Query 021896
Match_columns 306
No_of_seqs 168 out of 733
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:57:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 5.9E-35 2E-39 227.4 6.4 74 116-190 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.2E-34 4E-39 226.8 4.6 73 117-190 6-78 (78)
3 2rpr_A Flywch-type zinc finger 84.3 0.35 1.2E-05 36.7 1.4 50 127-189 23-74 (87)
4 1cz6_A Protein (androctonin); 29.6 16 0.00056 22.9 0.7 8 150-157 16-23 (26)
5 1xiw_B T-cell surface glycopro 21.8 15 0.00051 27.7 -0.6 27 129-155 17-53 (79)
6 1xiw_A T-cell surface glycopro 10.7 52 0.0018 26.7 -0.2 27 129-155 33-78 (105)
7 3kgb_A Thymidylate synthase 1/ 9.7 35 0.0012 32.1 -1.8 11 130-140 114-124 (294)
8 3ed7_A Tsase, TS, thymidylate 9.0 35 0.0012 32.1 -2.0 11 130-140 117-127 (295)
9 3kp1_A D-ornithine aminomutase 8.6 82 0.0028 33.3 0.3 51 128-181 28-82 (763)
10 1odh_A MGCM1; transcription fa 8.1 3E+02 0.01 24.3 3.5 38 151-191 122-159 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=5.9e-35 Score=227.42 Aligned_cols=74 Identities=54% Similarity=0.958 Sum_probs=68.3
Q ss_pred ceEEEeecccCCCCCCccccccCcccCCCCCCCCCceecCCCCCCccccceeeccCCCCeEEEEeCcCCCCCCCC
Q 021896 116 KRVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPT 190 (306)
Q Consensus 116 k~vv~~v~~~~l~~DGY~WRKYGQK~IKGs~~PRsYYRCs~~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~P~ 190 (306)
+.++++....++.+|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 34666666678889999999999999999999999999997 899999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.2e-34 Score=226.76 Aligned_cols=73 Identities=49% Similarity=0.939 Sum_probs=65.6
Q ss_pred eEEEeecccCCCCCCccccccCcccCCCCCCCCCceecCCCCCCccccceeeccCCCCeEEEEeCcCCCCCCCC
Q 021896 117 RVVQRVTADCLACDKWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPT 190 (306)
Q Consensus 117 ~vv~~v~~~~l~~DGY~WRKYGQK~IKGs~~PRsYYRCs~~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~P~ 190 (306)
.++++....++.+|||+|||||||.|||++|||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 6 ~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 6 SGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp --CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred EEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 3455555567789999999999999999999999999998 899999999999999999999999999999884
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=84.32 E-value=0.35 Score=36.71 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=31.9
Q ss_pred CCCCCccccccCcccCCCCCCCCCceecCC--CCCCccccceeeccCCCCeEEEEeCcCCCCCCC
Q 021896 127 LACDKWAWRKYGQKPIKGSPYPRSYYRCSS--SKGCLARKQVERSSADPGVFIITYGAEHNHGHP 189 (306)
Q Consensus 127 l~~DGY~WRKYGQK~IKGs~~PRsYYRCs~--~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~P 189 (306)
|.-|||.-++--+. ..+.|.+|+. ..+|.|+-.... + . +.-.+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~~------~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKAA------GEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEEC------SSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCC
T ss_pred EEECCEEEEeeecC------CCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCc
Confidence 44589888753221 2367999995 248999854432 1 1 235688999754
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=29.63 E-value=16 Score=22.89 Aligned_cols=8 Identities=38% Similarity=1.335 Sum_probs=6.5
Q ss_pred CceecCCC
Q 021896 150 SYYRCSSS 157 (306)
Q Consensus 150 sYYRCs~~ 157 (306)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 49999973
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=21.76 E-value=15 Score=27.69 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=19.5
Q ss_pred CCCccccccCccc--------CC--CCCCCCCceecC
Q 021896 129 CDKWAWRKYGQKP--------IK--GSPYPRSYYRCS 155 (306)
Q Consensus 129 ~DGY~WRKYGQK~--------IK--Gs~~PRsYYRCs 155 (306)
..++.|.|-|... +. ...-||+||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5679999988642 22 335599999995
No 6
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=10.69 E-value=52 Score=26.72 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCCccccccCccc----------------CCCCCC---CCCceecC
Q 021896 129 CDKWAWRKYGQKP----------------IKGSPY---PRSYYRCS 155 (306)
Q Consensus 129 ~DGY~WRKYGQK~----------------IKGs~~---PRsYYRCs 155 (306)
.+-..|-|-|+.. +.++-. ||+||.|.
