RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021899
(306 letters)
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 620 bits (1602), Expect = 0.0
Identities = 252/293 (86%), Positives = 274/293 (93%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
YMFKYD+VHGQWKH+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVF
Sbjct: 45 YMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVF 104
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK 132
TDK+KAAAHLKGGAKKVVISAPSKDAPMFV GVNE +Y ++DIVSNASCTTNCLAPLAK
Sbjct: 105 TDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAK 164
Query: 133 VIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 192
VIHD FGI+EGLMTTVH+ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP
Sbjct: 165 VIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP 224
Query: 193 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVV 252
LNGKLTGMSFRVPTVDVSVVDLTVR+EK A+Y+ IK+AIK SEGKLKGI+GY EED+V
Sbjct: 225 DLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLV 284
Query: 253 STDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 305
STDFVGDSRSSIFDAKAGIAL+ NFVKLV+WYDNEWGYS+RVIDLI HMAKTQ
Sbjct: 285 STDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 611 bits (1579), Expect = 0.0
Identities = 198/292 (67%), Positives = 235/292 (80%), Gaps = 2/292 (0%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
YMFKYDS HG++ E+ D+ ++ K +A + R+P +PW + + ++STGVF
Sbjct: 43 YMFKYDSTHGRYAG-EVSHDDKH-IIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVF 100
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK 132
+ D A H+ GAKKVVI+APS APMFV+GVNE++Y +L IVSNASCTTNCLAPLAK
Sbjct: 101 KELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAK 160
Query: 133 VIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 192
VI+D FGI EGLMTTVHS+TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP
Sbjct: 161 VINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLP 220
Query: 193 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVV 252
L GKLTGM+FRVPTVDVSVVDLTV+L KE TY+EIK +K +EGKLKG+LGYTE+ VV
Sbjct: 221 ELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVV 280
Query: 253 STDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
S+DF+GDS SSIFDA AGI LS FVKLVSWYDNE+GYS+RV+DL+ H+AK
Sbjct: 281 SSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAKA 332
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 609 bits (1572), Expect = 0.0
Identities = 193/298 (64%), Positives = 235/298 (78%), Gaps = 4/298 (1%)
Query: 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVV 66
+ + YM KYDS HG++ ++VKD ++ G K + V R+P + W + G + V
Sbjct: 36 DADYMAYMLKYDSTHGRFDG-TVEVKDGHLIVNG-KKIRVTAERDPANLKWDEVGVDVVA 93
Query: 67 ESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTN 125
E+TG+F + A H+ GAKKVV++ PSKD PMFV G N +Y + DIVSNASCTTN
Sbjct: 94 EATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTN 152
Query: 126 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK 185
CLAPLAKVI+D FGI+EGLMTTVH+ TATQKTVDGPS KDWRGGR AS NIIPSSTGAAK
Sbjct: 153 CLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAK 212
Query: 186 AVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILG 245
AVGKVLP LNGKLTGM+FRVPT +VSVVDLTVRLEK ATYE+IK A+K +EG++KG+LG
Sbjct: 213 AVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLG 272
Query: 246 YTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
YTE+DVVSTDF G+ +S+FDAKAGIAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 273 YTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 608 bits (1569), Expect = 0.0
Identities = 188/295 (63%), Positives = 232/295 (78%), Gaps = 3/295 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
YMFKYDS HG++K ++ ++ + L+ ++V+ + P++IPW G+ YVVESTGV+
Sbjct: 48 YMFKYDSTHGRYKG-SVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVY 105
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLA 131
A+ H+ GA++VVISAPS DAPMFV+GVNE +Y P ++IVSNASCTTNCLAPLA
Sbjct: 106 LSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLA 165
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 191
KVIH++FGIVEGLMTTVHS TATQKTVDGPS K WR GR A NIIP+STGAAKAV KV+
Sbjct: 166 KVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVI 225
Query: 192 PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDV 251
P L GKLTGM+FRVPT DVSVVDLT RL + A Y IK A+K ++G + GIL YTE++V
Sbjct: 226 PELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEV 285
Query: 252 VSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 306
VSTDF+GD+ SSIFDAKAGIAL+ NFVKL+SWYDNE+GYS RV+DL+ +M A
Sbjct: 286 VSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSRDA 340
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 603 bits (1556), Expect = 0.0
Identities = 191/295 (64%), Positives = 231/295 (78%), Gaps = 6/295 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
Y+ KYDSVHG + ++V + L K V VF ++P EIPW +GA+ V ESTGVF
Sbjct: 59 YLLKYDSVHGNFNG-TVEVSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVF 116
