BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021899
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/301 (79%), Positives = 262/301 (87%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ + TYMFKYD+VHGQWKH+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEY
Sbjct: 37 FITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEY 96
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
VVESTGVFT VVISAPSKDAPMFV GVNE +Y ++DIVSNASCTT
Sbjct: 97 VVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTT 156
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVIHD FGI+EGLMTTVH+ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAA
Sbjct: 157 NCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAA 216
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKVLP LNGKLTGMSFRVPTVDVSVVDLTVR+EK A+Y+ IK+AIK SEGKLKGI+
Sbjct: 217 KAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGII 276
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GY EED+VSTDFVGDSRSSIFDAKAGIAL+ NFVKLV+WYDNEWGYS+RVIDLI HMAKT
Sbjct: 277 GYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT 336
Query: 305 Q 305
Q
Sbjct: 337 Q 337
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/301 (79%), Positives = 262/301 (87%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ + TYMFKYD+VHGQWKH+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEY
Sbjct: 36 FITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEY 95
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
VVESTGVFT VVISAPSKDAPMFV GVNE +Y ++DIVSNASCTT
Sbjct: 96 VVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTT 155
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVIHD FGI+EGLMTTVH+ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAA
Sbjct: 156 NCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAA 215
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKVLP LNGKLTGMSFRVPTVDVSVVDLTVR+EK A+Y+ IK+AIK SEGKLKGI+
Sbjct: 216 KAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGII 275
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GY EED+VSTDFVGDSRSSIFDAKAGIAL+ NFVKLV+WYDNEWGYS+RVIDLI HMAKT
Sbjct: 276 GYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT 335
Query: 305 Q 305
Q
Sbjct: 336 Q 336
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/302 (65%), Positives = 237/302 (78%), Gaps = 2/302 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ + YMFKYDS HG +K E+KV+D ++ G+K + VF PE IPW+K GAEY
Sbjct: 33 FIALEYMVYMFKYDSTHGMFK-GEVKVEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEY 90
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
+VESTGVFT V+ISAPS DAPMFV GVN ++Y ++ +VSNASCTT
Sbjct: 91 IVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASCTT 150
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP+AKV+H+ F IVEGLMTTVH++TATQKTVDGPS KDWRGGR A+ NIIPSSTGAA
Sbjct: 151 NCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAA 210
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P L+GKLTGM+FRVPT +VSVVDLTVRL KE +Y++IK A+K SEG L+G+L
Sbjct: 211 KAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGVL 270
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE+DVVS DF GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RVIDLI HM K
Sbjct: 271 GYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKV 330
Query: 305 QA 306
+
Sbjct: 331 DS 332
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/302 (65%), Positives = 238/302 (78%), Gaps = 2/302 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ + YMFKYDS HG +K E+K++D ++ G+K + VF PE IPW+K GAEY
Sbjct: 34 FIALEYMVYMFKYDSTHGVFK-GEVKMEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEY 91
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
+VESTGVFT VVISAPS DAPMFV GVN ++Y ++ +VSNASCTT
Sbjct: 92 IVESTGVFTTIEKASAHFKGGAKKVVISAPSADAPMFVCGVNLEKYSKDMTVVSNASCTT 151
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP+AKV+H+ F IVEGLMTTVH++TATQKTVDGPS KDWRGGR A+ NIIPSSTGAA
Sbjct: 152 NCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAA 211
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P L+GKLTGM+FRVPT DVSVVDLTVRL KE +Y++IK A+K SEG L+G L
Sbjct: 212 KAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFL 271
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE+DVVS+DF+GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RVIDL+ HM K
Sbjct: 272 GYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKV 331
Query: 305 QA 306
+
Sbjct: 332 DS 333
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/302 (65%), Positives = 238/302 (78%), Gaps = 2/302 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ + YMFKYDS HG +K E+K++D ++ G+K + VF PE IPW+K GAEY
Sbjct: 33 FIALEYMVYMFKYDSTHGVFK-GEVKMEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEY 90
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
+VESTGVFT VVISAPS DAPMFV GVN ++Y ++ +VSNASCTT
Sbjct: 91 IVESTGVFTTIEKASAHFKGGAKKVVISAPSADAPMFVCGVNLEKYSKDMTVVSNASCTT 150
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP+AKV+H+ F IVEGLMTTVH++TATQKTVDGPS KDWRGGR A+ NIIPSSTGAA
Sbjct: 151 NCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAA 210
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P L+GKLTGM+FRVPT DVSVVDLTVRL KE +Y++IK A+K SEG L+G L
Sbjct: 211 KAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFL 270
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE+DVVS+DF+GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RVIDL+ HM K
Sbjct: 271 GYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKV 330
Query: 305 QA 306
+
Sbjct: 331 DS 332
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/302 (65%), Positives = 236/302 (78%), Gaps = 2/302 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ + YMFKYDS HG +K E+K +D ++ G+K + VF PE IPW+K GAEY
Sbjct: 33 FIALEYMVYMFKYDSTHGMFK-GEVKAEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEY 90
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
+VESTGVFT V+ISAPS DAPMFV GVN ++Y ++ +VSNASCTT
Sbjct: 91 IVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASCTT 150
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP+AKV+H+ F IVEGLMTTVH++TATQKTVDGPS KDWRGGR A+ NIIPSSTGAA
Sbjct: 151 NCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAA 210
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P L+GKLTGM+FRVPT +VSVVDLTVRL KE +Y++IK A+K SEG L+G+L
Sbjct: 211 KAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVL 270
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE+DVVS DF GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RVIDLI HM K
Sbjct: 271 GYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKV 330
Query: 305 QA 306
+
Sbjct: 331 DS 332
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/302 (65%), Positives = 235/302 (77%), Gaps = 2/302 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ + YMFKYDS HG +K E+K +D ++ G+K + VF PE IPW+K GAEY
Sbjct: 33 FIALEYMVYMFKYDSTHGMFK-GEVKAEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEY 90
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
+VESTGVFT V+ISAPS DAPMFV GVN ++Y ++ +VSNAS TT
Sbjct: 91 IVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASXTT 150
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP+AKV+H+ F IVEGLMTTVH++TATQKTVDGPS KDWRGGR A+ NIIPSSTGAA
Sbjct: 151 NCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAA 210
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P L+GKLTGM+FRVPT +VSVVDLTVRL KE +Y++IK A+K SEG L+G+L
Sbjct: 211 KAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVL 270
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE+DVVS DF GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RVIDLI HM K
Sbjct: 271 GYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKV 330
Query: 305 QA 306
+
Sbjct: 331 DS 332
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/301 (63%), Positives = 231/301 (76%), Gaps = 2/301 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ ++N YMF+YDS HG++ H +K ++ K ++ G P+ +F R+P +I W GAEY
Sbjct: 40 FIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEY 97
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
VVESTGVFT V+ISAPS DAPMFV+GVN ++Y L I+SNASCTT
Sbjct: 98 VVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTT 157
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A NIIP+STGAA
Sbjct: 158 NCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAA 217
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P LNGKLTGM+FRVPT +VSVVDLT RLEK A Y++IK +K+ SEG LKGIL
Sbjct: 218 KAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGIL 277
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE VVS+DF D+ SS FDA AGIAL+ +FVKL+SWYDNE+GYS+RV+DL+ HMA
Sbjct: 278 GYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASK 337
Query: 305 Q 305
+
Sbjct: 338 E 338
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/301 (63%), Positives = 231/301 (76%), Gaps = 2/301 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ ++N YMF+YDS HG++ H +K ++ K ++ G P+ +F R+P +I W GAEY
Sbjct: 37 FIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEY 94
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
VVESTGVFT V+ISAPS DAPMFV+GVN ++Y L I+SNASCTT
Sbjct: 95 VVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTT 154
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A NIIP+STGAA
Sbjct: 155 NCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAA 214
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P LNGKLTGM+FRVPT +VSVVDLT RLEK A Y++IK +K+ SEG LKGIL
Sbjct: 215 KAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGIL 274
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE VVS+DF D+ SS FDA AGIAL+ +FVKL+SWYDNE+GYS+RV+DL+ HMA
Sbjct: 275 GYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASK 334
Query: 305 Q 305
+
Sbjct: 335 E 335
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/291 (65%), Positives = 227/291 (78%), Gaps = 2/291 (0%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
YMFKYDS HG++ E+ D+K ++ K +A + R+P +PW + + ++STGVF
