BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021896
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 119 VQRVTADCLACDKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGVFII 178
           VQ  +   L  D + WRKYGQK +KG              GC  RK VER++ DP   + 
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVT 66

Query: 179 TYGAEHNHGHP 189
           TY  +HNH  P
Sbjct: 67  TYEGKHNHDLP 77


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 130 DKWAWRKYGQKPIKGXXXXXXXXXXXXXKGCLARKQVERSSADPGVFIITYGAEHNHGHP 189
           D + WRKYGQK +KG              GC  +K VERSS D  + I TY  +H+H  P
Sbjct: 16  DGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74


>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
           Peptoniphilus Asaccharolyticus
 pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
           Peptoniphilus Asaccharolyticus
          Length = 421

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 280 FPDHNINMSADDNSWFIDESVTLNG 304
            P  ++N +    SWF+DE V LNG
Sbjct: 142 IPAPDVNTNGQIMSWFVDEYVKLNG 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,151,098
Number of Sequences: 62578
Number of extensions: 278736
Number of successful extensions: 441
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 5
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)