YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVD 70 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH--cC---CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEe
Confidence 48999999974 344444432 33 56777766541 10 01357889999999999886
No 302
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=43.91 E-value=87 Score=26.03 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=25.9
Q ss_pred EEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCC------hhHHHHHHhCCCCEEEeC
Q 021895 133 VLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN------SHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 133 vl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~------~~~~~~A~~~gIp~~~~~ 188 (306)
+.+|++- .-.+|-...+.| +.-||.|++++.. ....+.|+++|+-|++++
T Consensus 9 ~~vs~Q~-~~~d~~~la~~G-----fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iP 64 (110)
T PF04273_consen 9 LSVSGQP-SPEDLAQLAAQG-----FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIP 64 (110)
T ss_dssp EEEECS---HHHHHHHHHCT-------EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--
T ss_pred eEECCCC-CHHHHHHHHHCC-----CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEee
Confidence 3556654 233443333455 6679999876421 135678999999999999
No 303
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=43.66 E-value=2.8e+02 Score=27.81 Aligned_cols=186 Identities=10% Similarity=0.075 Sum_probs=91.2
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeec
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~ 123 (306)
-|.+.|-.-.|-. -+..+|.+.||+++.++... +|.|. ..+..+..++++++...+....+|+ ..
T Consensus 174 kVvvD~~nG~~~~-~~~~ll~~lg~~v~~i~~~~---dg~~~-----~~~~~~~~l~~l~~~v~~~~adlGi------a~ 238 (443)
T PRK14320 174 KVVVDCAHGAASH-NFEALLDKFGINYVSIASNP---DGLNI-----NVGCGATCVSNIKKAVKEQKADLGI------SL 238 (443)
T ss_pred EEEEECCCchHHH-HHHHHHHHcCCcEEEECCcC---CCCCC-----CCCCchHhHHHHHHHHHHcCCCEEE------EE
Confidence 4555666555432 23456777899998887643 45552 1111112344555555444444543 23
Q ss_pred CCCCCceEEEEEeCCcc-----hHHHHHHhh--hcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHH
Q 021895 124 DIDPKYKVAVLASKQEH-----CLVDFLYGW--QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREE 196 (306)
Q Consensus 124 ~~~~~~riavl~S~~g~-----~L~~ll~~~--~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~ 196 (306)
|.|-- |++++ ...|. -+.+|+..+ +.+.-..-|+-+.||. .+.+.|+++|+++...+.- ..
T Consensus 239 DgDaD-R~~~v-d~~G~~l~gd~~~al~a~~l~~~~~~~~vV~~~~~s~------~~~~~~~~~g~~~~~t~vG----~~ 306 (443)
T PRK14320 239 DGDAD-RIIIV-DENGQEIDGDGILNILAQYSDICGGTNGIVGTQMTNM------SYENHYRANKIPFIRSKVG----DR 306 (443)
T ss_pred CCCCc-eEEEE-CCCCcccCHHHHHHHHHHHHHHhCCCCCEEEecCCcH------HHHHHHHHCCCCEEEecCc----hH
Confidence 44444 67765 45542 233333221 1121112234444443 5778999999999886521 22
Q ss_pred HHHHHhcCCcEEEEec-----cCCC-CcCchhhhhhh-hhhhhhccCC-CccccccccCCHhHHhhcCCCeeEeC
Q 021895 197 ELLELVQNTDFLVLAR-----YMQP-VPLQKEAYLGY-KLLESLSSKG-SLTSYFNMILSGKFLRSYGKDVINIH 263 (306)
Q Consensus 197 e~~~~v~~~D~vVlA~-----ym~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~il~~~~l~~~~~~iINiH 263 (306)
.+.+.+.+.+ .+++| |.-| .-...|+.+.. +++|-|+..| ++.+.. .+ ...|+.+.+|+.
T Consensus 307 ~i~~~m~~~~-~~~ggE~sG~~~~~~~~~~~Dgi~a~~~lle~la~~~~~ls~l~----~~--~~~~~~~~~~~~ 374 (443)
T PRK14320 307 YVLEDLVKYG-YKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKPVSEFK----LQ--GELMQQTLINVP 374 (443)
T ss_pred HHHHHHHhCC-CcEeecCCccEEccCCCCcCCHHHHHHHHHHHHHHcCCCHHHHh----cc--cccCceEEEEEE
Confidence 3333333223 23332 1111 01134554433 7788888765 554432 22 134566777766
No 304
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=43.61 E-value=78 Score=32.08 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=36.5
Q ss_pred CCceEEEEEeCCcchHHHHHHh---hhcCC---CCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 021895 127 PKYKVAVLASKQEHCLVDFLYG---WQEGK---LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~---~~~g~---l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
++.-+.|.+|++|++.+-+... .+.++ -.+...++||.+ +++..++|+++|+++..++.
T Consensus 110 ~~~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~----~s~L~~~a~~~g~~~f~ip~ 174 (410)
T PRK03868 110 LENTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDP----DSKLEQFAKENNIKCFNIPK 174 (410)
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecC----CchHHHhHHhcCCcEEecCC
Confidence 3445889999999665544321 11111 123344466654 34689999999999887663
No 305
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=43.56 E-value=3.5e+02 Score=27.11 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=89.7
Q ss_pred EEEEEEcCCccchHHHH-HHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceee
Q 021895 43 GIHVFHCPDEVGIVAKL-SECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (306)
Q Consensus 43 ~ILTViGpDRpGIVAaV-S~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~r 121 (306)
+-|.+.|..-.| ..+ ..+|.+.||+++.++... +|.|. ..+.....+++|++...+....+|+
T Consensus 173 lkVvvD~~~G~~--~~~~~~ll~~lg~~v~~in~~~---d~~~~-----~~~~~~~~l~~l~~~v~~~~adlGi------ 236 (443)
T TIGR01455 173 LKVVLDCANGAA--YKVAPHVFRELGAEVIAIGVEP---DGLNI-----NDGCGSTHLDALQKAVREHGADLGI------ 236 (443)
T ss_pred CEEEEECCCchH--HHHHHHHHHHcCCEEEEEccCC---CCCCC-----CCCCCCCCHHHHHHHHhhcCCCEEE------
Confidence 445555554333 333 446777899999888754 35552 1111123566777666655555553
Q ss_pred ecCCCCCceEEEEEeCCcc-----hHHHHHHh--hhcCCC-CeEEEE-EeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC
Q 021895 122 VPDIDPKYKVAVLASKQEH-----CLVDFLYG--WQEGKL-PVEITC-VISNHDRGPNSHVIRFLERHGIPYHYLCAKEN 192 (306)
Q Consensus 122 l~~~~~~~riavl~S~~g~-----~L~~ll~~--~~~g~l-~~~I~~-Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~ 192 (306)
..|.|-. |+++ +..+|. -+.+|+.. ++.+.. +..|+. |.| ...+.+.|+++|..++....
T Consensus 237 a~DgD~D-R~~~-vd~~G~~l~~d~~~al~a~~ll~~~~~~~~~vv~~v~s------s~~l~~~a~~~g~~v~~t~v--- 305 (443)
T TIGR01455 237 AFDGDAD-RVLA-VDANGRIVDGDQILYIIARALKESGELAGNTVVATVMS------NLGLERALEKLGLTLIRTAV--- 305 (443)
T ss_pred EEcCCCc-eEEE-ECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEccC------CHHHHHHHHHcCCeEEEeCC---
Confidence 2344444 6655 465552 22233322 222212 123322 222 23578899999999888652
Q ss_pred ChHHHHHHHhcCCcEEEEec-----cCCCC-cCchhhhhhh-hhhhhhccCC-Cccccccc
Q 021895 193 EREEELLELVQNTDFLVLAR-----YMQPV-PLQKEAYLGY-KLLESLSSKG-SLTSYFNM 245 (306)
Q Consensus 193 ~~e~e~~~~v~~~D~vVlA~-----ym~~~-~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 245 (306)
-...+.+.+.+.+ ++++| |+-|- -.-+|+.+.. ++.|-|+..| ++.+...+
T Consensus 306 -G~~~i~~~m~~~~-~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~~~~~l~~l~~~ 364 (443)
T TIGR01455 306 -GDRYVLEEMRESG-YNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKKSGSTLSELAAE 364 (443)
T ss_pred -hHHHHHHHHHhcC-CEEEEcCcceEEecCCCcCCcHHHHHHHHHHHHHHhCCCHHHHHhh
Confidence 1233444444333 34443 33321 1236666554 7788887665 55554443
No 306
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=43.49 E-value=69 Score=32.32 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=38.6
Q ss_pred CCceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCC-CC---CC--------ChhHHHHHHhCCCCEEEeC
Q 021895 127 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNH-DR---GP--------NSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 127 ~~~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~-~~---~~--------~~~~~~~A~~~gIp~~~~~ 188 (306)
...||+|..||.- +...+.|-+ .+| ..+++|.... |. .. -..+.+.|+..+||++++.
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~-~~g---~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vn 74 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLA-ARG---YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVN 74 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHH-hcC---CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEe
Confidence 4569999999975 444444433 244 6788887532 11 11 1367888999999999986
No 307
>PRK14437 acylphosphatase; Provisional
Probab=43.25 E-value=81 Score=26.38 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEee
Q 021895 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Vis 163 (306)
--+|.-...+|.++|+..|..++.| -+|-+.+.|+...+++++..+++|.-.+.|.-|-.
T Consensus 36 VGFR~fv~~~A~~lgL~G~V~N~~d----G~Vei~~qG~~~~ie~f~~~L~~gP~~a~V~~i~~ 95 (109)
T PRK14437 36 VFFRESVRKKAEELQLTGWVKNLSH----GDVELVACGERDSIMILTEWLWEGPPQAAVSNVNW 95 (109)
T ss_pred cCchHHHHHHHHHhCCeEEEEECCC----CCEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 4468888888999998776433322 35888999988899999999887744477766544
No 308
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=43.15 E-value=82 Score=26.71 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=26.4
Q ss_pred hHHHHHHhCCCCEEEeC-CCCCCh--HHHHHHHhcCCcEEEEeccCC
Q 021895 172 HVIRFLERHGIPYHYLC-AKENER--EEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 172 ~~~~~A~~~gIp~~~~~-~k~~~~--e~e~~~~v~~~D~vVlA~ym~ 215 (306)
.+.++.++.|+.+.... -++... .+.+.++++++|+||+.|=.-
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45677899998766544 222211 123333444899999998544
No 309
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=43.01 E-value=1.2e+02 Score=29.48 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=26.2
Q ss_pred cchHHHHHHhhhcCCCCeEEEEEee-CCCCCCChh-HHHHHHhCCCCEEEeC
Q 021895 139 EHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSH-VIRFLERHGIPYHYLC 188 (306)
Q Consensus 139 g~~L~~ll~~~~~g~l~~~I~~Vis-n~~~~~~~~-~~~~A~~~gIp~~~~~ 188 (306)
++-+.-|..+++.|+ ...| +++ +++....+. ..+...++|||+.+++
T Consensus 137 ~tv~~~l~~A~~~g~-~~~V--~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~ 185 (303)
T TIGR00524 137 GTALGVIRSAWEDGK-RIRV--IACETRPRNQGSRLTAWELMQDGIDVTLIT 185 (303)
T ss_pred chHHHHHHHHHHcCC-ceEE--EECCCCCccchHHHHHHHHHHCCCCEEEEC
Confidence 455555556666765 2343 333 343322212 2455677899999986
No 310
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=42.97 E-value=60 Score=28.00 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=40.0
Q ss_pred EEEEEeCC--cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC--------------C--
Q 021895 131 VAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE--------------N-- 192 (306)
Q Consensus 131 iavl~S~~--g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~--------------~-- 192 (306)
|++|+|.. |++--+++.+..+ ..+|+++..++ .-....+.++++.-++-++.... .
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d---~f~v~~Lsa~~---n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~ 74 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPD---KFEVVALSAGS---NIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIE 74 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTT---TEEEEEEEESS---THHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCC---ceEEEEEEcCC---CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCE
Confidence 45666654 3444455554311 26777777765 22345666777776666654211 0
Q ss_pred --ChHHHHHHHhc--CCcEEEEe
Q 021895 193 --EREEELLELVQ--NTDFLVLA 211 (306)
Q Consensus 193 --~~e~e~~~~v~--~~D~vVlA 211 (306)
.-++.+.+++. ++|++|.|
T Consensus 75 v~~G~~~l~~~~~~~~~D~vv~A 97 (129)
T PF02670_consen 75 VLSGPEGLEELAEEPEVDIVVNA 97 (129)
T ss_dssp EEESHHHHHHHHTHTT-SEEEE-
T ss_pred EEeChHHHHHHhcCCCCCEEEEe
Confidence 01345667766 78998876
No 311
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=42.65 E-value=1.8e+02 Score=23.50 Aligned_cols=42 Identities=5% Similarity=0.139 Sum_probs=30.6
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeeeccC---------CCCeEEEEEEEEeCC
Q 021895 52 EVGIVAKLSECIASRGGNILAADVFVPE---------KKNVFYSRSEFIFDP 94 (306)
Q Consensus 52 RpGIVAaVS~~LAe~G~NIlD~sQ~id~---------l~G~FfMrmeVdv~~ 94 (306)
..+++..+.+.+.+.|+.|++++....+ ..|+|. .+.|+.++
T Consensus 23 ~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv-~~~f~~~~ 73 (97)
T CHL00123 23 LLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYI-QMNYSGNG 73 (97)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEE-EEEEEECH
Confidence 5678888999999999999998865421 245444 66777653
No 312
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=42.48 E-value=52 Score=30.40 Aligned_cols=83 Identities=16% Similarity=0.276 Sum_probs=58.7
Q ss_pred cEEEEEEcCC-ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccccee
Q 021895 42 HGIHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (306)
Q Consensus 42 k~ILTViGpD-RpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~ 120 (306)
.++|-++|.- =.++-..+++.|+++|++++-++.- -+|- ...+.++...+++.+...+.-.|
T Consensus 3 t~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl-----~Yfw---------~~rtP~~~a~Dl~~~i~~y~~~w--- 65 (192)
T PF06057_consen 3 TLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSL-----RYFW---------SERTPEQTAADLARIIRHYRARW--- 65 (192)
T ss_pred EEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechH-----HHHh---------hhCCHHHHHHHHHHHHHHHHHHh---
Confidence 3445554432 1377888999999999999998872 2343 13468999999999998886432
Q ss_pred eecCCCCCceEEEEEeCCcchHHHHHH
Q 021895 121 RVPDIDPKYKVAVLASKQEHCLVDFLY 147 (306)
Q Consensus 121 rl~~~~~~~riavl~S~~g~~L~~ll~ 147 (306)
...||++.+...|-....+++
T Consensus 66 ------~~~~vvLiGYSFGADvlP~~~ 86 (192)
T PF06057_consen 66 ------GRKRVVLIGYSFGADVLPFIY 86 (192)
T ss_pred ------CCceEEEEeecCCchhHHHHH
Confidence 466899999999965444443
No 313
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=42.47 E-value=1.4e+02 Score=22.33 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=23.4
Q ss_pred hCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCC
Q 021895 179 RHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 179 ~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~ 215 (306)
..|+++...-..+.. .+++.+.++ ++|++|+....+
T Consensus 67 ~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~~~ 104 (130)
T cd00293 67 EAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSRGR 104 (130)
T ss_pred cCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCCCC
Confidence 468887654322322 567777776 789999975544
No 314
>PRK08210 aspartate kinase I; Reviewed
Probab=42.29 E-value=53 Score=32.40 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=30.3
Q ss_pred cEEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee
Q 021895 42 HGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (306)
Q Consensus 42 k~ILTViGpDR-pGIVAaVS~~LAe~G~NIlD~sQ~ 76 (306)
-..+++.+.+. +|+.++|.+.|+++|+||.-+.|.
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 34677877665 999999999999999999999885
No 315
>PRK14438 acylphosphatase; Provisional
Probab=42.27 E-value=82 Score=25.17 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~ 165 (306)
-+|.-...+|.++|+..|..++. .-.|-+.+.|+...++++++.+++|...+.|..|....
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~~ 77 (91)
T PRK14438 17 AFRHHTQQTAQRLNVSGWVKNLP----NGSVQGCFEGEETDVAALIDWCHHGPSRARVSGVIVER 77 (91)
T ss_pred CccHHHHHHHHHcCCEEEEEECC----CCEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEEE
Confidence 35777788899999877643332 23677888888889999999998775447777666543
No 316
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=41.98 E-value=2.5e+02 Score=27.81 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=34.7
Q ss_pred HHHhcCCcEEEEeccCCC---CcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhc-CCCeeEeCCCCCCCCCC
Q 021895 199 LELVQNTDFLVLARYMQP---VPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKG 272 (306)
Q Consensus 199 ~~~v~~~D~vVlA~ym~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~-~~~iINiHpsLLP~f~G 272 (306)
.+.++++|+|..-.|..- ..+++|+. .....--++.+.++.. +.++|=.|| ||+++|
T Consensus 220 ~ea~~~aDvvytd~W~sm~~~~~~~~er~---------------~~~~~y~v~~~lm~~a~k~~~ivmHc--LP~~~~ 280 (336)
T PRK03515 220 AEGVKGADFIYTDVWVSMGEPKEVWAERI---------------ALLRPYQVNSKMMQLTGNPQVKFLHC--LPAFHD 280 (336)
T ss_pred HHHhCCCCEEEecCcccCcchhHHHHHHH---------------HhccCCccCHHHHhcccCCCCEEECC--CCCCCC
Confidence 455668999999877541 01233331 1112235788888874 566888898 677644
No 317
>PRK14428 acylphosphatase; Provisional
Probab=41.82 E-value=1e+02 Score=25.24 Aligned_cols=60 Identities=12% Similarity=0.000 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|--...+|.++|+..|..+..| -+|-+.+.|+...++++++.+++|.-.+.|.-|...
T Consensus 22 GFR~fv~~~A~~lgL~G~V~N~~d----GsVei~~qG~~~~i~~fi~~l~~gP~~a~V~~v~~~ 81 (97)
T PRK14428 22 GFRYFTVTQARRLGVQGWVRNCRD----GSVELEAQGSSDAVQALVEQLAIGPRWSEVSHVAVH 81 (97)
T ss_pred cchHHHHHHHHHcCCEEEEEECCC----CEEEEEEEcCHHHHHHHHHHHhhCCCccEEEEEEEE
Confidence 357777888999998776432322 258888999989999999999876444778776554
No 318
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=41.79 E-value=77 Score=24.73 Aligned_cols=53 Identities=11% Similarity=0.295 Sum_probs=37.0
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeeec---------cCCCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 021895 52 EVGIVAKLSECIASRGGNILAADVFV---------PEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (306)
Q Consensus 52 RpGIVAaVS~~LAe~G~NIlD~sQ~i---------d~l~G~FfMrmeVdv~~~~~~~eeLreaL~ 107 (306)
...++..+.+.+.++|+.|..++... ....|+|+ .+.|+.++. ...+|++.|.
T Consensus 18 ~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k~~~G~Y~-~~~f~~~~~--~i~el~~~l~ 79 (92)
T PF01250_consen 18 IKKLIERVKKIIEKNGGVVRSVENWGKRRLAYPIKKQKEGHYF-LFNFDASPS--AIKELERKLR 79 (92)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEEEESSEETTECEEEEE-EEEEEESTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEeecccccCCCCCCEEEEE-EEEEEeCHH--HHHHHHHHhc
Confidence 55678889999999999999988754 12356666 567776642 4566665554
No 319
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=41.79 E-value=1.4e+02 Score=29.55 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=29.8
Q ss_pred CcchHHHHHHhhhcCCCCeEEEEEee-CCCCCCChhHHHHHHhCCCCEEEeC
Q 021895 138 QEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 138 ~g~~L~~ll~~~~~g~l~~~I~~Vis-n~~~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
..+.+.++|...... ...+.++|+ ++|+.......+..+++|||+.++.
T Consensus 128 ~S~~v~~~l~~A~~~--~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 128 FSKTVLEVLKTAADR--GKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred CcHHHHHHHHHhhhc--CCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEe
Confidence 455666776654433 123555554 4544334455667789999999886
No 320
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=41.78 E-value=1.4e+02 Score=26.52 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=40.9
Q ss_pred CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC-------CccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG-------SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
+||+||.-|=+--||+-==+ ||...|...| |.....+.=++++++..+....+=-.+.|...|+.+
T Consensus 92 rPdvii~nGpg~~vp~~~~~----~l~~~~~~~~~kiIyIES~aRv~~lSlTGklly~~aD~f~VQW~~l~~~yp~a 164 (170)
T PF08660_consen 92 RPDVIISNGPGTCVPVCLAA----KLLRLLGLRGSKIIYIESFARVKTLSLTGKLLYPFADRFIVQWEELAEKYPRA 164 (170)
T ss_pred CCCEEEEcCCceeeHHHHHH----HHHHHhhccCCcEEEEEeeeecCCCchHHHHHHHhCCEEEEcCHHHHhHCCCC
Confidence 89999999988766643222 2232222223 333334445778888888777777777777766554
No 321
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=41.63 E-value=3e+02 Score=26.20 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHH
Q 021895 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR 175 (306)
Q Consensus 99 ~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~ 175 (306)
.+++++..++.+++.-- .-+.-+.|||+.=|.. +....|++++.+..+..|++-=||+ +..
T Consensus 69 ~e~~~~~~~e~a~~va~--------~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS--------~~a 132 (234)
T COG2243 69 REELEDAWEEAAAEVAA--------ELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSS--------FSA 132 (234)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcch--------HHH
Confidence 67777777777766431 1123457888887764 4555667766554466776655655 466
Q ss_pred HHHhCCCCEEEeCCC-----CCChHHHHHHHhcCCcEEEEeccCCCCcCchhh
Q 021895 176 FLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQPVPLQKEA 223 (306)
Q Consensus 176 ~A~~~gIp~~~~~~k-----~~~~e~e~~~~v~~~D~vVlA~ym~~~~~~~~~ 223 (306)
.|.++|+|.-.-+.. ...+++++.+.+.+.|.+|+.--.+..+...+.
T Consensus 133 ~aa~~~~pL~~g~~~l~Vlp~t~~~~~~~~~l~~~d~~VvMK~~~~~~~i~~~ 185 (234)
T COG2243 133 CAARLGVPLVEGDDSLSVLPATRPDEELERALADFDTAVVMKVGRNFEKLRRL 185 (234)
T ss_pred HHHHhCCceeccCceeEEEeccCchhhHHhHHhhCCeEEEEecCCcHHHHHHH
Confidence 789999998664421 223345565667789999998877766666555
No 322
>PRK14450 acylphosphatase; Provisional
Probab=41.55 E-value=92 Score=24.77 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..|..++.| -..|-+.+.|+...+++++..+++|...+.|.-|-..
T Consensus 16 GFR~~v~~~A~~~~l~G~V~N~~d---G~~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~~ 76 (91)
T PRK14450 16 YFRDFTRTQATRLGLCGYAKNLAN---GNEVEVVAEGDKDSLLEFLDLLRSGPPRAEVKEVETS 76 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCC---CCEEEEEEEeCHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 357778888999998776433322 2237788999888999999998877434667665543
No 323
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=41.39 E-value=74 Score=29.49 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=37.3
Q ss_pred CceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC---ChhHHHHHHhCCCCEEEeC
Q 021895 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~---~~~~~~~A~~~gIp~~~~~ 188 (306)
..||+|..||.- +.+..++.. .| .++.+|..+++..+ ...+.++|++.|||++++.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~--~g---~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~ 72 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSD--AG---TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVK 72 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHH--hC---CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 347999999974 444444433 23 46777776653212 1457889999999999886
No 324
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.18 E-value=80 Score=30.95 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=36.0
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc--C----CcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ--N----TDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~----~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
++.|++.||.+......++..|+++++.++ | +|=|.+- .|.|- .++. ++.+.++|+-
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvq---lPLP~----~i~~~~i~~~I~p~K 118 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQ---LPLPA----HIDEARVLQAINPLK 118 (301)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEe---CCCCC----CCCHHHHHhccCchh
Confidence 568999999998887656666778888775 3 3444442 46652 2333 3555665554
No 325
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=41.12 E-value=1.6e+02 Score=28.57 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=28.2
Q ss_pred CcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC
Q 021895 138 QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 138 ~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
+++-+..|..+++.|+ ..+|. |.-+++............+.|||+.+++
T Consensus 119 S~tv~~~l~~A~~~gk-~~~V~-v~EsrP~~qG~~la~eL~~~GI~vtlI~ 167 (275)
T PRK08335 119 SSAVLEILKTAKRKGK-RFKVI-LTESAPDYEGLALANELEFLGIEFEVIT 167 (275)
T ss_pred cHHHHHHHHHHHHcCC-ceEEE-EecCCCchhHHHHHHHHHHCCCCEEEEe
Confidence 4566666666666775 24443 2233433223344444566899999987
No 326
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=41.00 E-value=65 Score=34.26 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=41.2
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC-CCC---------------CChHHHHHHHhcCCcEEEEeccCC
Q 021895 155 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE---------------NEREEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 155 ~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~-~k~---------------~~~e~e~~~~v~~~D~vVlA~ym~ 215 (306)
|+-++....++-. -.....+++.+-++|+.+.+ .|. ...++++.+.++.+|+|+.+|-+-
T Consensus 212 p~ILad~~~~r~~-~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~l 287 (557)
T COG3961 212 PVILADALVSRFG-LEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLL 287 (557)
T ss_pred cEEecchhhhhhh-hHHHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEE
Confidence 4545444444311 12356788999999999988 452 122468888889999999999866
No 327
>PRK14443 acylphosphatase; Provisional
Probab=40.99 E-value=1e+02 Score=25.00 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCC-CeEEEEEeeC
Q 021895 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKL-PVEITCVISN 164 (306)
Q Consensus 102 LreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l-~~~I~~Visn 164 (306)
+|.-....|.++|+..|.-++. .-+|-+.+.|+...++++++.+++|.- .+.|..|...
