RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021899
(306 letters)
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 275 bits (704), Expect = 1e-94
Identities = 126/164 (76%), Positives = 140/164 (85%)
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 181
CTTNCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A NIIP+ST
Sbjct: 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60
Query: 182 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241
GAAKAVGKV+P LNGKLTGM+FRVPT +VSVVDLT RLEK A Y++IK +K+ SEG LK
Sbjct: 61 GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK 120
Query: 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 285
GILGYTE VVS+DF D+ SS FDA AGIAL+ +FVKL+SWYD
Sbjct: 121 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 266 bits (681), Expect = 3e-91
Identities = 96/164 (58%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 181
CTTNCLAP AKV+H++FGIV G+MTTVHS T Q+ +D P KD R RAA+ +IIP++T
Sbjct: 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLP-HKDLRRARAAAESIIPTTT 59
Query: 182 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241
GAAKAV VLP L GKL GM+ RVPT +VSVVDL LEKE T EE+ A+K +EG+LK
Sbjct: 60 GAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELK 119
Query: 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 285
GIL Y+EE +VS D+ G + SS DA + + + VK+VSWYD
Sbjct: 120 GILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 262 bits (672), Expect = 7e-90
Identities = 81/164 (49%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 181
CTTNCLAP KV+ KFGI++G MTT HS T Q+ +D +D R RAA NI+P+ST
Sbjct: 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTST 59
Query: 182 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241
GAAKAV VLP L GKL G++ RVPT +VSVVDL V++ K+ EE+ A +E ++ +LK
Sbjct: 60 GAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 119
Query: 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 285
GIL +E +VS DF SS D+ + + + VK+++WYD
Sbjct: 120 GILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 244 bits (625), Expect = 1e-82
Identities = 82/164 (50%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Query: 121 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 180
SCTTNCLAPL K ++DK G+ +GLMTTVH+ T Q D +D R R+A+ ++IP+
Sbjct: 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTK 59
Query: 181 TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 240
TGAA AVG VLP L+GKL G + RVPT++VS+VDL+ ++ T EE+ +K SEG+L
Sbjct: 60 TGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGEL 119
Query: 241 KGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY 284
KGIL Y E +VS D+ D SS DA +S VK+ SWY
Sbjct: 120 KGILDYNTEPLVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWY 162
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 238 bits (608), Expect = 3e-80
Identities = 87/164 (53%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 181
CTTN LAP+ KV+ + FG+ + LMTTVHS T Q+ +D P KD R RAA+ NIIP++T
Sbjct: 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTT 59
Query: 182 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 241
GAAKA VLP+L G+ GM+ RVPT S+ D+T L++E T EE+ A+K +EG LK
Sbjct: 60 GAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLK 119
Query: 242 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 285
GIL YTE+++V D V D SSI DAK AL N VK+ +WYD
Sbjct: 120 GILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYD 162
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 228 bits (583), Expect = 3e-76
Identities = 104/169 (61%), Positives = 131/169 (77%), Gaps = 5/169 (2%)
Query: 121 SCTTNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS 179
SCTTNCLAP+ V + + FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS
Sbjct: 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60
Query: 180 STGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 239
+TGAAKAVG V+P+ GKLTGMSFRVPT DVSVVDLT ++ + +EI A+K S+
Sbjct: 61 TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTY 120
Query: 240 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIAL----SKNFVKLVSWY 284
+KGILGYT+E++VS DF+ D+RSSI+D+KA + + F K+VSWY
Sbjct: 121 MKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWY 169