T Consensus 33 ~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~ 78 (105)
T 1xiw_A 33 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78 (105)
T ss_dssp TSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEE
T ss_pred CCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEc
Confidence 3559999999652 335533 89999996
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=9.68 E-value=35 Score=32.11 Aligned_cols=11 Identities=27% Similarity=1.005 Sum_probs=8.8
Q ss_pred CCccccccCcc
Q 021896 130 DKWAWRKYGQK 140 (306)
Q Consensus 130 DGY~WRKYGQK 140 (306)
=|++||.+|.+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 36899999864
No 8
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=9.05 E-value=35 Score=32.12 Aligned_cols=11 Identities=27% Similarity=0.960 Sum_probs=8.9
Q ss_pred CCccccccCcc
Q 021896 130 DKWAWRKYGQK 140 (306)
Q Consensus 130 DGY~WRKYGQK 140 (306)
=|++||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 47899999865
No 9
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=8.58 E-value=82 Score=33.31 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=29.0
Q ss_pred CCCCccccccCcccCCCCCCCCCceecCC----CCCCccccceeeccCCCCeEEEEeC
Q 021896 128 ACDKWAWRKYGQKPIKGSPYPRSYYRCSS----SKGCLARKQVERSSADPGVFIITYG 181 (306)
Q Consensus 128 ~~DGY~WRKYGQK~IKGs~~PRsYYRCs~----~~gC~AkK~Vers~~D~~~~~vtY~ 181 (306)
---||.|||--.... --|=.|+.|+. +-.-|+-|.+.....-|.-++++-.
T Consensus 28 ~r~gw~wr~~~~~~~---~~~~~y~~~s~~l~~~~~lp~~~~~~~~~~~p~~~i~~~v 82 (763)
T 3kp1_A 28 KRRGWTWRQPAENLQ---MGPFIYKDASTPLENSVALPSAKYFGDIDPQPLPVITTEI 82 (763)
T ss_dssp SCCSCCCCCBCTTEE---ETTEEESSEECCCSSCCCCGGGGGGTTCCCEESSEEEEEC
T ss_pred ccCCccccccCCCCC---cCCcchhhhchhhhcCCCCchHHHHhhcCCCCCCEEEEEE
Confidence 357999997322211 23446888884 3456777887765333344444433
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=8.08 E-value=3e+02 Score=24.27 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred ceecCCCCCCccccceeeccCCCCeEEEEeCcCCCCCCCCC
Q 021896 151 YYRCSSSKGCLARKQVERSSADPGVFIITYGAEHNHGHPTR 191 (306)
Q Consensus 151 YYRCs~~~gC~AkK~Vers~~D~~~~~vtY~GeHnH~~P~~ 191 (306)
-+.|.-.-|-||.- .-|- ++..+..--+|.|+|+.|..
T Consensus 122 ~~~Crgh~GyPVTh-FWrh--~~~~ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 122 LIPCRGHGGFPVTN-FWRH--DGRFIFFQSKGEHDHPRPET 159 (174)
T ss_dssp EECCCTBTTBCCEE-EEEE--CSSBEEEEEECCCCSCCCCC
T ss_pred eEeccCcCCCcceE-EEEE--cCCEEEEecccccCCCCCCC
Confidence 44455323444432 3332 34444455679999999964
Done!