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~----dG~Vei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 78 (93)
T PRK14443 19 FRYTTKHVAYKYDISGTVKNLD----DGSVEIHAIAEEENLNKFIDAIKKGPSPGCRIEHVYIY 78 (93)
T ss_pred CcHHHHHHHHHcCCEEEEEECC----CCEEEEEEECCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 5677778889999877643222 236888889988899999999998864 3788776654
No 328
>PLN02748 tRNA dimethylallyltransferase
Probab=40.87 E-value=1.8e+02 Score=30.30 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCCcccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhc-CCeEeEeeeec--c------------CCCCe-EEEEEEEE
Q 021895 28 PGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASR-GGNILAADVFV--P------------EKKNV-FYSRSEFI 91 (306)
Q Consensus 28 ~~~~~~~~~~p~~~k~ILTViGpDRpGIVAaVS~~LAe~-G~NIlD~sQ~i--d------------~l~G~-FfMrmeVd 91 (306)
||.--|.+.....+..+|.|.||--.|= ..++..|+++ |+-|++.+... . ...|. ..|+=.++
T Consensus 8 ~~~~~~~~~~~~~~~~~i~i~GptgsGK-s~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~ 86 (468)
T PLN02748 8 PGAGEEGSPKQKGKAKVVVVMGPTGSGK-SKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVIS 86 (468)
T ss_pred CCCCCCCCcccCCCCCEEEEECCCCCCH-HHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecC
Confidence 5555566666777778999999999996 4456667775 78899877321 0 01122 33344455
Q ss_pred eCCCCCCHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhh
Q 021895 92 FDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149 (306)
Q Consensus 92 v~~~~~~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~ 149 (306)
+. ..++..+++++-.+..+++- .+-|+-|++-|++-=+++||+..
T Consensus 87 p~-e~ysv~~F~~~A~~~I~~I~------------~rgk~PIlVGGTglYi~aLl~g~ 131 (468)
T PLN02748 87 PS-VEFTAKDFRDHAVPLIEEIL------------SRNGLPVIVGGTNYYIQALVSPF 131 (468)
T ss_pred CC-CcCcHHHHHHHHHHHHHHHH------------hcCCCeEEEcChHHHHHHHHcCc
Confidence 54 46888888877766655542 24478999999988889999754
No 329
>PRK14420 acylphosphatase; Provisional
Probab=40.74 E-value=89 Score=24.76 Aligned_cols=59 Identities=17% Similarity=-0.018 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 102 LreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
+|.-...+|.++|+..+..+. +.-+|-+.+.|+...+++++..+++|.-.+.|.-+-..
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~----~dG~Vei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~~ 75 (91)
T PRK14420 17 FRYFVQMEADKRKLTGWVKNR----DDGTVEIEAEGPEEALQLFLDAIEKGSPFSKVTDVHIE 75 (91)
T ss_pred ChHHHHHHHHHcCCEEEEEEC----CCCcEEEEEEECHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 577778889999987653222 23468889999888999999999888433677666554
No 330
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=40.58 E-value=89 Score=37.08 Aligned_cols=76 Identities=13% Similarity=-0.022 Sum_probs=51.6
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc---C-C-------------CCe--EEEEEEEEeCCCCCCH
Q 021895 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---E-K-------------KNV--FYSRSEFIFDPIKWPR 99 (306)
Q Consensus 39 ~~~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id---~-l-------------~G~--FfMrmeVdv~~~~~~~ 99 (306)
+....+|.++++|.|=+|..|+..|.++|..|.-+..-+. + . ++. =+|.++++-...+...
T Consensus 14 ~~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~d~~~~ 93 (1528)
T PF05088_consen 14 ESDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQSDPEEL 93 (1528)
T ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCCCHHHH
Confidence 3447899999999999999999999999999987655321 1 0 122 3455555533223456
Q ss_pred HHHHHHHHHHHhhhh
Q 021895 100 EQMDEDFFKLSKMFN 114 (306)
Q Consensus 100 eeLreaL~~la~elg 114 (306)
++|+++|..+.++..
T Consensus 94 ~~L~~~L~~VL~dVr 108 (1528)
T PF05088_consen 94 EALREDLERVLEDVR 108 (1528)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777655443
No 331
>PRK14451 acylphosphatase; Provisional
Probab=40.55 E-value=1e+02 Score=24.66 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..|..++.| -+|-+.+.|+...++++++.++.|...+.|.-|-..
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 76 (89)
T PRK14451 17 WFRASAKKLAEQLMISGWARNLAD----GRVEVFACGKEDKLEEFYTWLQKGPLNARVDVCTRE 76 (89)
T ss_pred CchHHHHHHHHHhCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 357778888999998776443332 258888888888999999999877434777666544
No 332
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=39.93 E-value=1.4e+02 Score=24.39 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEee
Q 021895 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Vis 163 (306)
--+|......|.++|+..+.+++.|. +|=+++.|....++.|+..+..|.-.+.|.-|..
T Consensus 17 VGFR~~~~~~A~~lgl~G~V~N~~DG----sVeiva~G~~~~v~~~~~~l~~g~~~a~V~~v~~ 76 (92)
T COG1254 17 VGFRYFTRSEALRLGLTGWVKNLDDG----SVEIVAEGPDEAVEKFIEWLRKGPPAAKVERVEV 76 (92)
T ss_pred ccHHHHHHHHHHHCCCEEEEEECCCC----eEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 34788889999999998876655553 7888999988889999998888832277777765
No 333
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.40 E-value=82 Score=30.61 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=23.4
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.|++.||.+..+...++..|+++.+.++
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~ 81 (282)
T PRK14166 52 AKACEECGIKSLVYHLNENTTQNELLALIN 81 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 678999999998887655556777877775
No 334
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=39.33 E-value=16 Score=31.19 Aligned_cols=76 Identities=24% Similarity=0.278 Sum_probs=38.8
Q ss_pred eEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCC--CCC-hHHHHHHHhcCC
Q 021895 130 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK--ENE-REEELLELVQNT 205 (306)
Q Consensus 130 riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k--~~~-~e~e~~~~v~~~ 205 (306)
||+|+++|. |+.+...|.. .| .+|+.--.+. ..+..+-+.+..+.+....+ .+- -..++.+.++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g---~~V~l~~~~~-----~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NG---HEVTLWGRDE-----EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CT---EEEEEETSCH-----HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHH--cC---CEEEEEeccH-----HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcc
Confidence 799999998 5777776654 33 5665443322 23444445554222111010 110 012344566799
Q ss_pred cEEEEeccCC
Q 021895 206 DFLVLARYMQ 215 (306)
Q Consensus 206 D~vVlA~ym~ 215 (306)
|+|++|=-.+
T Consensus 71 d~IiiavPs~ 80 (157)
T PF01210_consen 71 DIIIIAVPSQ 80 (157)
T ss_dssp SEEEE-S-GG
T ss_pred cEEEecccHH
Confidence 9999986555
No 335
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.32 E-value=90 Score=30.33 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++.+.++ ++|=|.+- .|.|- -+-..++.+.++|+-
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq---lPLp~---~i~~~~i~~~I~p~K 115 (282)
T PRK14169 52 QRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQ---LPLPA---GLDEQAVIDAIDPDK 115 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe---CCCCC---CCCHHHHHhhcCccc
Confidence 678999999998887655556777877775 34556552 45552 111224566666654
No 336
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=39.20 E-value=1.8e+02 Score=22.53 Aligned_cols=44 Identities=14% Similarity=0.316 Sum_probs=28.3
Q ss_pred hHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCC
Q 021895 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 172 ~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~ 215 (306)
...+.+++.|+++...........+++.+..+ ++|+||+..-.+
T Consensus 60 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~ 105 (132)
T cd01988 60 QAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGS 105 (132)
T ss_pred HHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCC
Confidence 34556677899977654222223356777776 799999965544
No 337
>PRK14425 acylphosphatase; Provisional
Probab=38.87 E-value=1.2e+02 Score=24.44 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.....+|.++|+..|..++ +.-.|-+.+.|+...+++++..+++|.-.+.|.-+-..
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~----~dGsVei~~qG~~~~le~f~~~l~~gp~~a~V~~i~~~ 79 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNE----SDGSVTALIAGPDSAISAMIERFRRGPPGASVSGVETE 79 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEEC----CCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 3577788889999987754322 22368889999888999999999877444777665543
No 338
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.86 E-value=81 Score=30.70 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=23.8
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.|++.||.+......++..|+++++.++
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~ 82 (284)
T PRK14170 53 QKRTEEAGMKSVLIELPENVTEEKLLSVVE 82 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 678999999998887656666777888776
No 339
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.68 E-value=3.2e+02 Score=25.18 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=76.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeec
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~ 123 (306)
++-|+=.+...-...+.+.|.+.|+.++|+..... . -.+.++++.++++.
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~-------------------~---a~~~i~~l~~~~~~-------- 64 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNP-------------------F---ASEVIKELVELYKD-------- 64 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCc-------------------c---HHHHHHHHHHHcCC--------
Confidence 33444445556677889999999999999877321 1 12344444444421
Q ss_pred CCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 124 ~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
++ + .+++.|.-.+.+++-.+...| ++ .+||-. -+..+++.|+++|||+.- +.....|+.+..+
T Consensus 65 --~p--~-~~vGaGTV~~~~~~~~a~~aG---A~--FivsP~---~~~~v~~~~~~~~i~~iP----G~~T~~E~~~A~~ 127 (213)
T PRK06552 65 --DP--E-VLIGAGTVLDAVTARLAILAG---AQ--FIVSPS---FNRETAKICNLYQIPYLP----GCMTVTEIVTALE 127 (213)
T ss_pred --CC--C-eEEeeeeCCCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCCEEC----CcCCHHHHHHHHH
Confidence 11 2 346677777777776666666 34 355544 456799999999999754 2223456666666
Q ss_pred -CCcEEEE
Q 021895 204 -NTDFLVL 210 (306)
Q Consensus 204 -~~D~vVl 210 (306)
.+|++-+
T Consensus 128 ~Gad~vkl 135 (213)
T PRK06552 128 AGSEIVKL 135 (213)
T ss_pred cCCCEEEE
Confidence 8999998
No 340
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=38.64 E-value=1.4e+02 Score=28.69 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=64.3
Q ss_pred CceEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCc
Q 021895 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (306)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D 206 (306)
.+||+|.+-|. |.-+...|.+ .| ..+.| ...|+ +..-...|.+.|+...... ....+.+..+|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~--~g-~~v~i----~g~d~--~~~~~~~a~~lgv~d~~~~-------~~~~~~~~~aD 66 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKE--AG-LVVRI----IGRDR--SAATLKAALELGVIDELTV-------AGLAEAAAEAD 66 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHH--cC-CeEEE----EeecC--cHHHHHHHhhcCccccccc-------chhhhhcccCC
Confidence 46888888776 3444444433 22 11222 22332 2335667777887654421 11233444799
Q ss_pred EEEEeccCCCCcCchhhhhhhhhhhhhccCC---CccccccccCCHhHHhhcCC--CeeEeCCCCCC
Q 021895 207 FLVLARYMQPVPLQKEAYLGYKLLESLSSKG---SLTSYFNMILSGKFLRSYGK--DVINIHHGLLP 268 (306)
Q Consensus 207 ~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~il~~~~l~~~~~--~iINiHpsLLP 268 (306)
+||+|=-|. .-+.+|. ++...|.++- ..+|-|..++. .+.+..+. ++|-.||=+=|
T Consensus 67 ~VivavPi~----~~~~~l~-~l~~~l~~g~iv~Dv~S~K~~v~~-a~~~~~~~~~~~vg~HPM~G~ 127 (279)
T COG0287 67 LVIVAVPIE----ATEEVLK-ELAPHLKKGAIVTDVGSVKSSVVE-AMEKYLPGDVRFVGGHPMFGP 127 (279)
T ss_pred EEEEeccHH----HHHHHHH-HhcccCCCCCEEEecccccHHHHH-HHHHhccCCCeeEecCCCCCC
Confidence 999997666 1122211 2322444443 66777777764 34444444 49999986666
No 341
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=38.63 E-value=2e+02 Score=29.03 Aligned_cols=71 Identities=11% Similarity=-0.009 Sum_probs=43.8
Q ss_pred CCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-ChH--HHHHHHhcCCcEEEEecc
Q 021895 137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-ERE--EELLELVQNTDFLVLARY 213 (306)
Q Consensus 137 ~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~-~~e--~e~~~~v~~~D~vVlA~y 213 (306)
+.+.....++...... ...|++=|.|.-+ --.+.|+..|+++...+.=.. ..| ++..++++++|.+|++++
T Consensus 274 ~~~~~~~~~~~~L~~~--g~~v~~g~l~~~d----~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~ 347 (402)
T PRK09536 274 GGGQPAARAVSRLVAA--GASVSVGPVPEGD----TAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGV 347 (402)
T ss_pred CCCCcHHHHHHHHHHC--CCeEEEecCcCcc----hhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCC
Confidence 3444455555554443 3677776766532 236789999999876552111 112 456666779999999875
No 342
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.39 E-value=83 Score=30.60 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+..+...++..|+++.+.++ +.|=+.+- .|+|-.-+ .-++.+.++|+-
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivq---lPLp~~i~---~~~i~~~I~p~K 115 (282)
T PRK14182 52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQ---LPLPKHVD---ERAVLDAISPAK 115 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe---CCCCCCCC---HHHHHhccCccc
Confidence 678999999999887655556777777775 34555552 46652211 124666666655
No 343
>PRK09084 aspartate kinase III; Validated
Probab=37.87 E-value=2e+02 Score=29.27 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=29.9
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 021895 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 42 k~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
-.+|++.|. +.+|+.++|-+.|+++|+||.-+.|
T Consensus 306 i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 306 QTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred EEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec
Confidence 357888876 6889999999999999999999987
No 344
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=37.87 E-value=75 Score=31.66 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=42.9
Q ss_pred CceEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC---CCC-ChHHHHHHHh
Q 021895 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA---KEN-EREEELLELV 202 (306)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~---k~~-~~e~e~~~~v 202 (306)
++||+|+++|. |+.|..+|.. .| ++|..-.-+. ..+.+.-+.| -...|++. +.+ ....++.+.+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~--ng---~~V~lw~r~~-----~~~~~i~~~~-~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR--NG---HEVRLWGRDE-----EIVAEINETR-ENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh--cC---CeeEEEecCH-----HHHHHHHhcC-cCccccCCccCCcccccccCHHHHH
Confidence 36999999997 7999887754 23 4554443332 1233333332 22223331 111 1234566777
Q ss_pred cCCcEEEEeccC
Q 021895 203 QNTDFLVLARYM 214 (306)
Q Consensus 203 ~~~D~vVlA~ym 214 (306)
+++|+||+|==.
T Consensus 70 ~~ad~iv~avPs 81 (329)
T COG0240 70 DGADIIVIAVPS 81 (329)
T ss_pred hcCCEEEEECCh
Confidence 789999998433
No 345
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=37.79 E-value=2e+02 Score=24.35 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=41.5
Q ss_pred eEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCCC---hhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc-
Q 021895 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (306)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~---~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~- 203 (306)
||+|+.||.- ..+..++. +.| .++.++..+....+. ..+...|++.| |..+++.........+.+..+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~--~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~a~~ 74 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAK--KEG---YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPARNLIFLSIAAAYAEA 74 (169)
T ss_pred CEEEEecCcHHHHHHHHHHH--HcC---CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCcCHHHHHHHHHHHHH
Confidence 6899999874 23333332 233 356666655422111 45677888999 665554211111122222223
Q ss_pred -CCcEEEEeccC
Q 021895 204 -NTDFLVLARYM 214 (306)
Q Consensus 204 -~~D~vVlA~ym 214 (306)
+.|.|++.-..
T Consensus 75 ~g~~~i~~G~~~ 86 (169)
T cd01995 75 LGAEAIIIGVNA 86 (169)
T ss_pred CCCCEEEEeecc
Confidence 78888886443
No 346
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=37.74 E-value=4.3e+02 Score=26.42 Aligned_cols=173 Identities=12% Similarity=0.097 Sum_probs=91.3
Q ss_pred cEEEEEEcCCccchHHHH-HHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccccee
Q 021895 42 HGIHVFHCPDEVGIVAKL-SECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaV-S~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~ 120 (306)
.+-|.+.|-.-.| ..+ ..+|.+.||+++.++... +|.|. .-+......++|++...+....+|+
T Consensus 173 ~~kVvvD~~~G~~--~~~~~~ll~~lG~~v~~l~~~~---dg~~~-----~~~~~~~~l~~l~~~v~~~~adlGi----- 237 (440)
T PRK14323 173 GLKVALDCANGAA--YRLAPKVFQAAGADVFALFNTP---DGRNI-----NRGCGSTHPEALQRFVVEGGLDLGV----- 237 (440)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHcCCcEEEEeccC---CCCcC-----CCCCCCCCHHHHHHHHhccCCCEEE-----
Confidence 4566777776666 344 447888999999887743 35552 1111123567777777666666664
Q ss_pred eecCCCCCceEEEEEeCCc-----chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChH
Q 021895 121 RVPDIDPKYKVAVLASKQE-----HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE 195 (306)
Q Consensus 121 rl~~~~~~~riavl~S~~g-----~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e 195 (306)
..|.|-. |++++ ..+| .-+..|+.....+ +.-|+-|.|| ..+.+.|+++|+.++..+. -.
T Consensus 238 -a~DgD~D-R~~~v-D~~G~~i~~d~~~~l~a~~~~~--~~vV~~v~ss------~~~~~~~~~~g~~v~~t~v----G~ 302 (440)
T PRK14323 238 -AFDGDAD-RALFV-DRRGRLFHGDHMLYLNALARGE--KAVVGTVMSN------MALEVKLREAGIAFHRTAV----GD 302 (440)
T ss_pred -EeCCCcc-eeEEE-CCCCcEeCHHHHHHHHHHHhcC--CcEEEEeCCC------hHHHHHHHHcCCeEEEeCC----hH
Confidence 2344444 66665 4444 2223333322211 2222333333 3577899999999988652 12
Q ss_pred HHHHHHhcCCcEEEEec-----cCCCC-cCchhhhhhh-hhhhhhccCC-Cccccccc
Q 021895 196 EELLELVQNTDFLVLAR-----YMQPV-PLQKEAYLGY-KLLESLSSKG-SLTSYFNM 245 (306)
Q Consensus 196 ~e~~~~v~~~D~vVlA~-----ym~~~-~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 245 (306)
.-+.+.+.+-+ ++++| |.-|- -.-.|+.+.. +++|-|+..| ++.+..++
T Consensus 303 ~~i~~~m~~~~-~~~ggE~sG~~~f~~~~~~~Dgi~a~l~~le~la~~~~~ls~l~~~ 359 (440)
T PRK14323 303 RYVHEKLHAKG-LTLGGEQSGHVLFLDHAPTGDGVLTALLTLAAMKALGTDLDAWYDA 359 (440)
T ss_pred HHHHHHHHhcC-CeEEEcCcccEEeCCCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 23444444333 23332 21110 0134554444 6788887665 55554443
No 347
>PRK14452 acylphosphatase; Provisional
Probab=37.39 E-value=1.3e+02 Score=25.12 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=50.5
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 85 YSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 85 fMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
.-+..+.+.+ .+.---+|--...+|.++|+..|..+..| -+|-+.+.|+...++++++.+.+|.-.+.|.-|-..
T Consensus 19 ~~~~~i~V~G-~VQGVGFR~~v~~~A~~lgL~G~V~N~~d----GsVeI~~qG~~~~ve~F~~~l~~gP~~A~V~~v~~~ 93 (107)
T PRK14452 19 AERWRFLIEG-RVQGVGFRASCCRRALDLGLSGWVRNLSD----GSVEVQAEGPPLALSELRAWCERGPPGARVKRVDPS 93 (107)
T ss_pred hEEEEEEEEE-eecCcChhHHHHHHHHHhCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEE
Confidence 3344444433 23334578888889999999876543333 258888899888999998777777444777766554
No 348
>PRK14442 acylphosphatase; Provisional
Probab=36.76 E-value=1.1e+02 Score=24.41 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..|..++.| -.|-+.+.|+...+++++..+++|.-.+.|..|-..
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14442 18 GFRQATREEADRLELDGWVRNLDD----GRVEVVWEGEEDRAKALERWLGRGPRHAEVSAVEVE 77 (91)
T ss_pred cccHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 457777888999998876543333 258888899888999999988876444777776554
No 349
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.70 E-value=2.6e+02 Score=26.57 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCCC-eEEEEEee--CCCCCCC--hhHHHHHHhCC----CCEEEeCCCCCCh---
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVIS--NHDRGPN--SHVIRFLERHG----IPYHYLCAKENER--- 194 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l~-~~I~~Vis--n~~~~~~--~~~~~~A~~~g----Ip~~~~~~k~~~~--- 194 (306)
-++||||..|.+|..++|++.-++. +.| ++|...=+ .-+..+. ..+++.+.+.+ .-+.++.+-+...
T Consensus 13 ~p~~I~vITs~~gAa~~D~~~~~~~-r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL 91 (319)
T PF02601_consen 13 FPKRIAVITSPTGAAIQDFLRTLKR-RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDL 91 (319)
T ss_pred CCCEEEEEeCCchHHHHHHHHHHHH-hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHh
Confidence 4679999999999999999987766 334 55543322 2211111 24456666554 5566666554432
Q ss_pred ----HHHHHHHhcCCcEEEEeccCC
Q 021895 195 ----EEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 195 ----e~e~~~~v~~~D~vVlA~ym~ 215 (306)
|+++++.+.+..+=|+.|-+|
T Consensus 92 ~~FN~e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 92 WAFNDEEVARAIAASPIPVISAIGH 116 (319)
T ss_pred cccChHHHHHHHHhCCCCEEEecCC
Confidence 467888887666667777877
No 350
>PRK14446 acylphosphatase; Provisional
Probab=36.48 E-value=1e+02 Score=24.75 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCC
Q 021895 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165 (306)
Q Consensus 102 LreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~ 165 (306)
+|--...+|.++++..|..+..| -.|-+.+.|+...+.++++.+++|.-.+.|..|....
T Consensus 17 FR~fv~~~A~~lgl~G~V~N~~d----GsVei~~qG~~~~l~~f~~~l~~gP~~a~V~~v~~~~ 76 (88)
T PRK14446 17 YRASTRERAVALGLVGHARNQAD----GSVEVVAAGSAAALEALEAWLWQGPPAATVAAVTRTP 76 (88)
T ss_pred EhHHHHHHHeeCCeEEEEEECCC----CCEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEEE
Confidence 46667778899998776443332 2577888888889999999988775448888776653
No 351
>PRK04998 hypothetical protein; Provisional
Probab=36.43 E-value=2.2e+02 Score=22.63 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=45.0
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHHhhh
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~Ff-MrmeVdv~~~~~~~eeLreaL~~la~el 113 (306)
.|-+.++|+...+.+++|..++.++...-..++.. ..-.|.|. ..+.+.+. +.+++.+-++++.+--
T Consensus 15 ~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r-~S~~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~~ 82 (88)
T PRK04998 15 SFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVK-PSSKGNYHSVSITITAT----SIEQVETLYEELAKIE 82 (88)
T ss_pred CceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEc-cCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhcCC
Confidence 36789999999999999999998874432112221 24468876 45555554 4677777777765443
No 352
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=36.42 E-value=74 Score=31.41 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=35.6
Q ss_pred ceEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCC-CCC---------C---ChhHHHHHHhCCCCEEEeCC
Q 021895 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNH-DRG---------P---NSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~-~~~---------~---~~~~~~~A~~~gIp~~~~~~ 189 (306)
+||+|..||.- +.+..+|.. .| .+|.+|..++ ++. + -..+.+.|+..|||+++++.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 48999999974 333334432 34 5788887632 110 0 12457889999999998863
No 353
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=36.40 E-value=2.7e+02 Score=27.06 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=62.3
Q ss_pred EeCCcchHHHHHHhhh----cC--CCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChH-------------
Q 021895 135 ASKQEHCLVDFLYGWQ----EG--KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE------------- 195 (306)
Q Consensus 135 ~S~~g~~L~~ll~~~~----~g--~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e------------- 195 (306)
+++..|..|+|+|... .| .+..--++.|..+.+-.+ ..+..+...|+-+.+++.++-..+
T Consensus 126 g~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~-Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g 204 (311)
T PRK14804 126 CDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVN-SLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKG 204 (311)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHH-HHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcC
Confidence 3455577777766431 24 343323334444422111 334556677887777765432100
Q ss_pred -----HHHHHHhcCCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC-CccccccccCCHhHHhhcCCCeeEeCCCCCCC
Q 021895 196 -----EELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG-SLTSYFNMILSGKFLRSYGKDVINIHHGLLPS 269 (306)
Q Consensus 196 -----~e~~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~ 269 (306)
..+.+.+.++|+|..=.|.+ .++|-+ ++--+.+. -...+..-.++.+.++. + +.|=.|| ||+
T Consensus 205 ~i~~~~d~~~av~~aDvvy~d~w~~-----~~~~~~---~~~~~~~~~r~~~~~~y~v~~elm~~-~-~~~vmH~--lP~ 272 (311)
T PRK14804 205 TLSWEMNLHKAVSHADYVYTDTWLD-----MEFFND---PSYADKKKQRMELMMPYQINSSLMEK-T-NAKVMHD--MPI 272 (311)
T ss_pred CeEEEeCHHHHhCCCCEEEeeeeEE-----CcccCc---cchHHHHHHHHHhccCCeECHHHHhC-C-CCeEeCC--CCC
Confidence 12334455899999877765 222200 00000000 00111233577777764 2 4666788 799
Q ss_pred CCCC
Q 021895 270 FKGG 273 (306)
Q Consensus 270 f~Ga 273 (306)
+||-
T Consensus 273 ~Rg~ 276 (311)
T PRK14804 273 HAGY 276 (311)
T ss_pred CCCc
Confidence 9884
No 354
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=36.34 E-value=1.1e+02 Score=25.15 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=27.0
Q ss_pred cCCCCeEEEEEeeCCCCC--C----------ChhHHHHHHhCCCCEEEeCCCCCChH--HHHHHHhc
Q 021895 151 EGKLPVEITCVISNHDRG--P----------NSHVIRFLERHGIPYHYLCAKENERE--EELLELVQ 203 (306)
Q Consensus 151 ~g~l~~~I~~Visn~~~~--~----------~~~~~~~A~~~gIp~~~~~~k~~~~e--~e~~~~v~ 203 (306)
.+..+.++++++..++.. + ...+.+++++++|...+++.+..+.+ +++++.++
T Consensus 99 ~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~ 165 (175)
T PF13727_consen 99 NPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELE 165 (175)
T ss_dssp --SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHH
T ss_pred hhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHH
Confidence 455678999999877531 1 13567788888888777774332222 34444444
No 355
>PRK14435 acylphosphatase; Provisional
Probab=36.24 E-value=1.1e+02 Score=24.37 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~ 165 (306)
-+|.-...+|.++|+..+..++.| -.|-+.+.|+...+.+++..+++|...+.|.-|-...