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPL 130
T ++KA+ HLKGGAKKV+ISAP KD PM+V+GVN EY P + +++SNASCTTNCLAPL
Sbjct: 117 TTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPL 176
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVG 188
AK+I+DKFGIVEGLMTTVHS+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVG
Sbjct: 177 AKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVG 236
Query: 189 KVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTE 248
KV+PALNGKLTGM+ RVPT DVSVVDLT +L K A+ EEI A+KE S G +KGI+GYT
Sbjct: 237 KVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTS 296
Query: 249 EDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+DVVSTDF+G SSIFD A IAL+ +FVKL+SWYDNE GYS+R++DL V++A
Sbjct: 297 DDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVAS 351
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 600 bits (1550), Expect = 0.0
Identities = 192/295 (65%), Positives = 230/295 (77%), Gaps = 5/295 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
Y+ KYDSVHGQ+ E+ D LL GEK V+VF ++P +IPW K + V ESTGVF
Sbjct: 53 YLLKYDSVHGQFPC-EVTHADGF-LLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVF 110
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA 131
K+ A++HLKGGAKKV++SAP KD P++V+G+N +Y + IVSNASCTTNCLAPLA
Sbjct: 111 LTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLA 170
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGK 189
KVI+D+FGIVEGLMTTVH+ TA Q VDGPS KDWR GR A NIIP+STGAAKAVGK
Sbjct: 171 KVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGK 230
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
VLP LNGKLTG++FRVP VSVVDL RL+K A YEE+ IK+ +EG LKGILGYTE+
Sbjct: 231 VLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTED 290
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
+VVS DFV D+RSSIFD KAG+AL+ NF KLVSWYDNEWGYS+RV+DL VH+ +
Sbjct: 291 EVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITTS 345
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 596 bits (1540), Expect = 0.0
Identities = 199/291 (68%), Positives = 236/291 (81%), Gaps = 2/291 (0%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
YMF+YDS HG++ +K ++ K L+ P+ +F R+P +I W GAEYVVESTGVF
Sbjct: 45 YMFQYDSTHGKFHG-TVKAENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVF 102
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK 132
T +KA AHL+GGAK+V+ISAPS DAPMFV+GVN ++Y L I+SNASCTTNCLAPLAK
Sbjct: 103 TTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAK 162
Query: 133 VIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 192
VIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A NIIP+STGAAKAVGKV+P
Sbjct: 163 VIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIP 222
Query: 193 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVV 252
LNGKLTGM+FRVPT +VSVVDLT RLEK A Y++IK +K+ SEG LKGILGYTE VV
Sbjct: 223 ELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVV 282
Query: 253 STDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
S+DF D+ SS FDA AGIAL+ +FVKL+SWYDNE+GYS+RV+DL+ HMA
Sbjct: 283 SSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMAS 333
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 590 bits (1524), Expect = 0.0
Identities = 172/314 (54%), Positives = 222/314 (70%), Gaps = 14/314 (4%)
Query: 7 EINMQTYMFKYDSVHGQWKH-------NELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAK 59
+ Y +YD+VHG++K+ + KD+ ++ G + + V RNP ++PW K
Sbjct: 42 DAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGK 101
Query: 60 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIV 117
G EYV+ESTG+FT K A HL+GGA+KVVISAP+ A V+GVN EY P E +V
Sbjct: 102 LGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVV 161
Query: 118 SNASCTTNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNI 176
SNASCTTNCLAP+ V + + FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NI
Sbjct: 162 SNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNI 221
Query: 177 IPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 236
IPS+TGAAKAVG V+P+ GKLTGMSFRVPT DVSVVDLT ++ + +EI A+K S
Sbjct: 222 IPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRAS 281
Query: 237 EGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIAL----SKNFVKLVSWYDNEWGYSS 292
+ +KGILGYT+E++VS DF+ D+RSSI+D+KA + + F K+VSWYDNEWGYS
Sbjct: 282 KTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSH 341
Query: 293 RVIDLIVHMAKTQA 306
RV+DL+ HMA
Sbjct: 342 RVVDLVRHMASKDR 355
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 534 bits (1378), Expect = 0.0
Identities = 155/293 (52%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDSVHG+ E+ V + L+ K + V R+PE + W + G + VVESTG F
Sbjct: 42 HLLKYDSVHGRLDA-EVSV-NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRF 99
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPL 130
T ++ AA HL+ GAKKV+ISAP+K+ V+GVN+ +Y P+ ++SNASCTTNCLAP
Sbjct: 100 TKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPF 159
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