Sbjct: 51 YMFKYDSTHGRYA-GEVS-HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVF 108
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK 132
VVI+APS APMFV+GVNE++Y +L IVSNASCTTNCLAPLAK
Sbjct: 109 KELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAK 168
Query: 133 VIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 192
VI+D FGI EGLMTTVHS+TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP
Sbjct: 169 VINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLP 228
Query: 193 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVV 252
L GKLTGM+FRVPTVDVSVVDLTV+L KE TY+EIK +K +EGKLKG+LGYTE+ VV
Sbjct: 229 ELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVV 288
Query: 253 STDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
S+DF+GDS SSIFDA AGI LS FVKLVSWYDNE+GYS+RV+DL+ H+AK
Sbjct: 289 SSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 339
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/291 (65%), Positives = 227/291 (78%), Gaps = 2/291 (0%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
YMFKYDS HG++ E+ D+K ++ K +A + R+P +PW + + ++STGVF
Sbjct: 43 YMFKYDSTHGRYA-GEVS-HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVF 100
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK 132
VVI+APS APMFV+GVNE++Y +L IVSNASCTTNCLAPLAK
Sbjct: 101 KELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAK 160
Query: 133 VIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 192
VI+D FGI EGLMTTVHS+TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP
Sbjct: 161 VINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLP 220
Query: 193 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVV 252
L GKLTGM+FRVPTVDVSVVDLTV+L KE TY+EIK +K +EGKLKG+LGYTE+ VV
Sbjct: 221 ELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVV 280
Query: 253 STDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
S+DF+GDS SSIFDA AGI LS FVKLVSWYDNE+GYS+RV+DL+ H+AK
Sbjct: 281 SSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/301 (63%), Positives = 231/301 (76%), Gaps = 2/301 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ +++ YMF+YDS HG++ H +K ++ K ++ G K + +F R+P I W GAEY
Sbjct: 34 FIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEY 91
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
VVESTGVFT V+ISAPS DAPMFV+GVN ++Y L IVSNAS TT
Sbjct: 92 VVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASXTT 151
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A+ NIIP+STGAA
Sbjct: 152 NCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAA 211
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P LNGKLTGM+FRVPT +VSVVDLT RLEK A Y++IK +K+ SEG LKGIL
Sbjct: 212 KAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGIL 271
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE+ VVS DF D+ SS FDA AGIAL+ +FVKL+SWYDNE+GYS+RV+DL+VHMA
Sbjct: 272 GYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASK 331
Query: 305 Q 305
+
Sbjct: 332 E 332
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/301 (63%), Positives = 228/301 (75%), Gaps = 2/301 (0%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ +++ YMF+YDS HG++ H +K +D K ++ G K + +F R+PE I W G Y
Sbjct: 36 FIDLHYMVYMFQYDSTHGKF-HGTVKAEDGKLVIDG-KAITIFQERDPENIKWGDAGTAY 93
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
VVESTGVFT +VISAPS DAPMFV+GVN +Y L I+SNASCTT
Sbjct: 94 VVESTGVFTTMEKAGAHLKGGAKRIVISAPSADAPMFVMGVNHFKYANSLKIISNASCTT 153
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVD PS K WRGGR A+ N+IP+STGAA
Sbjct: 154 NCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAA 213
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKV+P L+GKLTGM+FRVPT +VSV+DLT RLEK A Y++IK +KE SEG LKGIL
Sbjct: 214 KAVGKVIPELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGIL 273
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
GYTE++VVS DF G + SSIFDA AGI L+ FVKLVSWYDNE+GYS RV+DL+ HMA
Sbjct: 274 GYTEDEVVSDDFNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFGYSERVVDLMAHMASK 333
Query: 305 Q 305
+
Sbjct: 334 E 334
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 386 bits (991), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/298 (65%), Positives = 230/298 (77%), Gaps = 3/298 (1%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ ++ YMFKYDS HG++K E+ D L+ K VAVF ++P +PW K G +
Sbjct: 48 FISVDYAAYMFKYDSTHGKYK-GEVS-HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDI 105
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 124
V+STGVF VVI+APSK APMFVVGVNE +Y E IVSNASCTT
Sbjct: 106 AVDSTGVFKELDSAQKHIDAGAKKVVITAPSKTAPMFVVGVNEDKYNGE-KIVSNASCTT 164
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP+AK+I+D+FGI EGLMTTVHSITATQKTVDGPS KDWRGGR AS NIIPSSTGAA
Sbjct: 165 NCLAPIAKIINDEFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAA 224
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKVLP L GKLTGM+FRVPT DVSVVDLTV+L K ATY+EIK A+K+ SEGKLK ++
Sbjct: 225 KAVGKVLPELQGKLTGMAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVV 284
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
GYTE+ VVS+DF+GD+ S+IFDA AGI LS FVKLV+WYDNE+GYS+RV+DL+ H+A
Sbjct: 285 GYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 342
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/290 (63%), Positives = 223/290 (76%), Gaps = 3/290 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
YMFKYDS HG++K ++ ++ + L+ ++V+ + P++IPW G+ YVVESTGV+
Sbjct: 48 YMFKYDSTHGRYK-GSVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVY 105
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLA 131
VVISAPS DAPMFV+GVNE +Y P ++IVSNASCTTNCLAPLA
Sbjct: 106 LSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLA 165
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 191
KVIH++FGIVEGLMTTVHS TATQKTVDGPS K WR GR A NIIP+STGAAKAV KV+
Sbjct: 166 KVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVI 225
Query: 192 PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDV 251
P L GKLTGM+FRVPT DVSVVDLT RL + A Y IK A+K ++G + GIL YTE++V
Sbjct: 226 PELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEV 285
Query: 252 VSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 301
VSTDF+GD+ SSIFDAKAGIAL+ NFVKL+SWYDNE+GYS RV+DL+ +M
Sbjct: 286 VSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 335
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/290 (63%), Positives = 223/290 (76%), Gaps = 3/290 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
YMFKYDS HG++K ++ K+ + L+ + VF + P+EIPW+ G YVVE+TGV+
Sbjct: 42 YMFKYDSTHGRYK-GTVEHKNGR-LVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVY 99
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLA 131
V+++APS DAPM V+GVNEK+Y P + +VSNAS TTNCLAPLA
Sbjct: 100 LSIEAASGHISSGARRVIVTAPSPDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLA 159
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 191
KVIH++FGIVEGLMTTVH+ TATQKTVDGPS KDWRGGR A NIIPSSTGAAKAVGKV+
Sbjct: 160 KVIHERFGIVEGLMTTVHAYTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVI 219
Query: 192 PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDV 251
P LNGKLTGM+FRVPT +VSVVDLT RL + A+Y IK A+K ++G + GIL YTE+ V
Sbjct: 220 PELNGKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQV 279
Query: 252 VSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 301
VSTDF GDS SSIFDAKAGIAL+ NFVKLVSWYDNE+GYS RV+DL+ +M
Sbjct: 280 VSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 329
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/299 (62%), Positives = 228/299 (76%), Gaps = 4/299 (1%)
Query: 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
+ + YM KYDS HG++ ++VKD ++ G+K + V R+P + W + G + V
Sbjct: 35 LDADYMAYMLKYDSTHGRFD-GTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVV 92
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTT 124
E+TG+F VV++ PSKD PMFV G N +Y + DIVSNASCTT
Sbjct: 93 AEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTT 151
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVI+D FGI+EGLMTTVH+ TATQKTVDGPS KDWRGGR AS NIIPSSTGAA
Sbjct: 152 NCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAA 211
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKVLP LNGKLTGM+FRVPT +VSVVDLTVRLEK ATYE+IK A+K +EG++KG+L
Sbjct: 212 KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVL 271
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
GYTE+DVVSTDF G+ +S+FDAKAGIAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 272 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/299 (62%), Positives = 228/299 (76%), Gaps = 4/299 (1%)
Query: 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
+ + YM KYDS HG++ ++VKD ++ G+K + V R+P + W + G + V
Sbjct: 36 LDADYMAYMLKYDSTHGRFD-GTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVV 93
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTT 124
E+TG+F VV++ PSKD PMFV G N +Y + DIVSNASCTT
Sbjct: 94 AEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTT 152
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVI+D FGI+EGLMTTVH+ TATQKTVDGPS KDWRGGR AS NIIPSSTGAA
Sbjct: 153 NCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAA 212
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKVLP LNGKLTGM+FRVPT +VSVVDLTVRLEK ATYE+IK A+K +EG++KG+L
Sbjct: 213 KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVL 272
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
GYTE+DVVSTDF G+ +S+FDAKAGIAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 273 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/299 (62%), Positives = 227/299 (75%), Gaps = 4/299 (1%)
Query: 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
+ + YM KYDS HG++ ++VKD ++ G+K + V R+P + W + G + V
Sbjct: 35 LDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVV 92
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTT 124
E+TG+F VV++ PSKD PMFV G N +Y + DIVSNASCTT
Sbjct: 93 AEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTT 151
