Query 021899
Match_columns 306
No_of_seqs 221 out of 1651
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:30:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 7E-110 1E-114 791.2 27.7 300 4-305 40-355 (361)
2 PRK15425 gapA glyceraldehyde-3 100.0 2E-105 5E-110 758.2 31.7 296 5-303 35-331 (331)
3 PTZ00023 glyceraldehyde-3-phos 100.0 3E-105 6E-110 759.7 31.1 299 4-304 35-336 (337)
4 PRK07403 glyceraldehyde-3-phos 100.0 6E-105 1E-109 756.5 31.2 299 5-306 36-337 (337)
5 PLN02272 glyceraldehyde-3-phos 100.0 8E-105 2E-109 771.1 32.3 302 2-305 116-418 (421)
6 PLN02358 glyceraldehyde-3-phos 100.0 1E-104 2E-109 757.2 31.8 300 3-303 37-337 (338)
7 PLN02237 glyceraldehyde-3-phos 100.0 7E-105 1E-109 772.9 30.4 297 5-304 110-411 (442)
8 PLN03096 glyceraldehyde-3-phos 100.0 2E-103 5E-108 757.5 31.1 299 5-305 95-394 (395)
9 PRK07729 glyceraldehyde-3-phos 100.0 1E-102 3E-107 741.4 30.3 298 5-305 35-334 (343)
10 PRK08955 glyceraldehyde-3-phos 100.0 2E-102 4E-107 740.9 28.4 297 3-304 34-333 (334)
11 PRK13535 erythrose 4-phosphate 100.0 1E-101 2E-106 735.8 30.0 296 5-303 37-334 (336)
12 PTZ00353 glycosomal glyceralde 100.0 1E-100 2E-105 728.3 30.4 299 4-305 35-337 (342)
13 TIGR01534 GAPDH-I glyceraldehy 100.0 8E-100 2E-104 721.1 27.8 290 5-296 34-327 (327)
14 PRK08289 glyceraldehyde-3-phos 100.0 9E-100 2E-104 738.7 28.3 296 5-304 168-471 (477)
15 COG0057 GapA Glyceraldehyde-3- 100.0 5.9E-98 1E-102 698.2 29.1 299 5-306 35-335 (335)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 2.6E-97 6E-102 704.6 27.8 290 4-296 34-325 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 4.4E-85 9.5E-90 593.8 14.5 268 3-304 18-285 (285)
18 PF02800 Gp_dh_C: Glyceraldehy 100.0 7.6E-51 1.6E-55 350.2 13.1 157 127-284 1-157 (157)
19 TIGR01546 GAPDH-II_archae glyc 100.0 4.2E-45 9.2E-50 347.2 18.3 203 7-237 32-243 (333)
20 PRK06901 aspartate-semialdehyd 100.0 3.5E-41 7.5E-46 317.1 17.8 221 9-238 17-256 (322)
21 COG0136 Asd Aspartate-semialde 100.0 3.7E-39 8.1E-44 304.0 14.4 251 32-292 39-324 (334)
22 TIGR01745 asd_gamma aspartate- 100.0 1.5E-38 3.3E-43 305.1 13.3 199 32-235 39-297 (366)
23 PRK04207 glyceraldehyde-3-phos 100.0 2.2E-37 4.9E-42 296.7 17.9 248 7-287 35-302 (341)
24 TIGR01296 asd_B aspartate-semi 100.0 3.4E-36 7.4E-41 288.3 15.9 198 32-236 37-272 (339)
25 PRK06728 aspartate-semialdehyd 100.0 1E-35 2.2E-40 284.7 15.0 199 32-237 44-278 (347)
26 PRK14874 aspartate-semialdehyd 100.0 2.2E-35 4.7E-40 282.2 16.3 196 32-236 39-269 (334)
27 PRK06598 aspartate-semialdehyd 100.0 1.1E-34 2.4E-39 279.2 14.3 200 32-235 40-299 (369)
28 PF00044 Gp_dh_N: Glyceraldehy 100.0 2.5E-35 5.4E-40 252.1 8.6 117 4-122 33-151 (151)
29 smart00846 Gp_dh_N Glyceraldeh 100.0 1.7E-34 3.7E-39 246.6 12.3 115 6-122 34-149 (149)
30 PRK08040 putative semialdehyde 100.0 3.2E-30 6.9E-35 246.4 18.2 220 8-236 18-268 (336)
31 PRK05671 aspartate-semialdehyd 100.0 3.7E-29 7.9E-34 239.3 18.6 257 32-301 42-331 (336)
32 PLN02383 aspartate semialdehyd 100.0 6.8E-29 1.5E-33 238.2 13.7 198 32-236 45-277 (344)
33 TIGR00978 asd_EA aspartate-sem 99.9 1.2E-25 2.7E-30 215.5 20.9 229 60-301 72-339 (341)
34 PRK08664 aspartate-semialdehyd 99.9 4.2E-25 9.2E-30 212.4 19.3 166 61-237 76-268 (349)
35 PRK00436 argC N-acetyl-gamma-g 99.9 3.1E-22 6.8E-27 192.2 19.3 229 60-301 67-327 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.9 8.2E-21 1.8E-25 182.6 17.7 230 61-302 68-331 (346)
37 PLN02968 Probable N-acetyl-gam 99.8 1.2E-19 2.5E-24 176.6 18.9 232 60-301 103-365 (381)
38 KOG4777 Aspartate-semialdehyde 99.8 3.6E-20 7.8E-25 168.3 7.4 191 32-238 41-279 (361)
39 PRK11863 N-acetyl-gamma-glutam 99.7 1.8E-17 3.9E-22 157.2 14.2 218 61-287 50-289 (313)
40 TIGR01851 argC_other N-acetyl- 99.7 5.8E-16 1.3E-20 146.3 15.1 178 61-243 49-245 (310)
41 PF02774 Semialdhyde_dhC: Semi 99.3 1.1E-12 2.3E-17 115.8 4.1 105 131-235 1-132 (184)
42 PRK08300 acetaldehyde dehydrog 99.3 1.7E-11 3.8E-16 115.7 11.2 96 61-160 70-171 (302)
43 TIGR03215 ac_ald_DH_ac acetald 98.9 2.1E-09 4.5E-14 101.1 6.4 157 61-222 64-254 (285)
44 COG0002 ArgC Acetylglutamate s 98.8 1.8E-07 3.9E-12 89.5 17.4 215 59-287 68-318 (349)
45 PF01118 Semialdhyde_dh: Semia 97.7 9.5E-06 2.1E-10 66.5 1.2 50 60-111 65-119 (121)
46 KOG4354 N-acetyl-gamma-glutamy 97.2 0.0037 8.1E-08 57.6 10.6 217 62-295 87-318 (340)
47 smart00859 Semialdhyde_dh Semi 96.2 0.0068 1.5E-07 49.3 4.2 55 55-111 59-121 (122)
48 COG4569 MhpF Acetaldehyde dehy 93.7 0.12 2.6E-06 46.7 5.1 73 59-136 69-144 (310)
49 PF03447 NAD_binding_3: Homose 82.8 1.2 2.7E-05 35.6 3.0 32 61-94 59-90 (117)
50 PRK13301 putative L-aspartate 61.9 7 0.00015 36.7 2.9 83 61-150 62-148 (267)
51 smart00833 CobW_C Cobalamin sy 56.9 25 0.00054 26.4 4.8 49 214-262 3-55 (92)
52 PF07683 CobW_C: Cobalamin syn 53.5 29 0.00063 26.2 4.7 50 213-262 2-54 (94)
53 COG1712 Predicted dinucleotide 49.7 14 0.00031 34.1 2.6 87 60-155 59-151 (255)
54 PF02192 PI3K_p85B: PI3-kinase 47.2 41 0.00089 25.7 4.5 37 215-251 2-39 (78)
55 PRK13303 L-aspartate dehydroge 44.8 21 0.00044 33.2 3.0 88 60-151 60-148 (265)
56 PF00107 ADH_zinc_N: Zinc-bind 44.4 8.2 0.00018 30.7 0.3 36 60-95 57-92 (130)
57 TIGR01921 DAP-DH diaminopimela 41.3 1.4E+02 0.003 28.9 8.1 31 60-92 59-89 (324)
58 cd04885 ACT_ThrD-I Tandem C-te 38.3 1.5E+02 0.0032 21.1 6.9 57 177-234 5-61 (68)
59 TIGR03855 NAD_NadX aspartate d 38.2 29 0.00063 31.7 2.9 33 61-94 37-69 (229)
60 cd08230 glucose_DH Glucose deh 34.8 67 0.0014 30.4 4.9 35 60-94 237-271 (355)
61 TIGR03366 HpnZ_proposed putati 34.2 84 0.0018 28.7 5.3 74 60-136 186-260 (280)
62 COG0621 MiaB 2-methylthioadeni 34.0 47 0.001 33.4 3.8 67 69-152 167-239 (437)
63 PRK06270 homoserine dehydrogen 32.9 61 0.0013 31.2 4.3 82 60-150 88-177 (341)
64 COG4930 Predicted ATP-dependen 31.8 43 0.00092 33.8 3.0 26 78-103 632-658 (683)
65 PRK06015 keto-hydroxyglutarate 31.5 26 0.00056 31.5 1.4 50 65-125 56-107 (201)
66 PRK07114 keto-hydroxyglutarate 30.9 37 0.0008 31.0 2.3 51 65-126 71-123 (222)
67 cd04886 ACT_ThrD-II-like C-ter 29.1 1.9E+02 0.0041 19.7 6.1 57 178-234 6-66 (73)
68 PRK04435 hypothetical protein; 28.3 2.1E+02 0.0046 24.1 6.4 68 167-234 65-134 (147)
69 COG1063 Tdh Threonine dehydrog 27.2 61 0.0013 31.1 3.3 37 60-96 237-273 (350)
70 PRK06813 homoserine dehydrogen 27.1 65 0.0014 31.4 3.4 32 61-94 86-122 (346)
71 COG0800 Eda 2-keto-3-deoxy-6-p 26.7 43 0.00092 30.5 1.9 51 65-126 65-117 (211)
72 PF06115 DUF956: Domain of unk 26.4 52 0.0011 27.1 2.2 32 32-66 23-57 (118)
73 TIGR01182 eda Entner-Doudoroff 26.1 37 0.0008 30.6 1.4 50 65-125 60-111 (204)
74 PRK06392 homoserine dehydrogen 26.0 81 0.0018 30.4 3.8 33 60-94 80-116 (326)
75 PF10017 Methyltransf_33: Hist 26.0 1.1E+02 0.0025 25.0 4.3 67 7-86 42-110 (127)
76 TIGR00036 dapB dihydrodipicoli 25.9 70 0.0015 29.7 3.3 34 60-94 67-100 (266)
77 PRK08374 homoserine dehydrogen 25.2 62 0.0013 31.2 2.9 34 59-94 89-122 (336)
78 PRK13304 L-aspartate dehydroge 25.2 72 0.0015 29.5 3.2 33 61-94 61-93 (265)
79 PRK06552 keto-hydroxyglutarate 24.7 56 0.0012 29.5 2.3 66 65-145 68-135 (213)
80 PRK06349 homoserine dehydrogen 24.6 75 0.0016 31.6 3.4 32 60-93 71-103 (426)
81 PRK00048 dihydrodipicolinate r 24.4 3.6E+02 0.0078 24.7 7.7 31 61-92 60-90 (257)
82 COG4995 Uncharacterized protei 24.4 30 0.00065 34.7 0.5 71 19-95 279-361 (420)
83 PF13380 CoA_binding_2: CoA bi 24.1 47 0.001 26.8 1.6 35 60-94 54-88 (116)
84 PRK13587 1-(5-phosphoribosyl)- 24.0 86 0.0019 28.6 3.4 32 63-94 76-107 (234)
85 PF01408 GFO_IDH_MocA: Oxidore 22.8 1.3E+02 0.0028 23.4 3.9 36 60-96 61-96 (120)
86 PF05368 NmrA: NmrA-like famil 22.6 83 0.0018 27.7 3.0 37 58-94 61-103 (233)
87 PRK11579 putative oxidoreducta 22.4 1.2E+02 0.0026 28.9 4.3 36 60-96 63-98 (346)
88 COG2344 AT-rich DNA-binding pr 22.4 1E+02 0.0022 27.8 3.4 55 44-99 130-185 (211)
89 COG2100 Predicted Fe-S oxidore 21.7 1.3E+02 0.0029 29.4 4.3 35 61-95 189-224 (414)
90 PF02629 CoA_binding: CoA bind 21.7 97 0.0021 23.8 2.9 34 61-94 62-95 (96)
91 PF13433 Peripla_BP_5: Peripla 21.7 1.7E+02 0.0036 28.9 5.1 49 98-146 92-140 (363)
92 cd00248 Mth938-like Mth938-lik 21.3 3.3E+02 0.0072 21.6 6.0 26 62-87 53-81 (109)
93 cd05125 Mth938_2P1-like Mth938 20.7 4.1E+02 0.0089 21.5 6.4 33 61-93 54-89 (114)
94 PRK13586 1-(5-phosphoribosyl)- 20.4 1.2E+02 0.0026 27.6 3.6 81 66-150 76-170 (232)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-110 Score=791.19 Aligned_cols=300 Identities=58% Similarity=0.947 Sum_probs=289.9
Q ss_pred cCCChhHHhhhhhcccccccCCCccEEE--------eCceeEEECCEeEEEE-eccCCCCCCCccCCccEEEEecCCCCC
Q 021899 4 VYFEINMQTYMFKYDSVHGQWKHNELKV--------KDEKTLLFGEKPVAVF-GFRNPEEIPWAKTGAEYVVESTGVFTD 74 (306)
Q Consensus 4 ~~~~~~~~ayll~yDS~hg~~~~~~v~~--------~~g~~l~~~g~~i~v~-~~~~~~~~~w~~~gvdiV~e~tG~~~s 74 (306)
|++++++|+|||||||+||+|+ ++|++ +++ .|.+||++|.++ +++||+++||+++|+|||+||||.|.+
T Consensus 40 ~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t 117 (361)
T PTZ00434 40 MSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-VLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTD 117 (361)
T ss_pred CCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-EEEECCEEEEEEEecCChhhCchhhcCCCEEEeCceeecc
Confidence 5689999999999999999999 89998 666 999999999986 999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEeeCCCCC-CCeEEcccCccccCC-CCCEEEcCChhhhhhhhhhHHH-hhhcCeeEEEEeeeecc
Q 021899 75 KDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSI 151 (306)
Q Consensus 75 ~e~a~~h~~aGakkvvIsaps~d-~p~vV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L-~~~fgI~~~~~tT~ha~ 151 (306)
++.+++|+++||||||||+|++| .|+||+|||++.|++ .++||||+|||||||||++|+| ||+|||++++|||+|||
T Consensus 118 ~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHay 197 (361)
T PTZ00434 118 KLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSY 197 (361)
T ss_pred HHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecc
Confidence 99999999999999999999987 689999999999997 5889999999999999999999 79999999999999999
Q ss_pred CCccccccCCCccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHH
Q 021899 152 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNA 231 (306)
Q Consensus 152 t~~q~~~D~~~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~ 231 (306)
|++|+++|+++++||||+|++++||||++||++|++++|+|||+||++|+++||||++||++||+|+++|++++||||++
T Consensus 198 T~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a 277 (361)
T PTZ00434 198 TATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAA 277 (361)
T ss_pred cCCcccccCcCcccccccccccccCccCCcchhhhhceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHH
Confidence 99999999997799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcccccccccCcceEeeccCCCCceeEEeCCCceeec----CCeEEEEEEeCCCchhHhhHHHHHHHHhhhc
Q 021899 232 IKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 305 (306)
Q Consensus 232 l~~a~~~~lkgil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~----~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~~ 305 (306)
|+++++++|||||+|+|+|+||+||+|++||+|||+.+|.+++ ++++|+++||||||||||||+||+.||.+.+
T Consensus 278 ~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~ 355 (361)
T PTZ00434 278 IKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKD 355 (361)
T ss_pred HHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999996 4899999999999999999999999998653
No 2
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2.5e-105 Score=758.23 Aligned_cols=296 Identities=65% Similarity=1.035 Sum_probs=288.5
Q ss_pred CCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhC
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 84 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~a 84 (306)
++++++|+|||||||+||+|+ ++|+++++ .|.|||++|+++++++|+++||+++|+|+||||||.|++++++++|+++
T Consensus 35 ~~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~a 112 (331)
T PRK15425 35 LLDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITA 112 (331)
T ss_pred CCCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcCChhhCcccccCCCEEEEecchhhcHHHHHHHHHC
Confidence 468999999999999999999 89999988 9999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeCCCCC-CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCCc
Q 021899 85 GAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM 163 (306)
Q Consensus 85 GakkvvIsaps~d-~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~~ 163 (306)
|||+|++|+|++| +|+||||||++.|++ ++||||||||||||+|++|+||++|||+++.||||||+|++|+++|++++
T Consensus 113 Gak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lapvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~ 191 (331)
T PRK15425 113 GAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSH 191 (331)
T ss_pred CCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccCCCC
Confidence 9999999999875 799999999999975 78999999999999999999999999999999999999999999999877
Q ss_pred cccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCccccc
Q 021899 164 KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGI 243 (306)
Q Consensus 164 ~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkgi 243 (306)
+|+||+|++++||||++||++++++||||+|+||++++|+||||++||++||++++++++++|||+++|+++++++||||
T Consensus 192 ~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gi 271 (331)
T PRK15425 192 KDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGV 271 (331)
T ss_pred cccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhh
Q 021899 244 LGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303 (306)
Q Consensus 244 l~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~ 303 (306)
|+|+|+|+||+||+|++||||||+.+|.+++|+++|+++||||||||||||+||+.||.+
T Consensus 272 l~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 331 (331)
T PRK15425 272 LGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331 (331)
T ss_pred ccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCchhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 3
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-105 Score=759.70 Aligned_cols=299 Identities=65% Similarity=1.040 Sum_probs=290.8
Q ss_pred cCCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHh
Q 021899 4 VYFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK 83 (306)
Q Consensus 4 ~~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~ 83 (306)
|++++++|+|||||||+||+|+ ++|+++++ .|.+||++|+++++++|+++||++.|+|+||||||.|+++++++.|++
T Consensus 35 ~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~ 112 (337)
T PTZ00023 35 PFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLK 112 (337)
T ss_pred CCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEeCCChhhCCccccCCCEEEEecchhcCHHHHHHHhh
Confidence 5789999999999999999999 89999988 999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCCCC-CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCC
Q 021899 84 GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS 162 (306)
Q Consensus 84 aGakkvvIsaps~d-~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~ 162 (306)
+|||+|++|+|+++ +|+||||||++.|++.++||||||||||||+|++|+||++|||+++.||||||+|++|.++|+++
T Consensus 113 aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~ 192 (337)
T PTZ00023 113 GGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPS 192 (337)
T ss_pred CCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcC
Confidence 99999999999875 79999999999998777899999999999999999999999999999999999999999999875
Q ss_pred --ccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcc
Q 021899 163 --MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 240 (306)
Q Consensus 163 --~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~l 240 (306)
++||||+|++++||||++||++++++||+|||+||++++|+||||++||+++|++++++++++|||+++|+++++++|
T Consensus 193 ~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l 272 (337)
T PTZ00023 193 KGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPL 272 (337)
T ss_pred cccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhh
Q 021899 241 KGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304 (306)
Q Consensus 241 kgil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~ 304 (306)
||||+|+|+|+||+||+|++||+|||+.+|.+++++++|+++||||||||||||+||+.||.++
T Consensus 273 ~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 273 KGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQK 336 (337)
T ss_pred cCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999764
No 4
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=6.3e-105 Score=756.46 Aligned_cols=299 Identities=46% Similarity=0.807 Sum_probs=290.0
Q ss_pred CCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhC
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 84 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~a 84 (306)
+.++++|+|||||||+||+|+ ++|+++++ .|.|||++|+++++++|+++||+++|+|+||||||.|++++++++|+++
T Consensus 36 ~~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~a 113 (337)
T PRK07403 36 TSDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQA 113 (337)
T ss_pred CCCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEEcCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhC
Confidence 468999999999999999999 89999888 9999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeCCCCC--CCeEEcccCccccCC-CCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCC
Q 021899 85 GAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 161 (306)
Q Consensus 85 GakkvvIsaps~d--~p~vV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~ 161 (306)
|||||++|+|++| +|+||||||++.|++ .++||||||||||||+|++|+||++|||+++.||||||+|++|+++|++
T Consensus 114 Gak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~ 193 (337)
T PRK07403 114 GAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDAS 193 (337)
T ss_pred CcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHHHHHHHHHHHhcCeeEEEEEEEeeecCCccccccc
Confidence 9999999999765 699999999999985 4789999999999999999999999999999999999999999999998
Q ss_pred CccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCccc
Q 021899 162 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241 (306)
Q Consensus 162 ~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lk 241 (306)
+ +||||+|++++||||++||++|++++++|+|+||++|+|+||||+++|++||++++++++++|||+++|+++++++||
T Consensus 194 ~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~ 272 (337)
T PRK07403 194 H-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLK 272 (337)
T ss_pred c-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccc
Confidence 7 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhhcC
Q 021899 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 306 (306)
Q Consensus 242 gil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~~~ 306 (306)
|||+|+|+|+||+||+|++||+|||+.+|.+++++++|+++||||||||||||+||+.||.++.|
T Consensus 273 gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE~Gys~r~~dl~~~~~~~~~ 337 (337)
T PRK07403 273 GILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARKWK 337 (337)
T ss_pred cccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecCchhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999987654
No 5
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=7.9e-105 Score=771.12 Aligned_cols=302 Identities=74% Similarity=1.137 Sum_probs=293.3
Q ss_pred cccCCChhHHhhhhhcccccccCCCccEEE-eCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHH
Q 021899 2 YIVYFEINMQTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA 80 (306)
Q Consensus 2 ~~~~~~~~~~ayll~yDS~hg~~~~~~v~~-~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~ 80 (306)
+-|+.++++|+|||||||+||+|+ ++|++ +++ .|.|||++|+|+++++|+++||++.|+||||||||.|++++++++
T Consensus 116 Ndp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~-~l~~~G~~I~V~~~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~ 193 (421)
T PLN02272 116 NDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDS-TLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASA 193 (421)
T ss_pred cCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCC-EEEECCEEEEEEecCCcccCcccccCCCEEEEcCchhccHHHHHH
Confidence 347889999999999999999999 89997 666 999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEeeCCCCCCCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccC
Q 021899 81 HLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDG 160 (306)
Q Consensus 81 h~~aGakkvvIsaps~d~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~ 160 (306)
|+++||||||||+|++|+|+||||||++.|++.++||||||||||||+|++|+||++|||+++.||||||+|++|+++|+
T Consensus 194 hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~ 273 (421)
T PLN02272 194 HLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDG 273 (421)
T ss_pred HhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccC
Confidence 99999999999999989999999999999987778999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcc
Q 021899 161 PSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 240 (306)
Q Consensus 161 ~~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~l 240 (306)
++++||||+|++++||||++||++++++||||+|+||++++||||||++||++||++++++++++|||+++|+++++++|
T Consensus 274 ~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l 353 (421)
T PLN02272 274 PSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPL 353 (421)
T ss_pred ccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhcccc
Confidence 87789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhhc
Q 021899 241 KGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 305 (306)
Q Consensus 241 kgil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~~ 305 (306)
||||+|+|+|+||+||+|++||+|||+.+|++++|+++||++||||||||||||+||+.+|.+..