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~~~ 76 (90)
T PRK14435 16 GFRYFTRRVAKSLGVKGYVMNMDD----GSVFIHAEGDENALRRFLNEVAKGPPAAVVTNVSVEE 76 (90)
T ss_pred CChHHHHHHHHHhCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEEE
Confidence 357778888999998775432222 3588888888889999999988774447777665543
No 356
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.22 E-value=1.1e+02 Score=29.78 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++.+.++ ++|=|.+- .|.|-.- -..++.+.++|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq---~Plp~~~---~~~~i~~~I~p~K 117 (296)
T PRK14188 54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQ---LPLPKHL---DSEAVIQAIDPEK 117 (296)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEe---CCCCCCC---CHHHHHhccCccc
Confidence 678999999988877555556777777775 34555552 4665221 1124555665544
No 357
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.06 E-value=93 Score=30.24 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=36.6
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++++.++ ++|=|.+- .|.|-.- -..++.+.++|+-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq---~Plp~~i---~~~~i~~~I~p~K 117 (286)
T PRK14175 54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQ---VPLPKQV---SEQKILEAINPEK 117 (286)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe---CCCCCCC---CHHHHHhccCccc
Confidence 678999999998887655666777887776 34555552 4665211 1123556666554
No 358
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=36.06 E-value=1.9e+02 Score=22.87 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHhcCCeEeEeeeeccC---------CCCeEEEEEEEEeC
Q 021895 53 VGIVAKLSECIASRGGNILAADVFVPE---------KKNVFYSRSEFIFD 93 (306)
Q Consensus 53 pGIVAaVS~~LAe~G~NIlD~sQ~id~---------l~G~FfMrmeVdv~ 93 (306)
.+++..+.+.+.+.|+.|..++....+ .+|+|+ .+.|+.+
T Consensus 18 ~~~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k~~~G~Y~-~~~f~~~ 66 (93)
T TIGR00166 18 KGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYV-LMNFSGE 66 (93)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEeecceecceEcCCCceEEEE-EEEEEeC
Confidence 578888999999999999998765421 356555 5566654
No 359
>PRK13820 argininosuccinate synthase; Provisional
Probab=35.96 E-value=1.1e+02 Score=31.09 Aligned_cols=58 Identities=17% Similarity=0.011 Sum_probs=39.0
Q ss_pred CceEEEEEeCCc--chHHHHHHhhhcCCCCe-EEEEEeeCCCCCC--ChhHHHHHHhCCCCEEEeCC
Q 021895 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPV-EITCVISNHDRGP--NSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~g~l~~-~I~~Visn~~~~~--~~~~~~~A~~~gIp~~~~~~ 189 (306)
..||+|..||.- ..|..+|.. .++. ++.+|..|+.-.. -..+.++|++.|||+++++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e----~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~ 64 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE----KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDA 64 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH----hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 358999999974 444444432 2344 7888877763211 13578899999999999874
No 360
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=35.60 E-value=2e+02 Score=26.93 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc---chHHHHHHhhhc--CCCCeEEEEEeeCCCCCCChh
Q 021895 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQE--GKLPVEITCVISNHDRGPNSH 172 (306)
Q Consensus 98 ~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~--g~l~~~I~~Visn~~~~~~~~ 172 (306)
+.+.+.+..++.++..- .. ...-++|+++.+|.. .....++..+++ ...++||+-=||.
T Consensus 70 ~~~~~~~~~~~~~~~i~-~~-------~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss-------- 133 (238)
T PRK05948 70 DEEQLEQAWQAAADQVW-HY-------LEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCS-------- 133 (238)
T ss_pred ChHHHHHHHHHHHHHHH-HH-------HHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhH--------
Confidence 45666666666554432 10 112357999999974 333444444443 2355666544443
Q ss_pred HHHHHHhCCCCEEEeCCC-----CCChHHHHHHHhcCCcEEEEeccCC
Q 021895 173 VIRFLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 173 ~~~~A~~~gIp~~~~~~k-----~~~~e~e~~~~v~~~D~vVlA~ym~ 215 (306)
+...|.+.|+|...-... ...+.+++.+.+...|.+|+.+-.+
T Consensus 134 ~~a~aa~~g~pL~~~~e~l~ii~~~~~~~~l~~~l~~~~~vVlmk~~~ 181 (238)
T PRK05948 134 PLAAAAALGIPLTLGSQRLAILPALYHLEELEQALTWADVVVLMKVSS 181 (238)
T ss_pred HHHHHHHhCCCeecCCCeEEEEcCCCCHHHHHHHHhCCCEEEEEECCc
Confidence 466778899997532110 1112344555556788888876444
No 361
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=35.44 E-value=2e+02 Score=23.22 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=40.8
Q ss_pred chHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 54 GIVAaVS~~LAe~G~NIlD~sQ~id~l~G~Ff-MrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
.+...|...+.++|++|..++-......+.|. +.+.+++. .+.++|..-|..+...
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~---g~~~~L~~~L~~LE~~ 73 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLE---GDIEALQAFLYALESG 73 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEE---eCHHHHHHHHHHHhcC
Confidence 46778889999999999998876544455554 44444443 3789999999887654
No 362
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=35.27 E-value=2.4e+02 Score=22.72 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=25.6
Q ss_pred HHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCC
Q 021895 177 LERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 177 A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~ 215 (306)
++..|+++...-..+....+++++..+ ++|+||+....+
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~ 114 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD 114 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC
Confidence 345677665443222233567877776 899999998877
No 363
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.26 E-value=1.4e+02 Score=29.24 Aligned_cols=57 Identities=26% Similarity=0.383 Sum_probs=35.4
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++++.++ ++|=|.+- .|.|-. ++. ++.+.++|.-
T Consensus 60 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvq---lPLP~~----i~~~~i~~~I~p~K 123 (287)
T PRK14176 60 HKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQ---LPLPKH----LDPQEAMEAIDPAK 123 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEc---CCCCCC----CCHHHHHhccCccc
Confidence 678999999998887555556777877775 34555552 455521 121 3455555544
No 364
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=35.24 E-value=1.3e+02 Score=29.13 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=46.7
Q ss_pred ceEEEEEeCCc-chH--HHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCCh-----------
Q 021895 129 YKVAVLASKQE-HCL--VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENER----------- 194 (306)
Q Consensus 129 ~riavl~S~~g-~~L--~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~----------- 194 (306)
+||.+.+.|.| |-. .++.+.+++. .++|..|-++..- -.+...++|+|++.++...-.+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~~-----e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 74 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED--NWDISYIGSHQGI-----EKTIIEKENIPYYSISSGKLRRYFDLKNIKDPF 74 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCcc-----ccccCcccCCcEEEEeccCcCCCchHHHHHHHH
Confidence 47777777775 433 3455555542 5888888766531 2345567899998876221111
Q ss_pred -----HHHHHHHhc--CCcEEEEec-cC
Q 021895 195 -----EEELLELVQ--NTDFLVLAR-YM 214 (306)
Q Consensus 195 -----e~e~~~~v~--~~D~vVlA~-ym 214 (306)
.-+..++++ +||+|+.-| |.
T Consensus 75 ~~~~~~~~~~~i~~~~kPdvvi~~Ggy~ 102 (352)
T PRK12446 75 LVMKGVMDAYVRIRKLKPDVIFSKGGFV 102 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEecCchh
Confidence 012334444 899999766 54
No 365
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=35.22 E-value=1.5e+02 Score=27.58 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=56.1
Q ss_pred ceEEEEEeCC-cchHHHHHHhhh-cCCC-CeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 129 YKVAVLASKQ-EHCLVDFLYGWQ-EGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 129 ~riavl~S~~-g~~L~~ll~~~~-~g~l-~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
+||+|++.|. |. ++..++. .|.+ +.+| +++|+. +......++++.|+. ... . .+ +.+.++
T Consensus 4 mkI~~IG~G~mG~---aia~~l~~~g~~~~~~v--~v~~r~--~~~~~~~l~~~~g~~--~~~----~-~~---e~~~~a 66 (279)
T PRK07679 4 QNISFLGAGSIAE---AIIGGLLHANVVKGEQI--TVSNRS--NETRLQELHQKYGVK--GTH----N-KK---ELLTDA 66 (279)
T ss_pred CEEEEECccHHHH---HHHHHHHHCCCCCcceE--EEECCC--CHHHHHHHHHhcCce--EeC----C-HH---HHHhcC
Confidence 5899998886 32 3333332 2322 2444 456652 123445566666753 211 1 12 234588
Q ss_pred cEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHh-HHhhcC--CCeeEeCCCCCCCC
Q 021895 206 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGK-FLRSYG--KDVINIHHGLLPSF 270 (306)
Q Consensus 206 D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~-~l~~~~--~~iINiHpsLLP~f 270 (306)
|+|+++=--+ ...+..- .+.+.+.++.-+-|.-+-+ +.+ +.+..+ .+++-.||....+.
T Consensus 67 DvVilav~p~---~~~~vl~--~l~~~~~~~~liIs~~aGi-~~~~l~~~~~~~~~v~r~mPn~~~~~ 128 (279)
T PRK07679 67 NILFLAMKPK---DVAEALI--PFKEYIHNNQLIISLLAGV-STHSIRNLLQKDVPIIRAMPNTSAAI 128 (279)
T ss_pred CEEEEEeCHH---HHHHHHH--HHHhhcCCCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCCHHHHH
Confidence 9999984333 2222221 2223333333233333333 334 333333 25888888654444
No 366
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=35.16 E-value=1.2e+02 Score=28.48 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=20.7
Q ss_pred ceEEEEEeC-C-c-chHHHHHHhhhcCCCCeEEEEEeeCCCC
Q 021895 129 YKVAVLASK-Q-E-HCLVDFLYGWQEGKLPVEITCVISNHDR 167 (306)
Q Consensus 129 ~riavl~S~-~-g-~~L~~ll~~~~~g~l~~~I~~Visn~~~ 167 (306)
+|||+++-. . | .-++..+ ++| +|+||++=|..+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~---~RG---HeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEAL---KRG---HEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHHHHHHHHH---hCC---CeeEEEEeChHh
Confidence 589888653 3 2 2333333 344 899999988743
No 367
>PRK14421 acylphosphatase; Provisional
Probab=35.02 E-value=1.6e+02 Score=24.23 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..+..++.+ -+|-+.+.|+...+++++..+++|.-.+.|.-|-..
T Consensus 18 GFR~fv~~~A~~lgL~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~v~~~ 77 (99)
T PRK14421 18 GYRAWVARTAEALGLEGWVRNRRD----GSVEALFAGPADAVAEMIARCRRGPSAARVDAVEDE 77 (99)
T ss_pred cchHHHHHHHHHhCCEEEEEECCC----CEEEEEEeCCHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 357777888999998775433222 268888899888999999988876433777766554
No 368
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=35.01 E-value=1.5e+02 Score=25.66 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=25.7
Q ss_pred HHHHHhhhcCCCCeEEEEEeeCCCC-C--C---Ch-hHHHHHHhCCCCEEE
Q 021895 143 VDFLYGWQEGKLPVEITCVISNHDR-G--P---NS-HVIRFLERHGIPYHY 186 (306)
Q Consensus 143 ~~ll~~~~~g~l~~~I~~Visn~~~-~--~---~~-~~~~~A~~~gIp~~~ 186 (306)
.++++.+++| +|.+||.-+|. + + +. ..++.|-.|+||+..
T Consensus 65 ~~i~~~I~~g----~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T 111 (142)
T PRK05234 65 QQIGALIAEG----KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVAT 111 (142)
T ss_pred hhHHHHHHcC----ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEc
Confidence 3455556667 67777765421 1 1 22 567789999999977
No 369
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=34.88 E-value=39 Score=33.09 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=28.6
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEecc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARY 213 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~y 213 (306)
++.=++.|||.+=..-.+.+.-+.+.++++ +||++|+-|-
T Consensus 122 l~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 122 LKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 444578899987655334333367888887 9999999874
No 370
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=34.75 E-value=4.5e+02 Score=27.74 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=77.3
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec--cCCCCeEEEEEEEEeCC-CCCCHHHHHHHHHHHHhhhhcccc
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV--PEKKNVFYSRSEFIFDP-IKWPREQMDEDFFKLSKMFNAMRS 118 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i--d~l~G~FfMrmeVdv~~-~~~~~eeLreaL~~la~elgl~~~ 118 (306)
..++++.-|-+ =....+.|+++|++.++.+..- ++.+ ++.+-.+- .-.....+.++.+.+++.++.. .
T Consensus 86 ~tli~~l~p~~---n~~ll~~l~~k~it~ia~E~vprisraq-----~~d~lssma~iAGy~Avi~Aa~~lgr~~~g~-~ 156 (511)
T TIGR00561 86 KALVSFIWPAQ---NPELMEKLAAKNITVLAMDAVPRISRAQ-----KLDALSSMANIAGYRAIIEAAHEFGRFFTGQ-I 156 (511)
T ss_pred CEEEEEcCccC---CHHHHHHHHHcCCEEEEeecccccccCC-----ccCcchhhHHHHHHHHHHHHHHHhhhhcCCc-e
Confidence 34555555433 3577888999999999988642 2111 11111000 0012344555555555555421 1
Q ss_pred eeeecCCCCCceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC-C----
Q 021895 119 VVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---- 192 (306)
Q Consensus 119 ~~rl~~~~~~~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~-~---- 192 (306)
+ ....-+..|++|++.|.- .....++.+ -| +.|. |+..+ ...++.+++.|..+..++..+ .
T Consensus 157 t--aag~vp~akVlViGaG~iGl~Aa~~ak~--lG---A~V~-v~d~~-----~~rle~a~~lGa~~v~v~~~e~g~~~~ 223 (511)
T TIGR00561 157 T--AAGKVPPAKVLVIGAGVAGLAAIGAANS--LG---AIVR-AFDTR-----PEVKEQVQSMGAEFLELDFKEEGGSGD 223 (511)
T ss_pred e--cCCCCCCCEEEEECCCHHHHHHHHHHHH--CC---CEEE-EEeCC-----HHHHHHHHHcCCeEEeccccccccccc
Confidence 1 223345679999998762 222223322 23 4543 33332 235888999887765555211 0
Q ss_pred ------ChH------HHHHHHhcCCcEEEEec
Q 021895 193 ------ERE------EELLELVQNTDFLVLAR 212 (306)
Q Consensus 193 ------~~e------~e~~~~v~~~D~vVlA~ 212 (306)
..| +.+.++++++|+++.+-
T Consensus 224 gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Ta 255 (511)
T TIGR00561 224 GYAKVMSEEFIAAEMELFAAQAKEVDIIITTA 255 (511)
T ss_pred cceeecCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 011 11334455899998875
No 371
>PRK14448 acylphosphatase; Provisional
Probab=34.71 E-value=1.7e+02 Score=23.31 Aligned_cols=60 Identities=17% Similarity=0.059 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..+.-++ .+ -.|-+.+.|....++++++.+++|.-.+.|.-|-..
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~--~d--G~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~~ 75 (90)
T PRK14448 16 GFRYFTWQEATKIGIKGYVKNR--PD--GSVEVVAVGSDAQIAAFRDWLQHGPPTAVVCNVIEQ 75 (90)
T ss_pred chHHHHHHHHHHhCCEEEEEEC--CC--CCEEEEEEeCHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 4688888899999987754322 22 357888888888899999999877433777766543
No 372
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=34.67 E-value=2.5e+02 Score=23.06 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=37.9
Q ss_pred EEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCC--hhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEe
Q 021895 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (306)
Q Consensus 134 l~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~--~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA 211 (306)
++||...++. +++.|+ +.+||--.|-+++ ..+..+|+.++||+..+.. .+|+-..+-+....++|
T Consensus 18 lv~G~~~v~~----aik~gk----~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t-----~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 18 LLEGYNKCEE----AIKKKK----VYLIIISNDISENSKNKFKNYCNKYNIPYIEGYS-----KEELGNAIGRDEIKILG 84 (104)
T ss_pred eeecHHHHHH----HHHcCC----ceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecC-----HHHHHHHhCCCCeEEEE
Confidence 6777754544 445563 4455544443332 3567778999999987632 24566666655455544
No 373
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.66 E-value=1.2e+02 Score=29.48 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=35.7
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++.+.++ ++|=|.+- .|.|-.- -.-++.+.++|+-
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq---lPlp~~i---~~~~i~~~I~p~K 117 (284)
T PRK14179 54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQ---LPLPKHI---NEEKILLAIDPKK 117 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEc---CCCCCCC---CHHHHHhccCccc
Confidence 578999999998887656666777877775 34555542 4655221 1123455555544
No 374
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=34.46 E-value=2.2e+02 Score=27.66 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=29.4
Q ss_pred EEEeC-CcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 021895 133 VLASK-QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 133 vl~S~-~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
||.-+ +++.+..|..+++.|+ ...|.++ =+++........+...++|||+.+++.
T Consensus 124 ILT~~~S~tv~~~l~~A~~~~k-~~~V~v~-EsrP~~~G~~~a~~L~~~GI~vtlI~D 179 (310)
T PRK08535 124 IMTHCNSSAALSVIKTAHEQGK-DIEVIAT-ETRPRNQGHITAKELAEYGIPVTLIVD 179 (310)
T ss_pred EEEeCCcHHHHHHHHHHHHCCC-eEEEEEe-cCCchhhHHHHHHHHHHCCCCEEEEeh
Confidence 44444 4566666666666665 2444322 233221122233455688999999873
No 375
>PRK14434 acylphosphatase; Provisional
Probab=34.35 E-value=1.6e+02 Score=23.61 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhh-cccceeeecCCCCCceEEEEEeCCc-chHHHHHHhhhcCCCC-eEEEEEeeC
Q 021895 102 MDEDFFKLSKMFN-AMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLP-VEITCVISN 164 (306)
Q Consensus 102 LreaL~~la~elg-l~~~~~rl~~~~~~~riavl~S~~g-~~L~~ll~~~~~g~l~-~~I~~Visn 164 (306)
+|--...+|.++| +..|..+..| - +|-+.+.|+. ..++.++..+++|.-| +.|.-|...