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVI+D FGI+EGLMTTVH+ TATQKTVDGPS KDWRGGR AS NIIPSSTGAA
Sbjct: 152 NCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAA 211
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKVLP LNGKLTGM+FRVPT +VSVVDLTVRLEK ATYE+IK A+K +EG++KG+L
Sbjct: 212 KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVL 271
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
GYTE+DVVSTDF G+ +S+FDAKAGIAL+ NFVKLVSWYD E GYS++V+DLI H++K
Sbjct: 272 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDTETGYSNKVLDLIAHISK 330
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/299 (62%), Positives = 227/299 (75%), Gaps = 4/299 (1%)
Query: 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
+ + YM KYDS HG++ ++VKD ++ G+K + V R+P + W + G + V
Sbjct: 36 LDADYMAYMLKYDSTHGRFD-GTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVV 93
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTT 124
E+TG+F VV++ PSKD PMFV G N +Y + DIVSNAS TT
Sbjct: 94 AEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQ-DIVSNASXTT 152
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVI+D FGI+EGLMTTVH+ TATQKTVDGPS KDWRGGR AS NIIPSSTGAA
Sbjct: 153 NCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAA 212
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKVLP LNGKLTGM+FRVPT +VSVVDLTVRLEK ATYE+IK A+K +EG++KG+L
Sbjct: 213 KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVL 272
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
GYTE+DVVSTDF G+ +S+FDAKAGIAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 273 GYTEDDVVSTDFNGEVXTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 358 bits (920), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 183/300 (61%), Positives = 220/300 (73%), Gaps = 5/300 (1%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ ++N Y+ KYDSVHGQ+ E+ D LL GEK V+VF ++P +IPW K +
Sbjct: 45 FMDLNHLCYLLKYDSVHGQFP-CEVTHAD-GFLLIGEKKVSVFAEKDPSQIPWGKCQVDV 102
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCT 123
V ESTGVF V++SAP KD P++V+G+N +Y + IVSNASCT
Sbjct: 103 VCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCT 162
Query: 124 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSST 181
TNCLAPLAKVI+D+FGIVEGLMTTVH+ TA Q VDGPS KDWR GR A NIIP+ST
Sbjct: 163 TNCLAPLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPAST 222
Query: 182 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241
GAAKAVGKVLP LNGKLTG++FRVP VSVVDL RL+K A YEE+ IK+ +EG LK
Sbjct: 223 GAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLK 282
Query: 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 301
GILGYTE++VVS DFV D+RSSIFD KAG+AL+ NF KLVSWYDNEWGYS+RV+DL VH+
Sbjct: 283 GILGYTEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHI 342
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 358 bits (919), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 183/303 (60%), Positives = 221/303 (72%), Gaps = 8/303 (2%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAE 63
+ ++ Y+ KYDSVHG + E+ KD L K V VF ++P EIPW +GA+
Sbjct: 56 FMDVEYMAYLLKYDSVHGNFNGTVEVSGKD---LCINGKVVKVFQAKDPAEIPWGASGAQ 112
Query: 64 YVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNAS 121
V ESTGVFT V+ISAP KD PM+V+GVN EY P + +++SNAS
Sbjct: 113 IVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNAS 172
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPS 179
CTTNCLAPLAK+I+DKFGIVEGLMTTVHS+TA Q TVDGPS KDWR GR A NIIP+
Sbjct: 173 CTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPA 232
Query: 180 STGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 239
STGAAKAVGKV+PALNGKLTGM+ RVPT DVSVVDLT +L K A+ EEI A+KE S G
Sbjct: 233 STGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGP 292
Query: 240 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIV 299
+KGI+GYT +DVVSTDF+G SSIFD A IAL+ +FVKL+SWYDNE GYS+R++DL V
Sbjct: 293 MKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAV 352
Query: 300 HMA 302
++A
Sbjct: 353 YVA 355
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 358 bits (919), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/300 (60%), Positives = 218/300 (72%), Gaps = 5/300 (1%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ ++N Y+ KYDSVHGQ+ + LL GEK V+VF ++P +IPW K +
Sbjct: 37 FMDLNHLCYLLKYDSVHGQFPCEVTHA--DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDV 94
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCT 123
V ESTGVF V++SAP KD P++V+G+N +Y + IVSNASCT
Sbjct: 95 VCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCT 154
Query: 124 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSST 181
TNCLAPLAKVI+D+FGIVEGLMTTVH+ TA Q VDGPS KDWR GR A NIIP+ST
Sbjct: 155 TNCLAPLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPAST 214
Query: 182 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241
GAAKAVGKVLP LNGKLTG++FRVP VSVVDL RL+K A YEE+ IK+ +EG LK
Sbjct: 215 GAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLK 274
Query: 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 301
GILGYTE++VVS DFV D+RSSIFD KAG+AL+ NF KLVSWYDNEWGYS+RV+DL VH+
Sbjct: 275 GILGYTEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHI 334
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 358 bits (918), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 183/303 (60%), Positives = 221/303 (72%), Gaps = 8/303 (2%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAE 63
+ ++ Y+ KYDSVHG + E+ KD L K V VF ++P EIPW +GA+
Sbjct: 51 FMDVEYMAYLLKYDSVHGNFNGTVEVSGKD---LCINGKVVKVFQAKDPAEIPWGASGAQ 107
Query: 64 YVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNAS 121
V ESTGVFT V+ISAP KD PM+V+GVN EY P + +++SNAS
Sbjct: 108 IVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNAS 167
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPS 179
CTTNCLAPLAK+I+DKFGIVEGLMTTVHS+TA Q TVDGPS KDWR GR A NIIP+
Sbjct: 168 CTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPA 227
Query: 180 STGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 239
STGAAKAVGKV+PALNGKLTGM+ RVPT DVSVVDLT +L K A+ EEI A+KE S G
Sbjct: 228 STGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGP 287
Query: 240 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIV 299
+KGI+GYT +DVVSTDF+G SSIFD A IAL+ +FVKL+SWYDNE GYS+R++DL V
Sbjct: 288 MKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAV 347
Query: 300 HMA 302
++A
Sbjct: 348 YVA 350
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/303 (59%), Positives = 219/303 (72%), Gaps = 8/303 (2%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAE 63
+ ++ Y+ KYDSVHG + E+ KD L K V VF ++P EIPW +GA+
Sbjct: 56 FMDVEYMAYLLKYDSVHGNFNGTVEVSGKD---LCINGKVVKVFQAKDPAEIPWGASGAQ 112
Query: 64 YVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNAS 121
V ESTGVFT V+ISAP KD PM+V+GVN EY P + +++SNAS
Sbjct: 113 IVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNAS 172
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPS 179
TTNCLAPLAK+I+DKFGIVEGLMTTVHS+TA Q TVDGPS KDWR GR A NIIP+
Sbjct: 173 STTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPA 232
Query: 180 STGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 239
STGAAKAVGKV+PALNGKLTGM+ RVPT DVSVVDLT +L K A+ EEI A+KE S G
Sbjct: 233 STGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGP 292
Query: 240 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIV 299
+KGI+GYT +DVVSTDF+G SSI D A IAL+ +FVKL+SWYDNE GYS+R++DL V
Sbjct: 293 MKGIMGYTSDDVVSTDFIGCKYSSILDKNACIALNDSFVKLISWYDNESGYSNRLVDLAV 352
Query: 300 HMA 302
++A
Sbjct: 353 YVA 355
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 340 bits (873), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 183/299 (61%), Positives = 222/299 (74%), Gaps = 4/299 (1%)
Query: 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
+ + Y KYDS HG++ ++VKD ++ G+K + V R+P + W + G + V
Sbjct: 35 LDADYXAYXLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVV 92
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTT 124
E+TG+F VV + PSKD P FV G N +Y + DIVSNASCTT
Sbjct: 93 AEATGLFLTDETARKHITAGAKKVVXTGPSKDNTPXFVKGANFDKYAGQ-DIVSNASCTT 151
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAPLAKVI+D FGI+EGL TTVH+ TATQKTVDGPS KDWRGGR AS NIIPSSTGAA
Sbjct: 152 NCLAPLAKVINDNFGIIEGLXTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAA 211
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAVGKVLP LNGKLTG +FRVPT +VSVVDLTVRLEK ATYE+IK A+K +EG+ KG+L
Sbjct: 212 KAVGKVLPELNGKLTGXAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEXKGVL 271
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
GYTE+DVVSTDF G+ +S+FDAKAGIAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 272 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/302 (57%), Positives = 217/302 (71%), Gaps = 6/302 (1%)
Query: 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEY 64
+ ++ Y+ +YDSVHG + E+ KD K L+ G K V VF + P IPW + G Y
Sbjct: 57 FMSLDYMVYLLRYDSVHGHYP-GEVSHKDGK-LIVGGKAVTVFNEKEPTAIPWGQAGVHY 114
Query: 65 VVESTGVFTXXXXXXXXXXXXXXXVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCT 123
+ ESTG+F V++SAP KD PMFV+GVN +YK IVSNASCT
Sbjct: 115 ICESTGIFLTKEKAQAHLTNGAKKVIMSAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCT 174
Query: 124 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSST 181
TNCLAPLAK++HDKFGIVEGLMTTVH++TA Q TVDGPS KDWR GR+A NIIP+ST
Sbjct: 175 TNCLAPLAKIVHDKFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRSAGVNIIPAST 234
Query: 182 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKE-ESEGKL 240
GAAKAVGK++P+LNGKLTGM+FRVP DVSVVDLT +L K A YE+I A+KE + G +
Sbjct: 235 GAAKAVGKIIPSLNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEDIVAAVKEAATSGPM 294
Query: 241 KGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVH 300
KGI+ YT+E+VVS+DFV SS+FD AGI L+ FVKLVSWYDNEWGYS+R+++L +
Sbjct: 295 KGIISYTDEEVVSSDFVHCKFSSVFDINAGIMLNDTFVKLVSWYDNEWGYSNRLVELAHY 354
Query: 301 MA 302
M+
Sbjct: 355 MS 356
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/304 (55%), Positives = 211/304 (69%), Gaps = 14/304 (4%)