T Consensus 354 ~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDNEwGys~R~~dl~~~~~~~~ 418 (421)
T PLN02272 354 KGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 418 (421)
T ss_pred ccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999997643
No 6
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.2e-104 Score=757.16 Aligned_cols=300 Identities=89% Similarity=1.334 Sum_probs=291.9
Q ss_pred ccCCChhHHhhhhhcccccccCCCc-cEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHH
Q 021899 3 IVYFEINMQTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH 81 (306)
Q Consensus 3 ~~~~~~~~~ayll~yDS~hg~~~~~-~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h 81 (306)
.|..++++|+|||||||+||+|+ + +|+.++|+.|.|||++|+++++++|+++||++.|+|+||||||.|+++++++.|
T Consensus 37 D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~h 115 (338)
T PLN02358 37 DPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAH 115 (338)
T ss_pred CCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEEEEEEcCCcccCcccccCCCEEEEcccchhhHHHHHHH
Confidence 36678999999999999999999 7 999977768999999999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEeeCCCCCCCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCC
Q 021899 82 LKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 161 (306)
Q Consensus 82 ~~aGakkvvIsaps~d~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~ 161 (306)
+++|||||+||+|++|+|+||||||++.|++.++||||||||||||+|++|+||++|||+++.||||||+|++|+++|++
T Consensus 116 l~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~ 195 (338)
T PLN02358 116 LKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGP 195 (338)
T ss_pred HHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCC
Confidence 99999999999999999999999999999877889999999999999999999999999999999999999999999998
Q ss_pred CccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCccc
Q 021899 162 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241 (306)
Q Consensus 162 ~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lk 241 (306)
+++|+||+|++++||||++||++++++||||+|+||++++|+||||++||++||++++++++++|||+++|+++++++||
T Consensus 196 ~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~ 275 (338)
T PLN02358 196 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLK 275 (338)
T ss_pred CCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhcccc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhh
Q 021899 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303 (306)
Q Consensus 242 gil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~ 303 (306)
|||+|+|+|+||+||+|++||+|||+.+|.+++|+++|+++||||||||||||+||+.||.+
T Consensus 276 gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 276 GILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred CcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 7
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=6.6e-105 Score=772.89 Aligned_cols=297 Identities=49% Similarity=0.820 Sum_probs=288.1
Q ss_pred CCChhHHhhhhhcccccccCCCccEEE-eCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHh
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK 83 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~-~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~ 83 (306)
+.++++|+|||||||+||+|+ ++|++ +++ .|.|||++|+++++++|+++||++.|+||||||||.|.+++++++|++
T Consensus 110 ~~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~-~L~v~Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~ 187 (442)
T PLN02237 110 SGGVKNASHLLKYDSMLGTFK-ADVKIVDDE-TISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 187 (442)
T ss_pred CCCHHHHHHHHccccCCCCcC-CceEECCCC-EEEECCEEEEEEEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHh
Confidence 468999999999999999999 89997 555 999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCCCC--CCeEEcccCccccCCC-CCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccC
Q 021899 84 GGAKKVVISAPSKD--APMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDG 160 (306)
Q Consensus 84 aGakkvvIsaps~d--~p~vV~gVN~~~~~~~-~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~ 160 (306)
+|||||++|+|+.| +||||||||++.|++. ++||||||||||||+|++|+||++|||+++.||||||||++|+++|+
T Consensus 188 aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~ 267 (442)
T PLN02237 188 AGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDA 267 (442)
T ss_pred CCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccC
Confidence 99999999999875 7999999999999875 78999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecC-CCCHHHHHHHHHHhccCc
Q 021899 161 PSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEK-EATYEEIKNAIKEESEGK 239 (306)
Q Consensus 161 ~~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~-~~~~e~i~~~l~~a~~~~ 239 (306)
++ +||||+|++++||||++||++|++++|||||+||++|+++||||++||++||++++++ ++++||||++|+++++++
T Consensus 268 ~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~ 346 (442)
T PLN02237 268 SH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGP 346 (442)
T ss_pred CC-cccccccccccccccCCcchhhhhceecccCCCceeeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccc
Confidence 86 8999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred ccccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhh
Q 021899 240 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304 (306)
Q Consensus 240 lkgil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~ 304 (306)
|||||+|+|+|+||+||+|++||+|||+.+|++++++|+||++||||||||||||+||+.||.+.
T Consensus 347 lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aWYDNEwGys~R~~dl~~~~~~~ 411 (442)
T PLN02237 347 LKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAK 411 (442)
T ss_pred cCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEEEeCCchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 8
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2.1e-103 Score=757.54 Aligned_cols=299 Identities=46% Similarity=0.776 Sum_probs=289.9
Q ss_pred CCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhC
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 84 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~a 84 (306)
..++++++|||+|||+||+|+ ++|+.++|+.|.|||++|++++++||+++||++.|+|+||||||.|.+++++++|+++
T Consensus 95 ~~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~a 173 (395)
T PLN03096 95 TGGVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQA 173 (395)
T ss_pred CCCHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHC
Confidence 468999999999999999999 8998866658999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeCCCCC-CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCCc
Q 021899 85 GAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM 163 (306)
Q Consensus 85 GakkvvIsaps~d-~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~~ 163 (306)
|||||+||+|+++ +||||||||++.|++.++||||||||||||+|++|+||++|||+++.||||||||++|+++|+++
T Consensus 174 GAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~- 252 (395)
T PLN03096 174 GAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH- 252 (395)
T ss_pred CCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-
Confidence 9999999999875 89999999999998778899999999999999999999999999999999999999999999986
Q ss_pred cccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCccccc
Q 021899 164 KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGI 243 (306)
Q Consensus 164 ~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkgi 243 (306)
+|+||+|++++||||++||+++++++|||+|+||++++|+||||++||++||++++++++++|||+++|+++++++||||
T Consensus 253 ~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gi 332 (395)
T PLN03096 253 RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGI 332 (395)
T ss_pred CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhhc
Q 021899 244 LGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 305 (306)
Q Consensus 244 l~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~~ 305 (306)
|+|+|+|+||+||+|++||+|||+.+|.+++++++|+++||||||||||||+||+.+|.+..
T Consensus 333 l~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~~ 394 (395)
T PLN03096 333 LAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANKW 394 (395)
T ss_pred EEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecCchhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999998754
No 9
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.4e-102 Score=741.40 Aligned_cols=298 Identities=47% Similarity=0.814 Sum_probs=288.4
Q ss_pred CCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhC
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 84 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~a 84 (306)
+.++++|+|||||||+||+|+ ++|+++++ .|.|||++|+++++++|+++||++.|+|+||||||.|+++++++.|+++
T Consensus 35 ~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~a 112 (343)
T PRK07729 35 SYPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEA 112 (343)
T ss_pred CCCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEcCChhhCcccccCCCEEEEccchhhhHhHHHHHHHc
Confidence 468999999999999999999 89999888 9999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeCCCCC-CCeEEcccCccccCC-CCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCC
Q 021899 85 GAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS 162 (306)
Q Consensus 85 GakkvvIsaps~d-~p~vV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~ 162 (306)
|||+|++|+|++| ++++|+|||++.|++ .++||||||||||||+|++|+||++|||+++.||||||+|++|+++|+++
T Consensus 113 Gak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~ 192 (343)
T PRK07729 113 GAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH 192 (343)
T ss_pred CCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEecccCcccccccch
Confidence 9999999999776 556799999999987 47899999999999999999999999999999999999999999999986
Q ss_pred ccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcccc
Q 021899 163 MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242 (306)
Q Consensus 163 ~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkg 242 (306)
+||||+|++++||||++||+++++.+++|+|+||++|+|+||||++||++||++++++++++|+|+++|+++++++|||
T Consensus 193 -~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~g 271 (343)
T PRK07729 193 -KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKG 271 (343)
T ss_pred -hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhhc
Q 021899 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 305 (306)
Q Consensus 243 il~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~~ 305 (306)
||+|+|+|+||+||+|++||+|||+.+|.+++|+++|+++||||||||||||+||+.||.+++
T Consensus 272 il~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~Gys~r~~dl~~~~~~~~ 334 (343)
T PRK07729 272 ILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADEL 334 (343)
T ss_pred ccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecCchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999998643
No 10
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.9e-102 Score=740.89 Aligned_cols=297 Identities=40% Similarity=0.714 Sum_probs=287.2
Q ss_pred ccCCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHH
Q 021899 3 IVYFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL 82 (306)
Q Consensus 3 ~~~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~ 82 (306)
.|++++++|+|||||||+||+|+ ++|+.+++ .|.|||++|+++++++|+++||+ |+|+||||||.|.+++++++|+
T Consensus 34 d~~~~~~~~a~ll~yDs~~g~~~-~~v~~~g~-~l~~~g~~i~v~~~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl 109 (334)
T PRK08955 34 DPAGDAATLAHLLEFDSVHGRWH-HEVTAEGD-AIVINGKRIRTTQNKAIADTDWS--GCDVVIEASGVMKTKALLQAYL 109 (334)
T ss_pred CCCCCHHHHHHHhhhhccCCCCC-CCEEEcCC-EEEECCEEEEEEecCChhhCCcc--CCCEEEEccchhhcHHHHHHHH
Confidence 36789999999999999999999 89998776 99999999999999999999997 9999999999999999999999
Q ss_pred hCCCCeEEeeCCCCC--CCeEEcccCccccCC-CCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcccccc
Q 021899 83 KGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD 159 (306)
Q Consensus 83 ~aGakkvvIsaps~d--~p~vV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D 159 (306)
++|||||++|+|+.| +||||||||++.|++ .++||||||||||||+|++|+||++|||+++.||||||+|++|+++|
T Consensus 110 ~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld 189 (334)
T PRK08955 110 DQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILD 189 (334)
T ss_pred HCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCcccccc
Confidence 999999999999764 699999999999987 37899999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCc
Q 021899 160 GPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 239 (306)
Q Consensus 160 ~~~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~ 239 (306)
+++ +|+||+|++++||||++||++++++||||+|+||++++|+||||++||++||++++++++++|||+++|+++++++
T Consensus 190 ~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~ 268 (334)
T PRK08955 190 APH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGE 268 (334)
T ss_pred CCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCC
Confidence 986 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhh
Q 021899 240 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304 (306)
Q Consensus 240 lkgil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~ 304 (306)
|||||+|+|+|+||+||+|++||+|||+.+|.+++|+++|+++||||||||||||+||+.||...
T Consensus 269 l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~dl~~~~~~~ 333 (334)
T PRK08955 269 LKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNEWGYANRTAELARKVGLA 333 (334)
T ss_pred cCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCCchhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999754
No 11
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-101 Score=735.81 Aligned_cols=296 Identities=35% Similarity=0.661 Sum_probs=287.8
Q ss_pred CCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhC
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 84 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~a 84 (306)
+.++++|+|||||||+||+|+ ++|+.+++ .|.|||++|+++++++|+++||++.|+|+||||||.|.++++++.|+++
T Consensus 37 ~~~~~~~ayll~ydS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~a 114 (336)
T PRK13535 37 LADAEGMAHLLKYDTSHGRFA-WDVRQERD-QLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAA 114 (336)
T ss_pred CCCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHc
Confidence 568999999999999999999 89998877 9999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeCCCC-C-CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCC
Q 021899 85 GAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS 162 (306)
Q Consensus 85 GakkvvIsaps~-d-~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~ 162 (306)
|||+|++|+|++ | .++||||||++.|++.++||||||||||||+|++|+||++|||+++.||||||+|++|+++|+++
T Consensus 115 GAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~ 194 (336)
T PRK13535 115 GAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH 194 (336)
T ss_pred CCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh
Confidence 999999999986 5 45999999999998778899999999999999999999999999999999999999999999996
Q ss_pred ccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcccc
Q 021899 163 MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242 (306)
Q Consensus 163 ~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkg 242 (306)
+|+|++|++++||||++||++++++||||+|+||++++|+||||++||++||++++++++++|+++++|+++++++|||
T Consensus 195 -~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~g 273 (336)
T PRK13535 195 -PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHG 273 (336)
T ss_pred -hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhh
Q 021899 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303 (306)
Q Consensus 243 il~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~ 303 (306)
||+|+++|+||+||+|++||+|||+.+|.+++|+++|+++||||||||||||+||+.||.+
T Consensus 274 il~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 274 IVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAA 334 (336)
T ss_pred cccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEcCchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999964
No 12
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1e-100 Score=728.29 Aligned_cols=299 Identities=26% Similarity=0.506 Sum_probs=285.9
Q ss_pred cCCChhHHhhhhhcccccccCCCccEEEeCceeEEECC-EeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHH
Q 021899 4 VYFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGE-KPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL 82 (306)
Q Consensus 4 ~~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g-~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~ 82 (306)
|++++++|+|||||||+||+|+.++|+++++ .|.+|| ++|+++++++|+++||+++|+|+||||||.|.+++.+.+|+
T Consensus 35 ~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl 113 (342)
T PTZ00353 35 ASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHV 113 (342)
T ss_pred CCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEecCCcccCcccccCCCEEEEcccccccHhhhhhhh
Confidence 5679999999999999999995148999888 999999 89999999999999999999999999999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCC
Q 021899 83 KGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS 162 (306)
Q Consensus 83 ~aGakkvvIsaps~d~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~ 162 (306)
++|||||||++|++|+||||||||++.|++.++||||||||||||+|++|+||++|||++++|||||||+ +|...|+++
T Consensus 114 ~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~LapvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~ 192 (342)
T PTZ00353 114 TGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARS 192 (342)
T ss_pred hcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcc
Confidence 9999999999999999999999999999877789999999999999999999999999999999999997 677777755
Q ss_pred --ccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcc
Q 021899 163 --MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 240 (306)
Q Consensus 163 --~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~l 240 (306)
++|||++|+|++||||++||++++++||||+|+||++|+|+||||++||++||++++++++++|||+++|+++++++|
T Consensus 193 ~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l 272 (342)
T PTZ00353 193 KNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRL 272 (342)
T ss_pred cccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhccc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeeccCCCCceeEEeCCCceee-cCCeEEEEEEeCCCchhHhhHHHHHHHHhhhc
Q 021899 241 KGILGYTEEDVVSTDFVGDSRSSIFDAKAGIAL-SKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 305 (306)
Q Consensus 241 kgil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~-~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~~ 305 (306)
||||+|+|+|+||+||+|++ |||||+.+|.++ +++++|+++||||||||||||+||+.||.+..