T Consensus 17 FR~fv~~~A~~lg~l~G~V~N~~d--G--sVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v~~~ 78 (92)
T PRK14434 17 FRYSVYSLALEIGDIYGRVWNNDD--G--TVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYVDVT 78 (92)
T ss_pred EhHHHHHHHHHcCCcEEEEEECCC--C--CEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEEEEE
Confidence 4667777889999 8776433322 2 5788888876 5899999999887643 788776654
No 376
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.33 E-value=1.4e+02 Score=26.90 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=38.6
Q ss_pred chHHHHHHhhhcCCCCeEEEEEeeCCC----CCCChhHHHHHHhCCCCEEEeCC-CCCChHHHHHHHhc-C-----CcEE
Q 021895 140 HCLVDFLYGWQEGKLPVEITCVISNHD----RGPNSHVIRFLERHGIPYHYLCA-KENEREEELLELVQ-N-----TDFL 208 (306)
Q Consensus 140 ~~L~~ll~~~~~g~l~~~I~~Visn~~----~~~~~~~~~~A~~~gIp~~~~~~-k~~~~e~e~~~~v~-~-----~D~v 208 (306)
+.+.+.++.+++-- +.+=++|+||.. +.....+..+++..|||+..... |-.. -+++++.+. + ++=+
T Consensus 62 ~~~~~~~~~l~~~~-~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~-~~~i~~~~~~~~~~~~p~ei 139 (168)
T PF09419_consen 62 PEYAEWLNELKKQF-GKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGC-FREILKYFKCQKVVTSPSEI 139 (168)
T ss_pred HHHHHHHHHHHHHC-CCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCcc-HHHHHHHHhhccCCCCchhE
Confidence 34555555554321 222357899962 11124577788999999865543 3322 235666654 2 5545
Q ss_pred EEec
Q 021895 209 VLAR 212 (306)
Q Consensus 209 VlA~ 212 (306)
|+.|
T Consensus 140 avIG 143 (168)
T PF09419_consen 140 AVIG 143 (168)
T ss_pred EEEc
Confidence 5555
No 377
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.22 E-value=1.1e+02 Score=29.79 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=36.0
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc--C----CcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ--N----TDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~----~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++++.++ | +|=+.+- .|+|-. ++. ++.+.++|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvq---lPlP~~----id~~~i~~~I~p~K 117 (284)
T PRK14193 54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQ---LPLPKH----LDENAVLERIDPAK 117 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe---CCCCCC----CCHHHHHhcCCccc
Confidence 678999999998877555556777877775 3 3444442 466622 222 4566666654
No 378
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=34.15 E-value=1.6e+02 Score=29.72 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=29.0
Q ss_pred CCcchHHHHHHhhhcCCCCeEEEEEee-CCCCCCChhH-HHHHHhCCCCEEEeC
Q 021895 137 KQEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHV-IRFLERHGIPYHYLC 188 (306)
Q Consensus 137 ~~g~~L~~ll~~~~~g~l~~~I~~Vis-n~~~~~~~~~-~~~A~~~gIp~~~~~ 188 (306)
+.|+-|.-|..++..|+ .+..+++ ++|....+.. .....++|||+.+++
T Consensus 176 ~~gTal~vi~~A~~~gk---~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~ 226 (356)
T PRK08334 176 HLGTVGAVLRVMHKDGT---LKLLWVDETRPVLQGARLSAWEYHYDGIPLKLIS 226 (356)
T ss_pred ccchHHHHHHHHHHcCC---eEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEe
Confidence 34677877777777774 3443444 4432212222 123578899999987
No 379
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=34.07 E-value=1.5e+02 Score=24.03 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeCCCCCCHHHHHHHH
Q 021895 52 EVGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDPIKWPREQMDEDF 106 (306)
Q Consensus 52 RpGIVAaVS~~LAe~G~NIlD~sQ~id---------~l~G~FfMrmeVdv~~~~~~~eeLreaL 106 (306)
...++..+.+.|.+.|+.|.+++.... ...|.|+ .+.|+.++. ...+|.+.|
T Consensus 19 ~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~-~~~f~~~~~--~i~el~~~l 79 (108)
T PRK00453 19 VKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYV-LLNFEAPPA--AIAELERLF 79 (108)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEE-EEEEEeCHH--HHHHHHHHh
Confidence 567888999999999999999886531 2356665 566665432 344444433
No 380
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=33.37 E-value=3.9e+02 Score=24.61 Aligned_cols=90 Identities=13% Similarity=0.040 Sum_probs=53.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC--CC--eEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK--KN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l--~G--~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
..-+.-++|+...+...+++.++.+.++-.+......... .+ .++.|+.- +....-.++.++.++++
T Consensus 89 ~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~~~~~~~ls~~~~~~~~fr~~p-------~~~~~~~a~~~~~~~~~-- 159 (348)
T cd06350 89 QPKVVAVIGPGSSSVSMAVAELLGLFKIPQISYGATSPLLSDKLQFPSFFRTVP-------SDTSQALAIVALLKHFG-- 159 (348)
T ss_pred CCceEEEECCCccHHHHHHHHHHhcCcCceecccCCChhhccccccCCeeEecC-------CcHHHHHHHHHHHHHCC--
Confidence 3567788999999999999999988888777644432221 12 23334421 12344555555555543
Q ss_pred cceeeecCCCCCceEEEEEeCCc---chHHHHHHhhh
Q 021895 117 RSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQ 150 (306)
Q Consensus 117 ~~~~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~ 150 (306)
..||+++.+... ...+++.+.++
T Consensus 160 -----------~~~v~~l~~~~~~g~~~~~~~~~~~~ 185 (348)
T cd06350 160 -----------WTWVGLVYSDDDYGRSGLSDLEEELE 185 (348)
T ss_pred -----------CeEEEEEEecchhHHHHHHHHHHHHH
Confidence 237898887653 23344444443
No 381
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=33.33 E-value=63 Score=31.66 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=29.2
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYM 214 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym 214 (306)
+..=++.|||++=..-.+.+.-+.+.++++ +||++|+-|--
T Consensus 121 l~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 121 LKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 344578899987655344333467888887 99999998753
No 382
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.33 E-value=1.4e+02 Score=29.06 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=35.4
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc--C----CcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ--N----TDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~----~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+..+...++..++++.+.++ | .|=|.+- .|.|-. ++. ++.+.++|+-
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq---~Plp~~----i~~~~i~~~I~p~K 117 (285)
T PRK14189 54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQ---LPLPKH----IDSHKVIEAIAPEK 117 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEe---CCCCCC----CCHHHHHhhcCccc
Confidence 678999999998887555556777777775 3 3444442 455522 222 4556665544
No 383
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=33.15 E-value=69 Score=29.03 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=38.2
Q ss_pred CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcE
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~ 207 (306)
.++|+|++.|+---.+++ .+++. ..+ .+|..+ +++.-.+.|++.|..+.. +.+.++++|+
T Consensus 4 ~k~IAViGyGsQG~a~Al--NLrDS--G~~--V~Vglr---~~s~s~~~A~~~Gf~v~~-----------~~eAv~~aDv 63 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHAL--NLRDS--GVN--VIVGLR---EGSASWEKAKADGFEVMS-----------VAEAVKKADV 63 (165)
T ss_dssp TSEEEEES-SHHHHHHHH--HHHHC--C-E--EEEEE----TTCHHHHHHHHTT-ECCE-----------HHHHHHC-SE
T ss_pred CCEEEEECCChHHHHHHH--HHHhC--CCC--EEEEec---CCCcCHHHHHHCCCeecc-----------HHHHHhhCCE
Confidence 468999999863222222 11222 234 466666 345578899999975533 2234557777
Q ss_pred EEEeccCCCCcCchhhh
Q 021895 208 LVLARYMQPVPLQKEAY 224 (306)
Q Consensus 208 vVlA~ym~~~~~~~~~~ 224 (306)
|++. -|=..|.+-|
T Consensus 64 V~~L---~PD~~q~~vy 77 (165)
T PF07991_consen 64 VMLL---LPDEVQPEVY 77 (165)
T ss_dssp EEE----S-HHHHHHHH
T ss_pred EEEe---CChHHHHHHH
Confidence 7765 3444555555
No 384
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=32.84 E-value=3e+02 Score=25.70 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=43.6
Q ss_pred CceEEEEEeCCc-chH-HHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 128 KYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 128 ~~riavl~S~~g-~~L-~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
.++|.|...|.+ .++ ..+++++.+-..+.++..|+..... ....+.++++.+. .++... .-+++.+++..+
T Consensus 170 ~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~-~~~~l~~~~~~~~-~i~~~~-----~~~~m~~lm~~a 242 (279)
T TIGR03590 170 LRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNP-NLDELKKFAKEYP-NIILFI-----DVENMAELMNEA 242 (279)
T ss_pred cCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCc-CHHHHHHHHHhCC-CEEEEe-----CHHHHHHHHHHC
Confidence 356777666665 453 3566665432224677777654321 1123445555443 233321 234688888899
Q ss_pred cEEEEecc
Q 021895 206 DFLVLARY 213 (306)
Q Consensus 206 D~vVlA~y 213 (306)
|++|.++=
T Consensus 243 Dl~Is~~G 250 (279)
T TIGR03590 243 DLAIGAAG 250 (279)
T ss_pred CEEEECCc
Confidence 99999754
No 385
>PRK11890 phosphate acetyltransferase; Provisional
Probab=32.78 E-value=1.3e+02 Score=29.67 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=52.2
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCC---EEEeCCCCCChH--HHHHHH
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP---YHYLCAKENERE--EELLEL 201 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp---~~~~~~k~~~~e--~e~~~~ 201 (306)
+++||+|.+-.+.+.|++....+++|- ++.++ |.++ ....+.|++.|+- +.+++... ..+ ++-..+
T Consensus 21 ~~~~vava~a~D~~vl~Aa~~a~~~gl--~~piL-vG~~-----~~I~~~a~~~g~dl~~~eII~~~~-~~~~a~~av~m 91 (312)
T PRK11890 21 PPLPTAVAHPCDESSLRGAVEAAQLGL--ITPIL-VGPR-----ARIEAVAAECGLDLSGYEIVDAPH-SHAAAAKAVEL 91 (312)
T ss_pred CCceEEEECCCCHHHHHHHHHHHHcCC--EEEEE-ECCH-----HHHHHHHHHcCCCcCCCEEECCCC-hHHHHHHHHHH
Confidence 466999999988899999988888873 45444 3554 3578899999975 33444221 112 334445
Q ss_pred hc--CCcEEEEeccCC
Q 021895 202 VQ--NTDFLVLARYMQ 215 (306)
Q Consensus 202 v~--~~D~vVlA~ym~ 215 (306)
+. ++|+++ .|..+
T Consensus 92 V~~G~AD~lm-kG~i~ 106 (312)
T PRK11890 92 VREGEAEALM-KGSLH 106 (312)
T ss_pred HHcCCCCEEe-cCCcc
Confidence 55 899654 58776
No 386
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.57 E-value=1e+02 Score=29.88 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=16.4
Q ss_pred CCCceEEEEEeCC-cchHHHHHH
Q 021895 126 DPKYKVAVLASKQ-EHCLVDFLY 147 (306)
Q Consensus 126 ~~~~riavl~S~~-g~~L~~ll~ 147 (306)
.+++||+|+++|. |+.+...|.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La 27 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICA 27 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHH
Confidence 4567999999998 566666654
No 387
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=32.45 E-value=3.3e+02 Score=26.59 Aligned_cols=94 Identities=6% Similarity=-0.077 Sum_probs=54.2
Q ss_pred ccEEEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccce
Q 021895 41 THGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (306)
Q Consensus 41 ~k~ILTViGp-DRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~ 119 (306)
.+..+.+.|. -.+..++.|.+.+++.+.||... .. ..+...++ ..+|+.++..++.+++++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~~ 100 (322)
T PRK11133 36 GRSGWLLYGRGLDKQRLTDFQRKLGAAMVIVAAW-CV----EDYQVVRL----------AGSLTPRATRLAHELGLDVAP 100 (322)
T ss_pred ccceEEEECCCCCHHHHHHHHHHHhhccceeeee-ec----cccceeec----------hhhHHHHHHHHHhhcCCcEEE
Confidence 3445566665 46778999999999999888331 11 11111121 146999999999999875432
Q ss_pred eeecCCCCCceEEEEEeC----CcchHHHHHHhh
Q 021895 120 VRVPDIDPKYKVAVLASK----QEHCLVDFLYGW 149 (306)
Q Consensus 120 ~rl~~~~~~~riavl~S~----~g~~L~~ll~~~ 149 (306)
.+-...-+++|+++|==. +..|...+.+..
T Consensus 101 ~~~~~~~~~~~LvvfDmDGTLI~~e~i~eia~~~ 134 (322)
T PRK11133 101 LGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLA 134 (322)
T ss_pred ecCcccccCCCEEEEECCCCCcchHHHHHHHHHh
Confidence 111112234567666211 124566666544
No 388
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.44 E-value=1.3e+02 Score=29.30 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=23.5
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.|++.||.+......++..++++.+.++
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~ 83 (284)
T PRK14190 54 KKAAEKVGIYSELYEFPADITEEELLALID 83 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 678999999998887555556777877775
No 389
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=32.31 E-value=58 Score=35.94 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=73.0
Q ss_pred HhcCCeEeEeeeeccCCC--CeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeecCCCCCceE----EEEEeC
Q 021895 64 ASRGGNILAADVFVPEKK--NVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKV----AVLASK 137 (306)
Q Consensus 64 Ae~G~NIlD~sQ~id~l~--G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~~~~~~~ri----avl~S~ 137 (306)
++.|+.|.+-+++....+ ++|-|.= .+.+..-+...-.+. +.+-+++. ...++...|..|+ .|+.+.
T Consensus 337 aKE~v~i~~e~~t~AsIT~QnfFr~Y~--kLsGMTGTa~t~~~E---f~~iY~l~--Vv~IPtnkp~~R~d~~d~iy~t~ 409 (764)
T PRK12326 337 AKEGLETTETGEVLDTITVQALIGRYP--TVCGMTGTAVAAGEQ---LRQFYDLG--VSVIPPNKPNIREDEADRVYATA 409 (764)
T ss_pred HHcCCCCCCCceeeehhhHHHHHHhcc--hheeecCCChhHHHH---HHHHhCCc--EEECCCCCCceeecCCCceEeCH
Confidence 456777777666643322 2233222 222222223333333 44456654 3567766666555 566665
Q ss_pred CcchHHHHHHh----hhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEecc
Q 021895 138 QEHCLVDFLYG----WQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 213 (306)
Q Consensus 138 ~g~~L~~ll~~----~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA~y 213 (306)
.. -..++++. ...| ..++|.+.--. ....+-+...++|||..++.+|...+|+++.+.--++--|-+|-=
T Consensus 410 ~~-k~~Aii~ei~~~~~~G----rPVLVgt~sI~-~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~gaVTIATN 483 (764)
T PRK12326 410 AE-KNDAIVEHIAEVHETG----QPVLVGTHDVA-ESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYGAVTVSTQ 483 (764)
T ss_pred HH-HHHHHHHHHHHHHHcC----CCEEEEeCCHH-HHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCCcEEEEec
Confidence 43 34444443 3455 34555554211 122456677889999999998876777777655434444554433
Q ss_pred C
Q 021895 214 M 214 (306)
Q Consensus 214 m 214 (306)
|
T Consensus 484 M 484 (764)
T PRK12326 484 M 484 (764)
T ss_pred C
Confidence 3
No 390
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=32.03 E-value=2.5e+02 Score=21.92 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=35.7
Q ss_pred EEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEE
Q 021895 132 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLV 209 (306)
Q Consensus 132 avl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vV 209 (306)
.|++.+. --..+++...++. .+++.|=.|+ ...+.+++.|+++.+-+ ..+++.++... ++|.+|
T Consensus 2 vI~G~g~--~~~~i~~~L~~~~--~~vvvid~d~------~~~~~~~~~~~~~i~gd----~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 2 VIIGYGR--IGREIAEQLKEGG--IDVVVIDRDP------ERVEELREEGVEVIYGD----ATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEES-SH--HHHHHHHHHHHTT--SEEEEEESSH------HHHHHHHHTTSEEEES-----TTSHHHHHHTTGGCESEEE
T ss_pred EEEcCCH--HHHHHHHHHHhCC--CEEEEEECCc------HHHHHHHhccccccccc----chhhhHHhhcCccccCEEE
Confidence 3444443 3344444444442 3565555544 34777888898877743 22345555544 788777
Q ss_pred Ee
Q 021895 210 LA 211 (306)
Q Consensus 210 lA 211 (306)
++
T Consensus 68 ~~ 69 (116)
T PF02254_consen 68 IL 69 (116)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 391
>PRK14432 acylphosphatase; Provisional
Probab=32.01 E-value=1.8e+02 Score=23.49 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEe-CCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS-KQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 101 eLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S-~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
-+|.-...+|.++|+..|..++.| - .|-+.+. |+...++++++.++.|.-.+.|.-|...
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~d--G--~Vei~~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~~ 76 (93)
T PRK14432 16 GFRFFTEQIANNMKLKGFVKNLND--G--RVEIVAFFNTKEQMKKFEKLLKNGNKYSNIENIEKK 76 (93)
T ss_pred eehHHHHHHHHHhCCEEEEEECCC--C--CEEEEEEECCHHHHHHHHHHHHhCCCccEEEEEEEE
Confidence 357778888999998776543333 2 5777786 8888999999998888323777666543
No 392
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.98 E-value=76 Score=24.88 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChH---HHHHHHhcCCcEEEEecc
Q 021895 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE---EELLELVQNTDFLVLARY 213 (306)
Q Consensus 142 L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e---~e~~~~v~~~D~vVlA~y 213 (306)
+.+++.. . ..+++.|.+... ........|-++|+++.+= .+..... +++.++.++....|..||
T Consensus 54 ~~~ll~~---~--~~D~V~I~tp~~--~h~~~~~~~l~~g~~v~~E-KP~~~~~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 54 LEELLAD---E--DVDAVIIATPPS--SHAEIAKKALEAGKHVLVE-KPLALTLEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHH---T--TESEEEEESSGG--GHHHHHHHHHHTTSEEEEE-SSSSSSHHHHHHHHHHHHHHTSCEEEE-
T ss_pred HHHHHHh---h--cCCEEEEecCCc--chHHHHHHHHHcCCEEEEE-cCCcCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 7788864 2 366776666543 3456778888999955442 2222222 355555555555555554
No 393
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=31.97 E-value=1.2e+02 Score=28.14 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=42.1
Q ss_pred cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC-C--ChH-HHHHHHhcCCcEEEEeccC
Q 021895 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--ERE-EELLELVQNTDFLVLARYM 214 (306)
Q Consensus 139 g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~-~--~~e-~e~~~~v~~~D~vVlA~ym 214 (306)
.+.+.++|.. ++ .+++.|.+-++ ........|-++|.+ ++|.|- . ..| +++.++.++..+.+..+|+
T Consensus 56 ~~~~~~ll~~---~~--iD~V~Iatp~~--~H~e~~~~AL~aGkh--Vl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~ 126 (342)
T COG0673 56 YTDLEELLAD---PD--IDAVYIATPNA--LHAELALAALEAGKH--VLCEKPLALTLEEAEELVELARKAGVKLMVGFN 126 (342)
T ss_pred cCCHHHHhcC---CC--CCEEEEcCCCh--hhHHHHHHHHhcCCE--EEEcCCCCCCHHHHHHHHHHHHHcCCceeeehh
Confidence 3567888863 32 45554444322 345667888999984 455442 2 222 4566666677999999999
Q ss_pred C
Q 021895 215 Q 215 (306)
Q Consensus 215 ~ 215 (306)
+
T Consensus 127 ~ 127 (342)
T COG0673 127 R 127 (342)
T ss_pred h
Confidence 9
No 394
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=31.96 E-value=3.2e+02 Score=24.63 Aligned_cols=39 Identities=5% Similarity=-0.051 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhcccc-eeeecCCCCCceEEEEEeCC
Q 021895 100 EQMDEDFFKLSKMFNAMRS-VVRVPDIDPKYKVAVLASKQ 138 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~-~~rl~~~~~~~riavl~S~~ 138 (306)
++-++...+.++++|=.-+ ..+-....+..+|++++...
T Consensus 6 ~~Tr~rV~~~a~elgY~pn~~a~~l~~~~~~~ig~v~~~~ 45 (309)
T PRK11041 6 QATRQRVEQAVLEVGYSPQSLGRNLKRNESRTILVIVPDI 45 (309)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCcEEEEEeCCC
Confidence 4567777788888872111 01111123445788777653
No 395
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=31.77 E-value=1e+02 Score=31.67 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=35.1
Q ss_pred CceEEEEEeCCcchHHHHH------Hhhh-cCC-CCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 021895 128 KYKVAVLASKQEHCLVDFL------YGWQ-EGK-LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll------~~~~-~g~-l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
+.=..+.+|++|++++-+. +.++ .|. ....++ +||+++. ..+.++|+++|++++.++.
T Consensus 132 ~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~v-aiTd~~~---g~L~~~A~~~g~~~f~ip~ 197 (446)
T PRK00973 132 EKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLV-FTTDPEK---GKLKKIAEKEGYRTLEIPE 197 (446)
T ss_pred ccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEE-EEcCCCc---cchHHHHHHcCCcEEeeCC
Confidence 3347789999996665443 1111 121 123444 5566532 2478999999999888763
No 396
>PRK07714 hypothetical protein; Provisional
Probab=31.69 E-value=1.7e+02 Score=23.58 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=32.7
Q ss_pred EEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 134 l~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
+++|...++ ++++.|+ +.++.+-++-+..--..+..+|+.++||+.++.. .+|+-..+-
T Consensus 19 ~v~G~~~v~----~al~~g~--~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~s-----k~eLG~a~G 77 (100)
T PRK07714 19 VISGEELVL----KEVRSGK--AKLVLLSEDASVNTTKKITDKCTYYNVPMRKVEN-----RQQLGHAIG 77 (100)
T ss_pred eeecHHHHH----HHHHhCC--ceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCC-----HHHHHHHhC
Confidence 556654444 4445563 3444343433211124677788999999988643 245666665
No 397
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.59 E-value=1.6e+02 Score=28.77 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++++.++ ++|=|.+- .|+|-. ++. ++.+.++|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvq---lPLP~~----id~~~i~~~I~p~K 117 (288)
T PRK14171 54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQ---LPLPSS----IDKNKILSAVSPSK 117 (288)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEe---CCCCCC----CCHHHHHhccCccc
Confidence 678999999998887655566777877775 24455542 466532 222 4566666654
No 398
>PRK07742 phosphate butyryltransferase; Validated
Probab=31.41 E-value=2.9e+02 Score=26.57 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=50.4
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCC----CEEEeCCCCCChH--HHHHH
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI----PYHYLCAKENERE--EELLE 200 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gI----p~~~~~~k~~~~e--~e~~~ 200 (306)
.++||+|-...+.+.|++...++++| .+++++ |.++ ....+.++++|+ .+.+++..+. .+ ..-.+
T Consensus 14 ~~~ri~~~~~~d~~vl~Aa~~a~~e~--~~~~iL-vG~~-----~~I~~~~~~~~l~~~~~~~Ii~~~~~-~~s~~~a~~ 84 (299)
T PRK07742 14 PKKTVAVAVAEDEEVIEAVAKAIELQ--LARFRL-YGNQ-----EKIMGMLQEHGLQTSEHIEIIHAQSS-AEAAELAVK 84 (299)
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHHcC--CceEEE-ECCH-----HHHHHHHHHCCCCCCCCcEEECCCCH-HHHHHHHHH
Confidence 35689988876778999998888887 366655 3444 246677888887 2334432211 11 22355
Q ss_pred Hhc--CCcEEEEecc
Q 021895 201 LVQ--NTDFLVLARY 213 (306)
Q Consensus 201 ~v~--~~D~vVlA~y 213 (306)
+++ ++|.+|-++-
T Consensus 85 lV~~G~aD~lvsG~~ 99 (299)
T PRK07742 85 AVRNGEADVLMKGNV 99 (299)
T ss_pred HHHCCCCCEEEECCc
Confidence 666 8999997665
No 399
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.36 E-value=1.3e+02 Score=29.17 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=35.3
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++++.++ ++|=+.+- .|.|- -++. ++.+.++|+-
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq---~PlP~----~i~~~~i~~~I~p~K 116 (281)
T PRK14183 53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQ---LPLPK----HIDTTKILEAIDPKK 116 (281)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEe---CCCCC----CCCHHHHHhccCchh
Confidence 678999999998877555555677777775 34555552 46661 2222 3555555544
No 400
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=31.35 E-value=1.1e+02 Score=31.25 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=41.3
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCC-CeEEEEEeeCCCCCCChh-HHHHHHhCCCCEEEeC-CCCCChHHHHHHHh-
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSH-VIRFLERHGIPYHYLC-AKENEREEELLELV- 202 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l-~~~I~~Visn~~~~~~~~-~~~~A~~~gIp~~~~~-~k~~~~e~e~~~~v- 202 (306)
++.||+|+.||.+ |+.-. ..+ |.+|. | +|++ +..++++.|....... .+. +++++.+.+
T Consensus 175 rkprV~IisTGdE-----Lv~~~--~~l~~gqI~----d----sN~~~l~a~l~~~G~e~~~~giv~D--d~~~l~~~i~ 237 (404)
T COG0303 175 RKPRVAIISTGDE-----LVEPG--QPLEPGQIY----D----SNSYMLAALLERAGGEVVDLGIVPD--DPEALREAIE 237 (404)
T ss_pred cCCEEEEEecCcc-----ccCCC--CCCCCCeEE----e----cCHHHHHHHHHHcCCceeeccccCC--CHHHHHHHHH
Confidence 5789999999984 23221 111 34442 1 3444 4556788887655554 222 233444444
Q ss_pred ---cCCcEEEEeccCC
Q 021895 203 ---QNTDFLVLARYMQ 215 (306)
Q Consensus 203 ---~~~D~vVlA~ym~ 215 (306)
.++|+||..|=--
T Consensus 238 ~a~~~~DviItsGG~S 253 (404)
T COG0303 238 KALSEADVIITSGGVS 253 (404)
T ss_pred HhhhcCCEEEEeCCcc
Confidence 4799999987543
No 401
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=31.32 E-value=76 Score=26.33 Aligned_cols=43 Identities=30% Similarity=0.505 Sum_probs=27.4
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPL 219 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~ 219 (306)
.+.|++.||.+.......+..++++.+.+. ++|=|.+- +|.|-
T Consensus 51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq---~PLP~ 99 (117)
T PF00763_consen 51 QKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQ---LPLPK 99 (117)
T ss_dssp HHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEE---SSSST
T ss_pred HHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEc---CCCCC
Confidence 678999999998877444555677777775 45655553 45553
No 402
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.15 E-value=1.7e+02 Score=26.15 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=42.0
Q ss_pred EEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee------ccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhh
Q 021895 43 GIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF------VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (306)
Q Consensus 43 ~ILTViGpDR-pGIVAaVS~~LAe~G~NIlD~sQ~------id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elg 114 (306)
-++.|+|.-. .||=.+++..|++.|.+++-..-. .....+.-.-.+.+|+. +.+++++.++++.+++|
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~----~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVA----SDESIERAFATIKERVG 82 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCC----CHHHHHHHHHHHHHHhC
Confidence 3566778876 789999999999999998754210 01111110112344443 46777877777766654
No 403
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.13 E-value=1.3e+02 Score=29.31 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=36.4
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc--C----CcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ--N----TDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~----~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+..+...++..++++.+.++ | +|=|.+- .|+|- -++. ++.+.++|.-
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq---~Plp~----~id~~~i~~~I~p~K 116 (295)
T PRK14174 53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQ---QPLPK----QIDEFAVTLAIDPAK 116 (295)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe---CCCCC----CCCHHHHHhcCCccc
Confidence 678999999999888655556777877776 3 3444442 46662 2232 3556666654
No 404
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=30.94 E-value=96 Score=32.86 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=40.4
Q ss_pred CCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhH-HHHHHhCCCCEEEeC-CCCCCh--HHHHHHH
Q 021895 126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHV-IRFLERHGIPYHYLC-AKENER--EEELLEL 201 (306)
Q Consensus 126 ~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~-~~~A~~~gIp~~~~~-~k~~~~--e~e~~~~ 201 (306)
-++.||+|+.+|++ |..- .+.--+.+|. + .|++. ..++++.|..+.... -+++.. ++.+.+.