AKV+H++FGIV G+MTTVHS T Q+ +D P KD R RAA+ +IIP++TGAAKAV V
Sbjct: 160 AKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALV 218
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
LP L GKL GM+ RVPT +VSVVDL LEKE T EE+ A+K +EG+LKGIL Y+EE
Sbjct: 219 LPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEP 278
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+VS D+ G + SS DA + + + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 279 LVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 516 bits (1331), Expect = 0.0
Identities = 139/292 (47%), Positives = 188/292 (64%), Gaps = 3/292 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDS+ G + ++K + + K + V RNP +PW G + V+E TGVF
Sbjct: 44 HLLKYDSILGTFDA-DVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVF 102
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA 131
D+D A HL+ GAKKV+I+AP K P +VVGVNE+ Y I+SNASCTTNCLAP
Sbjct: 103 VDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFV 162
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 191
KV+ KFGI++G MTT HS T Q+ +D +D R RAA NI+P+STGAAKAV VL
Sbjct: 163 KVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTSTGAAKAVALVL 221
Query: 192 PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDV 251
P L GKL G++ RVPT +VSVVDL V++ K+ EE+ A +E ++ +LKGIL +E +
Sbjct: 222 PNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPL 281
Query: 252 VSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
VS DF SS D+ + + + VK+++WYDNEWGYS RV+DL +A
Sbjct: 282 VSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 333
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 508 bits (1312), Expect = 0.0
Identities = 147/293 (50%), Positives = 199/293 (67%), Gaps = 6/293 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDS++ ++ E+ D++ L K + ++P+EIPWA+ G V+ESTGVF
Sbjct: 40 HLLKYDSIYHRFPG-EVAY-DDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVF 97
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPL 130
TD DKA AHL+GGAKKV+I+AP+K V+GVN + Y P I+SNASCTTN LAP+
Sbjct: 98 TDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPV 157
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+ + FG+ + LMTTVHS T Q+ +D P KD R RAA+ NIIP++TGAAKA V
Sbjct: 158 MKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALV 216
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
LP+L G+ GM+ RVPT S+ D+T L++E T EE+ A+K +EG LKGIL YTE++
Sbjct: 217 LPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDE 276
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+V D V D SSI DAK AL N VK+ +WYDNEWGY++RV DL+ + +
Sbjct: 277 IVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELVLR 328
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 507 bits (1308), Expect = 0.0
Identities = 130/297 (43%), Positives = 188/297 (63%), Gaps = 12/297 (4%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYD++ G++ E++V D K V F + ++PW + V+E TG +
Sbjct: 45 HLLKYDTMQGRFTG-EVEVVDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFY 102
Query: 73 TDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA 131
TDKDKA AH++ GAKKV+ISAP+ D V N +E +VS ASCTTN LAP+A
Sbjct: 103 TDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVA 162
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKV 190
KV++D FG+VEGLMTT+H+ T Q T D P K D R RAA+ NIIP+STGAAKA+GKV
Sbjct: 163 KVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKV 222
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEE 249
+P ++GKL G + RVP S+ +LTV LEK+ T E++ A+K S GYTE+
Sbjct: 223 IPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASN----ESFGYTED 278
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
++VS+D VG + S+FDA +S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 279 EIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 335
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 507 bits (1309), Expect = 0.0
Identities = 138/293 (47%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYD+VHG++ ++ E LL K + + R+P+E+PW G E V+E+TG F
Sbjct: 45 HLIKYDTVHGKFDG-TVEA-FEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKF 102
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPL 130
K+KA H++ GAKKV+++AP K+ VVGVNE + ++SNASCTTNCLAP+
Sbjct: 103 NSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPV 162
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+ ++FGI GLMTTVH+ T QK +D P KD R RA +IIP++TGAAKA+ KV
Sbjct: 163 VKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKV 221
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
LP LNGKL GM+ RVPT +VS+VDL V ++++ T E I +A K + G LKGI+ ++EE
Sbjct: 222 LPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEP 281
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+VS DF ++ S+I D + + + VK+++WYDNEWGYS RV+DL+ +
Sbjct: 282 LVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVD 334
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 507 bits (1308), Expect = 0.0