T Consensus 273 ~gil~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~~ 337 (342)
T PTZ00353 273 NGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHKMVLWFDVECYYAARLLSLVKQLHQIH 337 (342)
T ss_pred CCeEEecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEEEEEEecCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999 599999999995 88999999999999999999999999998653
No 13
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=7.9e-100 Score=721.14 Aligned_cols=290 Identities=58% Similarity=0.952 Sum_probs=280.6
Q ss_pred CCChhHHhhhhhcccccccCCCccEEEeCceeEEECCE-eEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHh
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK-PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK 83 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~-~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~ 83 (306)
.+++++|+|||||||+||+|+ ++|++++++.|.|||+ .|+++++++|+++||+++|+|+||||||.|+++++++.|++
T Consensus 34 ~~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~ 112 (327)
T TIGR01534 34 LTDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLE 112 (327)
T ss_pred CCCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEecCCcccCchhhcCCCEEEEccchhhcHHHHHHHhh
Confidence 368999999999999999999 8999887635999999 99999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCCCC-CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCC
Q 021899 84 GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS 162 (306)
Q Consensus 84 aGakkvvIsaps~d-~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~ 162 (306)
+|||||++|+|+.| +||||||||++.|+++++||||||||||||+|++|+||++|||+++.||||||+|++|+++|+++
T Consensus 113 ~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~ 192 (327)
T TIGR01534 113 AGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH 192 (327)
T ss_pred CCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccccccCCC
Confidence 99999999999887 89999999999998777899999999999999999999999999999999999999999999986
Q ss_pred ccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcccc
Q 021899 163 MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242 (306)
Q Consensus 163 ~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkg 242 (306)
+++||+|++++||||+++|++++++||||+|+||++++|+||||++||++++++++++++++|||+++|+++++++|||
T Consensus 193 -~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~g 271 (327)
T TIGR01534 193 -KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKG 271 (327)
T ss_pred -CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcceEeeccCCCCceeEEeCCCceeec--CCeEEEEEEeCCCchhHhhHHH
Q 021899 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS--KNFVKLVSWYDNEWGYSSRVID 296 (306)
Q Consensus 243 il~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~--~~~~k~~~WyDnE~gy~~r~~d 296 (306)
||+|+|+|+||+||+|++||+|||+.+|.+++ |+++||++||||||||||||+|
T Consensus 272 il~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDNE~gys~r~~d 327 (327)
T TIGR01534 272 VLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDNEWGYSNRVVD 327 (327)
T ss_pred eeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCCCceeeeEccC
Confidence 99999999999999999999999999999954 8999999999999999999986
No 14
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=9.3e-100 Score=738.66 Aligned_cols=296 Identities=39% Similarity=0.630 Sum_probs=286.9
Q ss_pred CCChhHHhhhhhcccccccCCCccEEEe--CceeEEECCEeEEEEeccCCCCCCCccCCcc--EEEEecCCCCCHHHHHH
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKVK--DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAE--YVVESTGVFTDKDKAAA 80 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~~--~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvd--iV~e~tG~~~s~e~a~~ 80 (306)
..|+++++|||||||+||+|+ ++|+++ ++ .|++||+.|+++++++|+++||+++|+| +|+||||.|.+++.+.+
T Consensus 168 ~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~-~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~ 245 (477)
T PRK08289 168 EGDLEKRASLLRRDSVHGPFN-GTITVDEENN-AIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQ 245 (477)
T ss_pred CCCHHHHHHHhhhhcCCCCCC-CceEeecCCC-EEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhh
Confidence 468999999999999999999 899987 45 8999999999999999999999999999 99999999999999999
Q ss_pred HHh-CCCCeEEeeCCCCC-CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccc
Q 021899 81 HLK-GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV 158 (306)
Q Consensus 81 h~~-aGakkvvIsaps~d-~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~ 158 (306)
|++ +||||||||+|++| +|+||||||++.|++.++||||||||||||+|++|+||++|||+++.|||+||||++|+++
T Consensus 246 HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lv 325 (477)
T PRK08289 246 HLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLI 325 (477)
T ss_pred chhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHh
Confidence 999 89999999999986 8999999999999877889999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhcc-
Q 021899 159 DGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE- 237 (306)
Q Consensus 159 D~~~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~- 237 (306)
|+++ +++||+|++++||||++||++++++|+||+|+||++|+|+||||++||++||++++++++++|||+++|+++++
T Consensus 326 D~~h-kd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~ 404 (477)
T PRK08289 326 DNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLH 404 (477)
T ss_pred hhhh-hcCcccceeeeeeEecCCChhhhhhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhc
Confidence 9997 88999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CcccccccccCc-ceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhh
Q 021899 238 GKLKGILGYTEE-DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304 (306)
Q Consensus 238 ~~lkgil~~~e~-~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~ 304 (306)
++|+|||+|+++ |+||+||+|++||+|||+.+|+++ |+++|+++||||||||||||+||+.+|++.
T Consensus 405 ~~L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~ 471 (477)
T PRK08289 405 SPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGV 471 (477)
T ss_pred CCccceeeecccCCeeeeeecCCCchhheehhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhc
Confidence 899999999999 799999999999999999999998 799999999999999999999999999864
No 15
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-98 Score=698.15 Aligned_cols=299 Identities=60% Similarity=0.921 Sum_probs=290.7
Q ss_pred CCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhC
Q 021899 5 YFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 84 (306)
Q Consensus 5 ~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~a 84 (306)
..+++++||||||||+||+|+ ++|+.+++ .+.|+|+.|+++.+++|+++||+++|+|+|+||||.|+++|.+++|+++
T Consensus 35 ~t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~a 112 (335)
T COG0057 35 LTDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKA 112 (335)
T ss_pred CCCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEecCChHHCCccccCccEEEECCCCccchhhHHHHHHh
Confidence 378999999999999999999 99998887 9999999999999999999999999999999999999999999999998
Q ss_pred -CCCeEEeeCCCCC-CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCC
Q 021899 85 -GAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS 162 (306)
Q Consensus 85 -GakkvvIsaps~d-~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~ 162 (306)
|||||+|++|+++ +++||+|||++.|++.+.||||+|||||||+|++|+|+++|||+++.|||+|++|++|+++|+||
T Consensus 113 gGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph 192 (335)
T COG0057 113 GGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH 192 (335)
T ss_pred cCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhHHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc
Confidence 5999999999997 99999999999999889999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcccc
Q 021899 163 MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242 (306)
Q Consensus 163 ~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkg 242 (306)
++|||+|+|++||||++||++|++++|||||+||++|+++||||+++|++||++++++++++|||+++|+++++++|||
T Consensus 193 -~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg 271 (335)
T COG0057 193 -KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKG 271 (335)
T ss_pred -cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhhcC
Q 021899 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 306 (306)
Q Consensus 243 il~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~~~ 306 (306)
+++|+|+|+||+||+|++||+|||+.+|.+.+++|+|+++||||||||++|++|+..++....|
T Consensus 272 ~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~gys~r~vD~~~~~~~~~~ 335 (335)
T COG0057 272 ILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKALK 335 (335)
T ss_pred eeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEeccccchHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999989999999999999999999999888876553
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=2.6e-97 Score=704.64 Aligned_cols=290 Identities=36% Similarity=0.686 Sum_probs=280.8
Q ss_pred cCCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHh
Q 021899 4 VYFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK 83 (306)
Q Consensus 4 ~~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~ 83 (306)
.+.++++++|||||||+||+|+ ++|+.+++ .|.|||+.|+++++++|+++||++.|+|+||||||.|.+++++++|++
T Consensus 34 d~~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~ 111 (325)
T TIGR01532 34 ELADQASMAHLLRYDTSHGRFP-GEVKVDGD-CLHVNGDCIRVLHSPTPEALPWRALGVDLVLDCTGVYGNREQGERHIR 111 (325)
T ss_pred cCCCHHHHHHHHhhCccCCCCC-CcEEEeCC-EEEECCeEEEEEEcCChhhccccccCCCEEEEccchhccHHHHHHHHH
Confidence 3568899999999999999999 89998887 999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCCC-C-CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCC
Q 021899 84 GGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 161 (306)
Q Consensus 84 aGakkvvIsaps~-d-~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~ 161 (306)
+|||+|++|+|.+ | .++||||||++.|++.++||||||||||||+|++|+||++|||+++.||||||+|++|+++|++
T Consensus 112 aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~lap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~ 191 (325)
T TIGR01532 112 AGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIVPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAY 191 (325)
T ss_pred cCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHHHHHHHHHHhcCeeEEEEEEEEhhcCCccccccc
Confidence 9999999999976 4 4589999999999877889999999999999999999999999999999999999999999999
Q ss_pred CccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCccc
Q 021899 162 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241 (306)
Q Consensus 162 ~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lk 241 (306)
+ +++|++|.+++||||++||++++++||||+|+||++++||||||++||++||++++++++++|+++++|+++++++||
T Consensus 192 ~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~ 270 (325)
T TIGR01532 192 H-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREAAQGPLR 270 (325)
T ss_pred h-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHhhccccc
Confidence 6 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHH
Q 021899 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVID 296 (306)
Q Consensus 242 gil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d 296 (306)
|||+|+++|+||+||+|++||+|||+.+|++++++++|+++|||||||||+||+|
T Consensus 271 gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~d 325 (325)
T TIGR01532 271 GIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNEWGFANRMLD 325 (325)
T ss_pred cccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCcceeeeEccC
Confidence 9999999999999999999999999999999999999999999999999999986
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-85 Score=593.77 Aligned_cols=268 Identities=65% Similarity=1.049 Sum_probs=261.1
Q ss_pred ccCCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHH
Q 021899 3 IVYFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL 82 (306)
Q Consensus 3 ~~~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~ 82 (306)
.||++.++|+|||||||+||+|+ ++++++++ +++++|++|.++++++|..|+|...++|+|+|+||.|.+.+.+..|+
T Consensus 18 dpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g~~~v~e~tg~f~t~e~~~~~~ 95 (285)
T KOG0657|consen 18 DPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKGADIVVESTGVFTTMEKPGKHF 95 (285)
T ss_pred CcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCccccccceeEeeccccccccccccccc
Confidence 37899999999999999999999 99999999 89999999999999999999999999999999999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCC
Q 021899 83 KGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS 162 (306)
Q Consensus 83 ~aGakkvvIsaps~d~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~ 162 (306)
++||||++|++||+|.|++|+|||+++|+++..||||+|||||||||+.|+|||+|||.+++|||+|++|++|+++|+|+
T Consensus 96 ~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~tatQktvdgps 175 (285)
T KOG0657|consen 96 QGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAITATQKTVDGPS 175 (285)
T ss_pred cccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccccccceeeeccccccccCcc
Confidence 99999999999999999999999999999877799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcccc
Q 021899 163 MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKG 242 (306)
Q Consensus 163 ~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkg 242 (306)
.++||.+|.+.|||||++||++|+++|++|||+||++||+||||++ ++.+||+|+++++.++|+|+++++++++++|||
T Consensus 176 ~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~~~~lkG 254 (285)
T KOG0657|consen 176 GKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLASEIPLKG 254 (285)
T ss_pred cccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCCchhHhhHHHHHHHHhhh
Q 021899 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304 (306)
Q Consensus 243 il~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE~gy~~r~~d~~~~~~~~ 304 (306)
|| ||+ +| ++|||||||||+|++||+.||+++
T Consensus 255 IL--te~--------------------------~f---ISWYDNE~GYS~rVvDl~~h~ask 285 (285)
T KOG0657|consen 255 IL--TEH--------------------------HF---ISWYDNEFGYSNRVVDLMEHMASK 285 (285)
T ss_pred cc--ccc--------------------------ce---eeeeccccccchHHHHHHHHHhcC
Confidence 99 877 44 899999999999999999999864
No 18
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=7.6e-51 Score=350.24 Aligned_cols=157 Identities=64% Similarity=0.996 Sum_probs=152.9
Q ss_pred hhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCCccccccccccccccccCCCChhHHHHhhhcccCCceEEEEEeec
Q 021899 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 206 (306)
Q Consensus 127 Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpel~gki~~~avRVP 206 (306)
|+|++|+|+++|||+++.|||+|++|++|+++|+++ +|||++|++++||||++||+++++++|||||+||++|+++|||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 799999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred cCcceEEEEEEEecCCCCHHHHHHHHHHhccCcccccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEe
Q 021899 207 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY 284 (306)
Q Consensus 207 v~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkgil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~Wy 284 (306)
|+++|++||++++++++++|||+++|+++++++++||++|+|+|+||+||+|++||+|||+.++++++|+++|+++||
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
No 19
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=4.2e-45 Score=347.24 Aligned_cols=203 Identities=20% Similarity=0.211 Sum_probs=181.5
Q ss_pred Chh---HHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHh
Q 021899 7 EIN---MQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK 83 (306)
Q Consensus 7 ~~~---~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~ 83 (306)
+++ +++|+++|||+|+.+. ..++.+++ .+.++|+ ++++. .++|+|++|||.+..++.++.|++
T Consensus 32 ~~~~~a~lA~~lgyds~~~~~~-~~~~~~~~-~l~v~g~---------~eeLl---~~vDiVve~Tp~~~~~~na~~~~~ 97 (333)
T TIGR01546 32 SPDFEAYRAKELGIPVYAASEE-FIPRFEEA-GIEVAGT---------LEDLL---EKVDIVVDATPGGIGAKNKPLYEK 97 (333)
T ss_pred ChHHHHHHHHHhCCCEEeecCC-cceEeccC-ceEecCC---------HHHHh---hcCCEEEECCCCCCChhhHHHHHh
Confidence 455 7889999999995444 46777766 7777774 33332 379999999999999999999999
Q ss_pred CCCCeEEeeCCCCC--CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCC
Q 021899 84 GGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 161 (306)
Q Consensus 84 aGakkvvIsaps~d--~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~ 161 (306)
+|+|+|++++|++| +++||+|+|++.|.+.+ +|||+|||||||+|++++|+++|||+++.|||+|+ |++|+
T Consensus 98 ~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~Lap~~~~L~~~fGI~~~~~Ttvh~-t~dq~----- 170 (333)
T TIGR01546 98 AGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLVRTLNAINDYSKVDKVRAVMVRR-AADPN----- 170 (333)
T ss_pred CCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHHHHHHHHHHhcCeEEEEEEEEee-cCChh-----
Confidence 99999999999987 47899999999998644 99999999999999999999999999999999997 98883
Q ss_pred CccccccccccccccccC-CC---ChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhcc
Q 021899 162 SMKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE 237 (306)
Q Consensus 162 ~~~d~r~~r~~a~NiiP~-~t---G~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~ 237 (306)
|+||+| ++||||+ +| ++++++++|+|+|+ ++++++||||+++|++||++++++++++|||+++|+++++
T Consensus 171 ---d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 171 ---DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred ---hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 889999 6999999 45 78999999999998 9999999999999999999999999999999999999886
No 20
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-41 Score=317.06 Aligned_cols=221 Identities=20% Similarity=0.229 Sum_probs=185.8
Q ss_pred hHHhhhhhcccccccCCCccEE-EeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCC
Q 021899 9 NMQTYMFKYDSVHGQWKHNELK-VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 87 (306)
Q Consensus 9 ~~~ayll~yDS~hg~~~~~~v~-~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGak 87 (306)
+.+--|-+.|.+.+++.-...+ .+.|+++.|+|+++.|. ++++.+|. ++|+||| +|...++++++.+.++||
T Consensus 17 ~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~---~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~- 89 (322)
T PRK06901 17 KLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQI---APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC- 89 (322)
T ss_pred HHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEE---ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC-
Confidence 3444555666665543301222 35678999999999998 45566675 8999999 999999999999999999
Q ss_pred eEEeeCCCC-----CCCeEEcccCccccCC--CCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcc-cccc
Q 021899 88 KVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVD 159 (306)
Q Consensus 88 kvvIsaps~-----d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q-~~~D 159 (306)
+|||++|+ |+|++|||||++.+.. .++||+||||+|.+|+++|+|||+.|||+++.+|||||+||+| +++|
T Consensus 90 -~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~ 168 (322)
T PRK06901 90 -IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVK 168 (322)
T ss_pred -EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHH
Confidence 99999997 6999999999999875 3689999999999999999999999999999999999999999 6666
Q ss_pred CCC--------cc-ccccccccccccccCC-CChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHH
Q 021899 160 GPS--------MK-DWRGGRAASFNIIPSS-TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIK 229 (306)
Q Consensus 160 ~~~--------~~-d~r~~r~~a~NiiP~~-tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~ 229 (306)
++. .+ .....+++|||+||++ +|-..|.+|++|++ .++++||+||||++||++.++++++++++.|+++
T Consensus 169 eL~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~ 247 (322)
T PRK06901 169 KLAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQL 247 (322)
T ss_pred HHHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHH
Confidence 542 01 1123489999999999 67888999999877 2599999999999999999999999999999999
Q ss_pred HHHHHhccC
Q 021899 230 NAIKEESEG 238 (306)
Q Consensus 230 ~~l~~a~~~ 238 (306)
++|+++++-
T Consensus 248 ~~l~~~~gv 256 (322)
T PRK06901 248 AEWQQNNLL 256 (322)
T ss_pred HHHHhCCCc
Confidence 999998753
No 21
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-39 Score=303.99 Aligned_cols=251 Identities=22% Similarity=0.261 Sum_probs=192.2
Q ss_pred eCcee-EEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEccc
Q 021899 32 KDEKT-LLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGV 105 (306)
Q Consensus 32 ~~g~~-l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gV 105 (306)
+.|++ +.|+|+.+.+... -.+...|. ++|+||+|.|...++++++++.++|| +|||++|+ |+|+|||+|
T Consensus 39 SaG~~~~~f~~~~~~v~~~-~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeV 113 (334)
T COG0136 39 SAGKKYIEFGGKSIGVPED-AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEV 113 (334)
T ss_pred ccCCccccccCccccCccc-cccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCc
Confidence 45666 9999988777631 15566676 99999999999999999999999999 99999997 799999999
Q ss_pred CccccCC--CCC-EEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccc-cccCCCc---------ccccccccc
Q 021899 106 NEKEYKP--ELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSM---------KDWRGGRAA 172 (306)
Q Consensus 106 N~~~~~~--~~~-IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~-~~D~~~~---------~d~r~~r~~ 172 (306)
|++.+.. .++ ||+||||||.+|+++||||+++|||+++.+|||||+||+|. .++.+.. .-.-.++++
T Consensus 114 N~~~l~~~~~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~i 193 (334)
T COG0136 114 NPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPL 193 (334)
T ss_pred CHHHHHhhhhCCCEEECCChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccc
Confidence 9999764 244 99999999999999999999999999999999999999995 6654320 111126899
Q ss_pred ccccccCC-----CChhHHHHhhhcccC-------CceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHH-HHHhccCc
Q 021899 173 SFNIIPSS-----TGAAKAVGKVLPALN-------GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNA-IKEESEGK 239 (306)
Q Consensus 173 a~NiiP~~-----tG~ak~~~kvlpel~-------gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~-l~~a~~~~ 239 (306)
|||+||++ +|++|||+|+..|++ .+++++|+||||++||++.++++++++++.+|+.+. +.+++.-.
T Consensus 194 AfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap~v~ 273 (334)
T COG0136 194 AFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPGVV 273 (334)
T ss_pred cccccccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccCCCcE
Confidence 99999999 579999998877764 389999999999999999999999999999999965 44444322
Q ss_pred cccccccc-CcceEeeccCCCCceeEEeCCCcee-ecCCeEEEEEEeCC-CchhHh
Q 021899 240 LKGILGYT-EEDVVSTDFVGDSRSSIFDAKAGIA-LSKNFVKLVSWYDN-EWGYSS 292 (306)
Q Consensus 240 lkgil~~~-e~~~VS~d~~~~~~s~i~d~~~~~~-~~~~~~k~~~WyDn-E~gy~~ 292 (306)
+..-. +.|+.-.|-.|.. .++-++...- ..++.+++..==|| -||=|-
T Consensus 274 ---v~~~~~~~P~~~~d~~g~~--~v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~ 324 (334)
T COG0136 274 ---VVDNPEDRPQTPLDATGGD--EVSVGRIRKDLSGPEGLKLWVVGDNLRKGAAL 324 (334)
T ss_pred ---EEeCCccCccChhhhcCCC--ceEEeEeeecCCCCCcEEEEEEechhhhhhHH
Confidence 22222 2465566666665 2333332211 12344666555677 355443
No 22
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=1.5e-38 Score=305.09 Aligned_cols=199 Identities=15% Similarity=0.141 Sum_probs=170.1
Q ss_pred eCceeEEECCEeEEEEeccCCCCC-CCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEccc
Q 021899 32 KDEKTLLFGEKPVAVFGFRNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGV 105 (306)
Q Consensus 32 ~~g~~l~~~g~~i~v~~~~~~~~~-~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gV 105 (306)
.+|+.+.|+|+.+.|. +.++. .|. ++|+||+|+|...++++++++.++|+..+|||++|+ |+|+|||+|
T Consensus 39 s~g~~~~f~~~~~~v~---~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeV 113 (366)
T TIGR01745 39 LGQAAPSFGGTTGTLQ---DAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPV 113 (366)
T ss_pred hCCCcCCCCCCcceEE---cCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCc
Confidence 4577899999988777 34443 454 899999999999999999999999933399999997 699999999
Q ss_pred CccccCCC--CCE--EEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcc-ccccCCC------------------
Q 021899 106 NEKEYKPE--LDI--VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDGPS------------------ 162 (306)
Q Consensus 106 N~~~~~~~--~~I--Vsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q-~~~D~~~------------------ 162 (306)
|++.+... ++| |+||||||++|+++|+|||+.|||+++.+|||||+||+| +++|++.