T Consensus 177 ~~rprV~IisTGdE-----Lv~p-g~~l~~G~I~----d----sNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~a 242 (546)
T PRK14497 177 YEKPKIYLIATGDE-----LVEP-GNSLSPGKIY----E----SNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRA 242 (546)
T ss_pred ccCCEEEEEEcCCc-----ccCC-CCCCCCCcEE----E----hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHh
Confidence 35679999999974 2221 1110123432 1 34544 445888997655443 222211 1233334
Q ss_pred hcCCcEEEEeccCC
Q 021895 202 VQNTDFLVLARYMQ 215 (306)
Q Consensus 202 v~~~D~vVlA~ym~ 215 (306)
+.++|+|++.|=.-
T Consensus 243 l~~~DlVIttGGtS 256 (546)
T PRK14497 243 ISVADVLILTGGTS 256 (546)
T ss_pred hhcCCEEEEcCCcc
Confidence 44799999987543
No 405
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=30.77 E-value=3.8e+02 Score=26.06 Aligned_cols=119 Identities=23% Similarity=0.244 Sum_probs=67.9
Q ss_pred cchHHHHHHhh----hcCCCC-eEEEEEeeCC--CCCCChhHHHHHHhCCCCEEEeCCCCCCh--------HHHHHHHhc
Q 021895 139 EHCLVDFLYGW----QEGKLP-VEITCVISNH--DRGPNSHVIRFLERHGIPYHYLCAKENER--------EEELLELVQ 203 (306)
Q Consensus 139 g~~L~~ll~~~----~~g~l~-~~I~~Visn~--~~~~~~~~~~~A~~~gIp~~~~~~k~~~~--------e~e~~~~v~ 203 (306)
.|..|+|+|.. ..|.+. ..|+. |..- .+ -....+..+...|+-+.+++.++-.. ...+.+.++
T Consensus 135 ~HPtQ~LaDl~Ti~e~~G~l~g~kv~~-vGD~~~~~-v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~ 212 (305)
T PRK00856 135 QHPTQALLDLLTIREEFGRLEGLKVAI-VGDIKHSR-VARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIE 212 (305)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCEEEE-ECCCCCCc-HHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhC
Confidence 47777776542 236564 34443 3221 11 11235667888898887777543221 133456777
Q ss_pred CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhcCCCeeEeCCCCCCCCCCC
Q 021895 204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (306)
Q Consensus 204 ~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~~~~iINiHpsLLP~f~Ga 273 (306)
++|+|..-+| |+|++-+ +..++. ...+..-.+..++++.-+.+++=.|| ||++||-
T Consensus 213 ~aDvvyt~~~------q~e~~~~-~~~~~~-----~~~~~~y~v~~~ll~~a~~~~~~mHc--LPa~Rg~ 268 (305)
T PRK00856 213 DADVVMMLRV------QKERMDG-GLLPSY-----EEYKRSYGLTAERLALAKPDAIVMHP--GPVNRGV 268 (305)
T ss_pred CCCEEEECCc------ccccccc-cchHHH-----HHHhccCccCHHHHhhcCCCCEEECC--CCCCCCC
Confidence 9999988765 3333211 000000 01112336889999888778999998 8999984
No 406
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=30.74 E-value=67 Score=24.71 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=34.3
Q ss_pred EEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEecc
Q 021895 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 213 (306)
Q Consensus 157 ~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA~y 213 (306)
.+.+||+.... +.+|..-.||+.|||+.+-.. +..+.+++-|.|.+-|+
T Consensus 30 ~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~-------~~~~~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 30 RVAGIVTEEGG-PTSHAAILARELGIPAIVGVG-------DATEAIKDGDWVTLDGN 78 (80)
T ss_dssp TSSEEEESSSS-TTSHHHHHHHHTT-EEEESTT-------THHHHSCTTEEEEEETT
T ss_pred heEEEEEEcCC-ccchHHHHHHHcCCCEEEeec-------cHhhccCCCCEEEEECC
Confidence 47788888743 789999999999999988431 23445566777776553
No 407
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=30.68 E-value=1.3e+02 Score=28.40 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=34.2
Q ss_pred ceEEEEEeCCcchHHHHHHhhh-cCCC-CeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCc
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQ-EGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~-~g~l-~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D 206 (306)
+||+|++.|. -=.++..++. .|.. +.+|. ++|++ .......++++|+- ... ..+ +.++++|
T Consensus 3 ~~IgfIG~G~--MG~aia~~L~~~g~~~~~~I~--v~~r~---~~~~~~l~~~~g~~--~~~-----~~~---e~~~~aD 65 (272)
T PRK12491 3 KQIGFIGCGN--MGIAMIGGMINKNIVSPDQII--CSDLN---VSNLKNASDKYGIT--ITT-----NNN---EVANSAD 65 (272)
T ss_pred CeEEEECccH--HHHHHHHHHHHCCCCCCceEE--EECCC---HHHHHHHHHhcCcE--EeC-----CcH---HHHhhCC
Confidence 4899999886 2223344433 3322 23553 34542 23344445567752 221 112 2345889
Q ss_pred EEEEe
Q 021895 207 FLVLA 211 (306)
Q Consensus 207 ~vVlA 211 (306)
+|++|
T Consensus 66 iIiLa 70 (272)
T PRK12491 66 ILILS 70 (272)
T ss_pred EEEEE
Confidence 99997
No 408
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=30.67 E-value=97 Score=32.60 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=31.6
Q ss_pred CceEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC
Q 021895 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
+.+|.|++.|. |..+...|.. .| .+++++=.|+ ...+.+++.|.++.+=+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g---~~vvvID~d~------~~v~~~~~~g~~v~~GD 450 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA--NK---MRITVLERDI------SAVNLMRKYGYKVYYGD 450 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh--CC---CCEEEEECCH------HHHHHHHhCCCeEEEee
Confidence 46788888887 4555555543 22 4554444443 24667888999988855
No 409
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.62 E-value=1.3e+02 Score=29.38 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=23.2
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.|++.||.+......++..|+++.+.++
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 82 (297)
T PRK14167 53 QRDCEEVGIEAIDVEIDPDAPAEELYDTID 82 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 678999999998877555556777777775
No 410
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.58 E-value=91 Score=30.47 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=47.3
Q ss_pred HHHHHHhc--CCcEEEEeccCCCCcCchhhhhhh----hhhhhh--ccCCCccccccccCCHhHHhhcCCCeeEeCC
Q 021895 196 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGY----KLLESL--SSKGSLTSYFNMILSGKFLRSYGKDVINIHH 264 (306)
Q Consensus 196 ~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~il~~~~l~~~~~~iINiHp 264 (306)
.++.++++ ++|-||++|=..--|..++-+.+- +||.-+ ..+| -|....+++ +|+++++.++|.-|.
T Consensus 58 g~lik~l~~~~v~~vVl~G~v~~Rp~~~~L~~d~~~l~~lp~Iv~~~~~g-DDaLLk~vi--~~~E~~GfKvigahe 131 (279)
T COG3494 58 GKLIKLLKTEGVDRVVLAGGVERRPNFRDLRPDKIGLAVLPKIVEALIRG-DDALLKAVI--DFIESRGFKVIGAHE 131 (279)
T ss_pred HHHHHHHHHcCCcEEEEecccccCcchhhcccccchhhHHHHHHHHhccC-cHHHHHHHH--HHHHhcCcEEecHhh
Confidence 35667776 899999999887678777766655 456655 5566 333344455 689999999999884
No 411
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.54 E-value=1.3e+02 Score=29.16 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=35.6
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc--C----CcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ--N----TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~----~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+..+...++..++++++.++ | .|=+.+ ..|.|-.-+ .-++.+.++|.-
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIiv---q~PlP~~i~---~~~i~~~I~p~K 116 (282)
T PRK14180 53 EKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILV---QLPLPAHIN---KNNVIYSIKPEK 116 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE---cCCCCCCCC---HHHHHhhcCccc
Confidence 677999999998887555556777877776 3 344444 146652111 114566666654
No 412
>PRK07283 hypothetical protein; Provisional
Probab=30.26 E-value=2.4e+02 Score=22.74 Aligned_cols=64 Identities=25% Similarity=0.224 Sum_probs=36.4
Q ss_pred EEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCC--hhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEe
Q 021895 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (306)
Q Consensus 134 l~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~--~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA 211 (306)
+++|...++ ++++.|+ +.+||--.|-.++ ..+.+.|+.++||+..+.. .+|+-..+-+ +..|+|
T Consensus 19 lv~G~~~v~----~aik~gk----~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t-----~~eLG~a~Gk-~~~vva 84 (98)
T PRK07283 19 IISGEELVV----KAIQSGQ----AKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFS-----TLELSAAVGK-PRKVLA 84 (98)
T ss_pred eeEcHHHHH----HHHHcCC----ccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCC-----HHHHHHHhCC-CceEEE
Confidence 667765444 4445563 3344444443222 2456788899999987642 2467666665 345543
No 413
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=30.25 E-value=1.3e+02 Score=27.91 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=33.5
Q ss_pred EEEEeCCcchHHHHH-HhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcC-CcEEE
Q 021895 132 AVLASKQEHCLVDFL-YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN-TDFLV 209 (306)
Q Consensus 132 avl~S~~g~~L~~ll-~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~-~D~vV 209 (306)
.||.-+..+.+..+| .+++.|+ ..+|. |+=+++........+...+.|||+.+++. ..+...+++ +|.|+
T Consensus 110 ~ILT~~~S~~v~~~l~~a~~~~~-~~~V~-v~es~P~~eG~~~a~~L~~~gi~v~~i~d------~~~~~~m~~~vd~Vl 181 (282)
T PF01008_consen 110 TILTHGYSSTVERFLLSAKKKGK-KFRVI-VLESRPYNEGRLMAKELAEAGIPVTLIPD------SAVGYVMPRDVDKVL 181 (282)
T ss_dssp EEEEES--SHHHHHHHHHHHTTE-EEEEE-EE--TTTTHHHTHHHHHHHTT-EEEEE-G------GGHHHHHHCTESEEE
T ss_pred EEEEeCCchHHHHHHHHHHHcCC-eEEEE-EccCCcchhhhhHHHHhhhcceeEEEEec------hHHHHHHHHhCCeeE
Confidence 445555554555544 4455553 24443 33333221111223445667999999862 234455555 77776
Q ss_pred Eec
Q 021895 210 LAR 212 (306)
Q Consensus 210 lA~ 212 (306)
+..
T Consensus 182 iGa 184 (282)
T PF01008_consen 182 IGA 184 (282)
T ss_dssp EE-
T ss_pred Eee
Confidence 653
No 414
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=30.21 E-value=3.4e+02 Score=25.32 Aligned_cols=61 Identities=7% Similarity=-0.053 Sum_probs=40.5
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~ 107 (306)
++.+++.|.+.. +..+.+.+.+++.++.+++........ .+.+++.++. ..+.+++-+.|.
T Consensus 144 ~~~~~i~~~~~~--~~~i~~~l~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~L~ 204 (215)
T PRK09977 144 HYHLQLTLVNGN--VVSMLDWFKQQKIKTDLVSLQENEDHE--VVAIDITLHA-TTSIEDLYRLLK 204 (215)
T ss_pred cEEEEEEEcccc--HHHHHHHHHHcCceEEEEEEEecCCCc--EEEEEEEECC-CCCHHHHHHHHh
Confidence 356667776553 578889999999999999875432222 3567777764 445666655554
No 415
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=30.15 E-value=1.3e+02 Score=23.49 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=42.6
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEe--EeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNIL--AADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIl--D~sQ~id~l~G~Ff-MrmeVdv~~~~~~~eeLreaL~~la~e 112 (306)
.|-+.++|++..+.+++|..++.++-.++. .++.. ..-.|.|. ..+.+.+. +.+++.+-.+++.+-
T Consensus 10 ~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k-~S~~GkY~Svtv~v~v~----s~eq~~~iy~~L~~~ 78 (85)
T PF04359_consen 10 DYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSK-PSSKGKYVSVTVSVTVE----SAEQVDAIYRELKAH 78 (85)
T ss_dssp EEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEEC-CSTTSSEEEEEEEEEES----SHHHHHHHHHHHTTS
T ss_pred cceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEe-cCCCCeEEEEEEEEEEC----CHHHHHHHHHHhccC
Confidence 377899999999999999998888744332 22222 23467765 45555554 467888777776543
No 416
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=30.04 E-value=7.2e+02 Score=27.52 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=28.1
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 021895 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (306)
Q Consensus 43 ~ILTViGp---DRpGIVAaVS~~LAe~G~NIlD~sQ 75 (306)
.+|++.|. +++|+.++|-+.|+++|+||.-+.+
T Consensus 323 ~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~s 358 (861)
T PRK08961 323 VLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISS 358 (861)
T ss_pred EEEEEecCCccccccHHHHHHHHHHHcCCeEEEEEc
Confidence 46777644 6899999999999999999998866
No 417
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=30.01 E-value=87 Score=33.47 Aligned_cols=32 Identities=3% Similarity=0.070 Sum_probs=22.3
Q ss_pred ccEEEEEEcCCcc--chHHHHHHHHHhcCCeEeE
Q 021895 41 THGIHVFHCPDEV--GIVAKLSECIASRGGNILA 72 (306)
Q Consensus 41 ~k~ILTViGpDRp--GIVAaVS~~LAe~G~NIlD 72 (306)
.+.++.+.|.-.- |.+..-....+.++.|++=
T Consensus 141 ~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~ 174 (641)
T PRK12571 141 DGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIV 174 (641)
T ss_pred CCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEE
Confidence 4567777777666 8877767767777777643
No 418
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=29.77 E-value=5.9e+02 Score=25.62 Aligned_cols=188 Identities=12% Similarity=0.145 Sum_probs=97.2
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceee
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~r 121 (306)
.+-|.+.|-.-.|- .-+..+|.+.||+++.++... +|.|. .-+......++|++...+....+|+
T Consensus 175 ~lkVvvD~~nGa~~-~~~~~ll~~lG~~v~~i~~~~---dg~~~-----~~~~~~~~~e~l~~~v~~~~adlGi------ 239 (446)
T PRK14324 175 GLRIVLDTANGAAY-KVAPTVFSELGADVIVINDEP---NGFNI-----NENCGALHPENLAQEVKRYRADIGF------ 239 (446)
T ss_pred CCEEEEECCCchHH-HHHHHHHHHcCCeEEEECCCC---CCCCC-----CCCCCCCCHHHHHHHHHhCCCCEEE------
Confidence 44556666654442 223456778899998888753 35552 1111123466677666655555654
Q ss_pred ecCCCCCceEEEEEeCCc-----chHHHHHHh--hhcCCCC-eEE-EEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCC
Q 021895 122 VPDIDPKYKVAVLASKQE-----HCLVDFLYG--WQEGKLP-VEI-TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN 192 (306)
Q Consensus 122 l~~~~~~~riavl~S~~g-----~~L~~ll~~--~~~g~l~-~~I-~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~ 192 (306)
..|.|-. |++++ ..+| .-+.+|+.. ++....+ ..| +-|.|+ ..+.+.|+++|+.+...+.
T Consensus 240 a~DgDgD-R~~vv-d~~G~~l~~d~~~~l~a~~ll~~~~~~~~~VV~~v~ss------~~l~~ia~~~g~~v~~t~v--- 308 (446)
T PRK14324 240 AFDGDAD-RLVVV-DEKGEIVHGDKLLGVLAVYLKEKGALKSQAIVATVMSN------LALEEYLKKHGIELKRCNV--- 308 (446)
T ss_pred EECCCCc-eEEEE-CCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCC------hHHHHHHHHcCCeEEEeCC---
Confidence 2344443 56554 4444 222233322 2222111 223 233333 3578899999999988652
Q ss_pred ChHHHHHHHhcCCcEEEEec-----cCCC-CcCchhhhhhh-hhhhhhccCC-CccccccccCCHhHHhhcCCCeeEeC
Q 021895 193 EREEELLELVQNTDFLVLAR-----YMQP-VPLQKEAYLGY-KLLESLSSKG-SLTSYFNMILSGKFLRSYGKDVINIH 263 (306)
Q Consensus 193 ~~e~e~~~~v~~~D~vVlA~-----ym~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~il~~~~l~~~~~~iINiH 263 (306)
-..-+.+.+.+.+ ++++| |+-| .-.-+|+.+.. +++|-|+..| ++.+...++ ..|+....|+.
T Consensus 309 -G~~~i~~~m~~~~-~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~~ls~l~~~~------~~~~~~~~~~~ 379 (446)
T PRK14324 309 -GDKYVLECMKENG-INFGGEQSGHIIFSDYAKTGDGLVSALQVSALMLESKKKASEALNPF------ELYPQLLVNLK 379 (446)
T ss_pred -hHHHHHHHHHhcC-CEEEEcCcccEEecCcCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhh------hhcCceeEEEe
Confidence 1234444454344 34433 1111 01235555544 7888888776 666655442 23555566666
No 419
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=29.63 E-value=5.3e+02 Score=25.00 Aligned_cols=98 Identities=15% Similarity=0.020 Sum_probs=54.5
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC---CC--eEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK---KN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l---~G--~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
.-|+-++||-..+...+++.++.+.|+=.+......... .+ +|| |+. + +-.....++.++.+.++
T Consensus 106 ~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~f-r~~---~----~~~~~~~al~~~l~~~~-- 175 (410)
T cd06363 106 PRVVAVIGPDSSTLALTVAPLFSFFLIPQISYGASSEVLSNKELYPSFL-RTV---P----SDKDQIEAMVQLLQEFG-- 175 (410)
T ss_pred CCeEEEECCCccHHHHHHHHHhcccccccccccccCccccccccCCCee-Eec---C----CcHHHHHHHHHHHHHCC--
Confidence 458889999999999999998888877555433221111 11 233 442 1 12334455555544432
Q ss_pred cceeeecCCCCCceEEEEEeCCc--c-hHHHHHHhhhcCCCCeEEEEEe
Q 021895 117 RSVVRVPDIDPKYKVAVLASKQE--H-CLVDFLYGWQEGKLPVEITCVI 162 (306)
Q Consensus 117 ~~~~rl~~~~~~~riavl~S~~g--~-~L~~ll~~~~~g~l~~~I~~Vi 162 (306)
.+||+++.+... . .++++.+.+++. ..+|+...
T Consensus 176 -----------~k~vaii~~~~~~g~~~~~~~~~~l~~~--gi~i~~~~ 211 (410)
T cd06363 176 -----------WNWVAFLGSDDEYGRDGLQLFSELIANT--GICIAYQG 211 (410)
T ss_pred -----------CcEEEEEEeCChhHHHHHHHHHHHHHHC--CeEEEEEE
Confidence 358999987553 2 244554444433 34555443
No 420
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.51 E-value=2.6e+02 Score=27.69 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=43.8
Q ss_pred EEEEeCCcchHHHHH--HhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCC-CCEEEeCCCCCChH--HHHHHHhc---
Q 021895 132 AVLASKQEHCLVDFL--YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENERE--EELLELVQ--- 203 (306)
Q Consensus 132 avl~S~~g~~L~~ll--~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~g-Ip~~~~~~k~~~~e--~e~~~~v~--- 203 (306)
.|+++|.||-|.-++ +..+.| +.++++-.|.+. +..-.+..+++| +-+++|+- .++| .++++.++
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~--~~etv~~~~~~g~~~~y~cdi--s~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQG--NEETVKEIRKIGEAKAYTCDI--SDREEIYRLAKKVKKEV 112 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhC---CeEEEEeccccc--hHHHHHHHHhcCceeEEEecC--CCHHHHHHHHHHHHHhc
Confidence 568888888877654 333344 678778778642 222233344446 44455542 1233 34555554
Q ss_pred -CCcEEEE-eccCCC
Q 021895 204 -NTDFLVL-ARYMQP 216 (306)
Q Consensus 204 -~~D~vVl-A~ym~~ 216 (306)
++|++|= ||-|..
T Consensus 113 G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTG 127 (300)
T ss_pred CCceEEEeccccccC
Confidence 6888885 566653
No 421
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=29.42 E-value=1.8e+02 Score=27.94 Aligned_cols=55 Identities=25% Similarity=0.411 Sum_probs=37.6
Q ss_pred eEEEEEeeCCCCCCChhH--HHHHHhCC--CCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCC
Q 021895 156 VEITCVISNHDRGPNSHV--IRFLERHG--IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 156 ~~I~~Visn~~~~~~~~~--~~~A~~~g--Ip~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~ 215 (306)
.+|..+|.|+-. ..+.. .++.++.. ||++.-+ ..+..+++++. +-|++|.-|-++
T Consensus 61 ~~I~f~vVN~~~-~~s~~~~~~l~~r~~~~ipVyqq~----~~q~dvW~~L~G~kdD~~iyDRCGr 121 (238)
T PF04592_consen 61 SNISFMVVNHQG-EHSRLKYWELKRRVSEHIPVYQQD----ENQPDVWELLNGSKDDFLIYDRCGR 121 (238)
T ss_pred CceEEEEEcCCC-cchhHHHHHHHHhCCCCCceecCC----ccccCHHHHhCCCcCcEEEEeccCc
Confidence 478888888743 34433 24445554 8887622 23457888887 789999999999
No 422
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.33 E-value=1.6e+02 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=23.6
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.|++.||.+......++..|+++++.++
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 77 (279)
T PRK14178 48 HRACERVGIGSVGIELPGDATTRTVLERIR 77 (279)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 678999999998877556666778888776
No 423
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=29.32 E-value=22 Score=30.49 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=13.2
Q ss_pred EcCCccchHHHHHHHHHhcCC
Q 021895 48 HCPDEVGIVAKLSECIASRGG 68 (306)
Q Consensus 48 iGpDRpGIVAaVS~~LAe~G~ 68 (306)
.|+||+|+++++- |.-.|+
T Consensus 133 aGKDRTG~~~all--l~~lGV 151 (164)
T PF13350_consen 133 AGKDRTGVVAALL--LSLLGV 151 (164)
T ss_dssp SSSSHHHHHHHHH--HHHTT-
T ss_pred CCCccHHHHHHHH--HHHcCC
Confidence 4799999999875 343444
No 424
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=29.29 E-value=1.5e+02 Score=24.65 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=42.7
Q ss_pred ceEEEEEeCCc---chHHHHHHhhhcCCCCeEE--EEEeeCC-CCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHh
Q 021895 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEI--TCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (306)
Q Consensus 129 ~riavl~S~~g---~~L~~ll~~~~~g~l~~~I--~~Visn~-~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v 202 (306)
+||.|+.+++- .--++++.....+ ...++ .++...+ ....+..+.+.++++||+..--..+.-+ + ..+
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~-~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s~h~s~~l~--~---~~~ 74 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPK-LDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISGHRARQLT--E---DDF 74 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhh-CCEEEECCCCCCccCCCCCCHHHHHHHHHcCCCcccCeeeeCC--H---HHH
Confidence 37777777763 2345566554332 12332 2222110 1225667889999999987332111111 1 134
Q ss_pred cCCcEEEEeccCC
Q 021895 203 QNTDFLVLARYMQ 215 (306)
Q Consensus 203 ~~~D~vVlA~ym~ 215 (306)
+++|+||...--+
T Consensus 75 ~~aDlIi~m~~~~ 87 (141)
T cd00115 75 DEFDLIITMDESN 87 (141)
T ss_pred HhCCEEEEECHHH
Confidence 5899999875433
No 425
>PRK08655 prephenate dehydrogenase; Provisional
Probab=29.19 E-value=2e+02 Score=29.07 Aligned_cols=119 Identities=13% Similarity=0.276 Sum_probs=56.8
Q ss_pred ceEEEEE-eCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCc
Q 021895 129 YKVAVLA-SKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (306)
Q Consensus 129 ~riavl~-S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D 206 (306)
+||+|++ +|. |..+...|.. .| .+|+++ +++ ...+.+.|+++|+.+ .. . ..+.+.++|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~--~G---~~V~v~--~r~---~~~~~~~a~~~gv~~--~~----~----~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE--KG---FEVIVT--GRD---PKKGKEVAKELGVEY--AN----D----NIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH--CC---CEEEEE--ECC---hHHHHHHHHHcCCee--cc----C----HHHHhccCC
Confidence 4799997 564 4444433322 23 455433 332 123457788888732 11 1 123355899
Q ss_pred EEEEeccCCCCcCchhhhhhhhhhhhhccCCCcccccc--ccCCHhHHhhcC--CCeeEeCCCC---CCCCCC
Q 021895 207 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN--MILSGKFLRSYG--KDVINIHHGL---LPSFKG 272 (306)
Q Consensus 207 ~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~il~~~~l~~~~--~~iINiHpsL---LP~f~G 272 (306)
+||+|- |+....+..- .+...+.++.-+.|.-+ ..+...+.+.++ .++|-.||=+ -|.|.|
T Consensus 61 vVIlav---p~~~~~~vl~--~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g 128 (437)
T PRK08655 61 IVIISV---PINVTEDVIK--EVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKG 128 (437)
T ss_pred EEEEec---CHHHHHHHHH--HHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCC
Confidence 999984 3322222221 22223333332343333 222233333333 3689999532 245665
No 426
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=29.15 E-value=1.3e+02 Score=24.74 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=26.7
Q ss_pred CChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEeccCC
Q 021895 169 PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 169 ~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA~ym~ 215 (306)
++..+++.++++||+......+ -.+ +.+.+.|+||...--+
T Consensus 42 ~~~~a~~~l~~~Gid~~~~~~~--l~~----~~~~~~DlIv~m~~~~ 82 (140)
T smart00226 42 ADPRAVEVLKEHGIALSHHASQ--LTS----SDFKNADLVLAMDHSH 82 (140)
T ss_pred CCHHHHHHHHHcCcCccceecc--CCH----HHHHhCCEEEEeCHHH
Confidence 5678899999999986432211 111 2245899999875543
No 427
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=29.13 E-value=1.1e+02 Score=24.31 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=38.6
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcc
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~ 116 (306)
..+..+|.. -.-+++..+.+.|..|...........+.|...+............++...|.++|+++|..
T Consensus 28 h~~~f~~~~-~~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 28 HWFYFEDEE-DAEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLDYEDINAITQELEDLAKEFGGE 98 (104)
T ss_dssp EEEEES-HH-HHHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S-HHHHHHHHHHHHHHHHHHT-E
T ss_pred EEEEeCCHH-HHHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHhCcE
Confidence 345556655 44666788999999977765422223455665555443332345778888999999999853
No 428
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=29.04 E-value=5.4e+02 Score=24.91 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=30.2
Q ss_pred ceEEEEEe--CCcchHHHHHHhhhcCCCC-eEEEEEeeCCCCCCChhHHHHHHhCC-CCEEEe
Q 021895 129 YKVAVLAS--KQEHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHG-IPYHYL 187 (306)
Q Consensus 129 ~riavl~S--~~g~~L~~ll~~~~~g~l~-~~I~~Visn~~~~~~~~~~~~A~~~g-Ip~~~~ 187 (306)
.+|.|++. +++.++.+.|+.+.+-..| .||..|.-+.++....-+.++++++. +.+.++
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v 103 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLV 103 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEE
Confidence 34555544 4556677766665544444 78876655444321122334445443 455544
No 429
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.97 E-value=1.5e+02 Score=28.71 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=35.7
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+..+...++..++++.+.++ +.|=|.+- .|.|-.-+ .-++.+.++|+-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvq---lPLP~~~~---~~~i~~~I~p~K 117 (278)
T PRK14172 54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQ---LPLPKHLD---EKKITNKIDANK 117 (278)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEc---CCCCCCCC---HHHHHhccCccc
Confidence 678999999998887555566777777775 34555552 45552211 123555555544
No 430
>PRK10116 universal stress protein UspC; Provisional
Probab=28.96 E-value=1.1e+02 Score=24.52 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=22.0
Q ss_pred HHHHhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCC
Q 021895 175 RFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (306)
Q Consensus 175 ~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~ 215 (306)
+.+++.|++....-.......+++.+.++ ++|+||+..-.+
T Consensus 71 ~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~ 113 (142)
T PRK10116 71 KLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNH 113 (142)
T ss_pred HHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 34456676642211112223456777775 788888855443
No 431
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=28.83 E-value=5.4e+02 Score=25.83 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=89.2
Q ss_pred cEEEEEEcCCccchHHHH-HHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccccee
Q 021895 42 HGIHVFHCPDEVGIVAKL-SECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaV-S~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~ 120 (306)
.+-|.+.|..-.| ..+ ..+|.+.||+++.++...| |.|. ..+..+...+++++...+....+|+
T Consensus 176 ~lkVvvD~~~G~~--~~~~~~ll~~lG~~v~~i~~~~d---g~~~-----~~~~~~~~l~~l~~~v~~~~adlGi----- 240 (448)
T PRK14315 176 GLRVVVDCANGAA--YKVAPEALWELGAEVITIGVEPN---GFNI-----NEECGSTHPEALAKKVREVRADIGI----- 240 (448)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHcCCeEEEeccCCC---CCCC-----CCCCCCCCHHHHHHHHHHcCCCEEE-----
Confidence 3444555554333 333 3567788999998877543 5552 1111123567777777766666664
Q ss_pred eecCCCCCceEEEEEeCCcc-----hHHHHHHh--hhcCCCC-eEE-EEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCC
Q 021895 121 RVPDIDPKYKVAVLASKQEH-----CLVDFLYG--WQEGKLP-VEI-TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE 191 (306)
Q Consensus 121 rl~~~~~~~riavl~S~~g~-----~L~~ll~~--~~~g~l~-~~I-~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~ 191 (306)
..|.|-. |++++ ..+|+ -+.+|+.. +++.+++ ..| +-|.|+ ..+.+.|+++|..++..+.