Query: 13 YMFKYDSVHGQWKHNELK-------VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
Y KYDSVHG++KH+ KD+ ++ G + + V RNP ++PW K G EYV
Sbjct: 48 YQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYV 107
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCT 123
+ESTG+FT VVISAP S A FV+GVN Y P E +VSNASCT
Sbjct: 108 IESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCT 167
Query: 124 TNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG 182
TNCLAPL V + + FGI GLMTTVHS TATQKTVDG S+KDWRGGRAA+ NIIPS+TG
Sbjct: 168 TNCLAPLVHVLVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTG 227
Query: 183 AAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242
AAKAVG V+P+ GKLTGM+FRVPT DVSVVDLT ++ + +EI A+K S+ +K
Sbjct: 228 AAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKN 287
Query: 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLI 298
ILGYT+E++VS DF+ DSRSSI+D+KA + + + F K+VSWYDNEWGYS RV+DL+
Sbjct: 288 ILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLV 347
Query: 299 VHMA 302
HMA
Sbjct: 348 RHMA 351
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 323 bits (829), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/304 (54%), Positives = 210/304 (69%), Gaps = 14/304 (4%)
Query: 13 YMFKYDSVHGQWKHNELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
Y +YD+VHG++K+ K D+ ++ G + + V RNP ++PW K G EYV
Sbjct: 48 YQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYV 107
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCT 123
+ESTG+FT VVISAP S A V+GVN EY P E +VSNASCT
Sbjct: 108 IESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCT 167
Query: 124 TNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG 182
TNCLAP+ V + + FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TG
Sbjct: 168 TNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTG 227
Query: 183 AAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242
AAKAVG V+P+ GKLTGMSFRVPT DVSVVDLT ++ + +EI A+K S+ +KG
Sbjct: 228 AAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKG 287
Query: 243 ILGYTEEDVVSTDFVGDSRSSIFDAKA----GIALSKNFVKLVSWYDNEWGYSSRVIDLI 298
ILGYT+E++VS DF+ D+RSSI+D+KA + + F K+VSWYDNEWGYS RV+DL+
Sbjct: 288 ILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLV 347
Query: 299 VHMA 302
HMA
Sbjct: 348 RHMA 351
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 319 bits (817), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 164/304 (53%), Positives = 209/304 (68%), Gaps = 14/304 (4%)
Query: 13 YMFKYDSVHGQWKHNELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
Y +YD+VHG++K+ K D+ ++ G + + V RNP ++PW K G EYV
Sbjct: 48 YQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYV 107
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCT 123
+ESTG+FT VVISAP S A V+GVN EY P E +VSNAS T
Sbjct: 108 IESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXT 167
Query: 124 TNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG 182
TNCLAP+ V + + FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TG
Sbjct: 168 TNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTG 227
Query: 183 AAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242
AAKAVG V+P+ GKLTGMSFRVPT DVSVVDLT ++ + +EI A+K S+ +KG
Sbjct: 228 AAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKG 287
Query: 243 ILGYTEEDVVSTDFVGDSRSSIFDAKA----GIALSKNFVKLVSWYDNEWGYSSRVIDLI 298
ILGYT+E++VS DF+ D+RSSI+D+KA + + F K+VSWYDNEWGYS RV+DL+
Sbjct: 288 ILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLV 347
Query: 299 VHMA 302
HMA
Sbjct: 348 RHMA 351
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 211/308 (68%), Gaps = 14/308 (4%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
Y K+D+VHG+ K+ VK ++ + G + V RNP ++PW K G +YV
Sbjct: 48 YQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYV 107
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCT 123
+ESTG+FT VVISAP S A V+GVN+ EY P +VSNASCT
Sbjct: 108 IESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCT 167
Query: 124 TNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG 182
TNCLAP+ V+ + FGI GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TG
Sbjct: 168 TNCLAPIVHVLTKENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTG 227
Query: 183 AAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242
AAKAVG V+P+ GKLTGMSFRVPT DVSVVDLT R ++ + +EI AIK+ ++ +KG
Sbjct: 228 AAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKG 287
Query: 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLI 298
ILG+T+E++VS DF+ D+RSS++D+KA + + K F K+VSWYDNEW YS RV+DL+
Sbjct: 288 ILGFTDEELVSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLV 347
Query: 299 VHMAKTQA 306
+MA A
Sbjct: 348 RYMAAKDA 355
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 312 bits (800), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 211/308 (68%), Gaps = 14/308 (4%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
Y K+D+VHG+ K+ VK ++ + G + V RNP ++PW K G +YV
Sbjct: 48 YQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYV 107
Query: 66 VESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCT 123
+ESTG+FT VVISAP S A V+GVN+ EY P +VSNASCT
Sbjct: 108 IESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCT 167
Query: 124 TNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG 182
TNCLAP+ V+ + FGI GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TG
Sbjct: 168 TNCLAPIVHVLTKENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTG 227
Query: 183 AAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242
AAKAVG V+P+ GKLTGMSFRVPT DVSVVDLT R ++ + +EI AIK+ ++ +KG
Sbjct: 228 AAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKG 287
Query: 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLI 298
ILG+T+E++VS DF+ D+RSS++D+KA + + K F K+VSWYDNEW YS RV+DL+
Sbjct: 288 ILGFTDEELVSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLV 347
Query: 299 VHMAKTQA 306
+MA A
Sbjct: 348 RYMAAKDA 355
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/298 (49%), Positives = 197/298 (66%), Gaps = 5/298 (1%)
Query: 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVV 66
+ N ++ KYDSVHG+ E+ V ++ G K + V R+PE + W + G + VV
Sbjct: 36 DANTLAHLLKYDSVHGRLDA-EVSVNGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVV 93
Query: 67 ESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTT 124
ESTG FT V+ISAP+K+ + V+GVN+ +Y P+ ++SNASCTT
Sbjct: 94 ESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTT 153
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP AKV+H++FGIV G+MTTVHS T Q+ +D P KD R RAA+ +IIP++TGAA
Sbjct: 154 NCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAA 212
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAV VLP L GKL GM+ RVPT +VSVVDL LEKE T EE+ A+K +EG+LKGIL
Sbjct: 213 KAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGIL 272
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
Y+EE +VS D+ G + SS DA + + + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 273 AYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/298 (49%), Positives = 197/298 (66%), Gaps = 5/298 (1%)
Query: 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVV 66
+ N ++ KYDSVHG+ E+ V ++ G K + V R+PE + W + G + VV
Sbjct: 36 DANTLAHLLKYDSVHGRLDA-EVSVNGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVV 93
Query: 67 ESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTT 124
ESTG FT V+ISAP+K+ + V+GVN+ +Y P+ ++SNASCTT
Sbjct: 94 ESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTT 153
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP AKV+H++FGIV G+MTTVHS T Q+ +D S KD R RAA+ +IIP++TGAA
Sbjct: 154 NCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAA 212
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAV VLP L GKL GM+ RVPT +VSVVDL LEKE T EE+ A+K +EG+LKGIL
Sbjct: 213 KAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGIL 272
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
Y+EE +VS D+ G + SS DA + + + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 273 AYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/296 (50%), Positives = 196/296 (66%), Gaps = 5/296 (1%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
N ++ KYDSVHG+ E+ V ++ G K + V R+PE + W + G + VVES
Sbjct: 38 NTLAHLLKYDSVHGRLDA-EVSVNGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVES 95
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNC 126
TG FT V+ISAP+K+ + V+GVN+ +Y P+ ++SNASCTTNC
Sbjct: 96 TGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNC 155
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP AKV+H++FGIV G+MTTVHS T Q+ +D S KD R RAA+ +IIP++TGAAKA
Sbjct: 156 LAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKA 214
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
V VLP L GKL GM+ RVPT +VSVVDL LEKE T EE+ A+K +EG+LKGIL Y
Sbjct: 215 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAY 274
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
+EE +VS D+ G + SS DA + + + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 275 SEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/298 (49%), Positives = 196/298 (65%), Gaps = 5/298 (1%)
Query: 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVV 66
+ N ++ KYDSVHG+ E+ V ++ G K + V R+PE + W + G + VV
Sbjct: 36 DANTLAHLLKYDSVHGRLDA-EVSVNGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVV 93
Query: 67 ESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTT 124
ESTG FT V+ISAP+K+ + V+GVN+ +Y P+ ++SNAS TT
Sbjct: 94 ESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASATT 153
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP AKV+H++FGIV G+MTTVHS T Q+ +D P KD R RAA+ +IIP++TGAA
Sbjct: 154 NCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAA 212
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAV VLP L GKL GM+ RVPT +VSVVDL LEKE T EE+ A+K +EG+LKGIL
Sbjct: 213 KAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGIL 272
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