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 150 bits (380), Expect = 1e-45
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+ YMFKYDS HG +K E+K ++ L+ K + VF PE IPW+K GAEY+VE
Sbjct: 36 LEYMVYMFKYDSTHGMFKG-EVKA-EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVE 93
Query: 68 STGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
STGVFT +KA+AH KGGAKKV+ISAPS DAPMFV GVN ++Y ++ +VSNAS
Sbjct: 94 STGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYS 153
Query: 128 APLAKVIHDKFGI 140
+ +I +
Sbjct: 154 QRVIDLIKHMQKV 166
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 148 bits (376), Expect = 4e-45
Identities = 61/127 (48%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Query: 8 INMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVE 67
+N YMF+YDS HG++ +K + L+ P+ +F R+P +I W GAEYVVE
Sbjct: 38 LNYMVYMFQYDSTHGKFHG-TVKA-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVE 95
Query: 68 STGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCL 127
STGVFT +KA AHL+GGAK+V+ISAPS DAPMFV+GVN ++Y L I+SNAS
Sbjct: 96 STGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYS 155
Query: 128 APLAKVI 134
+ ++
Sbjct: 156 NRVVDLM 162
Score = 28.3 bits (63), Expect = 0.68
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 275 KNFVKLVSWYDNEWGYSSRVIDLIVHMA 302
N +K++S NE+GYS+RV+DL+ HMA
Sbjct: 139 DNSLKIISNASNEFGYSNRVVDLMAHMA 166
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 144 bits (364), Expect = 2e-43
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
+ +++ KYDS+ G + + K + + K + V RNP +PW G + V
Sbjct: 36 GGVKQASHLLKYDSILGTFDADV-KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLV 94
Query: 66 VESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCT- 123
+E TGVF D+D A HL+ GAKKV+I+AP K D P +VVGVNE+ Y I+SNAS
Sbjct: 95 IEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEW 154
Query: 124 --TNCLAPLAKVIHDKF 138
+ + LA ++ +K+
Sbjct: 155 GYSQRVVDLADIVANKW 171
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 136 bits (345), Expect = 2e-40
Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Query: 13 YMFKYDSVHGQWKHNELKVK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV 71
++ KYDSVH ++ KV+ E +L+ K + VF +P ++PW G ++V+ESTGV
Sbjct: 43 HLLKYDSVHKKFPG---KVEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGV 99
Query: 72 FTDKDKAAAHLKGGAKKVVISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPL 130
F +++KA HL+ GAKKV+I+AP+K + V+G NE + KPE I+S AS +
Sbjct: 100 FRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRV 159
Query: 131 AKVIHDKFGI 140
+ +
Sbjct: 160 VDTLELLLKM 169
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 134 bits (339), Expect = 1e-39
Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 121 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 180
SC T L K +HD FGI + V + + IIP+
Sbjct: 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA-----------DPAQVSKGPINAIIPNP 49
Query: 181 TGAAKAVGK-VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 239
G V L+ + M+ VPT + ++ V +E+ T ++I + ++
Sbjct: 50 PKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVI 109
Query: 240 LKGI---LGYTEEDVVSTDFVGDSRSSIFD 266
L L T E + +G SR+ +F+
Sbjct: 110 LISAEDGLTSTAEIMEYAKELGRSRNDLFE 139
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 133 bits (336), Expect = 4e-39
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Query: 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
+ + YM KYDS HG++ ++VKD L+ K + V R+P + W + G + V
Sbjct: 35 LDADYMAYMLKYDSTHGRFDG-TVEVKDGH-LIVNGKKIRVTAERDPANLKWDEVGVDVV 92
Query: 66 VESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTT 124
E+TG+F + A H+ GAKKVV++ PSKD PMFV G N +Y + DIVSNAS T
Sbjct: 93 AEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQ-DIVSNASNET 151
Query: 125 NCLAPLAKVIH 135
+ +I
Sbjct: 152 GYSNKVLDLIA 162
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 131 bits (330), Expect = 2e-38
Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 181
C T L ++ + + T V + + + G S P++
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK---------EVKKGPINSLVPDPATV 51
Query: 182 GAA--KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 239
+ K V V+ L + M+ PT + + + + L+ + ++I + ++
Sbjct: 52 PSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIV 109