T Consensus 241 -a~DgDgD-R~~iv-d~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss------~~i~~~a~~~g~~v~~t~v-- 309 (448)
T PRK14315 241 -ALDGDAD-RVIIV-DEKGHVVDGDQLMALIAESWAEDGRLRGGGIVATVMSN------LGLERFLADRGLTLERTAV-- 309 (448)
T ss_pred -EEcCCCc-eEEEE-cCCCcEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCC------hHHHHHHHHcCCeEEEeCC--
Confidence 2354444 67764 44442 22233221 2222222 222 223333 3578899999999988652
Q ss_pred CChHHHHHHHhcCCcEEEEec-----cCCCC-cCchhhhhhh-hhhhhhccCC-Cccccccc
Q 021895 192 NEREEELLELVQNTDFLVLAR-----YMQPV-PLQKEAYLGY-KLLESLSSKG-SLTSYFNM 245 (306)
Q Consensus 192 ~~~e~e~~~~v~~~D~vVlA~-----ym~~~-~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 245 (306)
-...+.+.+.+-+ ++++| |+-|- -.-+|+.+.. +++|-|+..| ++.+...+
T Consensus 310 --G~~~i~~~m~~~~-~~~ggE~sg~~~f~~~~~~~Dgi~a~l~lle~la~~~~~L~~l~~~ 368 (448)
T PRK14315 310 --GDRYVVEHMREGG-FNLGGEQSGHIVLSDYATTGDGLVAALQVLAVVVRSGRPASEVCRR 368 (448)
T ss_pred --hHHHHHHHHHhCC-CceeecccccEeecccCCCCcHHHHHHHHHHHHHHhCCCHHHHhhh
Confidence 1233444444223 23332 22211 1235555544 7788887655 55555444
No 432
>PRK11175 universal stress protein UspE; Provisional
Probab=28.34 E-value=4.6e+02 Score=23.95 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=38.5
Q ss_pred HhCCCCEEEeCCCCCChHHHHHHHhc--CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCCCccccccccCCHhHHhhc
Q 021895 178 ERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY 255 (306)
Q Consensus 178 ~~~gIp~~~~~~k~~~~e~e~~~~v~--~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~l~~~ 255 (306)
+.+|+++...-......-+++.+..+ ++|+||+-...+ +-..+.++| =....+++.-
T Consensus 79 ~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~--~~~~~~~~g-------------------s~~~~l~~~~ 137 (305)
T PRK11175 79 LDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQH--DKLESVIFT-------------------PTDWHLLRKC 137 (305)
T ss_pred hhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCC--cHHHhhccC-------------------hhHHHHHhcC
Confidence 35677765532111222356777665 899999987766 112222222 2345567777
Q ss_pred CCCeeEeCCC
Q 021895 256 GKDVINIHHG 265 (306)
Q Consensus 256 ~~~iINiHps 265 (306)
+.+++=++..
T Consensus 138 ~~pvlvv~~~ 147 (305)
T PRK11175 138 PCPVLMVKDQ 147 (305)
T ss_pred CCCEEEeccc
Confidence 7777777764
No 433
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=28.24 E-value=2.7e+02 Score=26.41 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=43.8
Q ss_pred ceEEEEEeCCcchHHHHHHhh----hcCCCCeEEEEEeeCCCCCCCh-hHHHHHHhCCCCEEEeCC-CC-CChHHHHHHH
Q 021895 129 YKVAVLASKQEHCLVDFLYGW----QEGKLPVEITCVISNHDRGPNS-HVIRFLERHGIPYHYLCA-KE-NEREEELLEL 201 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~----~~g~l~~~I~~Visn~~~~~~~-~~~~~A~~~gIp~~~~~~-k~-~~~e~e~~~~ 201 (306)
..|+ |.++....+..++..+ +.| -+|...-..+. ++. +..+.++++|+.+.+++. .+ ....+++.+.
T Consensus 62 ~~v~-~~~~~t~a~~~~~~~l~~~~~~g---~~vl~~~~~~~--s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~ 135 (371)
T PF00266_consen 62 EEVV-FTSNGTEALNAVASSLLNPLKPG---DEVLVTSNEHP--SNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEA 135 (371)
T ss_dssp EEEE-EESSHHHHHHHHHHHHHHHGTTT---CEEEEEESSHH--HHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHH
T ss_pred cccc-cccccchhhhhhhhccccccccc---ccccccccccc--ccccccccccccchhhhccccccccchhhhhhhhhh
Confidence 4564 4454445777777666 333 34433333331 111 356677899999988873 22 2223566666
Q ss_pred hc-CCcEEEEe
Q 021895 202 VQ-NTDFLVLA 211 (306)
Q Consensus 202 v~-~~D~vVlA 211 (306)
+. +++++++.
T Consensus 136 l~~~~~lv~~~ 146 (371)
T PF00266_consen 136 LNPDTRLVSIS 146 (371)
T ss_dssp HHTTESEEEEE
T ss_pred hccccceEEee
Confidence 65 88888764
No 434
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.21 E-value=2e+02 Score=26.72 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=46.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec-cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i-d~l~G~FfMrmeVdv~~~~~~~eeLreaL~~l 109 (306)
-+++--.|=..-+..|.+.+.++|+.|...+... ...++.-.+.+.+.+|.. .++.+.+.|.++
T Consensus 53 ~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~--~~~~~l~~l~~~ 117 (262)
T PF14257_consen 53 DLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPAD--KFDSFLDELSEL 117 (262)
T ss_pred EEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHH--HHHHHHHHHhcc
Confidence 5677789988999999999999999999998851 123455566788888753 455555555543
No 435
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=28.17 E-value=1.1e+02 Score=25.16 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEeccCC
Q 021895 168 GPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 168 ~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA~ym~ 215 (306)
..+..+++.++++||+..-...+ .-+++. +.+.|+||...=.+
T Consensus 45 ~~~~~a~~~l~~~gid~~~~~s~--~l~~~~---~~~~D~Ii~m~~~~ 87 (138)
T PF01451_consen 45 PVDPRAIAVLKEHGIDISGHRSR--QLTEED---LDEADLIITMDDSH 87 (138)
T ss_dssp SSTHHHHHHHHHTTSSCTTSBBC--BGGHHH---HHHSSEEEESSHHH
T ss_pred cccchHHHHHHHhCCCcccceec--cccccc---cccCCEEEEccHHH
Confidence 35678899999999986522111 112222 34799999975443
No 436
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=28.02 E-value=1.1e+02 Score=24.75 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 021895 144 DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 144 ~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
.-+.+++.|+ +..+.+-.+-|..--.++...|+++||||.+++.
T Consensus 20 qt~Kai~kg~--~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 20 ETLKALKKDQ--VTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHhcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 4456666663 3333333332210125788999999999999874
No 437
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.01 E-value=1.8e+02 Score=28.43 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=35.8
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc--C----CcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ--N----TDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~--~----~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++++.++ | +|=|.+ ..|.|- -++. ++.+.++|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlv---qlPLP~----~i~~~~i~~~I~p~K 117 (294)
T PRK14187 54 QRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILV---QLPVPN----HIDKNLIINTIDPEK 117 (294)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE---eCCCCC----CCCHHHHHhccCccc
Confidence 678999999998877555556777877775 3 343444 246662 2222 4566666654
No 438
>PRK06849 hypothetical protein; Provisional
Probab=28.01 E-value=3.3e+02 Score=26.40 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=21.2
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCC
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~ 165 (306)
.++||.|++.+...+| .+...+++. +++|.++-+++
T Consensus 3 ~~~~VLI~G~~~~~~l-~iar~l~~~--G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAAL-ELARLFHNA--GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHH-HHHHHHHHC--CCEEEEEeCCc
Confidence 3578777776654444 345544433 47887775554
No 439
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.91 E-value=1.4e+02 Score=29.31 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=35.7
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+......++..|+++.+.++ ++|=+.+- .|+|- -++. ++.+.++|+-
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq---lPLP~----~i~~~~i~~~I~p~K 116 (293)
T PRK14185 53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQ---LPLPK----HISEQKVIEAIDYRK 116 (293)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEe---cCCCC----CCCHHHHHhccCccc
Confidence 568999999998877555555677777775 34555552 46652 1222 3556666554
No 440
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.76 E-value=1.7e+02 Score=27.59 Aligned_cols=8 Identities=50% Similarity=0.505 Sum_probs=4.8
Q ss_pred ceEEEEEe
Q 021895 129 YKVAVLAS 136 (306)
Q Consensus 129 ~riavl~S 136 (306)
+|+.++.-
T Consensus 9 ~~~~iI~N 16 (306)
T PRK11914 9 GKVTVLTN 16 (306)
T ss_pred ceEEEEEC
Confidence 46666654
No 441
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=27.55 E-value=4.1e+02 Score=23.02 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=33.9
Q ss_pred CceEEEEEeCCc---ch-HHHHHHhhhcCCCCeEEEEEeeCCCCC-------------------CChhHHHHHHhCCCCE
Q 021895 128 KYKVAVLASKQE---HC-LVDFLYGWQEGKLPVEITCVISNHDRG-------------------PNSHVIRFLERHGIPY 184 (306)
Q Consensus 128 ~~riavl~S~~g---~~-L~~ll~~~~~g~l~~~I~~Visn~~~~-------------------~~~~~~~~A~~~gIp~ 184 (306)
.+||. ...|.| ++ +++|..+.+.+ ..++.||-|.... ++....++|+.+|+++
T Consensus 69 ~~~Vv-~i~GDG~f~~~g~~eL~ta~~~~---l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 144 (178)
T cd02008 69 DKKVV-AVIGDSTFFHSGILGLINAVYNK---ANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKR 144 (178)
T ss_pred CCCEE-EEecChHHhhccHHHHHHHHHcC---CCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCE
Confidence 34554 445555 34 67777765544 3455555554321 1134678899999998
Q ss_pred EEeCC
Q 021895 185 HYLCA 189 (306)
Q Consensus 185 ~~~~~ 189 (306)
..+..
T Consensus 145 ~~v~~ 149 (178)
T cd02008 145 VVVVD 149 (178)
T ss_pred EEecC
Confidence 88753
No 442
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=27.54 E-value=1.6e+02 Score=25.26 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=32.9
Q ss_pred CceEEEEEeCCcchHHHH---HH--hh-h-cC--CCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 021895 128 KYKVAVLASKQEHCLVDF---LY--GW-Q-EG--KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~l---l~--~~-~-~g--~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
+.-++|.+|++|.+.+-+ .. .| + .+ .....++ +||++ +++..++|+.++.++...+.
T Consensus 73 ~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~v-aiT~~----~s~l~~~a~~~~~~~~~~~~ 138 (158)
T cd05015 73 ETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFV-AITDN----GSGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred ccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEE-EEcCC----ChHHHHHcCCCcceeeeCCC
Confidence 456889999999543322 11 11 1 11 1234555 45554 34566668889999888763
No 443
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=27.54 E-value=1.3e+02 Score=31.91 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=31.5
Q ss_pred CceEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC
Q 021895 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
+.+|.|++.|+ |..+...|.+ .| .++++|=.|+ .-.+.+++.|.++.+=+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g---~~vvvID~d~------~~v~~~~~~g~~v~~GD 450 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SG---VKMTVLDHDP------DHIETLRKFGMKVFYGD 450 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CC---CCEEEEECCH------HHHHHHHhcCCeEEEEe
Confidence 46899999887 4566555553 22 3454443333 23567788899988755
No 444
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.50 E-value=1.8e+02 Score=28.43 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=23.2
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.|++.||.+......++..|+++++.++
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~ 84 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKEQTTTEELLGVID 84 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 678999999999887555556777777775
No 445
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=27.41 E-value=1.9e+02 Score=29.35 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=44.8
Q ss_pred CceEEEEEeCCcchHHHHHHhhh-cCCCCeEEEEEeeCCCCCCChhHHHHHHhCC-CCEEEeCCCCCChHHHHHHHhcCC
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~-~g~l~~~I~~Visn~~~~~~~~~~~~A~~~g-Ip~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
.+||.|+++|+-.. .....+. .| ..+ ..|+|+. ...+..+|++++ ..+..+ +++.+.+.++
T Consensus 181 ~kkvlviGaG~~a~--~va~~L~~~g--~~~--I~V~nRt---~~ra~~La~~~~~~~~~~~--------~~l~~~l~~a 243 (414)
T PRK13940 181 SKNVLIIGAGQTGE--LLFRHVTALA--PKQ--IMLANRT---IEKAQKITSAFRNASAHYL--------SELPQLIKKA 243 (414)
T ss_pred CCEEEEEcCcHHHH--HHHHHHHHcC--CCE--EEEECCC---HHHHHHHHHHhcCCeEecH--------HHHHHHhccC
Confidence 46899999986322 2222222 23 123 3677873 345688888876 432221 2455667789
Q ss_pred cEEEEeccCCCCcCch
Q 021895 206 DFLVLARYMQPVPLQK 221 (306)
Q Consensus 206 D~vVlA~ym~~~~~~~ 221 (306)
|+||.|- .-|-|+..
T Consensus 244 DiVI~aT-~a~~~vi~ 258 (414)
T PRK13940 244 DIIIAAV-NVLEYIVT 258 (414)
T ss_pred CEEEECc-CCCCeeEC
Confidence 9999975 35566654
No 446
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.39 E-value=79 Score=31.58 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=35.1
Q ss_pred CCCceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEE
Q 021895 126 DPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (306)
Q Consensus 126 ~~~~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~ 186 (306)
++| ||+|.++..| +-|.++..+.. ..+.+++...-. ..-++.|++.|||.+.
T Consensus 3 ~pk-sVvV~GtrFGq~Ylaaf~~~~~----~~eLaGiLaqGS----eRSRaLAh~~GVply~ 55 (361)
T COG4693 3 DPK-SVVVCGTRFGQFYLAAFAAAPP----RFELAGILAQGS----ERSRALAHRLGVPLYC 55 (361)
T ss_pred CCc-eEEEecchHHHHHHHHhccCCC----Cceeehhhhccc----HHHHHHHHHhCCcccc
Confidence 344 9999999988 44554433211 267888877642 2357889999999865
No 447
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.33 E-value=3.4e+02 Score=24.94 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=28.0
Q ss_pred eEEEEEeCCcchH---HHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC
Q 021895 130 KVAVLASKQEHCL---VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 130 riavl~S~~g~~L---~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
||.+-+.+.|..+ .++..++... .++|..+.++. . ...+..+..|++++.++
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~--G~ev~v~~~~~-~----~~~~~~~~~~~~~~~~~ 55 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER--GAEVLFLGTKR-G----LEARLVPKAGIPLHTIP 55 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC--CCEEEEEECCC-c----chhhcccccCCceEEEE
Confidence 4555555555333 2556665542 36887554432 1 12233445689988876
No 448
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=27.30 E-value=4.5e+02 Score=24.76 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=43.9
Q ss_pred CCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCC----CChhHHHHHHhCCCCEEEeC
Q 021895 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 124 ~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~----~~~~~~~~A~~~gIp~~~~~ 188 (306)
+.++...|+.++|.. |...-|++|+.+.+|. +||++++-. .++...+..++.|..+.++.
T Consensus 31 ~l~~~a~VvlviSnk--~~~~GL~rA~~~gIPt---~vip~k~~a~R~~~d~eL~~~l~e~~~d~v~lA 94 (206)
T KOG3076|consen 31 SLGPNADVVLVISNK--KGVYGLERAADAGIPT---LVIPHKRFASREKYDNELAEVLLELGTDLVCLA 94 (206)
T ss_pred CcCCCceEEEEEecc--ccchhhhHHHHCCCCE---EEeccccccccccCcHHHHHHHHHhCCCEEEeh
Confidence 456788999999998 5556688999988876 899884211 13556667778888877664
No 449
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.27 E-value=1.3e+02 Score=28.32 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=42.3
Q ss_pred hHHHHHHhCCCCEEEeCCCC-CC-------------------hHHHHHHHhc-CCcEEEEeccCCCCcCchhhhhhhhhh
Q 021895 172 HVIRFLERHGIPYHYLCAKE-NE-------------------REEELLELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLL 230 (306)
Q Consensus 172 ~~~~~A~~~gIp~~~~~~k~-~~-------------------~e~e~~~~v~-~~D~vVlA~ym~~~~~~~~~~~~~~~~ 230 (306)
..+..|+++|||+.|....+ .. .++++.+-+. ..|=+||..|.. ++|---+|+
T Consensus 62 ~Lr~~~~~~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p~~~~vv~~l~P~~~D~vL~kwrY------sAF~~s~Ll 135 (218)
T COG1535 62 KLRIWCKQAGIPVVYTAQPGEQSPEDRALLKDFWGPGLTASPEQQKVVDELAPGADDTVLTKWRY------SAFHRSPLL 135 (218)
T ss_pred HHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCChhhhhhHHhcCCCCCceEEeeeeh------hhhhcChHH
Confidence 57889999999999876332 11 1234444444 667778888876 777777899
Q ss_pred hhhccCC
Q 021895 231 ESLSSKG 237 (306)
Q Consensus 231 ~~~~~~~ 237 (306)
+-|..+|
T Consensus 136 q~lr~~g 142 (218)
T COG1535 136 QMLREKG 142 (218)
T ss_pred HHHHHcC
Confidence 9888877
No 450
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=27.21 E-value=1.9e+02 Score=26.70 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=42.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhhhhcccceeeec-CCCCC-ceEEEEEeCCcc-hHHHHHHhhhcCCCCeEEEEEeeCCC
Q 021895 90 FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP-DIDPK-YKVAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNHD 166 (306)
Q Consensus 90 Vdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~-~~~~~-~riavl~S~~g~-~L~~ll~~~~~g~l~~~I~~Visn~~ 166 (306)
.++++ +.++++|.+.+++ .++... +++. +.+.+ +||| +++|+|. .+...+ +.| ++ ++||-.
T Consensus 136 ~~l~~-~~s~~el~~~vk~---~l~~~~--vr~~g~~~~~v~rVa-v~~GsG~~~i~~a~---~~g---~D--~~ITGd- 199 (241)
T PF01784_consen 136 GELPE-PMSLEELAERVKE---KLGLPG--VRVVGDPDKKVKRVA-VCGGSGGSFIEEAA---EAG---AD--VYITGD- 199 (241)
T ss_dssp EEEEE-EEEHHHHHHHHHH---HTTSS---EEEESCTTSEEEEEE-EECSSSGGGHHHHH---HTT---SS--EEEESS-
T ss_pred eecCC-CCCHHHHHHHHHH---HcCCCc--EEecCCCCCcccEEE-EEcccCccHHHHHH---hCC---Ce--EEEEcc-
Confidence 34443 3467777776665 555433 4444 33333 5788 4556665 333222 233 22 344443
Q ss_pred CCCChhHHHHHHhCCCCEEEeCC
Q 021895 167 RGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 167 ~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
-.-+....|++.|+.+..+.+
T Consensus 200 --~~~h~~~~a~~~g~~lI~~gH 220 (241)
T PF01784_consen 200 --IKYHDAQDAKENGINLIDAGH 220 (241)
T ss_dssp ----HHHHHHHHHCTSEEEE--H
T ss_pred --CcHHHHHHHHHCCCEEEEcCC
Confidence 123567788999999877654
No 451
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=27.16 E-value=1.5e+02 Score=22.87 Aligned_cols=38 Identities=29% Similarity=0.256 Sum_probs=24.8
Q ss_pred HHHHhhhcCCCCeEEEEEeeCCCC-C----C-ChhHHHHHHhCCCCEE
Q 021895 144 DFLYGWQEGKLPVEITCVISNHDR-G----P-NSHVIRFLERHGIPYH 185 (306)
Q Consensus 144 ~ll~~~~~g~l~~~I~~Visn~~~-~----~-~~~~~~~A~~~gIp~~ 185 (306)
++++.+++| +|-+||.+.+. . . ....++.|.+++||+.
T Consensus 46 ~i~~~i~~g----~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNG----EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCC----CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 456666666 56677776542 1 1 2356788999999974
No 452
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=27.12 E-value=3.6e+02 Score=26.67 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCC-eEEEEEeeCC
Q 021895 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVISNH 165 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~-~~I~~Visn~ 165 (306)
..|..++.++.++|| ..+.+++.+. ...++..+-||. ..|..+|. -|.+| ..|+-|....
T Consensus 4 ~~~~~~~~~i~~~~g-~~~~~~~~~~-~~~~~~~isTGi-~~LD~~Lg---~GGlp~G~iteI~Gp~ 64 (325)
T cd00983 4 KALELALKQIEKKFG-KGSIMKLGDD-AVQDVEVIPTGS-LSLDIALG---IGGYPKGRIIEIYGPE 64 (325)
T ss_pred HHHHHHHHHHHHHhC-CcceEECccc-cccCCceecCCC-HHHHHHhc---CCCccCCeEEEEECCC
Confidence 578888999999998 5666777653 333555555553 34554442 14455 4566665543
No 453
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.98 E-value=1.7e+02 Score=28.59 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=36.1
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+..+...++..|+++.+.++ +.|=|.+- .|+|-.-+ .-++.+.++|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq---~PLP~~i~---~~~i~~~I~p~K 117 (297)
T PRK14186 54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQ---LPLPKHLD---EVPLLHAIDPDK 117 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe---CCCCCCCC---HHHHHhccCccc
Confidence 678999999999887555556677777775 34555552 46652211 124556666554
No 454
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=26.91 E-value=75 Score=27.83 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=25.2
Q ss_pred cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeC
Q 021895 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (306)
Q Consensus 139 g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~ 188 (306)
..|+......+ | -..|+|| |+ ...+++++.|||+.++.
T Consensus 87 De~i~~~a~~~--~-----~~iVaTn-D~----eLk~rlr~~GIPvi~lr 124 (136)
T COG1412 87 DECLLEAALKH--G-----RYIVATN-DK----ELKRRLRENGIPVITLR 124 (136)
T ss_pred HHHHHHHHHHc--C-----CEEEEeC-CH----HHHHHHHHcCCCEEEEe
Confidence 45666554432 2 3345565 33 58999999999999986
No 455
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.88 E-value=1.9e+02 Score=28.20 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=35.9
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhhhhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~~~~~ 237 (306)
.+.|++.||.+..+...++..|+++++.++ ++|=|.+- .|.|-.-+ .-++.+.++|+-
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq---lPLP~~id---~~~i~~~I~p~K 116 (286)
T PRK14184 53 ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQ---LPLPKGLD---SQRCLELIDPAK 116 (286)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEe---cCCCCCCC---HHHHHhccCccc
Confidence 568999999998887656666777887776 34544442 45552211 123556665554
No 456
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=26.67 E-value=4.1e+02 Score=26.53 Aligned_cols=87 Identities=9% Similarity=0.096 Sum_probs=53.0
Q ss_pred cCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCC-hhHHHHHHhCCCCEE-EeCCCCCChHHHHHH
Q 021895 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYH-YLCAKENEREEELLE 200 (306)
Q Consensus 123 ~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~-~~~~~~A~~~gIp~~-~~~~k~~~~e~e~~~ 200 (306)
....++.||.=+++|.|.-+-+.+... ++.+.+|.++=-+. .| ..+.+.+++.|..-. .+. ..+.-+.+-++
T Consensus 131 ~~~g~pvrIlDIAaG~GRYvlDal~~~--~~~~~~i~LrDys~---~Nv~~g~~li~~~gL~~i~~f~-~~dAfd~~~l~ 204 (311)
T PF12147_consen 131 REQGRPVRILDIAAGHGRYVLDALEKH--PERPDSILLRDYSP---INVEKGRALIAERGLEDIARFE-QGDAFDRDSLA 204 (311)
T ss_pred HhcCCceEEEEeccCCcHHHHHHHHhC--CCCCceEEEEeCCH---HHHHHHHHHHHHcCCccceEEE-ecCCCCHhHhh
Confidence 345688999999999997665555542 33356665554443 23 467888889886532 111 11112223333
Q ss_pred Hhc-CCcEEEEeccCC
Q 021895 201 LVQ-NTDFLVLARYMQ 215 (306)
Q Consensus 201 ~v~-~~D~vVlA~ym~ 215 (306)
.+. +|+++|+.|---
T Consensus 205 ~l~p~P~l~iVsGL~E 220 (311)
T PF12147_consen 205 ALDPAPTLAIVSGLYE 220 (311)
T ss_pred ccCCCCCEEEEecchh
Confidence 444 899999999755
No 457
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=26.65 E-value=2.6e+02 Score=27.26 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=62.7
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec-----c---------CCCC-eEEEEEEEEeCCCCCCHHHHHHHHHH
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-----P---------EKKN-VFYSRSEFIFDPIKWPREQMDEDFFK 108 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~i-----d---------~l~G-~FfMrmeVdv~~~~~~~eeLreaL~~ 108 (306)
||.+.||.-.|= .+++-.||++++.|++.+... + ..++ ...|+=.+++. ..++..++.+.-.+
T Consensus 6 ii~I~GpTasGK-S~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~-e~~sv~~f~~~a~~ 83 (300)
T PRK14729 6 IVFIFGPTAVGK-SNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPI-KEYNLGIFYKEALK 83 (300)
T ss_pred EEEEECCCccCH-HHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCC-CceeHHHHHHHHHH
Confidence 789999999997 556778999999999877642 0 0011 13334445544 46788888777666
Q ss_pred HHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhh
Q 021895 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149 (306)
Q Consensus 109 la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~ 149 (306)
..++.. .+-|+.|++-|+|-=+++|++.+
T Consensus 84 ~i~~i~------------~~gk~PilvGGTglYi~all~gl 112 (300)
T PRK14729 84 IIKELR------------QQKKIPIFVGGSAFYFKHLKYGL 112 (300)
T ss_pred HHHHHH------------HCCCCEEEEeCchHHHHHHHcCC
Confidence 655442 23478899999988888888753
No 458
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=26.64 E-value=4.7e+02 Score=23.46 Aligned_cols=102 Identities=11% Similarity=-0.013 Sum_probs=59.2
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhh--hhcccc
Q 021895 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM--FNAMRS 118 (306)
Q Consensus 41 ~k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~e--lgl~~~ 118 (306)
|++.+.+.-| .++...+.++...+.... +...+ ..+.=..+.++..++++. ..+++.+.+.+++.. |.+.-.