Y+EE +VS D+ G + SS DA + + + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 273 AYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/298 (49%), Positives = 196/298 (65%), Gaps = 5/298 (1%)
Query: 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVV 66
+ N ++ KYDSVHG+ E+ V ++ G K + V R+PE + W + G + VV
Sbjct: 36 DANTLAHLLKYDSVHGRLDA-EVSVNGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVV 93
Query: 67 ESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTT 124
ESTG FT V+ISAP+K+ + V+GVN+ +Y P+ ++SNAS TT
Sbjct: 94 ESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTT 153
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 184
NCLAP AKV+H++FGIV G+MTTVHS T Q+ +D P KD R RAA+ +IIP++TGAA
Sbjct: 154 NCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAA 212
Query: 185 KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGIL 244
KAV VLP L GKL GM+ RVPT +VSVVDL LEKE T EE+ A+K +EG+LKGIL
Sbjct: 213 KAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGIL 272
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
Y+EE +VS D+ G + SS DA + + + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 273 AYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 193/293 (65%), Gaps = 6/293 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV 71
++ KYDSVH ++ KV+ E +L+ K + VF +P ++PW G ++V+ESTGV
Sbjct: 43 HLLKYDSVHKKFPG---KVEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGV 99
Query: 72 FTXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPL 130
F V+I+AP+K + V+G NE + KPE I+S ASCTTN +AP+
Sbjct: 100 FRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPI 159
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+H+KFGIV G++TTVHS T Q+ +D P KD R RAA+ NIIP++TGAAKAV V
Sbjct: 160 VKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALV 218
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
+P + GKL GM+ RVPT D S+ DLTV +EKE T EE+ +KE +EG+LKGI+GY +E
Sbjct: 219 VPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEP 278
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+VS+D +G + S IFDA + VK+ SWYDNE+GYS+RV+D + + K
Sbjct: 279 IVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLLK 331
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/297 (46%), Positives = 191/297 (64%), Gaps = 4/297 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ ++ +YDSVHG++ E++V + T+ G P+ V RNP E+PW + + +E
Sbjct: 40 VETNAHLLRYDSVHGRFP-KEVEVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALE 97
Query: 68 STGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNC 126
TG+FT V++SAP+ A + VV GVN + + ++SNASCTTNC
Sbjct: 98 CTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNC 157
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP+A+V++D GI +G MTT+HS T Q T+D KD RAA+ ++IP+STGAAKA
Sbjct: 158 LAPVAQVLNDTIGIEKGFMTTIHSYTGDQPTLD-TMHKDLYRARAAALSMIPTSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
VG VLP L GKL G++ RVPT +VSVVDLT ++E T EE+ NAI+E + G+LKGILGY
Sbjct: 217 VGLVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGY 276
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
T+E +VS DF DS SS+F + V+++SWYDNEWG+SSR+ D V + K
Sbjct: 277 TDEKLVSHDFNHDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALGK 333
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 196/299 (65%), Gaps = 11/299 (3%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDS G + + +++ +D ++ G + + + R+P+ +PWAK G + V+ESTGVF
Sbjct: 61 HLLKYDSTFGVY-NKKVESRDGAIVVDG-REIKIIAERDPKNLPWAKLGIDVVIESTGVF 118
Query: 73 TXXXXXX-----XXXXXXXXXVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNC 126
+ V+++ P+KD V+GVN+ + +L VSNASCTTNC
Sbjct: 119 SSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNC 178
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAPLAKV+H+ FGI +GLMTTVH+ T Q+ +D P D R RAA+ +IIP+STGAAKA
Sbjct: 179 LAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKA 237
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRL-EKEATYEEIKNAIKEESEG-KLKGIL 244
VG VLP L GKL G S RVP S+VDLTV+L +K+ T EEI + +++ SE +LKGIL
Sbjct: 238 VGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGIL 297
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
GYTE+ +VS+D G+S SSI D + L F K++SWYDNE+GYS+RV+DL + K
Sbjct: 298 GYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 356
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 198/301 (65%), Gaps = 14/301 (4%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDSVHG +K ++ KD+ ++ G K + VF ++P +IPW G + V+E+TGVF
Sbjct: 43 HLLKYDSVHGIFK-GSVEAKDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVF 100
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPL 130
V+I+AP+K+ + VV GVNE++Y P E +I+SNASCTTNCLAP
Sbjct: 101 RDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPC 160
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+++ FG+ +G M TVH+ T Q+ +D P KD+R RAA+ NI+P++TGAAKA+G+V
Sbjct: 161 VKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEV 219
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESE-----GK--LKG 242
+P L GKL G + RVP D S++DLTV + K ++ EE+ +E ++ GK LK
Sbjct: 220 IPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKE 279
Query: 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
IL Y E+ +VSTD VG+ S+IFDA + N V + +WYDNEWGYS R+ DL++++A
Sbjct: 280 ILQYCEDPIVSTDIVGNPHSAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLA 338
Query: 303 K 303
+
Sbjct: 339 E 339
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/290 (47%), Positives = 190/290 (65%), Gaps = 6/290 (2%)
Query: 12 TYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV 71
T++ KYDS+ G +K ++K+ D +T KP+ V R+P ++PWA+ G + V+E TGV
Sbjct: 43 THLLKYDSILGTFKA-DVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGV 101
Query: 72 FTXXXXXXXXXXXXXXXVVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLA 128
F V+I+AP+K D P +VVGVNEK+Y ++ +I+SNASCTTNCLA
Sbjct: 102 FVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLA 161
Query: 129 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVG 188
P KV+ ++ GIV+G MTT HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV
Sbjct: 162 PFVKVLDEELGIVKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVS 220
Query: 189 KVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEA-TYEEIKNAIKEESEGKLKGILGYT 247
VLP L GKL G++ RVPT +VSVVDL V +EK T E++ NA ++ + G LKG+L
Sbjct: 221 LVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVC 280
Query: 248 EEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+ +VS DF SS D+ + + + VK+V+WYDNEWGYS RV+DL
Sbjct: 281 DIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDL 330
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 244 bits (622), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 178/298 (59%), Gaps = 4/298 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ ++ +YDSVHG + V D + G + VF R+P ++PW + +E
Sbjct: 61 VETNAHLLRYDSVHGCFPGTVQVVGD--AIDIGSSLIKVFAERDPAQLPWKALDIDIALE 118
Query: 68 STGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNC 126
TG+FT V++SAPS+ A + VV GVN + E ++SNASCTTNC
Sbjct: 119 CTGIFTARDKASAHLDAGAKRVLVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNC 178
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP+A+V+H+ GI +G MTT+HS T Q +D +D RAA+ ++IP+STGAAKA
Sbjct: 179 LAPVAQVLHNTVGIEKGFMTTIHSYTGDQPVLD-TMHRDLYRARAAALSMIPTSTGAAKA 237
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
VG VLP L G L G+S RVPT +VSVVDLT ++ T EEI AI+ ++G LKGIL Y
Sbjct: 238 VGLVLPELKGLLDGVSIRVPTPNVSVVDLTFTAKRSTTIEEINTAIRTAAQGSLKGILDY 297
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
T+E +VS DF + S+IF + +++ WYDNEWG+S+R+ D V AKT
Sbjct: 298 TDEKLVSCDFNHNPHSAIFHNDQTKVIDGQLCRVLVWYDNEWGFSNRMCDTAVAFAKT 355
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 182/297 (61%), Gaps = 6/297 (2%)
Query: 11 QTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTG 70
++ +YD+ HG++ E+ V + ++ G++ + V RNP E+PW + G + V+E TG
Sbjct: 52 NAHLTQYDTAHGKFP-GEVSVDGDYLVVNGDR-IRVLANRNPAELPWGELGVDVVMECTG 109
Query: 71 VFTXXXXXXXXXXXXXXXVVISAPS-KDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLA 128
FT V+ISAP KD +V GVN K E ++SNASCTTNCLA
Sbjct: 110 FFTSKEKASAHLKGGAKKVIISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLA 169
Query: 129 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVG 188
PL K ++DK G+ GLMTT+H+ T Q D +D R R+A+ + IP+ TGAA AVG
Sbjct: 170 PLVKPLNDKIGLETGLMTTIHAYTNDQVLTD-VYHEDLRRARSATHSQIPTKTGAAAAVG 228
Query: 189 KVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTE 248
VLP LNGKL G + RVPT++VS+VDL+ +++ T E+ +KE SEG LKGILGY E
Sbjct: 229 LVLPELNGKLDGYAIRVPTINVSIVDLSFIAKRDTTAAEVNAIMKEASEGALKGILGYNE 288
Query: 249 EDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 305
+VS DF + SS FDA +S VK+ SWYDNEWG+S+R++D + +A +
Sbjct: 289 APLVSIDFNHNPASSTFDATL-TKVSGRLVKVSSWYDNEWGFSNRMLDTAIALANAK 344
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 179/291 (61%), Gaps = 3/291 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ +++ KYDS+ G + ++K + + K + V RNP +PW G + V+E
Sbjct: 39 VKQASHLLKYDSILGTFDA-DVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIE 97
Query: 68 STGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNC 126
TGVF V+I+AP K D P +VVGVNE+ Y I+SNASCTTNC
Sbjct: 98 GTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNC 157
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP KV+ KFGI++G MTT HS T Q+ +D S +D R RAA NI+P+STGAAKA
Sbjct: 158 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
V VLP L GKL G++ RVPT +VSVVDL V++ K+ EE+ A +E ++ +LKGIL
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+E +VS DF SS D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 179/291 (61%), Gaps = 3/291 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ +++ KYDS+ G + ++K + + K + V RNP +PW G + V+E
Sbjct: 39 VKQASHLLKYDSILGTFDA-DVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIE 97
Query: 68 STGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNC 126
TGVF V+I+AP K D P +VVGVNE+ Y I+SNASCTTNC
Sbjct: 98 GTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNC 157