Identities = 133/294 (45%), Positives = 198/294 (67%), Gaps = 6/294 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ +YDSV G++ ++ DE ++ K + + RNP +PW + + V+ESTGVF
Sbjct: 45 HLLEYDSVLGRFNA-DISY-DENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVF 102
Query: 73 TDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAP 129
+ A+ H++ GAKKV+I+AP K +V+GVN+ EY+ E ++SNASCTTNCLAP
Sbjct: 103 VTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAP 162
Query: 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 189
+AKV+HD FGI++G MTT HS T Q+ +D +D R RAA+ NI+P++TGAAKAV
Sbjct: 163 VAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVAL 221
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
V+P L GKL G++ RVPT +VSVVDL V++EK E++ +++ S+ +KGI+ Y++
Sbjct: 222 VIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDL 281
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+VS+DF G SSI D+ + + + VK+++WYDNEWGYS RV+DL A+
Sbjct: 282 PLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAAR 335
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 504 bits (1301), Expect = 0.0
Identities = 143/299 (47%), Positives = 199/299 (66%), Gaps = 11/299 (3%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDS G + +++ + ++ + + + R+P+ +PWAK G + V+ESTGVF
Sbjct: 61 HLLKYDSTFGVYNK-KVES-RDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVF 118
Query: 73 TDKDKAAA----HLK-GGAKKVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNC 126
+ H+ GAKKV+++ P+KD V+GVN+ + +L VSNASCTTNC
Sbjct: 119 SSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNC 178
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
LAPLAKV+H+ FGI +GLMTTVH+ T Q+ +D P D R RAA+ +IIP+STGAAKA
Sbjct: 179 LAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKA 237
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEK-EATYEEIKNAIKEESEG-KLKGIL 244
VG VLP L GKL G S RVP S+VDLTV+L+K + T EEI + +++ SE +LKGIL
Sbjct: 238 VGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGIL 297
Query: 245 GYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
GYTE+ +VS+D G+S SSI D + L F K++SWYDNE+GYS+RV+DL + K
Sbjct: 298 GYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 356
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 502 bits (1296), Expect = 0.0
Identities = 133/294 (45%), Positives = 198/294 (67%), Gaps = 6/294 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ +YDSV G++ ++ DE ++ K + + RNP +PW + + V+ESTGVF
Sbjct: 45 HLLEYDSVLGRFNA-DISY-DENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVF 102
Query: 73 TDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAP 129
+ A+ H++ GAKKV+I+AP K +V+GVN+ EY+ E ++SNASCTTNCLAP
Sbjct: 103 VTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAP 162
Query: 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 189
+AKV+HD FGI++G MTT HS T Q+ +D +D R RAA+ NI+P++TGAAKAV
Sbjct: 163 VAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVAL 221
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
V+P L GKL G++ RVPT +VSVVDL V++EK E++ +++ S+ +KGI+ Y++
Sbjct: 222 VIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDL 281
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+VS+DF G SSI D+ + + + VK+++WYDNEWGYS RV+DL A+
Sbjct: 282 PLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAAR 335
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 499 bits (1287), Expect = e-180
Identities = 140/301 (46%), Positives = 208/301 (69%), Gaps = 14/301 (4%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDSVHG +K ++ KD+ +++ K + VF ++P +IPW G + V+E+TGVF
Sbjct: 43 HLLKYDSVHGIFKG-SVEAKDD-SIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVF 100
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA-PMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPL 130
D++ A+ HL+GGAKKV+I+AP+K+ V+GVNE++Y P E +I+SNASCTTNCLAP
Sbjct: 101 RDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPC 160
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
KV+++ FG+ +G M TVH+ T Q+ +D P KD+R RAA+ NI+P++TGAAKA+G+V
Sbjct: 161 VKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEV 219
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGK-------LKG 242
+P L GKL G + RVP D S++DLTV + K ++ EE+ +E ++ LK
Sbjct: 220 IPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKE 279
Query: 243 ILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
IL Y E+ +VSTD VG+ S+IFDA + N V + +WYDNEWGYS R+ DL++++A
Sbjct: 280 ILQYCEDPIVSTDIVGNPHSAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLA 338
Query: 303 K 303
+
Sbjct: 339 E 339
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 497 bits (1281), Expect = e-179
Identities = 145/292 (49%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYDSVH ++ +++ E +L+ K + VF +P ++PW G ++V+ESTGVF
Sbjct: 43 HLLKYDSVHKKFPG-KVEY-TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVF 100
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA 131
+++KA HL+ GAKKV+I+AP+K V+G NE + KPE I+S ASCTTN +AP+
Sbjct: 101 RNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIV 160
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 191