T Consensus 1 ~RlFiAl~~p--~~i~~~i~~~~~~~~~~~-~~k~v-~~en~HiTL~flGev~e~--~~~~l~~~l~~i~~~~~f~i~l~ 74 (180)
T COG1514 1 MRLFIALDPP--AEIAERLARIRARLKGAR-AIKWV-EPENLHITLKFLGEVDED--KADELIEALARIAAPEPFPITLD 74 (180)
T ss_pred CeeEEEecCC--HHHHHHHHHHHHhcCccc-ccccc-cccCceEEEEccCCcCch--HHHHHHHHHHHhhcCCceEEEEe
Confidence 3555555554 456677777777776665 44443 233456888888898864 689999999999884 543211
Q ss_pred eeeecCCCCCceEEEEEeCCcchHHHHHHh
Q 021895 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYG 148 (306)
Q Consensus 119 ~~rl~~~~~~~riavl~S~~g~~L~~ll~~ 148 (306)
-.-.....+..||+.+.-.+-..|.+|-..
T Consensus 75 g~g~F~~~~~~rvi~~~v~~~~~L~~L~~~ 104 (180)
T COG1514 75 GAGSFPNPRRPRVIWVGVEETEELRALAEE 104 (180)
T ss_pred eEcccCCCCCCcEEEEcCCCcHHHHHHHHH
Confidence 111111223456666555542335555443
No 459
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=26.45 E-value=1.8e+02 Score=29.55 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=40.4
Q ss_pred CCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCCh-hHHHHHHhCCCCEEEeC-CCCCCh--HHHHHHHh
Q 021895 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-HVIRFLERHGIPYHYLC-AKENER--EEELLELV 202 (306)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~-~~~~~A~~~gIp~~~~~-~k~~~~--e~e~~~~v 202 (306)
++.||+|+.+|++ |++- .+..-+.+|. | .|+ .+..+++++|+.+.... .+.+.. .+.+.+++
T Consensus 192 ~~prV~IisTGdE-----l~~~-g~~~~~g~i~----d----sN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~ 257 (419)
T PRK14690 192 RPLRVAVLSTGDE-----LVEP-GALAEVGQIY----D----ANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAA 257 (419)
T ss_pred cCCEEEEEEcccc-----ccCC-CCCCCCCeEE----e----CHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhC
Confidence 5679999999874 2211 0100013332 1 344 45667899998776544 222211 12333344
Q ss_pred cCCcEEEEeccCC
Q 021895 203 QNTDFLVLARYMQ 215 (306)
Q Consensus 203 ~~~D~vVlA~ym~ 215 (306)
++.|+|++.|=+-
T Consensus 258 ~~~DlIItTGG~S 270 (419)
T PRK14690 258 AEADVILTSGGAS 270 (419)
T ss_pred ccCCEEEEcCCcc
Confidence 4799999987443
No 460
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.44 E-value=3.2e+02 Score=21.43 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=29.3
Q ss_pred HHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 145 FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 145 ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.+++.|+ +..+.+-+|-+..--.++...|+.++||+.+... .+|+-..+.
T Consensus 19 v~kai~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s-----~~eLG~a~G 70 (82)
T PRK13602 19 TVKALKRGS--VKEVVVAEDADPRLTEKVEALANEKGVPVSKVDS-----MKKLGKACG 70 (82)
T ss_pred HHHHHHcCC--eeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECC-----HHHHHHHHC
Confidence 344555563 4444343443211113577789999999998762 245655554
No 461
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.40 E-value=6.5e+02 Score=25.03 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=78.8
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceee
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~r 121 (306)
.+-|.+.+..-.|- .-+..+|.+.||+++.++... +|.|--.. ..+.+..++++.+...+....+|+
T Consensus 164 ~lkIvid~~~G~~~-~~~~~~l~~lg~~v~~~~~~~---d~~f~~~~---p~p~~~~l~~l~~~v~~~~adlgi------ 230 (439)
T cd03087 164 GLKVVVDCGNGAGS-LTTPYLLRELGCKVITLNANP---DGFFPGRP---PEPTPENLSELMELVRATGADLGI------ 230 (439)
T ss_pred CCEEEEECCCCchH-HHHHHHHHHcCCEEEEECCcC---CCCCCCCC---CCCCHHHHHHHHHHHHhcCCCEEE------
Confidence 45556666655553 334566888899998876643 45553221 111112334444444433334443
Q ss_pred ecCCCCCceEEEEEeCCcc-----hHHHHHHh--hhcCCCCeEEE-EEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC
Q 021895 122 VPDIDPKYKVAVLASKQEH-----CLVDFLYG--WQEGKLPVEIT-CVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE 193 (306)
Q Consensus 122 l~~~~~~~riavl~S~~g~-----~L~~ll~~--~~~g~l~~~I~-~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~ 193 (306)
..|.|-. |+++ +..+|. -+.+|+.. ++.+ +..|+ -|.|+ ..+.+.|+++|+.++....-
T Consensus 231 a~D~DgD-R~~~-vd~~G~~l~~d~~~~l~a~~ll~~~--~~~vv~~v~ss------~~l~~~a~~~g~~~~~~~~G--- 297 (439)
T cd03087 231 AHDGDAD-RAVF-VDEKGRFIDGDKLLALLAKYLLEEG--GGKVVTPVDAS------MLVEDVVEEAGGEVIRTPVG--- 297 (439)
T ss_pred EEcCCCc-eEEE-ECCCCCEechHHHHHHHHHHHHhcC--CCcEEEeccch------HHHHHHHHHcCCEEEEEecC---
Confidence 2344443 5663 355542 22233222 1121 12222 22222 34688999999999886531
Q ss_pred hHHHHHHHhcCCcEEEEec-----cCCC-CcCchhhhhhh-hhhhhhccC
Q 021895 194 REEELLELVQNTDFLVLAR-----YMQP-VPLQKEAYLGY-KLLESLSSK 236 (306)
Q Consensus 194 ~e~e~~~~v~~~D~vVlA~-----ym~~-~~~~~~~~~~~-~~~~~~~~~ 236 (306)
...+.+.+.+.| ++++| |+-| .-.-+|+.+.. ++.|-|+..
T Consensus 298 -~k~i~~~m~~~~-~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~l~~~ 345 (439)
T cd03087 298 -DVHVAEEMIENG-AVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAEE 345 (439)
T ss_pred -hHHHHHHHHhcC-CeEEecCCCCEecCCcCCcCCHHHHHHHHHHHHhcC
Confidence 233444443334 33443 2111 11234444433 667766543
No 462
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.39 E-value=1.7e+02 Score=28.73 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=23.0
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.|++.||.+......++..++++.+.++
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~ 84 (297)
T PRK14168 55 IKTAHRLGFHEIQDNQSVDITEEELLALID 84 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 678999999998877555555677777775
No 463
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.36 E-value=2.3e+02 Score=25.79 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=32.7
Q ss_pred CceEEEEEeCC-cchHHHHHHhhhcCCCC-eEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~g~l~-~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
++||+|++.|. |..+. .++.....+ .+| .+ .+++ .....++++.+|+.+. . ..++ .+.++
T Consensus 2 mm~I~iIG~G~mG~~la---~~l~~~g~~~~~v-~v-~~r~---~~~~~~~~~~~g~~~~--~-----~~~~---~~~~a 63 (267)
T PRK11880 2 MKKIGFIGGGNMASAII---GGLLASGVPAKDI-IV-SDPS---PEKRAALAEEYGVRAA--T-----DNQE---AAQEA 63 (267)
T ss_pred CCEEEEEechHHHHHHH---HHHHhCCCCcceE-EE-EcCC---HHHHHHHHHhcCCeec--C-----ChHH---HHhcC
Confidence 46899999876 33332 222222122 333 23 3432 2234445555566321 1 1122 24589
Q ss_pred cEEEEec
Q 021895 206 DFLVLAR 212 (306)
Q Consensus 206 D~vVlA~ 212 (306)
|+|+++-
T Consensus 64 dvVil~v 70 (267)
T PRK11880 64 DVVVLAV 70 (267)
T ss_pred CEEEEEc
Confidence 9999974
No 464
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.35 E-value=1.9e+02 Score=28.17 Aligned_cols=42 Identities=36% Similarity=0.551 Sum_probs=29.3
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVP 218 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~ 218 (306)
.+.|++.||.+......++..|+++.+.++ ++|=|.+- .|+|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq---~PlP 100 (285)
T PRK14191 53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQ---LPLP 100 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe---CCCC
Confidence 678999999998887655556777877775 34544442 4666
No 465
>PRK13337 putative lipid kinase; Reviewed
Probab=26.20 E-value=2e+02 Score=27.12 Aligned_cols=7 Identities=0% Similarity=0.325 Sum_probs=3.3
Q ss_pred eEEEEEe
Q 021895 130 KVAVLAS 136 (306)
Q Consensus 130 riavl~S 136 (306)
|+.++.-
T Consensus 3 r~~~I~N 9 (304)
T PRK13337 3 RARIIYN 9 (304)
T ss_pred eEEEEEC
Confidence 4555443
No 466
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=26.16 E-value=2.3e+02 Score=27.92 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=40.4
Q ss_pred eEEEEEeCC-cchHHHHHHhhhcCC-----CCeEEEEEeeCCCCCCChhHHHH-HHhCCCCEEEeC-CC--CC-ChHHHH
Q 021895 130 KVAVLASKQ-EHCLVDFLYGWQEGK-----LPVEITCVISNHDRGPNSHVIRF-LERHGIPYHYLC-AK--EN-EREEEL 198 (306)
Q Consensus 130 riavl~S~~-g~~L~~ll~~~~~g~-----l~~~I~~Visn~~~~~~~~~~~~-A~~~gIp~~~~~-~k--~~-~~e~e~ 198 (306)
||+|+++|. |+.|..+|.. .|. ...+|....-+.+. .+....+. -+.|. ...+++ -+ .+ ....++
T Consensus 1 kI~VIGaG~wGtALA~~la~--ng~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~-n~~ylpgi~Lp~~i~at~dl 76 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE--NARALPELFEESVRMWVFEEEI-EGRNLTEIINTTHE-NVKYLPGIKLPANLVAVPDL 76 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCcccccCCceEEEEEecccc-CCHHHHHHHHhcCC-CccccCCCcCCCCeEEECCH
Confidence 699999998 5888777743 231 12566665432211 12223333 33332 333333 11 11 011245
Q ss_pred HHHhcCCcEEEEe
Q 021895 199 LELVQNTDFLVLA 211 (306)
Q Consensus 199 ~~~v~~~D~vVlA 211 (306)
.+.++++|+|++|
T Consensus 77 ~eal~~ADiIIlA 89 (342)
T TIGR03376 77 VEAAKGADILVFV 89 (342)
T ss_pred HHHHhcCCEEEEE
Confidence 5666799999998
No 467
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=26.14 E-value=5e+02 Score=23.89 Aligned_cols=89 Identities=8% Similarity=0.022 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhhhcccc-eeeecCCCCCceEEEEEeCCc-chHHHHHHhhhc--CCCCeEEEEEeeCCCCCCChhHHH
Q 021895 100 EQMDEDFFKLSKMFNAMRS-VVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQE--GKLPVEITCVISNHDRGPNSHVIR 175 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~-~~rl~~~~~~~riavl~S~~g-~~L~~ll~~~~~--g~l~~~I~~Visn~~~~~~~~~~~ 175 (306)
++.++...+.++++|-..+ .-+-....+...|+++..... .-...++.++.+ .+....+..+.++.+.......++
T Consensus 35 ~~tr~~V~~~a~elgY~p~~~a~~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 114 (342)
T PRK10014 35 TATGERVNQAIEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFS 114 (342)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHH
Confidence 5567777788888873221 111112334567888886532 233333332211 011234433333322100123344
Q ss_pred HHHhCCCCEEEeC
Q 021895 176 FLERHGIPYHYLC 188 (306)
Q Consensus 176 ~A~~~gIp~~~~~ 188 (306)
.+...++--..+.
T Consensus 115 ~l~~~~vdgiIi~ 127 (342)
T PRK10014 115 TLLNQGVDGVVIA 127 (342)
T ss_pred HHHhCCCCEEEEe
Confidence 5566676655554
No 468
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.07 E-value=4.3e+02 Score=23.23 Aligned_cols=112 Identities=11% Similarity=0.132 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHH
Q 021895 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176 (306)
Q Consensus 98 ~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~ 176 (306)
-..++.+.+.+.++++|. .+.+..+... ......++...+.. +-+||............+.
T Consensus 13 ~~~~~~~~i~~~a~~~g~--------------~~~~~~~~~~~~~~~~~i~~l~~~~----vdgii~~~~~~~~~~~~~~ 74 (269)
T cd06281 13 LLAQLFSGAEDRLRAAGY--------------SLLIANSLNDPERELEILRSFEQRR----MDGIIIAPGDERDPELVDA 74 (269)
T ss_pred cHHHHHHHHHHHHHHcCC--------------EEEEEeCCCChHHHHHHHHHHHHcC----CCEEEEecCCCCcHHHHHH
Confidence 467888888888887763 2333434332 22333444443332 2222221111122345677
Q ss_pred HHhCCCCEEEeCCC-C--------CChH--HHHHHHhc---CCcEEEEeccCCCCcCchhhhhhhh
Q 021895 177 LERHGIPYHYLCAK-E--------NERE--EELLELVQ---NTDFLVLARYMQPVPLQKEAYLGYK 228 (306)
Q Consensus 177 A~~~gIp~~~~~~k-~--------~~~e--~e~~~~v~---~~D~vVlA~ym~~~~~~~~~~~~~~ 228 (306)
+++++||+..+... + +.++ ..+.+.+. .-.++++.+... .....+|+-|++
T Consensus 75 ~~~~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~~~i~~l~~~~~-~~~~~~R~~Gf~ 139 (269)
T cd06281 75 LASLDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLGHRRIALVGGGSN-TRPGRERLEGYK 139 (269)
T ss_pred HHhCCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCCCcEEEEecCccc-cccHHHHHHHHH
Confidence 88899999887632 1 1111 22333332 456777766433 334556777764
No 469
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=25.90 E-value=2.7e+02 Score=27.95 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=21.7
Q ss_pred CceEEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCC
Q 021895 128 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNH 165 (306)
Q Consensus 128 ~~riavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~ 165 (306)
.+|+.|+++++. ..+.+++. +.+....++++++...
T Consensus 124 ~rrvLIIGag~~~~~L~~l~~--~~~~~g~~vVGfi~~d 160 (442)
T TIGR03013 124 KRRILVLGTGPRAREIARLRR--SSDRRGHEIVGFVPLP 160 (442)
T ss_pred CCcEEEEECCHHHHHHHHHHH--hCccCCeEEEEEEcCC
Confidence 467888888763 23333322 1344568999999643
No 470
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=25.65 E-value=2.2e+02 Score=23.15 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHh--cCC-cEEEEec
Q 021895 173 VIRFLERHGIPYHYLCAKENEREEELLELV--QNT-DFLVLAR 212 (306)
Q Consensus 173 ~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v--~~~-D~vVlA~ 212 (306)
+++..+.++..+.+........++++.+.. .+. |.||++|
T Consensus 20 v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~G 62 (130)
T PF00781_consen 20 VEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVG 62 (130)
T ss_dssp HHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEc
Confidence 456677777776665532222334444322 244 7777765
No 471
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=25.61 E-value=4e+02 Score=22.47 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=33.6
Q ss_pred EEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCC---hhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 134 l~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~---~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
+++|...+ +.+++.|+ +..+.+-.|- .++ .++..+|++++||+.++..+ +++-+.+.
T Consensus 31 lv~G~~~v----~kaikkgk--akLVilA~D~--s~~~i~~~~~~lc~~~~Vp~~~~~tk-----~eLG~a~G 90 (122)
T PRK04175 31 IKKGTNET----TKAVERGI--AKLVVIAEDV--DPEEIVAHLPLLCEEKKIPYVYVPSK-----KDLGKAAG 90 (122)
T ss_pred EeEcHHHH----HHHHHcCC--ccEEEEeCCC--ChHHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHhC
Confidence 55665444 44555563 3444333333 232 47788899999999887532 45666665
No 472
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=25.58 E-value=5.5e+02 Score=26.58 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 97 ~~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
.+.+++++.++.+-.-.|= .+.-+.+ ...|.|--.+..-.|++.|...+. ..+..+.+|+-+
T Consensus 306 ~~~e~i~~~l~~~~~v~GR----mE~v~~~-~~~v~VDyAHnPd~le~~L~~~~~-~~~g~li~VfG~ 367 (475)
T COG0769 306 VDLEDILAGLETLKPVPGR----MELVNIG-GKLVIVDYAHNPDGLEKALRAVRL-HAAGRLIVVFGC 367 (475)
T ss_pred CCHHHHHHHHHhcCCCCCc----ceEecCC-CCeEEEEeccChHHHHHHHHHHHh-hcCCcEEEEECc
Confidence 4455666666554433331 1122333 567888888888888888887761 011235555543
No 473
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.53 E-value=2.2e+02 Score=29.89 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc
Q 021895 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE 139 (306)
Q Consensus 99 ~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g 139 (306)
.+.+++++++.++.+|. . . ++...+++||.|++-..+
T Consensus 35 ~~~~rre~a~~aq~~g~-t--~-vpp~~~~Kkv~V~~Np~a 71 (535)
T KOG4435|consen 35 NQGIRREYAKIAQKYGE-T--T-VPPETRPKKVFVLVNPEA 71 (535)
T ss_pred hHHHHHHHHHHHHHhcc-c--c-CCcccccceEEEEechhh
Confidence 46789999999999983 1 2 344556779999987654
No 474
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=25.47 E-value=51 Score=30.01 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=52.7
Q ss_pred eEEEEEeCCc-chHHHHHHhhhcCCCC-eEEEEEeeCCCCCC--ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 130 KVAVLASKQE-HCLVDFLYGWQEGKLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 130 riavl~S~~g-~~L~~ll~~~~~g~l~-~~I~~Visn~~~~~--~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
||++++-|+- ..+.-+-+-.....|+ .+|+++=.|.+|.. ..-+.+.++++|.++.+... ..++ +.++.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~t--td~~----eAl~gA 74 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEAT--TDRR----EALEGA 74 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEE--SSHH----HHHTTE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEe--CCHH----HHhCCC
Confidence 7899988885 2332222334567777 57776655543321 12456778899988766432 1222 446699
Q ss_pred cEEEEeccCCCCcCchhhhhhhhhhh
Q 021895 206 DFLVLARYMQPVPLQKEAYLGYKLLE 231 (306)
Q Consensus 206 D~vVlA~ym~~~~~~~~~~~~~~~~~ 231 (306)
|+|+.. .+ |--.+-+.+|.|+|.
T Consensus 75 DfVi~~--ir-vGg~~~r~~De~Ip~ 97 (183)
T PF02056_consen 75 DFVINQ--IR-VGGLEAREIDEEIPL 97 (183)
T ss_dssp SEEEE------TTHHHHHHHHHHTGG
T ss_pred CEEEEE--ee-ecchHHHHHHHHHHH
Confidence 999984 22 223456667766443
No 475
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.45 E-value=2.1e+02 Score=26.14 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=33.7
Q ss_pred ceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCC-CCEEEeCCCCCChHHHHHHHhcCCcE
Q 021895 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQNTDF 207 (306)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~g-Ip~~~~~~k~~~~e~e~~~~v~~~D~ 207 (306)
+||+|++.|.- -.++..++........ ...++|++ .....+++++++ +.. .. ..++ +++++|+
T Consensus 1 m~IgiIG~G~m--G~aia~~L~~~g~~~~-~i~v~~r~---~~~~~~l~~~~~~~~~--~~-----~~~~---~~~~aDv 64 (258)
T PRK06476 1 MKIGFIGTGAI--TEAMVTGLLTSPADVS-EIIVSPRN---AQIAARLAERFPKVRI--AK-----DNQA---VVDRSDV 64 (258)
T ss_pred CeEEEECcCHH--HHHHHHHHHhCCCChh-eEEEECCC---HHHHHHHHHHcCCceE--eC-----CHHH---HHHhCCE
Confidence 37999998862 1223333332222211 12456652 234455666553 322 11 1222 3447899
Q ss_pred EEEecc
Q 021895 208 LVLARY 213 (306)
Q Consensus 208 vVlA~y 213 (306)
|+++--
T Consensus 65 Vilav~ 70 (258)
T PRK06476 65 VFLAVR 70 (258)
T ss_pred EEEEeC
Confidence 999843
No 476
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.40 E-value=1e+02 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCCcEEEEeccCC
Q 021895 173 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ 215 (306)
Q Consensus 173 ~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~D~vVlA~ym~ 215 (306)
..+.++++|+++.+-.. ...++.+...+.|+|+++-=.+
T Consensus 23 ~~~~~~~~gi~~~v~a~----~~~~~~~~~~~~Dvill~pqi~ 61 (95)
T TIGR00853 23 MNKAAEEYGVPVKIAAG----SYGAAGEKLDDADVVLLAPQVA 61 (95)
T ss_pred HHHHHHHCCCcEEEEEe----cHHHHHhhcCCCCEEEECchHH
Confidence 46788999999876432 2234445556889999985444
No 477
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=25.38 E-value=1.8e+02 Score=24.01 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHhhhcCCCCeEEEEEeeCCCC-C--C---Ch-hHHHHHHhCCCCEEE
Q 021895 144 DFLYGWQEGKLPVEITCVISNHDR-G--P---NS-HVIRFLERHGIPYHY 186 (306)
Q Consensus 144 ~ll~~~~~g~l~~~I~~Visn~~~-~--~---~~-~~~~~A~~~gIp~~~ 186 (306)
++++.++.| +|..||..+++ + + +. ..++.|-+++||+..
T Consensus 61 ~i~~~i~~g----~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 61 QIGALIAEG----EIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred HHHHHHHcC----ceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 345555566 67777766552 2 1 12 456779999999976
No 478
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=25.37 E-value=4.3e+02 Score=25.90 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=51.1
Q ss_pred EEeCCcchH----HHHHHhhhcCCCCeEEEEEeeCCCCC----CChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc--
Q 021895 134 LASKQEHCL----VDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (306)
Q Consensus 134 l~S~~g~~L----~~ll~~~~~g~l~~~I~~Visn~~~~----~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~-- 203 (306)
+.|-..||- ..|+...+.| +-+++||+---+ |.....+.|+++||++..++-. .+-+..++.
T Consensus 55 ~is~h~hne~~~~~~li~~l~~g----~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~----sA~~tAL~~SG 126 (275)
T COG0313 55 LISYHEHNEKEKLPKLIPLLKKG----KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGP----SALITALSASG 126 (275)
T ss_pred eecccCCcHHHHHHHHHHHHhcC----CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCc----cHHHHHHHHcC
Confidence 667666554 4455666666 466788865322 4677899999999999998732 123444443
Q ss_pred -CCcEEEEeccCCCCcCchhhhh
Q 021895 204 -NTDFLVLARYMQPVPLQKEAYL 225 (306)
Q Consensus 204 -~~D~vVlA~ym~~~~~~~~~~~ 225 (306)
..|=.+..||.-.-+-+.-.+|
T Consensus 127 l~~~~F~F~GFLP~k~~~R~~~l 149 (275)
T COG0313 127 LPSQRFLFEGFLPRKSKERRKRL 149 (275)
T ss_pred CCCCCeeEeccCCCCccHHHHHH
Confidence 4555555577664444433333
No 479
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=1.2e+02 Score=28.70 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=33.3
Q ss_pred chHHHHHHhhhcCCCCeEEEEEeeCCCCC------CChhHHHHHHhCCCCEEEeCCCC
Q 021895 140 HCLVDFLYGWQEGKLPVEITCVISNHDRG------PNSHVIRFLERHGIPYHYLCAKE 191 (306)
Q Consensus 140 ~~L~~ll~~~~~g~l~~~I~~Visn~~~~------~~~~~~~~A~~~gIp~~~~~~k~ 191 (306)
+.|...|..++.-..+.-+..+|.|+-+. +...+..||++||+++...+.+.