T Consensus 114 N~~~i~~~~~~gi~~ianPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~ 193 (366)
T TIGR01745 114 NQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPS 193 (366)
T ss_pred CHHHHHhHHhCCcCeEECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccc
Confidence 99988752 567 899999999999999999999999999999999999999 3332111
Q ss_pred ------------------ccccccccccccccccCC-----CChhHHHHhhhcccC--------CceEEEEEeeccCcce
Q 021899 163 ------------------MKDWRGGRAASFNIIPSS-----TGAAKAVGKVLPALN--------GKLTGMSFRVPTVDVS 211 (306)
Q Consensus 163 ------------------~~d~r~~r~~a~NiiP~~-----tG~ak~~~kvlpel~--------gki~~~avRVPv~~gs 211 (306)
...-.|++++|||+||++ +|+++||+|+..|++ .++++||+||||++||
T Consensus 194 ~~il~~~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gH 273 (366)
T TIGR01745 194 SAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCH 273 (366)
T ss_pred hhhhhhccccccccccCCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccE
Confidence 012247899999999998 688999987776643 2599999999999999
Q ss_pred EEEEEEEecCCCCHHHHHHHHHHh
Q 021899 212 VVDLTVRLEKEATYEEIKNAIKEE 235 (306)
Q Consensus 212 ~~dltv~~~~~~~~e~i~~~l~~a 235 (306)
++.++++++++++.++++++|+++
T Consensus 274 s~sv~ve~~~~vs~e~i~~~L~~~ 297 (366)
T TIGR01745 274 SQAFTIKLKKDVSLETIEEIIRAH 297 (366)
T ss_pred EEEEEEEECCCCCHHHHHHHHHhC
Confidence 999999999999999999999985
No 23
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-37 Score=296.67 Aligned_cols=248 Identities=23% Similarity=0.277 Sum_probs=183.8
Q ss_pred ChhHHhhhhh---cccccccCCCccEE-EeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHH
Q 021899 7 EINMQTYMFK---YDSVHGQWKHNELK-VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL 82 (306)
Q Consensus 7 ~~~~~ayll~---yDS~hg~~~~~~v~-~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~ 82 (306)
++++.+||++ || .||+++ ..++ ..+. .+.+.+. ++++ + .++|+|+||||.+.+++.++.|+
T Consensus 35 ~~~~~~~la~~~G~~-~~~~~~-~~~~~~~~~-~i~V~~~---------~~el-~--~~vDVVIdaT~~~~~~e~a~~~~ 99 (341)
T PRK04207 35 KPDYEARVAVEKGYP-LYVADP-EREKAFEEA-GIPVAGT---------IEDL-L--EKADIVVDATPGGVGAKNKELYE 99 (341)
T ss_pred ChHHHHHHHHhcCCC-ccccCc-cccccccCC-ceEEcCC---------hhHh-h--ccCCEEEECCCchhhHHHHHHHH
Confidence 4688999988 44 677776 4444 2222 3444332 2222 1 37999999999999999999999
Q ss_pred hCCCCeEEeeCCCC-CCC--eEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcccccc
Q 021899 83 KGGAKKVVISAPSK-DAP--MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD 159 (306)
Q Consensus 83 ~aGakkvvIsaps~-d~p--~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D 159 (306)
++| ++||+++|+. ++| +||||||++.+... ++|+|||||||||+|+|++|+++|||+++.|||+|++|+
T Consensus 100 ~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT~~l~~~l~~L~~~fgI~~~~vTtv~a~td------ 171 (341)
T PRK04207 100 KAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNTTGLCRTLCALDRAFGVKKVRATLVRRAAD------ 171 (341)
T ss_pred HCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHHHHHHHHHHHHHHhcCceEEEEEEEEcCCC------
Confidence 999 6688888764 343 47999999998753 489999999999999999999999999999999999883
Q ss_pred CCCccccccccccccccccCC----CChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHh
Q 021899 160 GPSMKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE 235 (306)
Q Consensus 160 ~~~~~d~r~~r~~a~NiiP~~----tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a 235 (306)
+ ++++ |++++||+|.. +...+++++++|+|+ ++++|+||||++||++++++++++++++|||+++|+++
T Consensus 172 -~--~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~ 244 (341)
T PRK04207 172 -P--KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENT 244 (341)
T ss_pred -c--chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhC
Confidence 2 3443 77899999863 455789999999998 99999999999999999999999999999999999998
Q ss_pred ccC----cccccccccCcceEeeccCCCCce-----eEEeCCCceeecCCeEEEEEEeCCC
Q 021899 236 SEG----KLKGILGYTEEDVVSTDFVGDSRS-----SIFDAKAGIALSKNFVKLVSWYDNE 287 (306)
Q Consensus 236 ~~~----~lkgil~~~e~~~VS~d~~~~~~s-----~i~d~~~~~~~~~~~~k~~~WyDnE 287 (306)
++- .-.|+-. +.+++--.+=.|.|+. +|+.-. +.+.|+-+-++.=-++|
T Consensus 245 ~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~~d~~e~~~~~~~--~~~~~~~~~~~~~~~~~ 302 (341)
T PRK04207 245 PRILLVRASDGIDS-TAELIEYARDLGRPRGDLYENAVWEDS--ITVDGNELYLMQAVHQE 302 (341)
T ss_pred CCCEeeccccCCCC-hHHHhHHHHHcCCCcccchhhhccHhh--eEEeCCEEEEEEecCcc
Confidence 763 2234444 4443333333444443 233322 22334444554445555
No 24
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=3.4e-36 Score=288.30 Aligned_cols=198 Identities=24% Similarity=0.325 Sum_probs=171.2
Q ss_pred eCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccC
Q 021899 32 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVN 106 (306)
Q Consensus 32 ~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN 106 (306)
+.|+.+.+.|+.+.+... +...| .++|+||+|+|.+.+++++++|+++|+ +|||++++ |+|++|||||
T Consensus 37 ~~g~~~~~~~~~~~~~~~---~~~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN 109 (339)
T TIGR01296 37 SAGRKVTFKGKELEVNEA---KIESF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVN 109 (339)
T ss_pred cCCCeeeeCCeeEEEEeC---ChHHh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcC
Confidence 456688888877666532 22235 489999999999999999999999999 89999974 4899999999
Q ss_pred ccccCC--CCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcc-cc-----------ccCCCccc-------
Q 021899 107 EKEYKP--ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KT-----------VDGPSMKD------- 165 (306)
Q Consensus 107 ~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q-~~-----------~D~~~~~d------- 165 (306)
++.++. .++|||||+|+|+|++++|+||+++|+|+++.|||+|++||+| ++ .+++...+
T Consensus 110 ~~~i~~~~~~~iianp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~ 189 (339)
T TIGR01296 110 LEDLKEFNTKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKA 189 (339)
T ss_pred HHHHhhCccCCEEECCCcHHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCcccccccc
Confidence 999875 3569999999999999999999999999999999999999997 33 33332122
Q ss_pred cccccccccccccCC-----CChhHHHHhhhcccC-------CceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHH
Q 021899 166 WRGGRAASFNIIPSS-----TGAAKAVGKVLPALN-------GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIK 233 (306)
Q Consensus 166 ~r~~r~~a~NiiP~~-----tG~ak~~~kvlpel~-------gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~ 233 (306)
.+|+|+++|||||++ +|+++||.|+.+||+ .+++++|+||||++||+.+++++++++++.++++++|+
T Consensus 190 ~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~ 269 (339)
T TIGR01296 190 KKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLK 269 (339)
T ss_pred ccCCCcccccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHh
Confidence 789999999999996 799999999999986 37999999999999999999999999999999999999
Q ss_pred Hhc
Q 021899 234 EES 236 (306)
Q Consensus 234 ~a~ 236 (306)
+++
T Consensus 270 ~~~ 272 (339)
T TIGR01296 270 NAP 272 (339)
T ss_pred cCC
Confidence 654
No 25
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1e-35 Score=284.67 Aligned_cols=199 Identities=20% Similarity=0.310 Sum_probs=172.5
Q ss_pred eCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccC
Q 021899 32 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVN 106 (306)
Q Consensus 32 ~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN 106 (306)
+.|+.+.++|+.+.+... +++ .| .++|+||+|+|...++++++++.++|+ +|||++++ |+|+++||||
T Consensus 44 saGk~~~~~~~~l~v~~~-~~~--~~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN 116 (347)
T PRK06728 44 SAGKTVQFKGREIIIQEA-KIN--SF--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVN 116 (347)
T ss_pred cCCCCeeeCCcceEEEeC-CHH--Hh--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcC
Confidence 567789999988777743 333 35 389999999999999999999999999 99999986 6999999999
Q ss_pred ccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcc-ccccCCC-----------ccccccc-----
Q 021899 107 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDGPS-----------MKDWRGG----- 169 (306)
Q Consensus 107 ~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q-~~~D~~~-----------~~d~r~~----- 169 (306)
.+.+...++||+||+|+|++++++|+||+++++|+++.++|+|++||+| ++++++. ...-.++
T Consensus 117 ~e~i~~~~~iIanPnC~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~ 196 (347)
T PRK06728 117 AHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDK 196 (347)
T ss_pred HHHHhccCCEEECCCCHHHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccc
Confidence 9998764479999999999999999999999999999999999999999 6665422 1122456
Q ss_pred --cccccccccCC-----CChhHHHHhhhcccCC-------ceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHh
Q 021899 170 --RAASFNIIPSS-----TGAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE 235 (306)
Q Consensus 170 --r~~a~NiiP~~-----tG~ak~~~kvlpel~g-------ki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a 235 (306)
++++||+||++ +|+++||+|+..|+++ ++++||+||||++||++.++++|+++++.++++++|+++
T Consensus 197 ~~~~iafNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~ 276 (347)
T PRK06728 197 KHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDA 276 (347)
T ss_pred cCCceeccccCcCCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcC
Confidence 99999999998 7889998887777542 699999999999999999999999999999999999887
Q ss_pred cc
Q 021899 236 SE 237 (306)
Q Consensus 236 ~~ 237 (306)
+.
T Consensus 277 ~g 278 (347)
T PRK06728 277 PG 278 (347)
T ss_pred CC
Confidence 54
No 26
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-35 Score=282.22 Aligned_cols=196 Identities=26% Similarity=0.382 Sum_probs=169.8
Q ss_pred eCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccC
Q 021899 32 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVN 106 (306)
Q Consensus 32 ~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN 106 (306)
+.|+.+.++|+.+.+. +++..+|. ++|+||+|+|.+.+++++++|+++|+ +|||++++ |+|+++||||
T Consensus 39 ~~g~~l~~~g~~i~v~---d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn 111 (334)
T PRK14874 39 SAGKELSFKGKELKVE---DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVN 111 (334)
T ss_pred cCCCeeeeCCceeEEe---eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcC
Confidence 4466788888877776 55555684 89999999999999999999999999 99999885 4799999999
Q ss_pred ccccCCC--CCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCccc------------cccCCC--cccccccc
Q 021899 107 EKEYKPE--LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPS--MKDWRGGR 170 (306)
Q Consensus 107 ~~~~~~~--~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~------------~~D~~~--~~d~r~~r 170 (306)
++.++.. ++|||||+|+|+|++|+|+||+++|+|+++.|||+|++||+|+ .+|+++ .+++||+|
T Consensus 112 ~~~i~~~~~~~iVanp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (334)
T PRK14874 112 PEALAEHRKKGIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPK 191 (334)
T ss_pred HHHHhhhhcCCeEECccHHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCc
Confidence 9999764 4799999999999999999999999999999999999998772 344322 36889999
Q ss_pred ccccccccCC-----CChhHHHHh-------hh--cccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhc
Q 021899 171 AASFNIIPSS-----TGAAKAVGK-------VL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 236 (306)
Q Consensus 171 ~~a~NiiP~~-----tG~ak~~~k-------vl--pel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~ 236 (306)
++++|++|+. +|+++||+| ++ |++ +++++++||||++||+.+++++++++++.++++++|++++
T Consensus 192 ~~a~niip~~~~~~~~gh~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~~ 269 (334)
T PRK14874 192 PIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEAP 269 (334)
T ss_pred cccCcccCcCCccccCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence 9999999997 888888544 44 555 5999999999999999999999999999999999999853
No 27
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-34 Score=279.17 Aligned_cols=200 Identities=15% Similarity=0.121 Sum_probs=167.6
Q ss_pred eCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccC
Q 021899 32 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVN 106 (306)
Q Consensus 32 ~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN 106 (306)
.+|+.+.|+|+.+.++...+++ .| .++|+||+|+|...++++++++.++|++.+|||++|+ |+|++|||||
T Consensus 40 sg~~~~~f~g~~~~v~~~~~~~--~~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN 115 (369)
T PRK06598 40 AGGAAPSFGGKEGTLQDAFDID--AL--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVN 115 (369)
T ss_pred hCCcccccCCCcceEEecCChh--Hh--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcC
Confidence 3454568999888887533333 35 4799999999999999999999999954499999986 6999999999
Q ss_pred ccccCCC--C--CEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcc-ccccCCC-------------------
Q 021899 107 EKEYKPE--L--DIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDGPS------------------- 162 (306)
Q Consensus 107 ~~~~~~~--~--~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q-~~~D~~~------------------- 162 (306)
++.+... + ++|+||+|+|++++++|+||++.++|+++.++|||++||+| +++|++.
T Consensus 116 ~e~i~~~~~~g~~iIanPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~ 195 (369)
T PRK06598 116 RDVIDDALANGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPAS 195 (369)
T ss_pred HHHHHhhhhcCCCEEEcCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccch
Confidence 9998642 2 48999999999999999999999999999999999999999 4332211
Q ss_pred -----------------ccccccccccccccccCC-----CChhHHHHhhhcccC---------CceEEEEEeeccCcce
Q 021899 163 -----------------MKDWRGGRAASFNIIPSS-----TGAAKAVGKVLPALN---------GKLTGMSFRVPTVDVS 211 (306)
Q Consensus 163 -----------------~~d~r~~r~~a~NiiP~~-----tG~ak~~~kvlpel~---------gki~~~avRVPv~~gs 211 (306)
...-.++++++||+||++ +|+++||+|+..|++ .++++||+||||++||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gH 275 (369)
T PRK06598 196 AILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCH 275 (369)
T ss_pred hhhhhhhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccE
Confidence 012246789999999998 789999987776643 2599999999999999
Q ss_pred EEEEEEEecCCCCHHHHHHHHHHh
Q 021899 212 VVDLTVRLEKEATYEEIKNAIKEE 235 (306)
Q Consensus 212 ~~dltv~~~~~~~~e~i~~~l~~a 235 (306)
++.++++++++++.++++++|+++
T Consensus 276 s~sv~ve~~~~~~~~~i~~~L~~~ 299 (369)
T PRK06598 276 SQALTIKLKKDVPLAEIEEILAAH 299 (369)
T ss_pred EEEEEEEECCCCCHHHHHHHHHhc
Confidence 999999999999999999999985
No 28
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=2.5e-35 Score=252.06 Aligned_cols=117 Identities=50% Similarity=0.861 Sum_probs=108.7
Q ss_pred cCCChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHh
Q 021899 4 VYFEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK 83 (306)
Q Consensus 4 ~~~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~ 83 (306)
+..++++++|||||||+||+|+ ++++.+++ .|.++|+.|+++++++|+++||+++|||+|+||||.|.+++.++.|++
T Consensus 33 ~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~ 110 (151)
T PF00044_consen 33 PAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERDPEEIPWGELGVDIVVECTGKFRTRENAEAHLD 110 (151)
T ss_dssp SSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSSGGGSTHHHHTESEEEETSSSTHSHHHHTHHHH
T ss_pred ccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhhhcccccccccccEEEeccccceeccccccccc
Confidence 3458999999999999999999 89999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCCCC--CCeEEcccCccccCCCCCEEEcCCh
Q 021899 84 GGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASC 122 (306)
Q Consensus 84 aGakkvvIsaps~d--~p~vV~gVN~~~~~~~~~IVsn~sC 122 (306)
+||||||+|+|++| +||||+|||++.|+++++|||++||
T Consensus 111 ~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 111 AGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp TTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred ccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 99999999999996 8999999999999987799999999
No 29
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.7e-34 Score=246.63 Aligned_cols=115 Identities=50% Similarity=0.839 Sum_probs=110.6
Q ss_pred CChhHHhhhhhcccccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCC
Q 021899 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 85 (306)
Q Consensus 6 ~~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aG 85 (306)
.++++++|||||||+||+|+ .+++.+++ .|.+||+.|+++++++|+++||++.|+|+|+||||.|.+++.++.|+++|
T Consensus 34 ~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~G 111 (149)
T smart00846 34 TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERDPANLPWKELGVDIVVECTGKFTTREKASAHLKAG 111 (149)
T ss_pred CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCChHHCcccccCCeEEEeccccccchHHHHHHHHcC
Confidence 68999999999999999999 89999888 89999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeeCCCCC-CCeEEcccCccccCCCCCEEEcCCh
Q 021899 86 AKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASC 122 (306)
Q Consensus 86 akkvvIsaps~d-~p~vV~gVN~~~~~~~~~IVsn~sC 122 (306)
|||||||+|++| .++||+|||++.|+++++||||+||
T Consensus 112 akkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 112 AKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred CCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999999999987 4699999999999987779999999
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.97 E-value=3.2e-30 Score=246.39 Aligned_cols=220 Identities=20% Similarity=0.253 Sum_probs=177.3
Q ss_pred hhHHhhhhhcccccccCCCccEE--EeCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCC
Q 021899 8 INMQTYMFKYDSVHGQWKHNELK--VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 85 (306)
Q Consensus 8 ~~~~ayll~yDS~hg~~~~~~v~--~~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aG 85 (306)
-+.+..|.+++-++..+. .+. -+.|+.+.++|+.+.+. ++++++|. ++|+||+|+|...++++++.++++|
T Consensus 18 ~ellrlL~~~~hP~~~l~--~laS~~saG~~~~~~~~~~~v~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g 90 (336)
T PRK08040 18 EALLELLAERQFPVGELY--ALASEESAGETLRFGGKSVTVQ---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAG 90 (336)
T ss_pred HHHHHHHhcCCCCceEEE--EEEccCcCCceEEECCcceEEE---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCC
Confidence 345566666554444433 111 25677899999877776 56667775 7999999999999999999999999
Q ss_pred CCeEEeeCCCC-----CCCeEEcccCccccCC--CCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcc-cc
Q 021899 86 AKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KT 157 (306)
Q Consensus 86 akkvvIsaps~-----d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q-~~ 157 (306)
+ +|||++++ |+|+++||||.+.++. ..+||+||+|+|++++..|+||+++++|+++.++|+|++||+| ++
T Consensus 91 ~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~ 168 (336)
T PRK08040 91 C--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAA 168 (336)
T ss_pred C--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhh
Confidence 9 89999986 5899999999955543 4689999999999999999999999999999999999999999 44
Q ss_pred ccCCC-----------ccccccccccccccccCC---CChhHHHHhhhcccCC-------ceEEEEEeeccCcceEEEEE
Q 021899 158 VDGPS-----------MKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLT 216 (306)
Q Consensus 158 ~D~~~-----------~~d~r~~r~~a~NiiP~~---tG~ak~~~kvlpel~g-------ki~~~avRVPv~~gs~~dlt 216 (306)
++++. .+...+++++++|++|++ +|...+++++.||++. +++.+++||||++||+..++
T Consensus 169 ~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~ 248 (336)
T PRK08040 169 VDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVH 248 (336)
T ss_pred HHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchHhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEE
Confidence 44311 112457888999999996 3455566666666532 48999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHhc
Q 021899 217 VRLEKEATYEEIKNAIKEES 236 (306)
Q Consensus 217 v~~~~~~~~e~i~~~l~~a~ 236 (306)
++++++++.+++.++|++++
T Consensus 249 v~~~~~v~~~~i~~~l~~~p 268 (336)
T PRK08040 249 FEALRPLAAEEARDALEQGE 268 (336)
T ss_pred EEECCCCCHHHHHHHHhcCC
Confidence 99999999999999999843
No 31
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.96 E-value=3.7e-29 Score=239.33 Aligned_cols=257 Identities=15% Similarity=0.160 Sum_probs=192.1
Q ss_pred eCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC----CCCeEEcccCc
Q 021899 32 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----DAPMFVVGVNE 107 (306)
Q Consensus 32 ~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~----d~p~vV~gVN~ 107 (306)
..|+.+.++|+.+.+. +++..+| .++|+||+|+|...+.++++.++++|+ .|||++++ |+|+++||||.