Query: 240 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFV--KLVSWYDNEWGYSSRV 294
L E + D + D + + + + D+E V
Sbjct: 110 LISSKYDAEATAELVEVARDLKRDRND------IPEVMIFSDSIYVKDDEVMLMYAV 160
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 128 bits (323), Expect = 4e-37
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVV 66
+ N ++ KYDSVHG+ + L+ K + V R+PE + W + G + VV
Sbjct: 36 DANTLAHLLKYDSVHGRLDAE--VSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVV 93
Query: 67 ESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAPMFVVGVNEKEYKPELD-IVSNASCTT 124
ESTG FT ++ AA HL+ GAKKV+ISAP+ + V+GVN+ +Y P+ ++SNAS T
Sbjct: 94 ESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASNET 153
Query: 125 NCLAPLAKVIHDKFGIVEGL 144
+ + + +GL
Sbjct: 154 GYSHRVVDLAA--YIASKGL 171
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 124 bits (313), Expect = 1e-35
Identities = 53/137 (38%), Positives = 75/137 (54%), Gaps = 9/137 (6%)
Query: 13 YMFKYDSVHGQWKHNELKVKDEKT-------LLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
Y +YD+VHG++K+ K + ++ G + + V RNP ++PW K G EYV
Sbjct: 48 YQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYV 107
Query: 66 VESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCT 123
+ESTG+FT K A HL+GGA+KVVISAP+ A V+GVN EY P E +VSNA
Sbjct: 108 IESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNE 167
Query: 124 TNCLAPLAKVIHDKFGI 140
+ ++
Sbjct: 168 WGYSHRVVDLVRHMASK 184
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 122 bits (306), Expect = 1e-34
Identities = 58/135 (42%), Positives = 81/135 (60%), Gaps = 6/135 (4%)
Query: 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVV 66
++N Y+ KYDSVHGQ+ + LL GEK V+VF ++P +IPW K + V
Sbjct: 36 DLNHLCYLLKYDSVHGQFPCE--VTHADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVC 93
Query: 67 ESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAPMFVVGVNEKEYKPELDIVSNASCTTN 125
ESTGVF K+ A++HLKGGAKKV++SAP D P++V+G+N +Y + IVSNAS
Sbjct: 94 ESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASN--- 150
Query: 126 CLAPLAKVIHDKFGI 140
+V+ I
Sbjct: 151 EWGYSNRVLDLAVHI 165
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 121 bits (305), Expect = 2e-34
Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 9/139 (6%)
Query: 17 YDSVHGQWKHNELKV-KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDK 75
+++ K +L V E+ LF + + V G + A+ V++ T
Sbjct: 38 FEARMALKKGYDLYVAIPERVKLFEKAGIEVAG-----TVDDMLDEADIVIDCTPEGIGA 92
Query: 76 DKAAAHLKGGAKKVVISAPSKDAP--MFVVGVNEKEY-KPELDIVSNASCTTNCLAPLAK 132
+ + G K + + F N +E + V + + + +
Sbjct: 93 KNLKMYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILE 152
Query: 133 VIHDKFGIVEGLMTTVHSI 151
+ DK+ + ++ +
Sbjct: 153 MEEDKYKSINKTNKAMNIL 171
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 110 bits (276), Expect = 2e-30
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 6 FEINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYV 65
+ ++ KYDS++ ++ D++ L K + ++P+EIPWA+ G V
Sbjct: 33 TDNKTLAHLLKYDSIYHRFPGE--VAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVV 90
Query: 66 VESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCT 123
+ESTGVFTD DKA AHL+GGAKKV+I+AP+K + V+GVN + Y P I+SNAS
Sbjct: 91 IESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASNE 150
Query: 124 ---TNCLAPLAKVIHDK 137
N +A L +++ K
Sbjct: 151 WGYANRVADLVELVLRK 167
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 107 bits (268), Expect = 5e-29
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 7 EINMQTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVV 66
+ ++ +YD+ HG++ + V ++ G+K + V RNP ++PW + V+
Sbjct: 39 DPKTNAHLTRYDTAHGKFPGT-VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVL 96
Query: 67 ESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTT 124
E TG FT K+KA AH+KGGAKKV+ISAP V GVN K ++SNA
Sbjct: 97 ECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--- 153
Query: 125 NCLAPLAKVIHDKFGIVEGLMTTVHSITA 153
+++G ++ T ++ +
Sbjct: 154 -----------NEWGFSNRMLDTTVALMS 171
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 107 bits (268), Expect = 5e-29
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 3/102 (2%)
Query: 48 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDA--PMFVVGV 105