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP KV+ KFGI++G MTT HS T Q+ +D S +D R RAA NI+P+STGAAKA
Sbjct: 158 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
V VLP L GKL G++ RVPT +VSVVDL V++ K+ EE+ A +E ++ +LKGIL
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+E +VS DF SS D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 179/291 (61%), Gaps = 3/291 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ +++ KYDS+ G + ++K + + K + V RNP +PW G + V+E
Sbjct: 39 VKQASHLLKYDSILGTFDA-DVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIE 97
Query: 68 STGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNC 126
TGVF V+I+AP K D P +VVGVNE+ Y I+SNASCTTNC
Sbjct: 98 GTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNC 157
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP KV+ KFGI++G MTT HS T Q+ +D S +D R RAA NI+P+STGAAKA
Sbjct: 158 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
V VLP L GKL G++ RVPT +VSVVDL V++ K+ EE+ A +E ++ +LKGIL
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+E +VS DF SS D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 179/291 (61%), Gaps = 3/291 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ +++ KYDS+ G + ++K + + K + V RNP +PW G + V+E
Sbjct: 39 VKQASHLLKYDSILGTFDA-DVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIE 97
Query: 68 STGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNC 126
TGVF V+I+AP K D P +VVGVNE+ Y I+SNASCTTNC
Sbjct: 98 GTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNC 157
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP KV+ KFGI++G MTT HS T Q+ +D + +D R RAA NI+P+STGAAKA
Sbjct: 158 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-AHRDLRRARAACLNIVPTSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
V VLP L GKL G++ RVPT +VSVVDL V++ K+ EE+ A +E ++ +LKGIL
Sbjct: 217 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 276
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+E +VS DF SS D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 277 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 237 bits (604), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 180/291 (61%), Gaps = 4/291 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ +++ KYDS+ G + ++K + + G K + V RNP +PW G + V+E
Sbjct: 38 VKQASHLLKYDSILGTFDA-DVKTAGDSAISVG-KVIKVVSDRNPVNLPWGDMGIDLVIE 95
Query: 68 STGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNC 126
TGVF V+I+AP K D P +VVGVNE+ Y I+SNASCTTNC
Sbjct: 96 GTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNC 155
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP KV+ KFGI++G MTT HS T Q+ +D S +D R RAA NI+P+STGAAKA
Sbjct: 156 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKA 214
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
V VLP L GKL G++ RVPT +VSVVDL V++ K+ EE+ A +E ++ +LKGIL
Sbjct: 215 VALVLPQLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADQELKGILSV 274
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+E +VS DF SS D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 275 CDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 325
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 185/288 (64%), Gaps = 6/288 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDS++ ++ E+ D+ + G K + ++P+EIPWA+ G V+ESTGVF
Sbjct: 40 HLLKYDSIYHRFP-GEVAYDDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVF 97
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPL 130
T V+I+AP+K + V+GVN + Y P I+SNASCTTN LAP+
Sbjct: 98 TDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPV 157
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+ + FG+ + LMTTVHS T Q+ +D P KD R RAA+ NIIP++TGAAKA V
Sbjct: 158 MKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALV 216
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
LP+L G+ GM+ RVPT S+ D+T L++E T EE+ A+K +EG LKGIL YTE++
Sbjct: 217 LPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDE 276
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLI 298
+V D V D SSI DAK AL N VK+ +WYDNEWGY++RV DL+
Sbjct: 277 IVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLV 323
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 182/288 (63%), Gaps = 6/288 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDS +G++ DE+ L K + ++P EIPW + G VVESTGVF
Sbjct: 40 HLLKYDSTYGRFP--GAVGYDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVF 97
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPL 130
T V+I+AP+K+ + VV GVN ++Y P + I+SNASCTTN LAP+
Sbjct: 98 TDGEKARAHLEAGAKKVIITAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPV 157
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+ FG+ + LMTTVHS T Q+ +D P KD R RAA+ NIIP++TGAAKA V
Sbjct: 158 MKVLEKAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAALNIIPTTTGAAKATALV 216
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
LP+L G+ GM+ RVPT S+ D+T L++E T EE+ A+K +EG LKGIL YTE++
Sbjct: 217 LPSLKGRFDGMALRVPTPTGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDE 276
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLI 298
+V D V D SSI D K A+ N VK+ +WYDNEWGY++RV DL+
Sbjct: 277 IVLRDIVMDPHSSIVDGKLTKAIG-NLVKVFAWYDNEWGYANRVADLV 323
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/283 (44%), Positives = 181/283 (63%), Gaps = 5/283 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYD+VHG++ +D LL K + + R+P+E+PW G E V+E+TG F
Sbjct: 45 HLIKYDTVHGKFDGTVEAFEDH--LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKF 102
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYK-PELDIVSNASCTTNCLAPL 130
V+++AP K+ + VVGVNE + + ++SNASCTTNCLAP+
Sbjct: 103 NSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPV 162
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+ ++FGI GLMTTVH+ T QK +D P KD R RA +IIP++TGAAKA+ KV
Sbjct: 163 VKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKV 221
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
LP LNGKL GM+ RVPT +VS+VDL V ++++ T E I +A K + G LKGI+ ++EE
Sbjct: 222 LPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEP 281
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSR 293
+VS DF ++ S+I D + + + VK+++WYDNEWGYS R
Sbjct: 282 LVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSRR 324
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 184/288 (63%), Gaps = 6/288 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDS++ ++ E+ D+ + G K + ++P+EIPWA+ G V+ESTGVF
Sbjct: 40 HLLKYDSIYHRFP-GEVAYDDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVF 97
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPL 130
T V+I+AP+K + V+GVN + Y P I+SNAS TTN LAP+
Sbjct: 98 TDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPV 157
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+ + FG+ + LMTTVHS T Q+ +D P KD R RAA+ NIIP++TGAAKA V
Sbjct: 158 MKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALV 216
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
LP+L G+ GM+ RVPT S+ D+T L++E T EE+ A+K +EG LKGIL YTE++
Sbjct: 217 LPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDE 276
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLI 298
+V D V D SSI DAK AL N VK+ +WYDNEWGY++RV DL+
Sbjct: 277 IVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLV 323
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 187/288 (64%), Gaps = 6/288 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ +YDSV G++ N DE ++ K + + RNP +PW + + V+ESTGVF
Sbjct: 45 HLLEYDSVLGRF--NADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVF 102
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAP 129
V+I+AP K + +V+GVN+ EY+ E ++SNASCTTNCLAP
Sbjct: 103 VTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAP 162
Query: 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 189
+AKV+HD FGI++G MTT HS T Q+ +D S +D R RAA+ NI+P++TGAAKAV
Sbjct: 163 VAKVLHDNFGIIKGTMTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVAL 221
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
V+P L GKL G++ RVPT +VSVVDL V++EK E++ +++ S+ +KGI+ Y++
Sbjct: 222 VIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDL 281
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+VS+DF G SSI D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 282 PLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDL 329
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 187/288 (64%), Gaps = 6/288 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ +YDSV G++ N DE ++ K + + RNP +PW + + V+ESTGVF
Sbjct: 45 HLLEYDSVLGRF--NADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVF 102
Query: 73 TXXXXXXXXXXXXXXXVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAP 129
V+I+AP K + +V+GVN+ EY+ E ++SNASCTTNCLAP
Sbjct: 103 VTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAP 162
Query: 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 189
+AKV+HD FGI++G MTT HS T Q+ +D S +D R RAA+ NI+P++TGAAKAV
Sbjct: 163 VAKVLHDNFGIIKGTMTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVAL 221
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
V+P L GKL G++ RVPT +VSVVDL V++EK E++ +++ S+ +KGI+ Y++
Sbjct: 222 VIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDL 281
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+VS+DF G SSI D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 282 PLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDL 329
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 6/293 (2%)
Query: 11 QTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTG 70
++ +YD+ HG++ + V ++ G+K + V RNP ++PW + V+E TG
Sbjct: 43 NAHLTRYDTAHGKFP-GTVSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTG 100
Query: 71 VFTXXXXXXXXXXXXXXXVVISAPS-KDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLA 128
FT V+ISAP D VV GVN K ++SNAS TTNCLA
Sbjct: 101 FFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASXTTNCLA 160
Query: 129 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVG 188
PL K ++DK G+ +GLMTTVH+ T Q D +D R R+A+ ++IP+ TGAA AVG