T Consensus 42 ~aG~~l~~~~~~l~~~---~~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~ 114 (336)
T PRK05671 42 SAGHSVPFAGKNLRVR---EVDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNA 114 (336)
T ss_pred cCCCeeccCCcceEEe---eCChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCH
Confidence 4566788888766665 3333345 489999999999999999999999999 89999986 69999999999
Q ss_pred cccCC--CCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcc-ccccCCC-----------ccccccccccc
Q 021899 108 KEYKP--ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDGPS-----------MKDWRGGRAAS 173 (306)
Q Consensus 108 ~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q-~~~D~~~-----------~~d~r~~r~~a 173 (306)
+.+.. ..+||+||+|+|+++++.|+||++.++++++.++|+|++||+| ++++++. ...-.++++++
T Consensus 115 ~~i~~~~~~~iIAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~ia 194 (336)
T PRK05671 115 ERLASLAAPFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVA 194 (336)
T ss_pred HHHccccCCCEEECCCcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccc
Confidence 99875 3689999999999999999999999999999999999999999 4444421 12235789999
Q ss_pred cccccCC-----CChhHHHHhhhcccCC-------ceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCccc
Q 021899 174 FNIIPSS-----TGAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241 (306)
Q Consensus 174 ~NiiP~~-----tG~ak~~~kvlpel~g-------ki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lk 241 (306)
||++|++ +|+++||.|..||++. +++.+++||||++||+..++++++++++.++++++|++++.-.+
T Consensus 195 fn~~P~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~~v~v- 273 (336)
T PRK05671 195 FNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAPGIEL- 273 (336)
T ss_pred cccccccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCCCeEE-
Confidence 9999998 4888899988888643 48999999999999999999999999999999999996543221
Q ss_pred ccccccCcceEeeccCCCCceeEEeCCCcee--ecCCeEEEEEEeCCCc-hhHhhHHHHHHHH
Q 021899 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIA--LSKNFVKLVSWYDNEW-GYSSRVIDLIVHM 301 (306)
Q Consensus 242 gil~~~e~~~VS~d~~~~~~s~i~d~~~~~~--~~~~~~k~~~WyDnE~-gy~~r~~d~~~~~ 301 (306)
+.-.+-|-.-.|..|..+-.| +.... -.++.+.+.+=-||=. |=|-..+-.+..+
T Consensus 274 --~~~~~~p~~~~~v~g~~~~~v---g~~~~~~~~~~~l~~~~~~DNL~kGAA~~AVq~~~~l 331 (336)
T PRK05671 274 --VEAGDYPTPVGDAVGQDVVYV---GRVRAGVDDPCQLNLWLTSDNVRKGAALNAVQVAELL 331 (336)
T ss_pred --eCCCCCCCChHHcCCCCeEEE---EEEEecCCCCCEEEEEEEehhHHHHHHHHHHHHHHHH
Confidence 110011221124455543222 11110 1234566666688853 5555555555544
No 32
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.96 E-value=6.8e-29 Score=238.24 Aligned_cols=198 Identities=16% Similarity=0.233 Sum_probs=166.2
Q ss_pred eCceeEEECCEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccC
Q 021899 32 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVN 106 (306)
Q Consensus 32 ~~g~~l~~~g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN 106 (306)
..|+.+.++|+.+.+... +++ .| .++|+||+|+|...++++++++.++|| +|||++++ ++|+++||+|
T Consensus 45 saGk~~~~~~~~~~v~~~-~~~--~~--~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn 117 (344)
T PLN02383 45 SAGKKVTFEGRDYTVEEL-TED--SF--DGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVN 117 (344)
T ss_pred CCCCeeeecCceeEEEeC-CHH--HH--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcC
Confidence 456688888876666532 222 24 379999999999999999999999999 99999986 5899999999
Q ss_pred ccccCCC------CCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEeeeeccCCcc-ccccCCC-----------cccccc
Q 021899 107 EKEYKPE------LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDGPS-----------MKDWRG 168 (306)
Q Consensus 107 ~~~~~~~------~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q-~~~D~~~-----------~~d~r~ 168 (306)
.+.++.. ++||+||+|+|+++++.|+||+++++|+++.++|+|++||+| +++++++ ...-++
T Consensus 118 ~~~i~~~~~~~~~~~iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~ 197 (344)
T PLN02383 118 PEAMKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIF 197 (344)
T ss_pred HHHHHhhhhcccCCcEEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhcc
Confidence 9998752 349999999999999999999999999999999999999999 5555432 012357
Q ss_pred ccccccccccCC-----CChhHHHHhhhccc-------CCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhc
Q 021899 169 GRAASFNIIPSS-----TGAAKAVGKVLPAL-------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 236 (306)
Q Consensus 169 ~r~~a~NiiP~~-----tG~ak~~~kvlpel-------~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~ 236 (306)
+.+.++|++|+. +|++++|.++.-|+ +.+++.+|+||||++||+..++++++++++.++++++|++++
T Consensus 198 ~~~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~p 277 (344)
T PLN02383 198 AQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASAP 277 (344)
T ss_pred CCccccccccccCccccCCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 889999999998 67777877766665 125999999999999999999999999999999999999843
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.94 E-value=1.2e-25 Score=215.51 Aligned_cols=229 Identities=22% Similarity=0.214 Sum_probs=174.8
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccCccccCC---------CCCEEEcCChhhh
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP---------ELDIVSNASCTTN 125 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN~~~~~~---------~~~IVsn~sCtT~ 125 (306)
.++|+||+|++...+.+.++.+.++|+ .|||.++. ++|+++|++|++.|.. ..+||+||+|+|+
T Consensus 72 ~~~DvVf~a~p~~~s~~~~~~~~~~G~--~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~t 149 (341)
T TIGR00978 72 KDVDIVFSALPSEVAEEVEPKLAEAGK--PVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTA 149 (341)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHCCC--EEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHHH
Confidence 489999999999999999999999999 67888875 4899999999987652 2359999999999
Q ss_pred hhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCCccccccccccccccccCCCCh----hHHHHhhhcccCC-----
Q 021899 126 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA----AKAVGKVLPALNG----- 196 (306)
Q Consensus 126 ~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~~~d~r~~r~~a~NiiP~~tG~----ak~~~kvlpel~g----- 196 (306)
|++++|+||+++++|+++.+||+|++||+|+... + .+.+++|++|+..+. ..|+.++++.+.+
T Consensus 150 ~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~~~~~~~~ 221 (341)
T TIGR00978 150 GLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKILGKLENGKIEP 221 (341)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHHhCccccCcccC
Confidence 9999999999999999999999999999996422 1 235799999999664 3567788887633
Q ss_pred ---ceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcccccccccCcceEeeccC------------CCCc
Q 021899 197 ---KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV------------GDSR 261 (306)
Q Consensus 197 ---ki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkgil~~~e~~~VS~d~~------------~~~~ 261 (306)
+++.+++|||+++||+++++++++++++.++++++|+++.+.++...+.-+.+|.|-..=. |...
T Consensus 222 ~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~~~~~~~p~~~~~~~~g~~~ 301 (341)
T TIGR00978 222 APFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIVRDEEDRPQPRLDRDAGGGM 301 (341)
T ss_pred CCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEECCCCCCCCcceeeecCCCc
Confidence 5999999999999999999999999999999999999988765544444455555544211 1111
Q ss_pred eeEEeCCCceeecCCeEEEEEEeCCC-chhHhhHHHHHHHH
Q 021899 262 SSIFDAKAGIALSKNFVKLVSWYDNE-WGYSSRVIDLIVHM 301 (306)
Q Consensus 262 s~i~d~~~~~~~~~~~~k~~~WyDnE-~gy~~r~~d~~~~~ 301 (306)
. ++.+ ...-+++.+.+++=-||= ||=|-+-|-.+..|
T Consensus 302 ~--~~ig-~~~~~~~~l~~~~~~DNl~kGaA~~avq~~n~~ 339 (341)
T TIGR00978 302 A--VTVG-RLREEGGSLKYVVLGHNLVRGAAGATLLNAELA 339 (341)
T ss_pred e--EEEE-eEECCCCeEEEEEEEchHHHHHHHHHHHHHHHH
Confidence 1 1111 111134556666668884 56666655555554
No 34
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.93 E-value=4.2e-25 Score=212.44 Aligned_cols=166 Identities=23% Similarity=0.286 Sum_probs=141.1
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccCccccCC----------CCCEEEcCChhhh
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP----------ELDIVSNASCTTN 125 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN~~~~~~----------~~~IVsn~sCtT~ 125 (306)
++|+||+|++...+.+.++..+++|+ .+||.++. +.|++++++|++.|.. ..++||||+|+|+
T Consensus 76 ~~DvVf~a~p~~~s~~~~~~~~~~G~--~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~iVa~p~C~~t 153 (349)
T PRK08664 76 DVDIVFSALPSDVAGEVEEEFAKAGK--PVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTI 153 (349)
T ss_pred CCCEEEEeCChhHHHHHHHHHHHCCC--EEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCceEEEccCHHHH
Confidence 79999999999999999998889999 67777764 4789999999987631 1369999999999
Q ss_pred hhhhhhHHHhhhcCeeEEEEeeeeccCCccccccCCCccccccccccccccccCCCCh----hHHHHhh--------hcc
Q 021899 126 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA----AKAVGKV--------LPA 193 (306)
Q Consensus 126 ~Lap~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~~~d~r~~r~~a~NiiP~~tG~----ak~~~kv--------lpe 193 (306)
|++++|+||++ |||+++.|||+|++||+|+... ..+.+++|++|+..+. ..|+.++ +|.
T Consensus 154 ~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~~--------~~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~ 224 (349)
T PRK08664 154 GLVLALKPLMD-FGIERVHVTTMQAISGAGYPGV--------PSMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGKIVP 224 (349)
T ss_pred HHHHHHHHHHH-CCCcEEEEEEEeccccCCcccc--------hhhhhhcCcccccCchhhhhhHHHHHHhhhcccccccC
Confidence 99999999999 9999999999999999985321 1346899999999774 1233333 344
Q ss_pred cCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhcc
Q 021899 194 LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE 237 (306)
Q Consensus 194 l~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~ 237 (306)
++.+++++++|||+++||+.+++++++++++.++++++|+++.+
T Consensus 225 ~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 225 ADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG 268 (349)
T ss_pred CCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence 57789999999999999999999999999999999999999776
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.89 E-value=3.1e-22 Score=192.23 Aligned_cols=229 Identities=18% Similarity=0.178 Sum_probs=165.6
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC----C--------------------CCeEEcccCccccCCCCC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----D--------------------APMFVVGVNEKEYKPELD 115 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~----d--------------------~p~vV~gVN~~~~~~~~~ 115 (306)
.++|+||.|++...+.+.++.++++|+ .|||++++ + +|+.+||+|.+.+.. .+
T Consensus 67 ~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~-~~ 143 (343)
T PRK00436 67 AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKG-AR 143 (343)
T ss_pred cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcC-CC
Confidence 479999999999999999999999998 99999975 2 689999999999875 58
Q ss_pred EEEcCChhhhhhhhhhHHHhhhcCee--EEEEeeeeccCCcc-ccccCCCccccccccccccccccCCCChhHHHHhhhc
Q 021899 116 IVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQ-KTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 192 (306)
Q Consensus 116 IVsn~sCtT~~Lap~lk~L~~~fgI~--~~~~tT~ha~t~~q-~~~D~~~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlp 192 (306)
+|+||+|+|++++.+|+||++..+|+ ++.++|++++||+| ++++..+... +.+.-.++|++|+. +..|+.+.+.
T Consensus 144 iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~-~~~~~~~y~~~~h~--h~~Ei~~~l~ 220 (343)
T PRK00436 144 LIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSE-VNENLRPYKVGGHR--HTPEIEQELS 220 (343)
T ss_pred EEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchh-hcCCeeecccCCCC--CHHHHHHHHH
Confidence 99999999999999999999999998 89999999999999 4566544221 22333477777765 4455555444
Q ss_pred ccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccCcccccccccCcc-eE-eeccCCCCceeEEeCCCc
Q 021899 193 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED-VV-STDFVGDSRSSIFDAKAG 270 (306)
Q Consensus 193 el~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~~lkgil~~~e~~-~V-S~d~~~~~~s~i~d~~~~ 270 (306)
.+.++++.+++|||+++||+..++++++++++.++++++|+++=++ -++| .+.+++ .. -.+-.|..+-.| +
T Consensus 221 ~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~-~~~v-~v~~~~~~p~~~~v~g~~~~~i---g-- 293 (343)
T PRK00436 221 ALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYAD-EPFV-RVLPEGQYPETKSVRGSNFCDI---G-- 293 (343)
T ss_pred HhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCC-CCcE-EEeCCCCCcchhhhCCCCeEEE---E--
Confidence 3323799999999999999999999999999999999999864332 1222 222221 11 112334332222 1
Q ss_pred eee--cCCeEEEEEEeCCC-chhHhhHHHHHHHH
Q 021899 271 IAL--SKNFVKLVSWYDNE-WGYSSRVIDLIVHM 301 (306)
Q Consensus 271 ~~~--~~~~~k~~~WyDnE-~gy~~r~~d~~~~~ 301 (306)
+.. +++.+.+++=-||= .|=|-+-+-.++.|
T Consensus 294 ~~~d~~~~~~~~~~~~DNL~kGAA~~Avq~~nl~ 327 (343)
T PRK00436 294 FAVDERTGRLVVVSAIDNLVKGAAGQAVQNMNIM 327 (343)
T ss_pred EEEcCCCCEEEEEEEecccchhHHHHHHHHHHHH
Confidence 122 24567777778984 34444444444443
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.86 E-value=8.2e-21 Score=182.62 Aligned_cols=230 Identities=16% Similarity=0.148 Sum_probs=160.1
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC----C--------------------CCeEEcccCccccCCCCCE
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----D--------------------APMFVVGVNEKEYKPELDI 116 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~----d--------------------~p~vV~gVN~~~~~~~~~I 116 (306)
++|+||.|++...+++.++.++++|+ .|||++++ + .|..+||+|.+.+.. .++
T Consensus 68 ~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~-~~i 144 (346)
T TIGR01850 68 DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKG-ARL 144 (346)
T ss_pred CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCC-CcE
Confidence 79999999999999999999999997 89999875 2 789999999998864 679
Q ss_pred EEcCChhhhhhhhhhHHHhhhcCee--EEEEeeeeccCCccc-cccCCCccccccccccccccccCCCChhHHHHhhhcc
Q 021899 117 VSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPA 193 (306)
Q Consensus 117 Vsn~sCtT~~Lap~lk~L~~~fgI~--~~~~tT~ha~t~~q~-~~D~~~~~d~r~~r~~a~NiiP~~tG~ak~~~kvlpe 193 (306)
|+||+|.++++...|+||++++.|+ ++.++|++++||+|+ ..+.++... +...-.+.|+.|+. +..|+.+.+..
T Consensus 145 ianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~-~~~~~~~y~~~~h~--h~~Ei~~~l~~ 221 (346)
T TIGR01850 145 IANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPE-VNENLRPYKVTGHR--HTPEIEQELGR 221 (346)
T ss_pred EEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchh-hcCCeeeeccCCcC--cHHHHHHHHHH
Confidence 9999999999999999999998887 899999999999994 555443211 11112233444443 33444433322
Q ss_pred c---CCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccC-cccccccccCcceEeeccCCCCceeEEeCCC
Q 021899 194 L---NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG-KLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 269 (306)
Q Consensus 194 l---~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~-~lkgil~~~e~~~VS~d~~~~~~s~i~d~~~ 269 (306)
+ +.+++.+++|||+++||+..++++++++++.++++++|+++-++ |+--++.-.+-|-. .+..|..+-.| +
T Consensus 222 ~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~~~~p~~-~~v~g~n~~~i---g- 296 (346)
T TIGR01850 222 LAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPEGEYPST-KAVIGSNFCDI---G- 296 (346)
T ss_pred hcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcCh-HHhcCCCeEEE---E-
Confidence 2 23599999999999999999999999999999999999865433 22212211001211 13334333222 2
Q ss_pred ceeec--CCeEEEEEEeCCCc-hhHhhHHHHHHHHh
Q 021899 270 GIALS--KNFVKLVSWYDNEW-GYSSRVIDLIVHMA 302 (306)
Q Consensus 270 ~~~~~--~~~~k~~~WyDnE~-gy~~r~~d~~~~~~ 302 (306)
...+ ++.+.+++=-||=. |=|-+-+-.++.|-
T Consensus 297 -~~~d~~~~~l~~~~~~DNL~KGAAg~AVq~~n~~~ 331 (346)
T TIGR01850 297 -FAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNLMF 331 (346)
T ss_pred -EEEcCCCCEEEEEEEeechhhhHHHHHHHHHHHHc
Confidence 2221 34567777788843 44555555555543
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.84 E-value=1.2e-19 Score=176.64 Aligned_cols=232 Identities=11% Similarity=0.059 Sum_probs=161.2
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----C--------CCeEEcccCccc-cC---------CCCCE
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----D--------APMFVVGVNEKE-YK---------PELDI 116 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d--------~p~vV~gVN~~~-~~---------~~~~I 116 (306)
.++|+||.|+|...+++.++.. ++|+ +|||.+++ + +|.++|++|.+. |. ...++
T Consensus 103 ~~~DvVf~Alp~~~s~~i~~~~-~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~~~~i 179 (381)
T PLN02968 103 SDVDAVFCCLPHGTTQEIIKAL-PKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIKSARL 179 (381)
T ss_pred cCCCEEEEcCCHHHHHHHHHHH-hCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhcCCCE
Confidence 4899999999999999999984 7787 89999986 3 688999999875 43 23579
Q ss_pred EEcCChhhhhhhhhhHHHhhhcCe--eEEEEeeeeccCCcc-ccccCCCcccc-ccccccccccccCCCChhHHHHhhhc
Q 021899 117 VSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQ-KTVDGPSMKDW-RGGRAASFNIIPSSTGAAKAVGKVLP 192 (306)
Q Consensus 117 Vsn~sCtT~~Lap~lk~L~~~fgI--~~~~~tT~ha~t~~q-~~~D~~~~~d~-r~~r~~a~NiiP~~tG~ak~~~kvlp 192 (306)
|+||+|.|++++..|+||+++++| +++.++|++++||+| +++++.+.... ..-|+.++|..|+..-..+...+++.
T Consensus 180 IAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~pEie~~~~~~~~ 259 (381)
T PLN02968 180 VANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEIEQGLADAAG 259 (381)
T ss_pred EECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcchHHHHHHHHhC
Confidence 999999999999999999999999 789999999999999 44443121111 11367788888877332222333321
Q ss_pred ccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHh-ccCcccccccccCcceEeeccCCCCceeEEeCCCce
Q 021899 193 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE-SEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 271 (306)
Q Consensus 193 el~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a-~~~~lkgil~~~e~~~VS~d~~~~~~s~i~d~~~~~ 271 (306)
.+.+++.+++|||+++||+..++++++++++.+++.++|+++ +..++-.++.-.+-|-. .+-.|..+..| +.