KV+H+KFGIV G++TTVHS T Q+ +D P KD R RAA+ NIIP++TGAAKAV V+
Sbjct: 161 KVLHEKFGIVSGMLTTVHSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVV 219
Query: 192 PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDV 251
P + GKL GM+ RVPT D S+ DLTV +EKE T EE+ +KE +EG+LKGI+GY +E +
Sbjct: 220 PEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPI 279
Query: 252 VSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
VS+D +G + S IFDA + VK+ SWYDNE+GYS+RV+D + + K
Sbjct: 280 VSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLLK 331
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 472 bits (1217), Expect = e-169
Identities = 145/293 (49%), Positives = 199/293 (67%), Gaps = 4/293 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ +YDSVHG++ E++V T+ G P+ V RNP E+PW + + +E TG+F
Sbjct: 45 HLLRYDSVHGRFPK-EVEV-AGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIF 102
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA 131
T +DKAA HL+ GAK+V++SAP+ A V GVN + + ++SNASCTTNCLAP+A
Sbjct: 103 TSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVA 162
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 191
+V++D GI +G MTT+HS T Q T+D KD RAA+ ++IP+STGAAKAVG VL
Sbjct: 163 QVLNDTIGIEKGFMTTIHSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVL 221
Query: 192 PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDV 251
P L GKL G++ RVPT +VSVVDLT ++E T EE+ NAI+E + G+LKGILGYT+E +
Sbjct: 222 PELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKL 281
Query: 252 VSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 304
VS DF DS SS+F + V+++SWYDNEWG+SSR+ D V + K
Sbjct: 282 VSHDFNHDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALGKL 334
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 453 bits (1168), Expect = e-162
Identities = 102/293 (34%), Positives = 168/293 (57%), Gaps = 5/293 (1%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ KYD+ HG++ E++ + L G+ + V R+ + +PW + G + V++ TGV+
Sbjct: 46 HLLKYDTSHGRFAW-EVRQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVY 103
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA--PMFVVGVNEKEYKPELDIVSNASCTTNCLAPL 130
++ AH+ GAKKV+ S P + V GVN+ + + E IVSNASCTTNC+ P+
Sbjct: 104 GSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPV 163
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
K++ D +GI G +TT+HS Q+ +D D R RAAS +IIP T A + +
Sbjct: 164 IKLLDDAYGIESGTVTTIHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRF 222
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
P N + ++ RVPT++V+ +DL+V ++K E+ +++ ++G GI+ YTE
Sbjct: 223 FPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELP 282
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+VS DF D S+I D + +K + W DNEWG+++R++D + MA
Sbjct: 283 LVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 447 bits (1153), Expect = e-159
Identities = 132/293 (45%), Positives = 183/293 (62%), Gaps = 6/293 (2%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
++ +YD+ HG++ + V + ++ + V RNP ++PW + V+E TG F
Sbjct: 45 HLTRYDTAHGKFPG-TVSV-NGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFF 102
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA--PMFVVGVNEKEYKPELDIVSNASCTTNCLAPL 130
T K+KA AH+KGGAKKV+ISAP V GVN K ++SNASCTTNCLAPL
Sbjct: 103 TTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPL 162
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKV 190
K ++DK G+ +GLMTTVH+ T Q D +D R R+A+ ++IP+ TGAA AVG V
Sbjct: 163 VKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDV 221
Query: 191 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEED 250
LP L+GKL G + RVPT++VS+VDL+ ++ T EE+ +K SEG+LKGIL Y E
Sbjct: 222 LPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEP 281
Query: 251 VVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 303
+VS D+ D SS DA +S VK+ SWYDNEWG+S+R++D V +
Sbjct: 282 LVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWYDNEWGFSNRMLDTTVALMS 333
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 324 bits (833), Expect = e-111
Identities = 53/307 (17%), Positives = 104/307 (33%), Gaps = 42/307 (13%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
+ K ++ E+ LF + + V G + A+ V++ T
Sbjct: 43 ALKKGYDLYVAI--------PERVKLFEKAGIEVAGTVDD-----MLDEADIVIDCTPEG 89
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDAP--MFVVGVNEKEYKPELDIVSNASCTTNCLAPL 130
+ + G K + + F N +E + D SC T L
Sbjct: 90 IGAKNLKMYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEESYGK-DYTRVVSCNTTGLCRT 148
Query: 131 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVG-K 189
K +HD FGI + V + GP IIP+ G
Sbjct: 149 LKPLHDSFGIKKVRAVIVRRGADPAQVSKGPIN-----------AIIPNPPKLPSHHGPD 197
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE 249
V L+ + M+ VPT + ++ V +E+ T ++I + ++ + IL E+
Sbjct: 198 VKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTP----RVILISAED 253
Query: 250 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRV----------IDLIV 299
+ ST + + + ++ + + + ++ DNE Y V +D +