GF + + +V++T + K G K + D FV
Sbjct: 66 GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQA 125
Query: 106 NEKEY-KPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 146
N + V + + + ++ I + +
Sbjct: 126 NYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 93.5 bits (232), Expect = 7e-24
Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 23/138 (16%)
Query: 25 KHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 84
+ + V + F E + V + ++ VV++T +L+
Sbjct: 46 RGIRIYVPQQSIKKFEESGIPV-----AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQL 100
Query: 85 GAKKVVISAPSKDA---PMFVVGVNEKEY--KPELDIVSNASCTTNCLAPL--------- 130
+ + K F N E K + +VS + + +
Sbjct: 101 Q-RNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSA 159
Query: 131 ---AKVIHDKFGIVEGLM 145
++ ++ GI++G +
Sbjct: 160 EDSMRITNESLGILKGYL 177
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 47.9 bits (114), Expect = 2e-07
Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 121 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 180
SC T L I + V ++ D R I P+
Sbjct: 1 SCNTTGLVRTLSAIREYADYVY--------AVMIRRAAD-----PNDTKRGPINAIKPTV 47
Query: 181 TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 240
+ V + + M+F VPT + V + V L+K T +++ + + + L
Sbjct: 48 EVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLL 107
Query: 241 KGI---LGYTEEDVVSTDFVGDSRSSIFD 266
T + + + +++++
Sbjct: 108 FEKEKGFDSTAQIIEFARDLHREWNNLYE 136
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 29.8 bits (66), Expect = 0.29
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 154
C+T + + + K+G+ +++T +++
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGA 33
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 29.7 bits (66), Expect = 0.36
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 154
CT + + ++++ + T + +
Sbjct: 2 CTVSLMLMALGGLYERGLVEWMSAMTYQAASGA 34
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 28.7 bits (63), Expect = 0.72
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 101 FVVGVNE--KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVE 142
V G+ E +E +V N + ++ FG+ E
Sbjct: 122 RVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDE 165
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 28.6 bits (63), Expect = 0.85
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 122 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 154
CT + + + + + T + +
Sbjct: 2 CTVSLMLMSLGGLFANDLVDWVSVATYQAASGG 34
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 26.7 bits (59), Expect = 1.4
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 199 TGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE 235
+G++ V + + DL + ++ + +K +
Sbjct: 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRV 42
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 26.9 bits (58), Expect = 2.7
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 116 IVSNASCTTNCLAPLAKVIHDKFGIVE 142
+++ A + + +FG E
Sbjct: 148 LIAVPGLLKGAAAQAVQCANIRFGFAE 174
>d2hgsa1 c.30.1.4 (A:202-303) Eukaryotic glutathione synthetase,
substrate-binding domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 25.4 bits (56), Expect = 4.0
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 26 HNELKVKDEKTLLFGEKPVAVFGFR 50
+ + ++ L + +AV FR
Sbjct: 42 SEKGSLDQDRRLFVDGQEIAVVYFR 66
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5,
RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.1 bits (55), Expect = 4.8
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 203 FRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVV 252
V + S V +V+ + + +EI + E+ + Y EED+
Sbjct: 12 CHVYITEHSYV--SVKAKVSSIAQEILKVVAEK--------IQYAEEDLA 51
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 25.5 bits (55), Expect = 8.4
Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 12 TYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV-FGFRNPEEIPWAKTGAEYVV 66
++ S +VK + + G + E+ A+ ++
Sbjct: 162 PIIYIEYSGTYGNPELVAEVKKVLD----KARLFYGGGIDSREKAREMLRYADTII 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,128,471
Number of extensions: 51105
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 40
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)