T Consensus 260 -~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~~~~~~~P~~-~~v~gtn~~~i-----g~ 332 (381)
T PLN02968 260 -SKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVLERGAVPHT-DHVRGSNYCEL-----NV 332 (381)
T ss_pred -CCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEeCCCCCCCCh-HHHCCCCcEEE-----EE
Confidence 233599999999999999999999999999999999999995 44454444321111211 13334332222 11
Q ss_pred ee--cCCeEEEEEEeCCC-chhHhhHHHHHHHH
Q 021899 272 AL--SKNFVKLVSWYDNE-WGYSSRVIDLIVHM 301 (306)
Q Consensus 272 ~~--~~~~~k~~~WyDnE-~gy~~r~~d~~~~~ 301 (306)
.. ..+.+.+++=-||= .|=|-+-+-.++.|
T Consensus 333 ~~~~~~~~l~~~~~~DNL~KGAAgqAVQ~~nl~ 365 (381)
T PLN02968 333 FADRIPGRAIIISVIDNLVKGASGQAVQNLNLM 365 (381)
T ss_pred EEeCCCCEEEEEEEeccHHHHHHHHHHHHHHHH
Confidence 12 23456666668884 24444444444444
No 38
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.81 E-value=3.6e-20 Score=168.27 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=152.1
Q ss_pred eCceeEEECC------------EeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC---
Q 021899 32 KDEKTLLFGE------------KPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--- 96 (306)
Q Consensus 32 ~~g~~l~~~g------------~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~--- 96 (306)
+.||...+.| ..+.|... +++. +.+.|+||+..+...+.|..+.+.++|. +|+|+++.
T Consensus 41 SAGK~ya~a~~wkqt~~lp~~~~e~~V~ec-~~~~----F~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRr 113 (361)
T KOG4777|consen 41 SAGKRYAFAGNWKQTDLLPESAHEYTVEEC-TADS----FNECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRR 113 (361)
T ss_pred ccCCceEecccchhcccccchhhhhhHhhc-Chhh----cccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhccc
Confidence 5677888888 34555433 2332 3489999999999999999999999999 99999875
Q ss_pred --CCCeEEcccCccccCC-----------CCCEEEcCChhhhhhhhhhHHHhhhcC-eeEEEEeeeeccCCccc--cccC
Q 021899 97 --DAPMFVVGVNEKEYKP-----------ELDIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQK--TVDG 160 (306)
Q Consensus 97 --d~p~vV~gVN~~~~~~-----------~~~IVsn~sCtT~~Lap~lk~L~~~fg-I~~~~~tT~ha~t~~q~--~~D~ 160 (306)
++|+|||+||+|.++. ..-||+|+||+|..+++.|||||++|| |++..++||||+||+|. ++.
T Consensus 114 e~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apgv~- 192 (361)
T KOG4777|consen 114 EDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPGVE- 192 (361)
T ss_pred CCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCCch-
Confidence 5999999999999864 134999999999999999999999995 99999999999999993 222
Q ss_pred CCccccccccccccccccCCCChh----HHHHhhhcccC-----------CceEEEEEeeccCcceEEEEEEEecCC--C
Q 021899 161 PSMKDWRGGRAASFNIIPSSTGAA----KAVGKVLPALN-----------GKLTGMSFRVPTVDVSVVDLTVRLEKE--A 223 (306)
Q Consensus 161 ~~~~d~r~~r~~a~NiiP~~tG~a----k~~~kvlpel~-----------gki~~~avRVPv~~gs~~dltv~~~~~--~ 223 (306)
.-.+..||+|.+.|.. .+..|+|-.++ .++++.|-|||+.+||..-+..++..+ .
T Consensus 193 --------~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~p 264 (361)
T KOG4777|consen 193 --------LVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMP 264 (361)
T ss_pred --------HHHHHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCC
Confidence 2246679999886642 23335554332 157889999999999999999999854 4
Q ss_pred CHHHHHHHHHHhccC
Q 021899 224 TYEEIKNAIKEESEG 238 (306)
Q Consensus 224 ~~e~i~~~l~~a~~~ 238 (306)
+.+++++++.+..-.
T Consensus 265 a~~qv~~~l~eyv~d 279 (361)
T KOG4777|consen 265 AHAQVVNLLFEYVLD 279 (361)
T ss_pred cHHHHHHHHHhccCC
Confidence 789999999887643
No 39
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.75 E-value=1.8e-17 Score=157.17 Aligned_cols=218 Identities=10% Similarity=0.011 Sum_probs=150.7
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccCccccCC--CCCEEEcCChhhhhhhhhhHH
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLAPLAKV 133 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~ 133 (306)
++|+||+|++...+++++++..++|+ +|||.+++ ++|..+||+|++..+. ..++|+||+|.+++++..|+|
T Consensus 50 ~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC~~Ta~~laL~P 127 (313)
T PRK11863 50 AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGCYPTGAIALLRP 127 (313)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCcHHHHHHHHHHH
Confidence 79999999999999999999999999 89999986 5899999999765443 568999999999999999999
Q ss_pred HhhhcCeeEEEEeeeecc---CCcc-ccccCCCccccccccccccccccCCCC----hhHHHHhhhcccCCceEEEEEee
Q 021899 134 IHDKFGIVEGLMTTVHSI---TATQ-KTVDGPSMKDWRGGRAASFNIIPSSTG----AAKAVGKVLPALNGKLTGMSFRV 205 (306)
Q Consensus 134 L~~~fgI~~~~~tT~ha~---t~~q-~~~D~~~~~d~r~~r~~a~NiiP~~tG----~ak~~~kvlpel~gki~~~avRV 205 (306)
|+++..|++...++++|+ ||+| ++.+..+ .-+. -+..|++|..-| +..|+.+.+..+. ++.-+..-+
T Consensus 128 L~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~---~~~~-~~~~n~~~Y~~~~~HrH~pEi~~~l~~~~-~~~F~Phl~ 202 (313)
T PRK11863 128 LVDAGLLPADYPVSINAVSGYSGGGKAMIAAYE---AAPD-GKAPAFRLYGLGLAHKHLPEMQAHAGLAR-RPIFTPSVG 202 (313)
T ss_pred HHHcCCcccCceEEEEEccccccCCccchHHHh---hhhh-hhccCeeeccCCcCCcchHHHHHHhcccc-CcEEEeeEc
Confidence 999866766556888888 5677 3333321 0011 257799999855 3455555554331 233344457
Q ss_pred ccCcceEEEEEEEe---cCCCCHHHHHHHHHHhccC-cccccccccC-cc--eEeeccCCCCceeEEeCCCceeecCCeE
Q 021899 206 PTVDVSVVDLTVRL---EKEATYEEIKNAIKEESEG-KLKGILGYTE-ED--VVSTDFVGDSRSSIFDAKAGIALSKNFV 278 (306)
Q Consensus 206 Pv~~gs~~dltv~~---~~~~~~e~i~~~l~~a~~~-~lkgil~~~e-~~--~VS~d~~~~~~s~i~d~~~~~~~~~~~~ 278 (306)
|+.+|++..+++++ +++++.+++.++++++-++ |+--++...+ .| .-+...+..+..|-+ .....-.++.+
T Consensus 203 p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~~~~~~~~~p~~~~v~gtn~~~i--~v~~~~~~~~~ 280 (313)
T PRK11863 203 NFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPLDESAALDFLDPEALNGTNRLEL--FVFGNEDHGQA 280 (313)
T ss_pred cccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecCCcccccCCCCHHHhCCCCeEEE--EEEEcCCCCEE
Confidence 99999999999997 8889999999999987553 4433432221 11 112221212222211 11111124568
Q ss_pred EEEEEeCCC
Q 021899 279 KLVSWYDNE 287 (306)
Q Consensus 279 k~~~WyDnE 287 (306)
++++=.||=
T Consensus 281 ~v~s~iDNL 289 (313)
T PRK11863 281 VLVARLDNL 289 (313)
T ss_pred EEEEEcccc
Confidence 888889985
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.68 E-value=5.8e-16 Score=146.32 Aligned_cols=178 Identities=7% Similarity=0.013 Sum_probs=137.7
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccCccccCC--CCCEEEcCChhhhhhhhhhHH
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLAPLAKV 133 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~ 133 (306)
++|+||+|++...++++++.+.++|+ .|||.+++ +.|..+||+|++..+. ..++|+||+|.+++++.+|+|
T Consensus 49 ~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa~~LaL~P 126 (310)
T TIGR01851 49 AADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYPTGFIALMRP 126 (310)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHHHHHHHHHHH
Confidence 69999999999999999999999999 89999976 5899999998775543 568999999999999999999
Q ss_pred HhhhcCeeEEEEeeeeccCC---cc-ccccCCCccccccccccccccccCCCC----hhHHHHhhhcccCCceEEEEEee
Q 021899 134 IHDKFGIVEGLMTTVHSITA---TQ-KTVDGPSMKDWRGGRAASFNIIPSSTG----AAKAVGKVLPALNGKLTGMSFRV 205 (306)
Q Consensus 134 L~~~fgI~~~~~tT~ha~t~---~q-~~~D~~~~~d~r~~r~~a~NiiP~~tG----~ak~~~kvlpel~gki~~~avRV 205 (306)
|+++..|++...++++|+|| +| ++.++.+ +..++. -...|+-|..-+ +..|+...+... -++.-+..-+
T Consensus 127 L~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~-~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~~v~FtPhl~ 203 (310)
T TIGR01851 127 LVEAGILPADFPITINAVSGYSGGGKAMIADYE-QGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-LPPIFTPAVG 203 (310)
T ss_pred HHHcCCccccceEEEEeccccCccChhhhHHhh-hcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-CCEEEEeEEc
Confidence 99987787776799999987 66 3333332 111111 235677777643 345555544332 3578888899
Q ss_pred ccCcceEEEEEEEe---cCCCCHHHHHHHHHHhccC-ccccc
Q 021899 206 PTVDVSVVDLTVRL---EKEATYEEIKNAIKEESEG-KLKGI 243 (306)
Q Consensus 206 Pv~~gs~~dltv~~---~~~~~~e~i~~~l~~a~~~-~lkgi 243 (306)
|...|-+..+++++ +++++.+++.++++++=++ |+--+
T Consensus 204 p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv 245 (310)
T TIGR01851 204 NFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRV 245 (310)
T ss_pred cccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 99999999999999 8889999999999985443 44333
No 41
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.32 E-value=1.1e-12 Score=115.77 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=83.0
Q ss_pred hHHHhhh-cCeeEEEEeeeeccCCccc-cccCCC-----------ccccccccccccccccCCCC-------hhHHHHhh
Q 021899 131 AKVIHDK-FGIVEGLMTTVHSITATQK-TVDGPS-----------MKDWRGGRAASFNIIPSSTG-------AAKAVGKV 190 (306)
Q Consensus 131 lk~L~~~-fgI~~~~~tT~ha~t~~q~-~~D~~~-----------~~d~r~~r~~a~NiiP~~tG-------~ak~~~kv 190 (306)
|+||+++ ++++++.++|+|++||+|+ +++++. .++-.+.+++++|++|+..+ ..+++.+.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899998 9999999999999999994 343321 12334567899999999944 45566555
Q ss_pred hccc------CCceEEEEEeeccCcceEEEEEEEec-CCCCHHHHHHHHHHh
Q 021899 191 LPAL------NGKLTGMSFRVPTVDVSVVDLTVRLE-KEATYEEIKNAIKEE 235 (306)
Q Consensus 191 lpel------~gki~~~avRVPv~~gs~~dltv~~~-~~~~~e~i~~~l~~a 235 (306)
+-+. ..+++.+|+|||+++||+..++++++ ++.+.+++.++|.+.
T Consensus 81 ~~~~~~~l~~~~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 81 IAETRKILGFPPRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKG 132 (184)
T ss_dssp HHHHHHHCTETTEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred hccccceeeccccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCC
Confidence 5442 12799999999999999999999995 888888888888876
No 42
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.29 E-value=1.7e-11 Score=115.70 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=83.5
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-CCCeEEcccCccccCC--CCCEEEcCChhhhhhhhhhHHHhhh
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLAPLAKVIHDK 137 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~ 137 (306)
++|+||+|||....++.+++++++|+ .|||..++ +.|++||+||.+.+.. ..++|+||+|+|++++.+|+++++.
T Consensus 70 dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~Al~~v~~~ 147 (302)
T PRK08300 70 DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVSRVAPV 147 (302)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHHHhcccCcC
Confidence 79999999999999999999999999 88888776 7999999999998754 4689999999999999999998755
Q ss_pred cCeeEEEEeeeeccC-Ccc--ccccC
Q 021899 138 FGIVEGLMTTVHSIT-ATQ--KTVDG 160 (306)
Q Consensus 138 fgI~~~~~tT~ha~t-~~q--~~~D~ 160 (306)
++.++. +||++.| |.+ ..+|+
T Consensus 148 -~~~eIv-at~~s~s~g~gtr~nidE 171 (302)
T PRK08300 148 -HYAEIV-ASIASKSAGPGTRANIDE 171 (302)
T ss_pred -ceeeee-eeehhhccCCcccccHHH
Confidence 888887 9999988 444 44453
No 43
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.90 E-value=2.1e-09 Score=101.14 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=109.8
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCC-CCCCeEEcccCccccCC--CCCEEEcCChhhhhhhhhhHHHhhh
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLAPLAKVIHDK 137 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps-~d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~ 137 (306)
++|+|++||+.....+.+..++++|+ .||+..+ +..|++||+||.+.... ..++|++++|.|+.++..++++++.
T Consensus 64 dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~~al~r~~d~ 141 (285)
T TIGR03215 64 DIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAISRVAPV 141 (285)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHHHHHHHhhcc
Confidence 79999999999999999999999998 6676655 57999999999888654 4789999999999999999999988
Q ss_pred cCeeEEEEeeeeccCC-cc--ccccCCCccccc---------cccccccccccCC-------------CCh-----hHHH
Q 021899 138 FGIVEGLMTTVHSITA-TQ--KTVDGPSMKDWR---------GGRAASFNIIPSS-------------TGA-----AKAV 187 (306)
Q Consensus 138 fgI~~~~~tT~ha~t~-~q--~~~D~~~~~d~r---------~~r~~a~NiiP~~-------------tG~-----ak~~ 187 (306)
..+ ..++||++.|+ .+ ..+|++....|| +++ +..++=|.. .+. ...+
T Consensus 142 ~~~--~iv~ti~s~S~g~g~r~~idel~~~t~~~~~~~gG~~~~k-~~~~~~~a~p~~~~~~~~~~~~~~~~~~~~~~~~ 218 (285)
T TIGR03215 142 HYA--EIVASIASRSAGPGTRANIDEFTETTSRALEQVGGAKKGK-AIIILNPAEPPLMMRDTIYCLVEDPDEDAIEASV 218 (285)
T ss_pred ccE--EEEEEEEeeccCCCchhHHHHHHHHHHHHHHHcCCcccce-EEEEecCCCCCccceeeEEEecCCCCHHHHHHHH
Confidence 766 56788999995 53 555654322222 222 233343443 111 1223
Q ss_pred HhhhcccCCceEEEEEee-ccCcceEEEEEEEecCC
Q 021899 188 GKVLPALNGKLTGMSFRV-PTVDVSVVDLTVRLEKE 222 (306)
Q Consensus 188 ~kvlpel~gki~~~avRV-Pv~~gs~~dltv~~~~~ 222 (306)
..+..+.+.-+-|-.++. |+|.+.-+.+.++.+..
T Consensus 219 ~~~~~~~~~~vpgy~~~~~~~~~~~~~~~~~~v~~~ 254 (285)
T TIGR03215 219 EEMVAEVQKYVPGYRLKQEPQFDGLRVSVFLEVEGA 254 (285)
T ss_pred HHHHHHHHhhCCCEEeeeceEEeCcEEEEEEEEecC
Confidence 334444443344444444 66678878888877653
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.84 E-value=1.8e-07 Score=89.46 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=145.0
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC---CC------------------CeEE---cccCccccCCCC
Q 021899 59 KTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DA------------------PMFV---VGVNEKEYKPEL 114 (306)
Q Consensus 59 ~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~---d~------------------p~vV---~gVN~~~~~~~~ 114 (306)
..++|+||.|++...+++.++..++.|+ .|||.|.+ ++ .--| ||.|.+++. ..
T Consensus 68 ~~~~DvvFlalPhg~s~~~v~~l~~~g~--~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~-~A 144 (349)
T COG0002 68 LDECDVVFLALPHGVSAELVPELLEAGC--KVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIR-GA 144 (349)
T ss_pred cccCCEEEEecCchhHHHHHHHHHhCCC--eEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHh-cC
Confidence 3468999999999999999999999999 59999865 10 1222 456666665 45
Q ss_pred CEEEcCChhhhhhhhhhHHHhhhc--CeeE-EEEeeeeccCCccccccCCCccccccccccccccccCC-C--ChhHHHH
Q 021899 115 DIVSNASCTTNCLAPLAKVIHDKF--GIVE-GLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS-T--GAAKAVG 188 (306)
Q Consensus 115 ~IVsn~sCtT~~Lap~lk~L~~~f--gI~~-~~~tT~ha~t~~q~~~D~~~~~d~r~~r~~a~NiiP~~-t--G~ak~~~ 188 (306)
+.|+||.|-.++...+|+||-+.- ..+. ..+-..-.+||+|+..-.. ..+. ....|+.|.. + -+..|+.
T Consensus 145 ~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~----~~~~-e~~~~~~~Y~~~~HrH~pEi~ 219 (349)
T COG0002 145 KLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVK----NHFP-EVNDSLRPYGLTGHRHTPEIE 219 (349)
T ss_pred CEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcccc----ccch-hhccccccccccccCchHHHH
Confidence 799999999999999999998762 2355 3566667788888433211 1111 2345888887 3 3455655
Q ss_pred hhhcccC---CceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHHhccC-cccccccccCcceEeeccCCCCceeE
Q 021899 189 KVLPALN---GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG-KLKGILGYTEEDVVSTDFVGDSRSSI 264 (306)
Q Consensus 189 kvlpel~---gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~a~~~-~lkgil~~~e~~~VS~d~~~~~~s~i 264 (306)
.-+..+. ..+.-+..-+|...|-+..+++.+++.++.+|+.+++++.=++ |+--|.....-|-+ -+.+|..+--|
T Consensus 220 q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~-k~V~GsN~cdI 298 (349)
T COG0002 220 QHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDT-KAVAGSNFCDI 298 (349)
T ss_pred HHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCCh-hhhcCCcceEE
Confidence 5555554 3477788889999999999999999999999999999886544 33333321111111 12344443222
Q ss_pred EeCCCceeecC--CeEEEEEEeCCC
Q 021899 265 FDAKAGIALSK--NFVKLVSWYDNE 287 (306)
Q Consensus 265 ~d~~~~~~~~~--~~~k~~~WyDnE 287 (306)
+ ...++ +.+-+++=.||=
T Consensus 299 ---g--f~~d~~~~rvvvvsaIDNL 318 (349)
T COG0002 299 ---G--FAVDERTGRVVVVSAIDNL 318 (349)
T ss_pred ---E--EEEcCCCCEEEEEEEeccc
Confidence 2 23332 567888888884
No 45
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.75 E-value=9.5e-06 Score=66.50 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=44.2
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-----CCCeEEcccCccccC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK 111 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-----d~p~vV~gVN~~~~~ 111 (306)
.++|+||+|++...+++.++.++++|+ .|||+++. +.|+++||+|.+.+.