Sbjct: 254 GLTSTAEIMEYAKELGRSRNDLFEIPVWRESITVVDNEIYYMQAVHQESDIVPENVDAVR 313
Query: 300 HMAKTQA 306
+ + +
Sbjct: 314 AILEMEE 320
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 269 bits (689), Expect = 2e-89
Identities = 57/308 (18%), Positives = 97/308 (31%), Gaps = 33/308 (10%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
+ +V +K +E+ LF + G I A+ VV+
Sbjct: 39 FE-ARLAVEKGYKLFVAIPDNERVKLFEDA-----GIPVEGTILDIIEDADIVVDGAPKK 92
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDA---PMFVVGVNEKEYKPELDIVSNASCTTNCLAP 129
K K K ++ K F + + D V SC T L
Sbjct: 93 IGKQNLENIYKPHKVKAILQGGEKAKDVEDNFNALWSYNRCYGK-DYVRVVSCNTTGLCR 151
Query: 130 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 189
+ I+ I + + V GP A + N + + V
Sbjct: 152 ILYAINSIADIKKARIVLVRRAADPNDDKTGPV-------NAITPNPVTVPSHHGPDVVS 204
Query: 190 VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE----GKLKGILG 245
V+P GK+ + VPT + + L V ++ + + ++I AIK+ G
Sbjct: 205 VVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSS 264
Query: 246 YTEEDVVSTDFVGDSRSSIFD---AKAGIALSKNFVKLVSWYDNEWGYSSRV----IDLI 298
+ D G R I + + I + +N + L+ E S V ID I
Sbjct: 265 TAKIIEYGRDL-GRLRYDINELVVWEESINVLENEIFLMQAVHQE----SIVIPENIDCI 319
Query: 299 VHMAKTQA 306
M + +
Sbjct: 320 RAMLQMEE 327
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 256 bits (655), Expect = 2e-84
Identities = 55/310 (17%), Positives = 97/310 (31%), Gaps = 43/310 (13%)
Query: 9 NMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVES 68
+ + Y K + E + EK GF + + +V++
Sbjct: 38 DFEAYRAKELGIPVYAASEEFIPRFEKE-----------GFEVAGTLNDLLEKVDIIVDA 86
Query: 69 TGVFTDKDKAAAHLKGGAKKVVISAPSKDAP--MFVVGVNEKEYKPELDIVSNASCTTNC 126
T + K G K + D FV N + + + V SC T
Sbjct: 87 TPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGK-NYVRVVSCNTTG 145
Query: 127 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 186
L I + V +M + K RG A + +
Sbjct: 146 LVRTLSAIREYADYVYAVMIRRAADPNDTK----------RGPINAIKPTVEVPSHHGPD 195
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG----KLKG 242
V V+P + M+F VPT + V + V L+K T +++ + + + K KG
Sbjct: 196 VQTVIP---INIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKG 252
Query: 243 ILGYTEEDVVSTDFVGDSRSSIFD---AKAGIALSKNFVKLVSWYDNEWGYSSRV----I 295
+ + D +++++ K I + N + + E S V I
Sbjct: 253 FDSTAQIIEFARDL-HREWNNLYEIAVWKESINIKGNRLFYIQAVHQE----SDVIPENI 307
Query: 296 DLIVHMAKTQ 305
D I M +
Sbjct: 308 DAIRAMFELA 317
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 178 bits (452), Expect = 5e-54
Identities = 43/304 (14%), Positives = 87/304 (28%), Gaps = 29/304 (9%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF 72
Y++ + + V + F E + V G + ++ VV++T
Sbjct: 34 TSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAG-----TVEDLIKTSDIVVDTTPNG 88
Query: 73 TDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLA 131
+L+ + + + + SC T L
Sbjct: 89 VGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTI 148
Query: 132 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 191
++ + + T V ++ GP +PS AK V V+
Sbjct: 149 CTVNKVSKVEKVRATIVRRAADQKEVKKGPI-----NSLVPDPATVPSHH--AKDVNSVI 201
Query: 192 PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE----GKLKGILGYT 247
N + M+ PT + + + + L+ + ++I + ++
Sbjct: 202 R--NLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATA 259
Query: 248 EEDVVSTD--FVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRV----IDLIVHM 301
E V+ D + + I + + V L+ E S V ID I
Sbjct: 260 ELVEVARDLKRDRNDIPEVMIFSDSIYVKDDEVMLMYAVHQE----SIVVPENIDAIRAS 315
Query: 302 AKTQ 305
K
Sbjct: 316 MKLM 319
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 48.0 bits (115), Expect = 2e-06
Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 60/240 (25%)
Query: 40 GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT-----------DKDKAAAHLKGGAKK 88
G+K + +IP + + + ST + A + K
Sbjct: 43 GKKYKDAVKWIEQGDIP--EEVQDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKN 100
Query: 89 --VVISAPS-----KDAPMFVVGVN----------EKEYKPELDIVSNASCTTNCLAPLA 131
+V+S S D P+ +N ++ + +V N +CT ++
Sbjct: 101 GKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPI 160
Query: 132 KVIHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASFNIIP--------SSTG 182
K + + + ++TT+ +++ A + ++ NIIP +
Sbjct: 161 KPLIEIATKSKIIITTLQAVSGAGYNGISFMAI---------EGNIIPYIKGEEDKIAKE 211
Query: 183 AAKAVG-----KVLPALNGKLTGMSFRVPTVD---VSVVDLTVRLEKEATYEEIKNAIKE 234
K G +++PA N T S RVPT + + + EEIK +K
Sbjct: 212 LTKLNGKLENNQIIPA-NLDSTVTSIRVPTRVGHMGVI---NIVTNERINIEEIKKTLKN 267
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 42.6 bits (101), Expect = 8e-05
Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 43/198 (21%)
Query: 89 VVISAPS-----KDAPMFVVGVN----------EKEYKPELDIVSNASCTTNCLAPLAKV 133
++ S S +D P+ + VN ++ + I++N +C+T C K
Sbjct: 109 LIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKP 168
Query: 134 IHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASFNIIP--------SSTGAA 184