T Consensus 95 ~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt 152 (216)
T KOG0098|consen 95 NHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKT 152 (216)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhh
Confidence 56666555444332344456677776443 23578899999999998766543
No 480
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=25.27 E-value=5.2e+02 Score=23.51 Aligned_cols=102 Identities=7% Similarity=0.018 Sum_probs=60.4
Q ss_pred EEEcCCccc--hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeec
Q 021895 46 VFHCPDEVG--IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (306)
Q Consensus 46 TViGpDRpG--IVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~ 123 (306)
.++|.|..| +=..|-.+|.+.|..++|.-.+.. + ..+..++...+... ..
T Consensus 3 I~IgsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~--e--------------~~dYpd~a~~va~~---V~--------- 54 (171)
T PRK08622 3 IAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDF--T--------------RTHYPIFGKKVGEA---VA--------- 54 (171)
T ss_pred EEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCC--C--------------CCChHHHHHHHHHH---HH---------
Confidence 357999998 567788899999999999876421 1 23444555444432 11
Q ss_pred CCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCC-CCEEEeC
Q 021895 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLC 188 (306)
Q Consensus 124 ~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~g-Ip~~~~~ 188 (306)
...-.+=|.+.+||.|-++. ..+.|.-.++++++. +-.+.|++|+ -.+..+.
T Consensus 55 ~g~~d~GIliCGTGiG~sia-------ANKv~GIRAA~~~d~------~sA~~aR~hNnaNVL~lG 107 (171)
T PRK08622 55 SGEADLGVCICGTGVGISNA-------VNKVPGIRSALVRDM------TSALYAKEELNANVIGFG 107 (171)
T ss_pred cCCCcEEEEEcCCcHHHHHH-------HhcCCCeEEEEeCCH------HHHHHHHHhcCCcEEEEC
Confidence 11123345555555554432 245566666777664 4567888886 5555544
No 481
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.02 E-value=2.1e+02 Score=28.97 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=35.5
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc------CCcEEEEeccCCCCcCchhhhhhh-hhhhhhccCC
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ------NTDFLVLARYMQPVPLQKEAYLGY-KLLESLSSKG 237 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~------~~D~vVlA~ym~~~~~~~~~~~~~-~~~~~~~~~~ 237 (306)
.+.|++.||.+..+...++..|+|+++.++ ++|=|.+- .|.|-. ++. ++.+.++|.-
T Consensus 125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQ---lPLP~~----id~~~i~~aI~P~K 188 (364)
T PLN02616 125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQ---LPLPSH----MDEQNILNAVSIEK 188 (364)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEe---CCCCCC----CCHHHHHhccCccc
Confidence 578999999988877556666778887775 34555552 455522 222 3555555544
No 482
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=24.88 E-value=5.2e+02 Score=24.03 Aligned_cols=92 Identities=21% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhhhhcccceeeecC-C-CCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhH
Q 021895 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPD-I-DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHV 173 (306)
Q Consensus 96 ~~~~eeLreaL~~la~elgl~~~~~rl~~-~-~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~ 173 (306)
+.+.+++.+.++ +.++... .|... . .+-+||||+ +|.|.-+ +-.+.+.| .++=||+=+.-| .
T Consensus 138 ~~~~~~~~~~vk---~~l~~~~--vr~~~~~~~~i~rVAi~-~GsG~~~--~~~a~~~g-aD~~ITGd~k~h-------~ 201 (249)
T TIGR00486 138 PIESLEEVLEIK---KVLNVKP--LLVVKNGPEYVKKVAVV-SGSGLSF--IMKALREG-VDAYITGDLSHH-------T 201 (249)
T ss_pred CCCHHHHHHHHH---HHhCCCC--EEEeCCCCCceeEEEEE-cCchHHH--HHHHHHcC-CCEEEecCCchH-------H
Confidence 456666666555 4555332 34332 2 244689986 5555432 11223333 223333333333 4
Q ss_pred HHHHHhCCCCEEEeCCCCCChH--HHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENERE--EELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e--~e~~~~v~ 203 (306)
...|++.|+.+..+.+-..++- +.+.+.++
T Consensus 202 ~~~A~~~gi~li~~gH~~sE~~~~~~la~~L~ 233 (249)
T TIGR00486 202 AHLARELGLNVIDAGHYATERGGLRKLMEDLN 233 (249)
T ss_pred HHHHHHCCCEEEEcCcHHHHHHHHHHHHHHHH
Confidence 5678999998877765332221 34555554
No 483
>PRK14424 acylphosphatase; Provisional
Probab=24.87 E-value=2.7e+02 Score=22.54 Aligned_cols=61 Identities=11% Similarity=0.045 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeC
Q 021895 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn 164 (306)
--+|.....+|.++|+..+.-++.+ -+|-+.+.|+...+++++..+++|.-.+.|.-|...
T Consensus 20 VGFR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~v~~f~~~l~~gp~~a~V~~v~~~ 80 (94)
T PRK14424 20 VGFRHATVREAHALGLRGWVANLED----GTVEAMIQGPAAQIDRMLAWLRHGPPAARVTEVTFE 80 (94)
T ss_pred CchHHHHHHHHHHcCCeEEEEECCC----CCEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 3468888889999998775332222 268888888888899999998876333666655443
No 484
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=24.86 E-value=1.8e+02 Score=29.18 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 174 IRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 174 ~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
.+.|++.||.+..+...++..|+++++.++
T Consensus 108 ~K~a~~~GI~~~~~~l~~~~te~ell~~I~ 137 (345)
T PLN02897 108 IKACEETGIKSLLAELPEDCTEGQILSALR 137 (345)
T ss_pred HHHHHhcCCEEEEEECCCCCCHHHHHHHHH
Confidence 578999999998887666666778888876
No 485
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=24.52 E-value=7.7e+02 Score=25.20 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=52.2
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC--CCCeE--EEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccce
Q 021895 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKNVF--YSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (306)
Q Consensus 44 ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~--l~G~F--fMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~ 119 (306)
|+-|+|+...+...+|+.++...++=.+....+... ....| ++|+. +. -....+++.++.+.++
T Consensus 119 v~aVIG~~sS~~s~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt~---ps----d~~q~~Ai~~l~~~f~----- 186 (510)
T cd06364 119 TIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTI---PN----DEHQATAMADIIEYFR----- 186 (510)
T ss_pred eEEEECCCchhHHHHHHHHhccccccccccccCCcccCCccccCCeeEcC---CC----hHHHHHHHHHHHHHcC-----
Confidence 788999999999999999877666544432222111 12222 44552 21 2334445555655554
Q ss_pred eeecCCCCCceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEE
Q 021895 120 VRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITC 160 (306)
Q Consensus 120 ~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~ 160 (306)
| ++|+++.+... ..++.+.+..++. ..+|+.
T Consensus 187 w--------k~VaiI~~dd~yG~~~~~~~~~~~~~~--Gi~I~~ 220 (510)
T cd06364 187 W--------NWVGTIAADDDYGRPGIEKFREEAEER--DICIDF 220 (510)
T ss_pred C--------eEEEEEEecCcchHHHHHHHHHHHHHC--CcEEEE
Confidence 1 36888877653 3444554444433 344443
No 486
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=24.46 E-value=7.3e+02 Score=24.89 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhcccceeeecC
Q 021895 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (306)
Q Consensus 45 LTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l~G~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~~~~rl~~ 124 (306)
+.|.|. +..+.+++++|.+.|..+.-+.. ....+.+++.+++..++.+.
T Consensus 303 v~v~g~--~~~~~~l~~~L~elG~~~~~v~~--------------------~~~~~~~~~~l~~~~~~~~~--------- 351 (429)
T cd03466 303 AAIYGE--PDFVVAITRFVLENGMVPVLIAT--------------------GSESKKLKEKLEEDLKEYVE--------- 351 (429)
T ss_pred EEEEcC--HHHHHHHHHHHHHCCCEEEEEEe--------------------CCCChHHHHHHHHHHHhcCC---------
Q ss_pred CCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEe
Q 021895 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (306)
Q Consensus 125 ~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~ 187 (306)
.+.|...++..-+++++++ .+.-.+|++. .....|++.|||+..+
T Consensus 352 -----~~~v~~~~d~~e~~~~l~~-------~~~dliiG~s------~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 352 -----KCVILDGADFFDIESYAKE-------LKIDVLIGNS------YGRRIAEKLGIPLIRI 396 (429)
T ss_pred -----ceEEEeCCCHHHHHHHHHh-------cCCCEEEECc------hhHHHHHHcCCCEEEe
No 487
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.42 E-value=2.4e+02 Score=26.14 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=6.1
Q ss_pred HHHHhCCCCEEEe
Q 021895 175 RFLERHGIPYHYL 187 (306)
Q Consensus 175 ~~A~~~gIp~~~~ 187 (306)
+..+++|+.+.+.
T Consensus 26 ~~l~~~~~~~~~~ 38 (293)
T TIGR00147 26 MLLREEGMEIHVR 38 (293)
T ss_pred HHHHHCCCEEEEE
Confidence 3344555554443
No 488
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=24.41 E-value=4.3e+02 Score=30.51 Aligned_cols=117 Identities=25% Similarity=0.387 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEe-------eCCCCCCCh
Q 021895 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI-------SNHDRGPNS 171 (306)
Q Consensus 99 ~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Vi-------sn~~~~~~~ 171 (306)
.-+|.+.|.++++.-|+|.... ++++.-.|.||.| +-|+++|++ .+..-.+|..|| ..++||
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv---~IN~~A~clvMTT---EILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG--- 247 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDV---SINPDAPCLVMTT---EILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERG--- 247 (1041)
T ss_pred HHHHHHHhhhhhhhccceecce---eeCCCCceEEeeH---HHHHHHhcc--CcccccccceEEEEeeeeccccccc---
Confidence 4455555555544456654433 3456778999998 689999986 344446666665 344443
Q ss_pred hHHHHHHhC---CCCEEEeCCC-CCChHHHHHHHhc---CCcEEEEeccCCCCcCchhhhhhhh
Q 021895 172 HVIRFLERH---GIPYHYLCAK-ENEREEELLELVQ---NTDFLVLARYMQPVPLQKEAYLGYK 228 (306)
Q Consensus 172 ~~~~~A~~~---gIp~~~~~~k-~~~~e~e~~~~v~---~~D~vVlA~ym~~~~~~~~~~~~~~ 228 (306)
.|.+-..-+ +|++..+++- .| .+|+.++++ .-|..|+..=-||||++.--|-+-+
T Consensus 248 ~VWEE~Ii~lP~~v~~v~LSATv~N--~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~ 309 (1041)
T COG4581 248 VVWEEVIILLPDHVRFVFLSATVPN--AEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKG 309 (1041)
T ss_pred hhHHHHHHhcCCCCcEEEEeCCCCC--HHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCc
Confidence 455544444 3566666532 23 245666664 5566666667799999877666633
No 489
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=24.18 E-value=2.8e+02 Score=26.48 Aligned_cols=76 Identities=20% Similarity=0.152 Sum_probs=42.4
Q ss_pred CCceEEEEEeCC-cchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhcCC
Q 021895 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (306)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~~~ 205 (306)
...||.|++.|. |..+...|.+ +.++|+.+ ++. ....+.++..|..+.. .+++.+.+++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~-----~Ga~V~v~--~r~----~~~~~~~~~~G~~~~~--------~~~l~~~l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA-----LGANVTVG--ARK----SAHLARITEMGLSPFH--------LSELAEEVGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----CCCEEEEE--ECC----HHHHHHHHHcCCeeec--------HHHHHHHhCCC
Confidence 356999999876 2333333332 23555433 331 1235677777754322 13455667799
Q ss_pred cEEEEeccCCCCcCchhhh
Q 021895 206 DFLVLARYMQPVPLQKEAY 224 (306)
Q Consensus 206 D~vVlA~ym~~~~~~~~~~ 224 (306)
|+|+.+ -|.++..+..
T Consensus 212 DiVI~t---~p~~~i~~~~ 227 (296)
T PRK08306 212 DIIFNT---IPALVLTKEV 227 (296)
T ss_pred CEEEEC---CChhhhhHHH
Confidence 999987 2555444433
No 490
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.15 E-value=3.1e+02 Score=27.57 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=28.4
Q ss_pred CcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 021895 138 QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (306)
Q Consensus 138 ~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp~~~~~~ 189 (306)
.|+.+.++-+. + .++...|++.. ....+..+.+++|||+.+.+.
T Consensus 211 ggt~leei~~~---~--~A~lniv~~~~---~~~~a~~Lee~~GiP~~~~~~ 254 (417)
T cd01966 211 GGTTLEDIRQM---G--RSAATLAIGES---MRKAAEALEERTGVPYYVFPS 254 (417)
T ss_pred CCCcHHHHHhh---c--cCeEEEEECHH---HHHHHHHHHHHHCCCeeecCC
Confidence 46778887654 2 25666666432 223456667899999988763
No 491
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=24.08 E-value=1.5e+02 Score=24.83 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=32.9
Q ss_pred EEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCC---hhHHHHHHhCCCCEEEeCCCCCChHHHHHHHhc
Q 021895 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (306)
Q Consensus 134 l~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~---~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~v~ 203 (306)
+++|...+ +.+++.|+ +-+||--.|-.++ ..+..+|+.++||+.++..+ +++-..+.
T Consensus 27 l~~G~~~v----~kaikkgk----a~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk-----~eLG~a~G 86 (117)
T TIGR03677 27 IKKGTNEV----TKAVERGI----AKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK-----EDLGAAAG 86 (117)
T ss_pred EeEcHHHH----HHHHHcCC----ccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH-----HHHHHHhC
Confidence 55565334 44555563 3333333333232 46788899999998886532 35666665
No 492
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=24.03 E-value=4.8e+02 Score=24.02 Aligned_cols=88 Identities=9% Similarity=0.109 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhhcccce-eeecCCCCCceEEEEEeCCc-chHHHHHHhhhc--CCCCeEEEEEeeCCCCCCChhHHH
Q 021895 100 EQMDEDFFKLSKMFNAMRSV-VRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQE--GKLPVEITCVISNHDRGPNSHVIR 175 (306)
Q Consensus 100 eeLreaL~~la~elgl~~~~-~rl~~~~~~~riavl~S~~g-~~L~~ll~~~~~--g~l~~~I~~Visn~~~~~~~~~~~ 175 (306)
++-++...+.++++|-..+. .+-....++..|+++..... .-...+++++++ -+.+.++....++.+.......++
T Consensus 30 ~~tr~~V~~~a~elgY~pn~~a~~l~~~~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 109 (341)
T PRK10703 30 EETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLS 109 (341)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHhhCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH
Confidence 45577788888888732210 00012234457888886643 333444444322 122345443333322111123455
Q ss_pred HHHhCCCCEEEe
Q 021895 176 FLERHGIPYHYL 187 (306)
Q Consensus 176 ~A~~~gIp~~~~ 187 (306)
.+...++--..+
T Consensus 110 ~l~~~~vdgiii 121 (341)
T PRK10703 110 MLAQKRVDGLLV 121 (341)
T ss_pred HHHHcCCCEEEE
Confidence 566666665444
No 493
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=23.97 E-value=2.4e+02 Score=27.35 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=37.8
Q ss_pred eEEEEEeCCc--chHHHHHHhhhcCCCCeEEEEEeeCCCCCC---ChhHHHHHHhCCC-CEEEeCC
Q 021895 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGI-PYHYLCA 189 (306)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~g~l~~~I~~Visn~~~~~---~~~~~~~A~~~gI-p~~~~~~ 189 (306)
||+|..||.- +.|..++... .| .++.||..|+.-.+ ...+.++|+++|+ |+++++.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~-lG---~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~ 62 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA-IG---DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDA 62 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH-hC---CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Confidence 6889999974 4555555432 23 46888888874322 1357788888886 9999874
No 494
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=23.83 E-value=7.1e+02 Score=24.55 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhhhhcccceeeecCCCCCceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEeeCC
Q 021895 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNH 165 (306)
Q Consensus 97 ~~~eeLreaL~~la~elgl~~~~~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Visn~ 165 (306)
+..+.+++.++.+.+..|. ..-+..-||+-++|+. .+|.+|++.++.-. .--++||||-
T Consensus 57 i~~~~I~~~~~~~~~~~g~--------ea~~pd~vtis~~GEPTLy~~L~elI~~~k~~g--~~~tflvTNg 118 (296)
T COG0731 57 IVEESILEELKLLLGYKGD--------EATEPDHVTISLSGEPTLYPNLGELIEEIKKRG--KKTTFLVTNG 118 (296)
T ss_pred ecHHHHHHHHHHHhccccc--------ccCCCCEEEEeCCCCcccccCHHHHHHHHHhcC--CceEEEEeCC
Confidence 3567888888877655541 1223446888888875 68999998876431 1367888886
No 495
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=23.82 E-value=7.8e+02 Score=25.04 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHhcCCcEEEEeccCCCCcCchhhhhhhhhhh--------hhccCCCccccccccCCHhHHhhcCCC-eeEeCCCCCC
Q 021895 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLE--------SLSSKGSLTSYFNMILSGKFLRSYGKD-VINIHHGLLP 268 (306)
Q Consensus 198 ~~~~v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~il~~~~l~~~~~~-iINiHpsLLP 268 (306)
+.+.++++|+|..-.|.. ...+.||+-++.-.+ ...+ --...+..--++.+.++....+ .|=.|| ||
T Consensus 256 ~~eav~~aDvVYtd~W~s-m~~~~er~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~v~~elm~~a~~~~ai~MHc--LP 331 (395)
T PRK07200 256 MEEAFKDADIVYPKSWAP-YKVMEERTELYRAGDHEGIKALEKELL-AQNAQHKDWHCTEEMMKLTKDGKALYMHC--LP 331 (395)
T ss_pred HHHHhCCCCEEEEcCeee-cccccccccccccccchhhhhhhhhhh-HHHHHccCCCcCHHHHhccCCCCcEEECC--CC
Confidence 345566899999998853 234566653331110 0000 0011223335889999887664 888998 78
Q ss_pred CCC
Q 021895 269 SFK 271 (306)
Q Consensus 269 ~f~ 271 (306)
+++
T Consensus 332 a~r 334 (395)
T PRK07200 332 ADI 334 (395)
T ss_pred CCC
Confidence 873
No 496
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=23.79 E-value=6.9e+02 Score=24.39 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=56.8
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC--CC--eEEEEEEEEeCCCCCCHHHHHHHHHHHHhhhhccc
Q 021895 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK--KN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (306)
Q Consensus 42 k~ILTViGpDRpGIVAaVS~~LAe~G~NIlD~sQ~id~l--~G--~FfMrmeVdv~~~~~~~eeLreaL~~la~elgl~~ 117 (306)
.-|+-|+|+-..+...+++.++.+.++=.+.-..+.... .. .++.|+. +. + .....++.++.+.++
T Consensus 102 ~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~~fR~~---p~---d-~~~~~a~~~~l~~~~--- 171 (452)
T cd06362 102 KPVAGVIGASYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDYFSRTV---PP---D-SFQAQAMVDIVKAFN--- 171 (452)
T ss_pred CCeEEEECCCCCchHHHHHHHhccccCcccccccCchhhccccccCCEEEec---CC---h-HHHHHHHHHHHHHCC---
Confidence 458899999999999999998887776555432221111 11 2444542 21 2 234455555555553
Q ss_pred ceeeecCCCCCceEEEEEeCCc---chHHHHHHhhhcCCCCeEEEEEe
Q 021895 118 SVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVI 162 (306)
Q Consensus 118 ~~~rl~~~~~~~riavl~S~~g---~~L~~ll~~~~~g~l~~~I~~Vi 162 (306)
| .||+++.+... ..++++...+++- ..+|+...
T Consensus 172 --w--------~~vaii~~~~~~G~~~~~~~~~~~~~~--gi~i~~~~ 207 (452)
T cd06362 172 --W--------TYVSTVASEGNYGEKGIEAFEKLAAER--GICIAGSE 207 (452)
T ss_pred --C--------cEEEEEEeCCHHHHHHHHHHHHHHHHC--CeeEEEEE
Confidence 2 37999988753 3445555555443 34555443
No 497
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=23.72 E-value=2.5e+02 Score=23.13 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=40.1
Q ss_pred EEEEEeCCc-chHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHh-CCCCEEEeCCCC-CChHHHHHHHhc--CC
Q 021895 131 VAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER-HGIPYHYLCAKE-NEREEELLELVQ--NT 205 (306)
Q Consensus 131 iavl~S~~g-~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~-~gIp~~~~~~k~-~~~e~e~~~~v~--~~ 205 (306)
||.+++... .-+.++.....+---..+|.+.-. -.++.++ +||++..+ .-+ ...++++.+++. +.
T Consensus 2 ~~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT~g---------Ta~~L~~~~Gi~v~~v-k~~~~~g~~~i~~~i~~g~i 71 (115)
T cd01422 2 IALIAHDNKKEDLVEFVKQHQELLSRHRLVATGT---------TGLLIQEATGLTVNRM-KSGPLGGDQQIGALIAEGEI 71 (115)
T ss_pred EeEEecccchHHHHHHHHHHHHHhcCCEEEEech---------HHHHHHHhhCCcEEEE-ecCCCCchhHHHHHHHcCce
Confidence 566666554 344455444322100467654322 2456667 89999887 211 122356888887 78
Q ss_pred cEEEEe
Q 021895 206 DFLVLA 211 (306)
Q Consensus 206 D~vVlA 211 (306)
|+|+--
T Consensus 72 ~~VInt 77 (115)
T cd01422 72 DAVIFF 77 (115)
T ss_pred eEEEEc
Confidence 988875
No 498
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=23.70 E-value=5.1e+02 Score=24.84 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=47.7
Q ss_pred CceEEEEEeCCcchHHHHHHhhhcCCCCeEEEEEeeCCCCCCChhHHHHHHhCCCC---EEEeCCCCCChH-HHHHHHhc
Q 021895 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP---YHYLCAKENERE-EELLELVQ 203 (306)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~g~l~~~I~~Visn~~~~~~~~~~~~A~~~gIp---~~~~~~k~~~~e-~e~~~~v~ 203 (306)
++||+|-...+.+.|++.....++|- ++++. |.++ ....+.++++|+. +.+++..+.... ..-.++++
T Consensus 13 ~~ri~~~~~~d~~vl~A~~~~~~~~~--~~~iL-vG~~-----~~I~~~~~~~~l~~~~ieIi~~~~~~~s~~~a~~lv~ 84 (294)
T TIGR02706 13 MKTVAVAVAQDEPVLEAVKEAKEHGI--ARAIL-VGDE-----EKINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLVS 84 (294)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHCCC--ceEEE-ECCH-----HHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHH
Confidence 56899988777788888877666552 45543 3443 2466778888763 333432221111 23355665
Q ss_pred --CCcEEEEecc
Q 021895 204 --NTDFLVLARY 213 (306)
Q Consensus 204 --~~D~vVlA~y 213 (306)
++|.+|-++.
T Consensus 85 ~G~aD~~vsg~~ 96 (294)
T TIGR02706 85 TGKADMLMKGLV 96 (294)
T ss_pred CCCCCEEEeCCc
Confidence 8999998873
No 499
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=23.58 E-value=99 Score=31.41 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=54.1
Q ss_pred ceEEEEEeCCcc---hHHHHHHhhhcC-CCC-eEEEEEeeCCCCCC--ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 021895 129 YKVAVLASKQEH---CLVDFLYGWQEG-KLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (306)
Q Consensus 129 ~riavl~S~~g~---~L~~ll~~~~~g-~l~-~~I~~Visn~~~~~--~~~~~~~A~~~gIp~~~~~~k~~~~e~e~~~~ 201 (306)
+||+|++-|+.- -+.+|+. .. +|+ .+|+++=-+.+|.. ..-+.+.++++|.+..+... ..++ +.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~---~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~t--tD~~----~A 71 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLK---TPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKT--MDLE----DA 71 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHc---ChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEe--CCHH----HH
Confidence 589999999852 2333333 34 466 78877765554421 12345667888877665432 1222 45
Q ss_pred hcCCcEEEEeccCCCCcCchhhhhhhhhhhhh
Q 021895 202 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESL 233 (306)
Q Consensus 202 v~~~D~vVlA~ym~~~~~~~~~~~~~~~~~~~ 233 (306)
++.+|||+.. +| |--.+-|-+|.|+|...
T Consensus 72 l~gADfVi~~--ir-vGg~~~r~~De~Iplk~ 100 (425)
T cd05197 72 IIDADFVINQ--FR-VGGLTYREKDEQIPLKY 100 (425)
T ss_pred hCCCCEEEEe--ee-cCChHHHHHHHhHHHHc
Confidence 6799999875 22 22234566777655443
No 500
>PRK09492 treR trehalose repressor; Provisional
Probab=23.56 E-value=5.6e+02 Score=23.24 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=22.1
Q ss_pred HHHHHHhCCCCEEEeCCCCC-ChHHHHHHHhc--CCcEEEEecc
Q 021895 173 VIRFLERHGIPYHYLCAKEN-EREEELLELVQ--NTDFLVLARY 213 (306)
Q Consensus 173 ~~~~A~~~gIp~~~~~~k~~-~~e~e~~~~v~--~~D~vVlA~y 213 (306)
+.+.++++|.-+..+....+ ..+.+.++.+. ++|-+++.+.
T Consensus 84 i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 84 MLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred HHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34566777766655443221 22334444443 6887777653
Done!