T Consensus 65 ~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 65 SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 489999999999999999999999999 99999986 589999999998764
No 46
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0037 Score=57.62 Aligned_cols=217 Identities=18% Similarity=0.196 Sum_probs=123.0
Q ss_pred ccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC--CCC--eEE---cccCccc-cCCCCCEEEcCChhhhh----hhh
Q 021899 62 AEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAP--MFV---VGVNEKE-YKPELDIVSNASCTTNC----LAP 129 (306)
Q Consensus 62 vdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~--d~p--~vV---~gVN~~~-~~~~~~IVsn~sCtT~~----Lap 129 (306)
+|..+.+-+.-.-+.+...-..+--|-++|+-+.. -.| -.+ ||+|+.. +. ..+.|+||.|-.+. |.|
T Consensus 87 vd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPGCYaTgsQl~l~P 165 (340)
T KOG4354|consen 87 VDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPGCYATGSQLPLVP 165 (340)
T ss_pred eeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCCcccccCcccchH
Confidence 45555555554444444444445556788887643 144 444 4667433 44 35789999997665 455
Q ss_pred hhHHHhhhcCeeEEEEeeeeccCCccccccCCCccccccccccccccccCC-CChhHHHHhhhcccCCceEEEEEeeccC
Q 021899 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS-TGAAKAVGKVLPALNGKLTGMSFRVPTV 208 (306)
Q Consensus 130 ~lk~L~~~fgI~~~~~tT~ha~t~~q~~~D~~~~~d~r~~r~~a~NiiP~~-tG~ak~~~kvlpel~gki~~~avRVPv~ 208 (306)
++|.+.- .-. +-.+-.|||+|.. +..++ ...-++.|+||.. |.+ ..+..+--.++-.+..+---.|-+
T Consensus 166 llk~i~g---~p~--ifgvSGySGAGtk---pspkN--d~~~l~nnlipY~ltdH-iHerEIs~r~k~~VaF~PHv~qwf 234 (340)
T KOG4354|consen 166 LLKAILG---KPE--IFGVSGYSGAGTK---PSPKN--DYSELANNLIPYGLTDH-IHEREISQRSKVTVAFTPHVMQWF 234 (340)
T ss_pred HHHHhcC---Ccc--eeeeccccCCCCC---CCCcc--CHHHHhcCCcccccccc-chhHhHHHhhCCceeechhHHHHh
Confidence 5555432 221 3444567777743 22121 2335799999987 332 222222223333344444445778
Q ss_pred cceEEEEEEEecCCCCHHHHHHHHHHhccC-cccccccccCcceEeeccCCCCceeEEeCCCceeecCCeEEEEEEeCCC
Q 021899 209 DVSVVDLTVRLEKEATYEEIKNAIKEESEG-KLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE 287 (306)
Q Consensus 209 ~gs~~dltv~~~~~~~~e~i~~~l~~a~~~-~lkgil~~~e~~~VS~d~~~~~~s~i~d~~~~~~~~~~~~k~~~WyDnE 287 (306)
.|-...+++.+++.++.||+++.++..=++ +|--++ .|-|+| -|..|..|-.+ ++...-..|+.+-+++=-||-
T Consensus 235 qGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~--ddvPlv-kdv~gsh~v~~--ggF~~~~~g~Ravii~tIDNL 309 (340)
T KOG4354|consen 235 QGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVL--DDVPLV-KDVRGSHYVHM--GGFPDRIPGDRAVIISTIDNL 309 (340)
T ss_pred hhceEEEEEeecCcccHHHHHHHHHhhccCcceeeee--ccccce-eccCCcceeEe--ccccCCCCCceEEEEEehhhh
Confidence 888889999999999999999999987665 344333 223443 24455433222 222222335557777778874
Q ss_pred c-hhHhhHH
Q 021899 288 W-GYSSRVI 295 (306)
Q Consensus 288 ~-gy~~r~~ 295 (306)
- |=|.+-+
T Consensus 310 lKGAatQaL 318 (340)
T KOG4354|consen 310 LKGAATQAL 318 (340)
T ss_pred hhhHHHHHH
Confidence 3 4444443
No 47
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.15 E-value=0.0068 Score=49.28 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=42.4
Q ss_pred CCCccCCccEEEEecCCCCCHHHH---HHHHhCCCCeEEeeCCCC-----CCCeEEcccCccccC
Q 021899 55 IPWAKTGAEYVVESTGVFTDKDKA---AAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK 111 (306)
Q Consensus 55 ~~w~~~gvdiV~e~tG~~~s~e~a---~~h~~aGakkvvIsaps~-----d~p~vV~gVN~~~~~ 111 (306)
..|...+.|+||.|++.....+.. ..+++.|+ +|||.++. |.|+++|++|.+.++
T Consensus 59 ~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 59 EDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred CChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence 345556899999999998887743 33446777 99999876 589999999987653
No 48
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.66 E-value=0.12 Score=46.73 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=54.4
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-CCCeEEcccCccc-cCC-CCCEEEcCChhhhhhhhhhHHHh
Q 021899 59 KTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKE-YKP-ELDIVSNASCTTNCLAPLAKVIH 135 (306)
Q Consensus 59 ~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-d~p~vV~gVN~~~-~~~-~~~IVsn~sCtT~~Lap~lk~L~ 135 (306)
+.++|+|||+|.....+..++++.++|. -.||...+ =-|-+||-+|.+. ++. .-+.|. |-..+-.|++....
T Consensus 69 ~~di~lvfdatsa~~h~~~a~~~ae~gi--~~idltpaaigp~vvp~~n~~eh~~a~nvnmvt---cggqatipiv~avs 143 (310)
T COG4569 69 FADIDLVFDATSAGAHVKNAAALAEAGI--RLIDLTPAAIGPYVVPVVNLEEHVDALNVNMVT---CGGQATIPIVAAVS 143 (310)
T ss_pred CCCcceEEeccccchhhcchHhHHhcCC--ceeecchhccCCeeccccchHHhcCCCCcceEe---ecCcccchhhhhhh
Confidence 4578899999999999999999999999 56776554 4799999999876 442 345564 55555556655544
Q ss_pred h
Q 021899 136 D 136 (306)
Q Consensus 136 ~ 136 (306)
+
T Consensus 144 r 144 (310)
T COG4569 144 R 144 (310)
T ss_pred h
Confidence 4
No 49
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=82.77 E-value=1.2 Score=35.63 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=25.7
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
..|+|+|||+.....+..+.++++|. -||+++
T Consensus 59 ~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~n 90 (117)
T PF03447_consen 59 DIDVVVECTSSEAVAEYYEKALERGK--HVVTAN 90 (117)
T ss_dssp T-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES-
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCC--eEEEEC
Confidence 69999999999888899999999999 666654
No 50
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=61.92 E-value=7 Score=36.71 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=50.9
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCC-CCCCeEEcccCccccC---CCCCEEEcCChhhhhhhhhhHHHhh
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAPMFVVGVNEKEYK---PELDIVSNASCTTNCLAPLAKVIHD 136 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps-~d~p~vV~gVN~~~~~---~~~~IVsn~sCtT~~Lap~lk~L~~ 136 (306)
..|+|+||+|...-++++++.+++|+.-+++|-.. +|.- ...+..+ ....-|--||-..-.|--+ +.. .
T Consensus 62 ~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~-----~~~~l~~~A~~~g~~i~ipSGAigGlD~l-~aa-~ 134 (267)
T PRK13301 62 RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDA-----LRARLIAAAEAGGARIRVPAGAIAGLDYL-QAV-A 134 (267)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHH-----HHHHHHHHHHhCCCEEEEeChHHHhHHHH-HHh-h
Confidence 69999999999999999999999999866665332 2411 1111111 1122333455555554332 221 3
Q ss_pred hcCeeEEEEeeeec
Q 021899 137 KFGIVEGLMTTVHS 150 (306)
Q Consensus 137 ~fgI~~~~~tT~ha 150 (306)
..|++++.+||--.
T Consensus 135 ~~~~~~v~~~t~K~ 148 (267)
T PRK13301 135 GRDDAEVVYESRKP 148 (267)
T ss_pred ccCceEEEEEEecC
Confidence 47899988887743
No 51
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=56.87 E-value=25 Score=26.38 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=37.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhccC--cccccccccCcc--eEeeccCCCCce
Q 021899 214 DLTVRLEKEATYEEIKNAIKEESEG--KLKGILGYTEED--VVSTDFVGDSRS 262 (306)
Q Consensus 214 dltv~~~~~~~~e~i~~~l~~a~~~--~lkgil~~~e~~--~VS~d~~~~~~s 262 (306)
.++++...+.+.+++.+.|++-..+ ++||++...+.+ .+..+++++.++
T Consensus 3 s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 3 SFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 5677788999999999999887644 689999887764 456666766543
No 52
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=53.49 E-value=29 Score=26.24 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=34.4
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhccC--cccccccccCc-ceEeeccCCCCce
Q 021899 213 VDLTVRLEKEATYEEIKNAIKEESEG--KLKGILGYTEE-DVVSTDFVGDSRS 262 (306)
Q Consensus 213 ~dltv~~~~~~~~e~i~~~l~~a~~~--~lkgil~~~e~-~~VS~d~~~~~~s 262 (306)
..++++.+++++.+.+.+.|.+...+ +.||++.+.++ ...-.+..++...
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~ 54 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGRYD 54 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCEEE
Confidence 36788999999999999999995554 57999988876 3555555655433
No 53
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=49.74 E-value=14 Score=34.14 Aligned_cols=87 Identities=18% Similarity=0.097 Sum_probs=53.6
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCCCCCeE------EcccCccccCCCCCEEEcCChhhhhhhhhhHH
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMF------VVGVNEKEYKPELDIVSNASCTTNCLAPLAKV 133 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~d~p~v------V~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~ 133 (306)
..+|+++||++...-++++++.+++|+.-+|+|-..--+|-+ ++.. ...-|--||-..-+|-- |+.
T Consensus 59 ~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~-------~~~rv~~pSGAiGGlD~-l~a 130 (255)
T COG1712 59 AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKC-------GGARVYLPSGAIGGLDA-LAA 130 (255)
T ss_pred hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhc-------CCcEEEecCccchhHHH-HHH
Confidence 589999999999999999999999999878877543111111 1111 12223334444333222 122
Q ss_pred HhhhcCeeEEEEeeeeccCCcc
Q 021899 134 IHDKFGIVEGLMTTVHSITATQ 155 (306)
Q Consensus 134 L~~~fgI~~~~~tT~ha~t~~q 155 (306)
+ ..-+|+++..||.-.....|
T Consensus 131 a-r~g~i~~V~lttrKpp~~lg 151 (255)
T COG1712 131 A-RVGGIEEVVLTTRKPPAELG 151 (255)
T ss_pred h-hcCCeeEEEEEeecChHHhC
Confidence 2 23579999999887665444
No 54
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=47.21 E-value=41 Score=25.66 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=26.9
Q ss_pred EEEEecCCCCHHHHHH-HHHHhccCcccccccccCcce
Q 021899 215 LTVRLEKEATYEEIKN-AIKEESEGKLKGILGYTEEDV 251 (306)
Q Consensus 215 ltv~~~~~~~~e~i~~-~l~~a~~~~lkgil~~~e~~~ 251 (306)
++++..+..+..+|++ +|++|..-||-+.|+=.++-+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~ 39 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSYI 39 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGEE
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcEE
Confidence 4667788899999998 788888889988886544433
No 55
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=44.78 E-value=21 Score=33.16 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=48.4
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-CCCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhc
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKF 138 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-d~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~f 138 (306)
..+|+|+|||+.....+.+..++++|.. |++-.|.+ .++-+-..+....-....++.- ++... ....+++.. +..
T Consensus 60 ~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~-gg~d~l~~~-~~g 135 (265)
T PRK13303 60 QRPDLVVECAGHAALKEHVVPILKAGID-CAVISVGALADEALRERLEQAAEAGGARLHL-LSGAI-GGIDALAAA-KEG 135 (265)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHh-hCHHHHHHH-HhC
Confidence 4699999999999888999999999974 55544432 1111111111111111122221 22222 334444432 457
Q ss_pred CeeEEEEeeeecc
Q 021899 139 GIVEGLMTTVHSI 151 (306)
Q Consensus 139 gI~~~~~tT~ha~ 151 (306)
|++.+.+++.+.-
T Consensus 136 ~~~~v~~~~~k~p 148 (265)
T PRK13303 136 GLDEVTYTGRKPP 148 (265)
T ss_pred CceEEEEEEecCh
Confidence 7999988877643
No 56
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=44.41 E-value=8.2 Score=30.75 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 95 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps 95 (306)
.++|+||||+|.....+.+-..++.|.+-+++..++
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 489999999997667777777888777666666655
No 57
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=41.32 E-value=1.4e+02 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEee
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 92 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIs 92 (306)
.++|+|+-||+.....+.+...+++|. -|||
T Consensus 59 ~~iDVViIctPs~th~~~~~~~L~aG~--NVV~ 89 (324)
T TIGR01921 59 DDVDVLILCMGSATDIPEQAPYFAQFA--NTVD 89 (324)
T ss_pred cCCCEEEEcCCCccCHHHHHHHHHcCC--CEEE
Confidence 479999999999999999999999998 4554
No 58
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.26 E-value=1.5e+02 Score=21.14 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=38.4
Q ss_pred ccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCCCHHHHHHHHHH
Q 021899 177 IPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKE 234 (306)
Q Consensus 177 iP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~~~e~i~~~l~~ 234 (306)
||-..|+=+.+..++.+ +..|+-...|-.-.....+.+.+++..+-..+++.+.|++
T Consensus 5 ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 5 FPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 56667876667777777 6778877777665555556677777655556666666655
No 59
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=38.21 E-value=29 Score=31.70 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=28.1
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
++|+|++||+...-.+.+.+++++|.. |++-.+
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGkh-Vl~~s~ 69 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGKD-LLIMSV 69 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCC-EEEECC
Confidence 699999999999999999999999975 444334
No 60
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=34.79 E-value=67 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=22.6
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
.++|+||||+|.....+.+-..++.|.+-+++..+
T Consensus 237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 237 GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 36899999999755555566667666533334333
No 61
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=34.20 E-value=84 Score=28.67 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=40.9
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCCCCCeEEcccCcccc-CCCCCEEEcCChhhhhhhhhhHHHhh
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEY-KPELDIVSNASCTTNCLAPLAKVIHD 136 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~d~p~vV~gVN~~~~-~~~~~IVsn~sCtT~~Lap~lk~L~~ 136 (306)
.++|+||||+|...+.+.+-.+++.|.+-+++.......+ +.+|...+ .++..|+..-..+...+..+++.|.+
T Consensus 186 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~ 260 (280)
T TIGR03366 186 RGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGP---VALDPEQVVRRWLTIRGVHNYEPRHLDQAVRFLAA 260 (280)
T ss_pred CCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCc---eeeCHHHHHhCCcEEEecCCCCHHHHHHHHHHHHh
Confidence 3689999999976666667777777764444443321112 12333332 22345555444444455566666654
No 62
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.03 E-value=47 Score=33.44 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=46.4
Q ss_pred cCCCCCH------HHHHHHHhCCCCeEEeeCCCCCCCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeE
Q 021899 69 TGVFTDK------DKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVE 142 (306)
Q Consensus 69 tG~~~s~------e~a~~h~~aGakkvvIsaps~d~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~ 142 (306)
-|...|+ +.++..+++|+|-+++.+ .|-..|..+.+= . ...|+-+|+-|.+--|+.+
T Consensus 167 RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~g-----------qdv~aYG~D~~~----~--~~~l~~Ll~~l~~I~G~~r 229 (437)
T COG0621 167 RGKERSRPPEDILKEVKRLVAQGVKEIVLTG-----------QDVNAYGKDLGG----G--KPNLADLLRELSKIPGIER 229 (437)
T ss_pred CCCccCCCHHHHHHHHHHHHHCCCeEEEEEE-----------EehhhccccCCC----C--ccCHHHHHHHHhcCCCceE
Confidence 4566664 466788899999888864 333344322110 1 3458889999999888999
Q ss_pred EEEeeeeccC
Q 021899 143 GLMTTVHSIT 152 (306)
Q Consensus 143 ~~~tT~ha~t 152 (306)
+.++++|+.-
T Consensus 230 iR~~~~~P~~ 239 (437)
T COG0621 230 IRFGSSHPLE 239 (437)
T ss_pred EEEecCCchh
Confidence 9999999843
No 63
>PRK06270 homoserine dehydrogenase; Provisional
Probab=32.88 E-value=61 Score=31.21 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=46.4
Q ss_pred CCccEEEEecCCCCC-----HHHHHHHHhCCCCeEEeeCCCCCCCeEEcccCccccCC---CCCEEEcCChhhhhhhhhh
Q 021899 60 TGAEYVVESTGVFTD-----KDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP---ELDIVSNASCTTNCLAPLA 131 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s-----~e~a~~h~~aGakkvvIsaps~d~p~vV~gVN~~~~~~---~~~IVsn~sCtT~~Lap~l 131 (306)
.++|+|++||+.... .+....++++|. -||++.-+ |+-. +.+.+.. +.++.---.++...-.|++
T Consensus 88 ~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVtaNK~--pla~---~~~eL~~~A~~~g~~~~~ea~v~~glPii 160 (341)
T PRK06270 88 VDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTSNKG--PLAL---AYKELKELAKKNGVRFRYEATVGGAMPII 160 (341)
T ss_pred cCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcCCcH--HHHh---hHHHHHHHHHHcCCEEEEeeeeeechhHH
Confidence 468999999987543 678889999998 66664211 1110 1122211 1122112234556678888
Q ss_pred HHHhhhcCeeEEEEeeeec
Q 021899 132 KVIHDKFGIVEGLMTTVHS 150 (306)
Q Consensus 132 k~L~~~fgI~~~~~tT~ha 150 (306)
+.|.+. +....+..++.
T Consensus 161 ~~l~~~--l~g~~I~~I~G 177 (341)
T PRK06270 161 NLAKET--LAGNDIKSIKG 177 (341)
T ss_pred HHHHhh--cccCceEEEEE
Confidence 888765 33444444443
No 64
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=31.76 E-value=43 Score=33.82 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=21.0
Q ss_pred HHHHHhCCCCeEEeeCCCC-CCCeEEc
Q 021899 78 AAAHLKGGAKKVVISAPSK-DAPMFVV 103 (306)
Q Consensus 78 a~~h~~aGakkvvIsaps~-d~p~vV~ 103 (306)
.+.+.++|||||++-.+|+ |+|++=+
T Consensus 632 lq~~~dsgakkv~lp~ssa~~i~tvp~ 658 (683)
T COG4930 632 LQLAFDSGAKKVLLPMSSAVDIPTVPA 658 (683)
T ss_pred HHHHHhcCCceEEEeccccCCcCCCCH
Confidence 4567789999999999988 7877644
No 65
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.47 E-value=26 Score=31.49 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=35.8
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCeEEeeCCCCCCCeEEcccCccccCC--CCCEEEcCChhhh
Q 021899 65 VVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTN 125 (306)
Q Consensus 65 V~e~tG~~~s~e~a~~h~~aGakkvvIsaps~d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~ 125 (306)
++--.|.-++.+.++.++++||+ +++| |+.|++.++- +..+..-|.|.|-
T Consensus 56 ~~vGAGTVl~~e~a~~ai~aGA~-FivS----------P~~~~~vi~~a~~~~i~~iPG~~Tp 107 (201)
T PRK06015 56 AIVGAGTILNAKQFEDAAKAGSR-FIVS----------PGTTQELLAAANDSDVPLLPGAATP 107 (201)
T ss_pred CEEeeEeCcCHHHHHHHHHcCCC-EEEC----------CCCCHHHHHHHHHcCCCEeCCCCCH
Confidence 33456888999999999999996 7775 3445554432 5678888888773
No 66
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.86 E-value=37 Score=30.98 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=36.4
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCeEEeeCCCCCCCeEEcccCccccCC--CCCEEEcCChhhhh
Q 021899 65 VVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTNC 126 (306)
Q Consensus 65 V~e~tG~~~s~e~a~~h~~aGakkvvIsaps~d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~ 126 (306)
++-.+|.-++.+.++.++++||+ +++| |+.|++.++. +..|..-|.|.|-.