Sbjct: 161 PLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTKTGAAAAVG 219
Query: 189 KVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTE 248
VLP L+GKL G + RVPT++VS+VDL+ ++ T EE+ +K SEG+LKGIL Y
Sbjct: 220 DVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNT 279
Query: 249 EDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 301
E +VS D+ D SS DA +S VK+ SWYDNEWG+S+R++D V +
Sbjct: 280 EPLVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWYDNEWGFSNRMLDTTVAL 331
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 179/291 (61%), Gaps = 3/291 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ +++ KYDS G + ++K E + K + V RNP +PW + G + V+E
Sbjct: 40 VKQASHLLKYDSTLGIFDA-DVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIE 98
Query: 68 STGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNC 126
TGVF V+I+AP K D P +VVGVN Y + I+SNASCTTNC
Sbjct: 99 GTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNC 158
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAP KV+ KFGI++G MTT HS T Q+ +D S +D R RAA+ NI+P+STGAAKA
Sbjct: 159 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKA 217
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
V VLP L GKL G++ RVPT +VSVVDL V++ K+ EE+ A ++ +E +LKGIL
Sbjct: 218 VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDV 277
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 297
+E +VS DF S+ D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 278 CDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 328
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 179/301 (59%), Gaps = 12/301 (3%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+M ++ KYD++ G++ E++V D + G K V F + ++PW + V+E
Sbjct: 39 DMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLEC 96
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
TG +T V+ISAP+ D V N +E +VS ASCTTN L
Sbjct: 97 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL 156
Query: 128 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKA 186
AP+AKV++D FG+VEGLMTT+H+ T Q T D P K D R RAA+ NIIP+STGAAKA
Sbjct: 157 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILG 245
+GKV+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S G
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
YTE+++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 332
Query: 303 K 303
+
Sbjct: 333 E 333
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 179/301 (59%), Gaps = 12/301 (3%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+M ++ KYD++ G++ E++V D + G K V F + ++PW + V+E
Sbjct: 47 DMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLEC 104
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
TG +T V+ISAP+ D V N +E +VS ASCTTN L
Sbjct: 105 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL 164
Query: 128 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKA 186
AP+AKV++D FG+VEGLMTT+H+ T Q T D P K D R RAA+ NIIP+STGAAKA
Sbjct: 165 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 224
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILG 245
+GKV+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S G
Sbjct: 225 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 280
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
YTE+++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A
Sbjct: 281 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 340
Query: 303 K 303
+
Sbjct: 341 E 341
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 179/301 (59%), Gaps = 12/301 (3%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+M ++ KYD++ G++ E++V D + G K V F + ++PW + V+E
Sbjct: 41 DMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLEC 98
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
TG +T V+ISAP+ D V N +E +VS ASCTTN L
Sbjct: 99 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL 158
Query: 128 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKA 186
AP+AKV++D FG+VEGLMTT+H+ T Q T D P K D R RAA+ NIIP+STGAAKA
Sbjct: 159 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 218
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILG 245
+GKV+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S G
Sbjct: 219 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 274
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
YTE+++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A
Sbjct: 275 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 334
Query: 303 K 303
+
Sbjct: 335 E 335
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 179/301 (59%), Gaps = 12/301 (3%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+M ++ KYD++ G++ E++V D + G K V F + ++PW + V+E
Sbjct: 42 DMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLEC 99
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
TG +T V+ISAP+ D V N +E +VS ASCTTN L
Sbjct: 100 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL 159
Query: 128 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKA 186
AP+AKV++D FG+VEGLMTT+H+ T Q T D P K D R RAA+ NIIP+STGAAKA
Sbjct: 160 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 219
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILG 245
+GKV+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S G
Sbjct: 220 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 275
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
YTE+++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A
Sbjct: 276 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 335
Query: 303 K 303
+
Sbjct: 336 E 336
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 179/301 (59%), Gaps = 12/301 (3%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+M ++ KYD++ G++ E++V D + G K V F + ++PW + V+E
Sbjct: 39 DMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLEC 96
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
TG +T V+ISAP+ D V N +E +VS ASCTTN L
Sbjct: 97 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL 156
Query: 128 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKA 186
AP+AKV++D FG+VEGLMTT+++ T Q T D P K D R RAA+ NIIP+STGAAKA
Sbjct: 157 APVAKVLNDDFGLVEGLMTTINAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILG 245
+GKV+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S G
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
YTE+++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 332
Query: 303 K 303
+
Sbjct: 333 E 333
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 178/301 (59%), Gaps = 12/301 (3%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+M ++ KYD++ G++ E++V D + G K V F + ++PW + V+E
Sbjct: 39 DMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLEC 96
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
TG +T V+ISAP+ D V N +E +VS AS TTN L
Sbjct: 97 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSL 156
Query: 128 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKA 186
AP+AKV++D FG+VEGLMTT+H+ T Q T D P K D R RAA+ NIIP+STGAAKA
Sbjct: 157 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILG 245
+GKV+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S G
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
YTE+++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 332
Query: 303 K 303
+
Sbjct: 333 E 333
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 204 bits (519), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 178/301 (59%), Gaps = 12/301 (3%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+M ++ KYD++ G++ E++V D + G K V F + ++PW + V+E
Sbjct: 39 DMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLEC 96
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
TG +T V+ISAP+ D V N +E +VS AS TTN L
Sbjct: 97 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSL 156
Query: 128 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKA 186
AP+AKV++D FG+VEGLMTT+H+ T Q T D P K D R RAA+ NIIP+STGAAKA
Sbjct: 157 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILG 245
+GKV+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S G
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
YTE+++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 332
Query: 303 K 303
+
Sbjct: 333 E 333
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 178/301 (59%), Gaps = 12/301 (3%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+M ++ KYD++ G++ E++V D + G K V F + ++PW + V+E
Sbjct: 39 DMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLEC 96
Query: 69 TGVFTXXXXXXXXXXXXXXXVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
TG +T V+ISAP+ D V N +E +VS AS TTN L
Sbjct: 97 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSL 156
Query: 128 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKA 186
AP+AKV++D FG+VEGLMTT+++ T Q T D P K D R RAA+ NIIP+STGAAKA
Sbjct: 157 APVAKVLNDDFGLVEGLMTTINAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 216
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILG 245
+GKV+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S G
Sbjct: 217 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FG 272
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
YTE+++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A
Sbjct: 273 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 332
Query: 303 K 303
+
Sbjct: 333 E 333
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 163/293 (55%), Gaps = 7/293 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV 71
++ KYD+ HG++ +V+ E+ LF G+ + V R+ + +PW + G + V++ TGV
Sbjct: 45 HLLKYDTSHGRFA---WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV 101
Query: 72 FTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAP 129
+ V+ S P S D VV GVN+ + + E IVSNASCTTNC+ P
Sbjct: 102 YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIP 161
Query: 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 189
+ K++ D +GI G +TT+HS Q+ +D D R RAAS +IIP T A + +
Sbjct: 162 VIKLLDDAYGIESGTVTTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITR 220