I DKFG+ + T+ +++ A V ++ N+IP T +
Sbjct: 169 IMDKFGLEAVFIATMQAVSGAGYNGVPSMAI---------LDNLIPFIKNEEEKMQTESL 219
Query: 185 KAVGKVLPAL----NGKLTGMSFRVPTVD---VSVVDLTVRLEKEATYEEIKNAIKEESE 237
K +G + N K++ RV +D S+ V+ ++ A EEIK + +
Sbjct: 220 KLLGTLKDGKVELANFKISASCNRVAVIDGHTESI---FVKTKEGAEPEEIKEVMDKFDP 276
Query: 238 GKLKGILGYTEEDVVSTD 255
K + Y + V+ +
Sbjct: 277 LKDLNLPTYAKPIVIREE 294
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 38.1 bits (89), Expect = 0.003
Identities = 46/245 (18%), Positives = 79/245 (32%), Gaps = 67/245 (27%)
Query: 47 FGFRNPEEIPWAKTGAEYVVESTG----------VFT--DKDKAAAHLKGGAKK--VVIS 92
+ +T + VV+ VF+ D D A K + V+S
Sbjct: 63 DAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEAGLAVVS 122
Query: 93 APS-----KDAPMFVVGVN---------------EKEYKPELDIVSNASCTTNCLAPLAK 132
KD P+ V VN K K I+ ++C+T L K
Sbjct: 123 NAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLK 182
Query: 133 VIHDKFGIVEGL-MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIP------------- 178
+ +KFG ++ L TT+ +I+ + M NI+P
Sbjct: 183 PLVEKFGPIDALTTTTLQAISGAGFSPGVSGM-------DILDNIVPYISGEEDKLEWET 235
Query: 179 ----SSTGAAKAVGKVLPALNGKLTGMSFRVPTVD---VSVVDLTVRLEKE--ATYEEIK 229
A +P K++ RVP +D + ++R + E++K
Sbjct: 236 KKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECI---SLRFANRPAPSVEDVK 292
Query: 230 NAIKE 234
++E
Sbjct: 293 QCLRE 297
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 32.5 bits (75), Expect = 0.14
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 13/71 (18%)
Query: 77 KAAAHLKGGAKKVVI---SAPSKD-APMFVVGVNE---KEYKPELDIVSNASCTTNCLAP 129
+A A G VI A AP +V VN ++S+ L
Sbjct: 87 RARAA---GC--SVIDLSGALEPSVAPPVMVSVNAERLASQAAP-FLLSSPCAVAAELCE 140
Query: 130 LAKVIHDKFGI 140
+ +
Sbjct: 141 VLAPLLATLDC 151
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 32.2 bits (74), Expect = 0.20
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 77 KAAAHLKGGAKKVVISAPS-----KDAPMFVVGVNEKEYKPELD----IVSNASCTTNCL 127
G K I A S K+A + + VN K+ + +CT + +
Sbjct: 83 ALRQA---GWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCTVSLM 139
Query: 128 APLAKVIHDKFGI 140
++++ +
Sbjct: 140 LMALGGLYERGLV 152
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 31.8 bits (73), Expect = 0.26
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 77 KAAAHLKGGAKKVVISAPS-----KDAPMFVVGVNEKEYKPELD----IVSNASCTTNCL 127
K G + I A S DA + + VN+ L+ +CT + +
Sbjct: 84 KLRES---GWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLM 140
Query: 128 APLAKVIHDKFGI 140
+ +
Sbjct: 141 LMSLGGLFANDLV 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.38
Identities = 44/340 (12%), Positives = 98/340 (28%), Gaps = 77/340 (22%)
Query: 21 HGQWKHNELKVKDEKTL-LFGEKPVAVFGFRNPEEIP---WAKTGAEYVVESTGVFTDKD 76
H ++ E + + + L +F + V F ++ +++P +K ++++ S D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK----DAV 61
Query: 77 KAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYK------------PELDIVSNASC-- 122
L ++S + FV V YK P +
Sbjct: 62 SGTLRLFW----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 123 -TTNCLAPLAK--V--IHDKFGIVEGLMT-------TVHSITATQKTV-DGPSMKDWRGG 169
N AK V + + + L+ + + + KT ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 170 RAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVD--LTVRLEKEATYEE 227
F I + + VL L + +++ S D ++L + E
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 228 IKNAIKEESEGK--LKGILGYTEEDVVSTD----FVGDSR-------SSIFDAKAGIALS 274
++ +K + L +L +V + F + + D LS
Sbjct: 234 LRRLLKSKPYENCLL--VL----LNVQNAKAWNAFNLSCKILLTTRFKQVTD-----FLS 282
Query: 275 KNFVKLVSWYDNEWGYS--------SRVIDLIVHMAKTQA 306
+S + + + +D +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 31.4 bits (72), Expect = 0.39
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 77 KAAAHLKGGAKKVVISAPS-----KDAPMFVVGVNEKEYKPELD----IVSNASCTTNCL 127
K A G I A S DA + + VN K L +CT + +
Sbjct: 87 KLRAA---GWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNFIGGNCTVSLM 143
Query: 128 APLAKVIHDKFGI 140
+ + +
Sbjct: 144 LMALGGLFRENLV 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.66
Identities = 39/219 (17%), Positives = 64/219 (29%), Gaps = 64/219 (29%)
Query: 116 IVSNASCTTNCLAP-----LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGR 170
+S+ S L P +A + ++F + T D P+
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQF------NKILPEPTEGFAADDEPTTP---AEL 60
Query: 171 AASF------NIIPSSTGAAKAVGK-VLPA-----LNGKLTGMSFRVPTVDVSVVDLTVR 218
F + PS G V L L G D+ + +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-----------DIHALAAKLL 109
Query: 219 LEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTD-FVGDSRSSIFDA----KAGIAL 273
E + T + K IK Y +++ F S S++F A A +
Sbjct: 110 QENDTTLVKTKELIKN-----------YITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 274 -------SKNFVK-LVSWYDNEWGYSSRVIDLIVHMAKT 304
+ ++ + L Y Y V DLI A+T
Sbjct: 159 IFGGQGNTDDYFEELRDLYQT---YHVLVGDLIKFSAET 194
Score = 30.8 bits (69), Expect = 0.69
Identities = 37/229 (16%), Positives = 64/229 (27%), Gaps = 85/229 (37%)