T Consensus 71 ~~vGaGTVl~~e~a~~a~~aGA~-FiVs----------P~~~~~v~~~~~~~~i~~iPG~~Tps 123 (222)
T PRK07114 71 MILGVGSIVDAATAALYIQLGAN-FIVT----------PLFNPDIAKVCNRRKVPYSPGCGSLS 123 (222)
T ss_pred eEEeeEeCcCHHHHHHHHHcCCC-EEEC----------CCCCHHHHHHHHHcCCCEeCCCCCHH
Confidence 44556889999999999999995 7775 3445454432 46777778887743
No 67
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.07 E-value=1.9e+02 Score=19.67 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=33.2
Q ss_pred cCCCChhHHHHhhhcccCCceEEEEEeecc----CcceEEEEEEEecCCCCHHHHHHHHHH
Q 021899 178 PSSTGAAKAVGKVLPALNGKLTGMSFRVPT----VDVSVVDLTVRLEKEATYEEIKNAIKE 234 (306)
Q Consensus 178 P~~tG~ak~~~kvlpel~gki~~~avRVPv----~~gs~~dltv~~~~~~~~e~i~~~l~~ 234 (306)
|...|.-..+..++.+.+..+.....+-+- ..-..+.++++.......+++.+.|++
T Consensus 6 ~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 455676677778888888888776665432 233445555555432334455555554
No 68
>PRK04435 hypothetical protein; Provisional
Probab=28.26 E-value=2.1e+02 Score=24.10 Aligned_cols=68 Identities=12% Similarity=0.301 Sum_probs=42.7
Q ss_pred cccccccccc-ccCCCChhHHHHhhhcccCCceEEEEEeeccCcceEEEEEEEecCCC-CHHHHHHHHHH
Q 021899 167 RGGRAASFNI-IPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEA-TYEEIKNAIKE 234 (306)
Q Consensus 167 r~~r~~a~Ni-iP~~tG~ak~~~kvlpel~gki~~~avRVPv~~gs~~dltv~~~~~~-~~e~i~~~l~~ 234 (306)
-.+|.+...+ .+...|.-..+..++.+.+..+.....+.|.-....+.++++..... ..+++.+.|++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHc
Confidence 4466666665 55567877778888888888888777777764444556666654332 34444444443
No 69
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=27.18 E-value=61 Score=31.14 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=25.4
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 96 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~ 96 (306)
.|+|+||||+|...+.+.+-.+++.|-+=+++.-+..
T Consensus 237 ~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 4799999999966556666677766654455554443
No 70
>PRK06813 homoserine dehydrogenase; Validated
Probab=27.10 E-value=65 Score=31.36 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=25.3
Q ss_pred CccEEEEecCC-----CCCHHHHHHHHhCCCCeEEeeCC
Q 021899 61 GAEYVVESTGV-----FTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 61 gvdiV~e~tG~-----~~s~e~a~~h~~aGakkvvIsap 94 (306)
..|+|+|||+. ..+.++.+.++++|. -||++.
T Consensus 86 ~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~--hVVTAN 122 (346)
T PRK06813 86 SGTVLVESTVTNLKDGNPGKQYIKQAIEKKM--DIVAIS 122 (346)
T ss_pred CCCEEEECCCCccCCchHHHHHHHHHHHCCC--eEEcCC
Confidence 68999999864 345677788899998 888765
No 71
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=26.72 E-value=43 Score=30.45 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=37.4
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCeEEeeCCCCCCCeEEcccCccccCC--CCCEEEcCChhhhh
Q 021899 65 VVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTNC 126 (306)
Q Consensus 65 V~e~tG~~~s~e~a~~h~~aGakkvvIsaps~d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~ 126 (306)
++=-+|.-++.+.+..+.++||+ +|+| |++|++.+.. ..++.-.|.|.|--
T Consensus 65 ~lIGAGTVL~~~q~~~a~~aGa~-fiVs----------P~~~~ev~~~a~~~~ip~~PG~~Tpt 117 (211)
T COG0800 65 ALIGAGTVLNPEQARQAIAAGAQ-FIVS----------PGLNPEVAKAANRYGIPYIPGVATPT 117 (211)
T ss_pred cEEccccccCHHHHHHHHHcCCC-EEEC----------CCCCHHHHHHHHhCCCcccCCCCCHH
Confidence 34457999999999999999995 6665 5666666543 46677778887744
No 72
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=26.37 E-value=52 Score=27.14 Aligned_cols=32 Identities=34% Similarity=0.766 Sum_probs=25.7
Q ss_pred eCceeEEECCEeEEEEeccCCC---CCCCccCCccEEE
Q 021899 32 KDEKTLLFGEKPVAVFGFRNPE---EIPWAKTGAEYVV 66 (306)
Q Consensus 32 ~~g~~l~~~g~~i~v~~~~~~~---~~~w~~~gvdiV~ 66 (306)
+-| ++.++++..+.+.+++++ .|||. .+|+|.
T Consensus 23 ~yG-kimiGDkaFEFyn~~n~~dyIQIPW~--eI~~V~ 57 (118)
T PF06115_consen 23 KYG-KIMIGDKAFEFYNDRNVEDYIQIPWE--EIDYVI 57 (118)
T ss_pred ccC-eEEEcccceEeecCCChhhcEEeChh--heeEEE
Confidence 557 888999999999888775 68998 678764
No 73
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=26.11 E-value=37 Score=30.57 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=34.3
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCeEEeeCCCCCCCeEEcccCccccCC--CCCEEEcCChhhh
Q 021899 65 VVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTN 125 (306)
Q Consensus 65 V~e~tG~~~s~e~a~~h~~aGakkvvIsaps~d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~ 125 (306)
++--.|.-++.+.++.++++||+ +++| | +.|++.++. +..+..-|.|.|-
T Consensus 60 ~~vGAGTVl~~~~a~~a~~aGA~-Fivs-P---------~~~~~v~~~~~~~~i~~iPG~~Tp 111 (204)
T TIGR01182 60 ALIGAGTVLNPEQLRQAVDAGAQ-FIVS-P---------GLTPELAKHAQDHGIPIIPGVATP 111 (204)
T ss_pred CEEEEEeCCCHHHHHHHHHcCCC-EEEC-C---------CCCHHHHHHHHHcCCcEECCCCCH
Confidence 34456888999999999999996 7665 2 334444332 4567777777763
No 74
>PRK06392 homoserine dehydrogenase; Provisional
Probab=26.02 E-value=81 Score=30.38 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=24.4
Q ss_pred CCccEEEEecCCCC----CHHHHHHHHhCCCCeEEeeCC
Q 021899 60 TGAEYVVESTGVFT----DKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 60 ~gvdiV~e~tG~~~----s~e~a~~h~~aGakkvvIsap 94 (306)
...|+|+|||+... ..+..+.++++|+ -||+++
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~--hVVTaN 116 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGI--DVVTAN 116 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCC--EEEcCC
Confidence 46899999997532 2345588999999 777654
No 75
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=26.01 E-value=1.1e+02 Score=24.96 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=46.9
Q ss_pred ChhHHhhhhhcccccccCCCccEEEeCceeEEEC--CEeEEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhC
Q 021899 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFG--EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 84 (306)
Q Consensus 7 ~~~~~ayll~yDS~hg~~~~~~v~~~~g~~l~~~--g~~i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~a 84 (306)
+++..-|--.||+..|+.. .-+....+..+.+. ++.|.+.+ |=.|-+|.+.+|...+....+.++
T Consensus 42 ~~~~f~~~a~~~~~~~r~e-~~l~~~~~~~v~i~~~~~~i~~~~------------GE~I~~e~S~Ky~~~~~~~l~~~a 108 (127)
T PF10017_consen 42 DPEDFEHVARYNPEEGRHE-MYLVAKRDQTVRIGGLDLTIHFKE------------GERIHTENSYKYSPEEFEALAEQA 108 (127)
T ss_pred CHHHCEEEEEEcCCcCEEE-EEEEeCCcEEEEEcCCCceeEECC------------CCEEEEEEeeCcCHHHHHHHHHHC
Confidence 5666777777888888766 45555555466666 44555542 335678899999888888888889
Q ss_pred CC
Q 021899 85 GA 86 (306)
Q Consensus 85 Ga 86 (306)
|-
T Consensus 109 Gl 110 (127)
T PF10017_consen 109 GL 110 (127)
T ss_pred CC
Confidence 97
No 76
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=25.91 E-value=70 Score=29.66 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=28.1
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
..+|+|++||......+.+..++++|.. +|+..+
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVigtt 100 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVR-LVVGTT 100 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCC-EEEECC
Confidence 3689999999999999999999999974 555444
No 77
>PRK08374 homoserine dehydrogenase; Provisional
Probab=25.19 E-value=62 Score=31.19 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=28.0
Q ss_pred cCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 59 KTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 59 ~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
+..+|+++|+|+.....+...++++.|+ -||++.
T Consensus 89 ~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVtan 122 (336)
T PRK08374 89 EIDADIVVDVTNDKNAHEWHLEALKEGK--SVVTSN 122 (336)
T ss_pred cCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEECC
Confidence 3579999999999888888999999998 556543
No 78
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=25.17 E-value=72 Score=29.50 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=26.9
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
++|+|++|++...-.+.+...+++|.. |++..+
T Consensus 61 ~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s~ 93 (265)
T PRK13304 61 DVDLVVECASVNAVEEVVPKSLENGKD-VIIMSV 93 (265)
T ss_pred CCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEch
Confidence 699999999998888999999999864 444333
No 79
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.67 E-value=56 Score=29.51 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=41.2
Q ss_pred EEEecCCCCCHHHHHHHHhCCCCeEEeeCCCCCCCeEEcccCccccCC--CCCEEEcCChhhhhhhhhhHHHhhhcCeeE
Q 021899 65 VVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLAPLAKVIHDKFGIVE 142 (306)
Q Consensus 65 V~e~tG~~~s~e~a~~h~~aGakkvvIsaps~d~p~vV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~ 142 (306)
++-.+|.-++.+.++.++++||+ +++| |+.|++.++. +.+|..-|.|.|-.=+ ...+ ..|.+-
T Consensus 68 ~~vGaGTV~~~~~~~~a~~aGA~-Fivs----------P~~~~~v~~~~~~~~i~~iPG~~T~~E~--~~A~--~~Gad~ 132 (213)
T PRK06552 68 VLIGAGTVLDAVTARLAILAGAQ-FIVS----------PSFNRETAKICNLYQIPYLPGCMTVTEI--VTAL--EAGSEI 132 (213)
T ss_pred eEEeeeeCCCHHHHHHHHHcCCC-EEEC----------CCCCHHHHHHHHHcCCCEECCcCCHHHH--HHHH--HcCCCE
Confidence 34456888999999999999995 6664 3444444432 4567777777765332 2222 355554
Q ss_pred EEE
Q 021899 143 GLM 145 (306)
Q Consensus 143 ~~~ 145 (306)
+-+
T Consensus 133 vkl 135 (213)
T PRK06552 133 VKL 135 (213)
T ss_pred EEE
Confidence 443
No 80
>PRK06349 homoserine dehydrogenase; Provisional
Probab=24.59 E-value=75 Score=31.63 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCccEEEEecCC-CCCHHHHHHHHhCCCCeEEeeC
Q 021899 60 TGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVISA 93 (306)
Q Consensus 60 ~gvdiV~e~tG~-~~s~e~a~~h~~aGakkvvIsa 93 (306)
..+|+|+||||. ....+....++++|. -|+++
T Consensus 71 ~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 71 PDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred CCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 479999999986 345788889999996 55553
No 81
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=24.44 E-value=3.6e+02 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=25.9
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEee
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 92 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIs 92 (306)
++|+|+++|......+.+..++++|.. +|+.
T Consensus 60 ~~DvVid~t~p~~~~~~~~~al~~G~~-vvig 90 (257)
T PRK00048 60 DADVLIDFTTPEATLENLEFALEHGKP-LVIG 90 (257)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcCCC-EEEE
Confidence 689999999888889999999999974 5443
No 82
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.37 E-value=30 Score=34.66 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=44.3
Q ss_pred cccccCCCccEEEeCceeEEECCEeEEEEeccCCCCCCCc----cCCccEEEEecC---C--CCCH---HHHHHHHhCCC
Q 021899 19 SVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWA----KTGAEYVVESTG---V--FTDK---DKAAAHLKGGA 86 (306)
Q Consensus 19 S~hg~~~~~~v~~~~g~~l~~~g~~i~v~~~~~~~~~~w~----~~gvdiV~e~tG---~--~~s~---e~a~~h~~aGa 86 (306)
.|||-|. .. .-++- .|.+.+.++.+. ..+.+-|. ..-+|+|+-|+- . ..++ ..++.++++||
T Consensus 279 ATHg~f~-s~-~p~~S-~l~~~~~~~~~~---~~~~~~~~~~~~~~~vdLvVLSACqTa~g~gd~~a~lGLag~a~~aGa 352 (420)
T COG4995 279 ATHGQFS-SG-NPEDS-FLLLWDGPINVT---ELDILLRNRNNNLLPVELVVLSACQTALGEGDGRAYLGLAGGAVYAGA 352 (420)
T ss_pred ecccccc-CC-Ccccc-eeeecCCCCccc---HHHHHHHhcccCCCCeeeEEEecchhccCCCCChhhhhHHHHHHHhch
Confidence 6899988 32 11222 566666555444 33445566 678999887642 2 2222 46788999999
Q ss_pred CeEEeeCCC
Q 021899 87 KKVVISAPS 95 (306)
Q Consensus 87 kkvvIsaps 95 (306)
|.+|-|-=+
T Consensus 353 ~s~laSLW~ 361 (420)
T COG4995 353 KSALASLWS 361 (420)
T ss_pred hhhhheeee
Confidence 988877543
No 83
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.08 E-value=47 Score=26.75 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=26.4
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
..+|+++-+++.....+..+...+.|+|.+++-..
T Consensus 54 ~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 54 EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 37999999999999999999999999999988543
No 84
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.99 E-value=86 Score=28.56 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=26.9
Q ss_pred cEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 63 EYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 63 diV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
++=+...|...+.|.++.++.+||.||||...
T Consensus 76 ~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~ 107 (234)
T PRK13587 76 TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTK 107 (234)
T ss_pred CCeEEEcCCcCCHHHHHHHHHCCCCEEEECch
Confidence 34467789999999999999999999999543
No 85
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.80 E-value=1.3e+02 Score=23.36 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=31.5
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 96 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~ 96 (306)
.++|+|+-||+.....+.+..++++|. .|++.-|-+
T Consensus 61 ~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~~ 96 (120)
T PF01408_consen 61 EDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPLA 96 (120)
T ss_dssp TTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSSS
T ss_pred hcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCCc
Confidence 479999999999999999999999998 588877753
No 86
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.56 E-value=83 Score=27.67 Aligned_cols=37 Identities=27% Similarity=0.167 Sum_probs=25.9
Q ss_pred ccCCccEEEEecCCCCC------HHHHHHHHhCCCCeEEeeCC
Q 021899 58 AKTGAEYVVESTGVFTD------KDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 58 ~~~gvdiV~e~tG~~~s------~e~a~~h~~aGakkvvIsap 94 (306)
...|+|.||.+++.... .....++.++|+|++|.|.-
T Consensus 61 al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 61 ALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 34699999999996522 23456777899999987643
No 87
>PRK11579 putative oxidoreductase; Provisional
Probab=22.40 E-value=1.2e+02 Score=28.85 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=30.8
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC
Q 021899 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 96 (306)
Q Consensus 60 ~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~ 96 (306)
.++|+|+-||+.....+.+..++++|. -|++.-|-+
T Consensus 63 ~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKPla 98 (346)
T PRK11579 63 PNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKPFT 98 (346)
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCCCC
Confidence 479999999999999999999999995 477776743
No 88
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=22.39 E-value=1e+02 Score=27.79 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=40.9
Q ss_pred EEEEeccCCCCCCCccCCccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCCCC-CCC
Q 021899 44 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAP 99 (306)
Q Consensus 44 i~v~~~~~~~~~~w~~~gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsaps~-d~p 99 (306)
++|....+.+.+ -...++|+++-|.++..+.+-|....++|.|.++=-+|.. ++|
T Consensus 130 v~V~~~d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l~~p 185 (211)
T COG2344 130 VPVYDLDDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPVRLQVP 185 (211)
T ss_pred eeeechHHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccceEecCC
Confidence 666654444332 2234899999999999999999999999999887777754 455
No 89
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.71 E-value=1.3e+02 Score=29.41 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=28.4
Q ss_pred CccEE-EEecCCCCCHHHHHHHHhCCCCeEEeeCCC
Q 021899 61 GAEYV-VESTGVFTDKDKAAAHLKGGAKKVVISAPS 95 (306)
Q Consensus 61 gvdiV-~e~tG~~~s~e~a~~h~~aGakkvvIsaps 95 (306)
++++| +.+-|...+.+......+||-.|+=+|-.|
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~a 224 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDA 224 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeeccc
Confidence 66655 788899999999999999999888777554
No 90
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=21.70 E-value=97 Score=23.81 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=28.0
Q ss_pred CccEEEEecCCCCCHHHHHHHHhCCCCeEEeeCC
Q 021899 61 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94 (306)
Q Consensus 61 gvdiV~e~tG~~~s~e~a~~h~~aGakkvvIsap 94 (306)
++|+++-|.+.....+.+...+++|.|.++.-+|
T Consensus 62 ~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 62 EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3899999999988889999999999998887654
No 91
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=21.67 E-value=1.7e+02 Score=28.86 Aligned_cols=49 Identities=10% Similarity=0.248 Sum_probs=28.6
Q ss_pred CCeEEcccCccccCCCCCEEEcCChhhhhhhhhhHHHhhhcCeeEEEEe
Q 021899 98 APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 146 (306)
Q Consensus 98 ~p~vV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~t 146 (306)
.-++.+.+=.|-+.-+.+||=.+.|.-.++.|++.-+.++||.+|..+.
T Consensus 92 ~~LL~Yp~~YEG~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lv 140 (363)
T PF13433_consen 92 NALLFYPTQYEGFECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLV 140 (363)
T ss_dssp T-EEEE-S--------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEE
T ss_pred CceEEeccccccccCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEe
Confidence 3455566655555557899999999999999999999999998777654
No 92
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.33 E-value=3.3e+02 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=17.7
Q ss_pred ccEEEEecCC---CCCHHHHHHHHhCCCC
Q 021899 62 AEYVVESTGV---FTDKDKAAAHLKGGAK 87 (306)
Q Consensus 62 vdiV~e~tG~---~~s~e~a~~h~~aGak 87 (306)
+|+++..||. |.+.+......+.|+.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~ 81 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIG 81 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCe
Confidence 6777777775 6666666666667764
No 93
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=20.69 E-value=4.1e+02 Score=21.51 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=23.0
Q ss_pred CccEEEEecCC---CCCHHHHHHHHhCCCCeEEeeC
Q 021899 61 GAEYVVESTGV---FTDKDKAAAHLKGGAKKVVISA 93 (306)
Q Consensus 61 gvdiV~e~tG~---~~s~e~a~~h~~aGakkvvIsa 93 (306)
++|+++-.||. +.+.+......+.|+.--+.+.
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 67788888887 6677766677778875444443
No 94
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.45 E-value=1.2e+02 Score=27.64 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=46.0
Q ss_pred EEecCCCCCHHHHHHHHhCCCCeEEeeCCCCCCC-------------eEEcccCccccCCCCCEEEcCC-hhhhhhhhhh
Q 021899 66 VESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP-------------MFVVGVNEKEYKPELDIVSNAS-CTTNCLAPLA 131 (306)
Q Consensus 66 ~e~tG~~~s~e~a~~h~~aGakkvvIsaps~d~p-------------~vV~gVN~~~~~~~~~IVsn~s-CtT~~Lap~l 131 (306)
+...|...+.+.++.+++.||.||||.......| -+|..+... ....+..... -+..-+.-++
T Consensus 76 v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~---~~~~v~~~gw~~~~~~~~e~~ 152 (232)
T PRK13586 76 IQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYD---NTKRVLIRGWKEKSMEVIDGI 152 (232)
T ss_pred EEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcC---CCCEEEccCCeeCCCCHHHHH
Confidence 4556788999999999999999999954332222 244333321 0123333222 1111222233
Q ss_pred HHHhhhcCeeEEEEeeeec
Q 021899 132 KVIHDKFGIVEGLMTTVHS 150 (306)
Q Consensus 132 k~L~~~fgI~~~~~tT~ha 150 (306)
+-+ +.+|+.+..+|.+..
T Consensus 153 ~~l-~~~g~~~ii~tdI~~ 170 (232)
T PRK13586 153 KKV-NELELLGIIFTYISN 170 (232)
T ss_pred HHH-HhcCCCEEEEecccc
Confidence 333 667888888887753
Done!