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
P N + ++ RVPT++V+ +DL+V ++K E+ +++ ++G GI+ YTE
Sbjct: 221 FFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTEL 280
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
+VS DF D S+I D + +K + W DNEWG+++R++D + MA
Sbjct: 281 PLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 333
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 163/293 (55%), Gaps = 7/293 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV 71
++ KYD+ HG++ +V+ E+ LF G+ + V R+ + +PW + G + V++ TGV
Sbjct: 46 HLLKYDTSHGRFA---WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV 102
Query: 72 FTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAP 129
+ V+ S P S D VV GVN+ + + E IVSNASCTTNC+ P
Sbjct: 103 YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIP 162
Query: 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 189
+ K++ D +GI G +TT+HS Q+ +D D R RAAS +IIP T A + +
Sbjct: 163 VIKLLDDAYGIESGTVTTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITR 221
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
P N + ++ RVPT++V+ +DL+V ++K E+ +++ ++G GI+ YTE
Sbjct: 222 FFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTEL 281
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
+VS DF D S+I D + +K + W DNEWG+++R++D + MA
Sbjct: 282 PLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 161/293 (54%), Gaps = 7/293 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV 71
++ KYD+ HG++ +V+ E+ LF G+ + V R+ + +PW + G + V++ TGV
Sbjct: 46 HLLKYDTSHGRFA---WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV 102
Query: 72 FTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAP 129
+ V+ S P S D VV GVN+ + + E IVSNAS TTN + P
Sbjct: 103 YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIP 162
Query: 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 189
+ K++ D +GI G +TT+HS Q+ +D D R RAAS +IIP T A + +
Sbjct: 163 VIKLLDDAYGIESGTVTTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITR 221
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
P N + ++ RVPT++V+ +DL+V ++K E+ +++ ++G GI+ YTE
Sbjct: 222 FFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTEL 281
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
+VS DF D S+I D + +K + W DNEWG+++R++D + MA
Sbjct: 282 PLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 97 DAPMFVVGVN---EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 153
D P+ V VN + +P+ I++N +CTT P+ KV+HD+ +V ++++ +++
Sbjct: 102 DVPLVVSEVNFERDAHRRPK-GIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSG 160
Query: 154 T 154
+
Sbjct: 161 S 161
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 97 DAPMFVVGVN---EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 153
D P+ V VN + +P+ I++N +CTT P+ KV+HD+ +V ++++ +++
Sbjct: 120 DVPLVVSEVNFERDAHRRPK-GIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSG 178
Query: 154 T 154
+
Sbjct: 179 S 179
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 24/160 (15%)
Query: 99 PMFVVGVNEKEYKPELDIVSNASCTTNCLA----PLAKVIHDKFGIVE--------GLMT 146
P+ V VN ++ I++N +CTT LA PL + K IV G
Sbjct: 102 PLVVPEVNREKIFQHRGIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQAASGAGAKA 161
Query: 147 TVHSITATQKTVDGPSMKDWRGGRAASFNIIP-----SSTGAAKAVGKVLPALNG----- 196
+T T + + G + K FN+IP G + KV+ +
Sbjct: 162 MEELLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVWETHKIFGDD 221
Query: 197 --KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKE 234
+++ + RVPT+ ++V + T E + +KE
Sbjct: 222 TIRISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKE 261
>pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
pdb|3HSK|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
Length = 381
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 52/179 (29%)
Query: 96 KDAPMFVVGVNEKEYKPE-LDIVSNAS---------------CTTNC-----LAPLAKVI 134
KD P+ V VN PE +D+V N C +NC +APL ++
Sbjct: 131 KDVPLVVPIVN-----PEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLV 185
Query: 135 HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG--------AAKA 186
+KFG ++ L TT T + + G G NI+P +G K
Sbjct: 186 -EKFGPIDALTTT------TLQAISGAGFSPGVSGMDILDNIVPYISGEEDKLEWETKKI 238
Query: 187 VGKV---------LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE--ATYEEIKNAIKE 234
+G V +P K++ RVP +D +++R + E++K ++E
Sbjct: 239 LGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLRE 297
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 43/199 (21%)
Query: 116 IVSNASCTTNCLA-PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASF 174
+V N +CT ++ P+ +I + T I T + V G G SF
Sbjct: 145 LVKNPNCTAAIMSMPIKPLIE--------IATKSKIIITTLQAVSG------AGYNGISF 190
Query: 175 -----NIIPSSTGAAKAVGKVLPALNGKL------------TGMSFRVPTVDVSVVDLTV 217
NIIP G + K L LNGKL T S RVPT + + +
Sbjct: 191 MAIEGNIIPYIKGEEDKIAKELTKLNGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINI 250
Query: 218 RLEKEATYEEIKNAIKE-ESEGKLKGILGYTEEDVVSTDFVGDSRSSIFD--AKAGIALS 274
+ EEIK +K +S + K + ++ ++ D D I D A++G+A++
Sbjct: 251 VTNERINIEEIKKTLKNFKSLPQQKNLPTAPKQPIIVRDE-EDRPQPIIDVNAESGMAVT 309
Query: 275 -------KNFVKLVSWYDN 286
N ++LV DN
Sbjct: 310 VGRIRHENNVLRLVVLGDN 328
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 116 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASF 174
I++N +C+T C K I DKFG+ + T +++ A V ++ D
Sbjct: 151 IITNPNCSTICAVITLKPIXDKFGLEAVFIATXQAVSGAGYNGVPSXAILD--------- 201
Query: 175 NIIP--------SSTGAAKAVGKV----LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE 222
N+IP T + K +G + + N K++ RV +D + V+ ++
Sbjct: 202 NLIPFIKNEEEKXQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEG 261
Query: 223 ATYEEIK 229
A EEIK
Sbjct: 262 AEPEEIK 268
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 99 PMFV------VGVNEKEYKPELDIVSNASCTTNCLAPLAKVI----HDKFGIVEGLMTTV 148
PMF+ +GVNE Y + I S SC + P + + H ++ L T
Sbjct: 95 PMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSDIANLAKHSSVPVINALCDTF 154
Query: 149 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG 182
H + Q D ++ + ++A+ PSS G
Sbjct: 155 HPL---QAIADFLTIHESFASQSATHGTHPSSLG 185
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 173 SFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI 232
FN++ + +G + AV KVL L ++ + +++ +VD+ L + E+IK
Sbjct: 8 QFNVVMTCSGCSGAVNKVLTKLEPDVSKIDI---SLEKQLVDVYTTLPYDFILEKIKKTG 64
Query: 233 KEESEGK 239
KE GK
Sbjct: 65 KEVRSGK 71
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 173 SFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI 232
FN++ + +G + AV KVL L ++ + +++ +VD+ L + E+IK
Sbjct: 8 QFNVVMTCSGCSGAVNKVLTKLEPDVSKIDI---SLEKQLVDVYTTLPYDFILEKIKKTG 64
Query: 233 KEESEGK 239
KE GK
Sbjct: 65 KEVRSGK 71
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 9 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 54
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 55
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 9 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 54
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 55
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 234 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 281
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 55
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 97 DAPMFVVGVNEK---EYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 153
D P+ V VN + E++ +I++N +C+T + K I+D GI +TT S++
Sbjct: 104 DIPLVVPEVNPEAIAEFR-NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSG 162
Query: 154 TQKTVDGPSMKDWRGGRAASFNIIPSST 181
K + + G A N P+ T
Sbjct: 163 AGKA----GIDELAGQTAKLLNGYPAET 186
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 102 VVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 161
V GV+ E P L + N P KV+++ + MT V T+ +
Sbjct: 165 VWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETF--AV 222
Query: 162 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLP-ALNGKLTG-MSF-----------RVPTV 208
+ G + A+ +I+P K GK L A NG ++G +S R+P
Sbjct: 223 MFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVK 282
Query: 209 DVSVV-DLTVRLEKEATYE 226
+ V D VRL K YE
Sbjct: 283 FMRVKGDFEVRLRKGQLYE 301
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 102 VVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 161
V GV+ E P L + N P KV+++ + MT V T+ +
Sbjct: 165 VWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETF--AV 222
Query: 162 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLP-ALNGKLTG-MSF-----------RVPTV 208
+ G + A+ +I+P K GK L A NG ++G +S R+P
Sbjct: 223 MFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVK 282
Query: 209 DVSVV-DLTVRLEKEATYE 226
+ V D VRL K YE
Sbjct: 283 FMRVKGDFEVRLRKGQLYE 301
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 102 VVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 161
V GV+ E P L + N P KV+++ + MT V T+ +
Sbjct: 165 VWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETF--AV 222
Query: 162 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLP-ALNGKLTG-MSF-----------RVPTV 208
+ G + A+ +I+P K GK L A NG ++G +S R+P
Sbjct: 223 MFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVK 282
Query: 209 DVSVV-DLTVRLEKEATYE 226
+ V D VRL K YE
Sbjct: 283 FMRVKGDFEVRLRKGQLYE 301
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 102 VVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 161
V GV+ E P L + N P KV+++ + MT V T+ +
Sbjct: 165 VWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETF--AV 222
Query: 162 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLP-ALNGKLTG-MSF-----------RVPTV 208
+ G + A+ +I+P K GK L A NG ++G +S R+P
Sbjct: 223 MFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVK 282
Query: 209 DVSVV-DLTVRLEKEATYE 226
+ V D VRL K YE
Sbjct: 283 FMRVKGDFEVRLRKGQLYE 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,605,081
Number of Sequences: 62578
Number of extensions: 334149
Number of successful extensions: 1167
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 94
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)