Query: 82 LKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK---VIHDKF 138
L GAK +V+S P + + + + + LD P ++ ++F
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD---------QSRIPFSERKLKFSNRF 420
Query: 139 GIVEGLMTTV--HS---ITATQKTVDGPSMKD--WRGGRAASFNIIP---SSTGA--AKA 186
L HS + A+ + + IP + G+
Sbjct: 421 -----LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ----IPVYDTFDGSDLRVL 471
Query: 187 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 246
G + ++ R+P V + +AT+ IL
Sbjct: 472 SGSISE----RIVDCIIRLP------VKWETTTQFKATH-----------------IL-- 502
Query: 247 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVI 295
DF G +S G+ L N+ G RVI
Sbjct: 503 --------DF-GPGGAS------GLG------VLTH--RNKDGTGVRVI 528
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 30.5 bits (70), Expect = 0.69
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 35 KTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94
L F + + V E +P + V+ S G + KA +GGA +V+
Sbjct: 41 VRLAFRGEEIPV------EPLPEGPLPVDLVLASAGGGISRAKALVWAEGGA--LVVDNS 92
Query: 95 S-----KDAPMFVVGVNEKEYKPELDIVSNASCTT-NCLAPLAKVIHDKFGI 140
S P+ V VN ++ I++N +CTT L +H F
Sbjct: 93 SAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCTTAILAMAL-WPLHRAFQA 143
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain
ATU1203, ontario centre for ST proteomics, structural
genomics; NMR {Agrobacterium tumefaciens str}
Length = 85
Score = 26.7 bits (59), Expect = 3.1
Identities = 10/66 (15%), Positives = 14/66 (21%), Gaps = 17/66 (25%)
Query: 184 AKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGI 243
A + + V TV + + I I
Sbjct: 37 AGVIKGAIEKTVP--------GAAVHADPASRTVVVGGVSDAAHIAEIITAA-------- 80
Query: 244 LGYTEE 249
GYT E
Sbjct: 81 -GYTPE 85
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis,
chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB:
2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Length = 64
Score = 25.8 bits (57), Expect = 4.2
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 184 AKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE 235
A+AV K + + TV V + V + E+++ AI
Sbjct: 16 AEAVTKAVQNEDA--------QATVQVDLTSKKVTITSALGEEQLRTAIASA 59
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 27.9 bits (63), Expect = 4.5
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 36/108 (33%)
Query: 61 GAEYVVE--STGVFTDKD----------------KAAAHLKGGAKKVVI---SA----PS 95
G E VE T + D + AA G VI SA P
Sbjct: 48 GQEIEVEDAETADPSGLDIALFSAGSAMSKVQAPRFAAA---GV--TVIDNSSAWRKDP- 101
Query: 96 KDAPMFVVGVNE---KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 140
D P+ V VN +P+ I++N +CTT P+ KV+HD+ +
Sbjct: 102 -DVPLVVSEVNFERDAHRRPK-GIIANPNCTTMAAMPVLKVLHDEARL 147
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 27.9 bits (63), Expect = 4.8
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 28/103 (27%)
Query: 61 GAEYVVE--STGVFTDKD----------------KAAAHLKGGAKKVVISAPS-----KD 97
+ +E + F D A G VV+ S D
Sbjct: 49 DQDITIEETTETAFEGVDIALFSAGSSTSAKYAPYAVKA---GV--VVVDNTSYFRQNPD 103
Query: 98 APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 140
P+ V VN I++ +C+T + + + K+G+
Sbjct: 104 VPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGL 146
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Length = 262
Score = 27.6 bits (62), Expect = 4.8
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 40 GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD 74
G + + GF + + + + TD
Sbjct: 136 GCQMTILLGFASENVKILENEFSNLKNVTLKIATD 170
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 104
Score = 26.5 bits (58), Expect = 5.1
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 203 FRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVV 252
V + S V +V+ + + +EI + E+ + Y EED+
Sbjct: 12 CHVYITEHSYV--SVKAKVSSIAQEILKVVAEK--------IQYAEEDLA 51
>1yg0_A COP associated protein; open-faced beta-sandwich, missing
C-terminal beta-sheet, Met transport; NMR {Helicobacter
pylori}
Length = 66
Score = 25.7 bits (57), Expect = 5.7
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 184 AKAVGKVLPALNGKLTGMSFRVPTVDVSVVD--LTVRLEKEATYEEIKNAIKE 234
+ K + + G V +DVSV + V + AT + IK A+ +
Sbjct: 16 VDKIEKFVGEIEG--------VSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 27.4 bits (62), Expect = 6.3
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 35 KTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 94
KT F K V V +N EE W + + S G A + G VVI
Sbjct: 44 KTYRFNGKTVRV---QNVEEFDW--SQVHIALFSAGGELSAKWAPIAAEAGV--VVIDNT 96
Query: 95 S-----KDAPMFVVGVNE---KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 140
S D P+ V VN E++ +I++N +C+T + K I+D GI
Sbjct: 97 SHFRYDYDIPLVVPEVNPEAIAEFRNR-NIIANPNCSTIQMLVALKPIYDAVGI 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0830 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,710,247
Number of extensions: 289135
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 55
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)