Query 021901
Match_columns 306
No_of_seqs 220 out of 1231
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 2E-78 4.2E-83 569.9 23.7 296 1-306 2-301 (301)
2 PLN03014 carbonic anhydrase 100.0 2.4E-66 5.2E-71 494.1 25.3 256 40-304 83-341 (347)
3 PLN03019 carbonic anhydrase 100.0 7.7E-64 1.7E-68 474.7 23.3 246 40-290 78-326 (330)
4 PLN00416 carbonate dehydratase 100.0 1.2E-59 2.5E-64 436.9 24.3 244 40-290 6-253 (258)
5 PLN02154 carbonic anhydrase 100.0 2.6E-58 5.6E-63 431.3 24.3 218 85-306 71-290 (290)
6 cd00884 beta_CA_cladeB Carboni 100.0 5.9E-53 1.3E-57 376.8 20.0 187 96-282 1-190 (190)
7 PRK10437 carbonic anhydrase; P 100.0 1.6E-52 3.5E-57 381.2 22.5 194 89-288 3-197 (220)
8 cd00883 beta_CA_cladeA Carboni 100.0 2.2E-52 4.8E-57 370.6 19.7 180 97-282 1-182 (182)
9 PRK15219 carbonic anhydrase; P 100.0 2.3E-50 5E-55 372.4 21.5 188 85-282 52-244 (245)
10 COG0288 CynT Carbonic anhydras 100.0 1.5E-50 3.3E-55 365.5 19.2 197 88-288 2-201 (207)
11 KOG1578 Predicted carbonic anh 100.0 2.6E-48 5.7E-53 357.8 13.3 239 46-306 36-276 (276)
12 cd03378 beta_CA_cladeC Carboni 100.0 9.7E-46 2.1E-50 320.4 17.3 148 87-281 2-153 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 1.7E-43 3.8E-48 303.1 16.3 152 123-279 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 1.4E-41 3.1E-46 282.6 15.1 119 119-282 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 2.6E-38 5.6E-43 270.2 11.8 141 119-281 1-141 (142)
16 KOG1578 Predicted carbonic anh 98.2 5.4E-08 1.2E-12 91.0 -4.7 185 93-280 3-247 (276)
17 COG1254 AcyP Acylphosphatases 49.6 14 0.0003 29.7 2.3 24 264-287 29-52 (92)
18 PF10070 DUF2309: Uncharacteri 48.4 27 0.00058 38.2 4.9 39 248-286 539-583 (788)
19 PF04019 DUF359: Protein of un 47.4 1.1E+02 0.0025 25.6 7.6 80 115-201 6-85 (121)
20 TIGR02742 TrbC_Ftype type-F co 43.5 46 0.001 28.3 4.7 54 107-178 59-112 (130)
21 PF05952 ComX: Bacillus compet 42.5 29 0.00063 25.6 2.9 25 246-270 5-29 (57)
22 PRK11440 putative hydrolase; P 40.7 55 0.0012 28.5 5.0 47 139-194 90-136 (188)
23 PF07859 Abhydrolase_3: alpha/ 35.1 32 0.0007 29.7 2.6 53 125-197 31-88 (211)
24 PF00857 Isochorismatase: Isoc 31.6 1.3E+02 0.0029 25.2 5.8 44 144-196 86-129 (174)
25 PF00009 GTP_EFTU: Elongation 28.9 30 0.00064 29.9 1.3 14 179-192 3-16 (188)
26 PRK14432 acylphosphatase; Prov 27.4 74 0.0016 25.3 3.2 21 264-284 27-47 (93)
27 cd01891 TypA_BipA TypA (tyrosi 27.3 37 0.00079 29.4 1.6 14 179-192 2-15 (194)
28 PF00355 Rieske: Rieske [2Fe-2 27.3 21 0.00047 27.4 0.1 17 265-281 64-80 (97)
29 PRK00075 cbiD cobalt-precorrin 26.7 4.7E+02 0.01 26.1 9.3 32 145-189 225-256 (361)
30 cd01015 CSHase N-carbamoylsarc 26.0 1.4E+02 0.003 25.8 5.0 40 140-188 84-123 (179)
31 TIGR00312 cbiD cobalamin biosy 25.4 4.5E+02 0.0097 26.1 8.9 22 167-189 222-243 (347)
32 PRK14445 acylphosphatase; Prov 24.7 1.1E+02 0.0023 24.1 3.6 21 264-284 29-49 (91)
33 cd01013 isochorismatase Isocho 24.7 1.4E+02 0.0031 26.4 5.0 42 141-191 113-154 (203)
34 PRK14423 acylphosphatase; Prov 24.6 1.1E+02 0.0023 24.2 3.6 22 264-285 30-51 (92)
35 PRK14440 acylphosphatase; Prov 23.7 97 0.0021 24.4 3.2 23 264-286 28-50 (90)
36 PF12697 Abhydrolase_6: Alpha/ 23.0 94 0.002 25.6 3.3 31 166-196 52-82 (228)
37 TIGR01250 pro_imino_pep_2 prol 22.9 97 0.0021 26.9 3.5 31 167-197 83-113 (288)
38 PRK14429 acylphosphatase; Prov 22.4 1.2E+02 0.0026 23.8 3.5 23 264-286 27-49 (90)
39 COG1116 TauB ABC-type nitrate/ 22.3 49 0.0011 31.3 1.5 14 179-192 29-42 (248)
40 PRK03592 haloalkane dehalogena 22.2 93 0.002 28.4 3.3 32 167-198 80-111 (295)
41 cd04160 Arfrp1 Arfrp1 subfamil 22.2 44 0.00096 27.5 1.1 12 181-192 1-12 (167)
42 PRK11181 23S rRNA (guanosine-2 22.1 3.5E+02 0.0077 24.9 7.2 76 107-191 53-133 (244)
43 cd01890 LepA LepA subfamily. 21.9 46 0.001 27.8 1.2 13 180-192 1-13 (179)
44 PRK01160 hypothetical protein; 21.9 3.9E+02 0.0086 24.0 7.1 81 114-201 54-138 (178)
45 PF13580 SIS_2: SIS domain; PD 21.4 1.2E+02 0.0026 25.2 3.6 39 139-186 99-138 (138)
46 cd03528 Rieske_RO_ferredoxin R 21.3 36 0.00078 26.2 0.3 16 265-280 60-75 (98)
47 TIGR00040 yfcE phosphoesterase 21.2 3E+02 0.0064 23.0 6.0 64 120-191 52-118 (158)
48 PRK14448 acylphosphatase; Prov 20.8 1.2E+02 0.0026 23.9 3.2 22 264-285 27-48 (90)
49 cd03478 Rieske_AIFL_N AIFL (ap 20.7 33 0.00071 26.5 -0.0 16 265-280 59-74 (95)
50 PLN02824 hydrolase, alpha/beta 20.5 1E+02 0.0022 28.1 3.3 31 167-197 89-119 (294)
51 PRK14441 acylphosphatase; Prov 20.4 1.5E+02 0.0033 23.4 3.8 22 264-285 30-51 (93)
52 PF01888 CbiD: CbiD; InterPro 20.3 76 0.0016 30.2 2.3 32 144-188 221-252 (261)
53 PRK14451 acylphosphatase; Prov 20.3 1.2E+02 0.0027 23.7 3.2 22 264-285 28-49 (89)
54 COG3002 Uncharacterized protei 20.1 92 0.002 33.6 3.0 16 173-188 551-571 (880)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=2e-78 Score=569.87 Aligned_cols=296 Identities=59% Similarity=0.993 Sum_probs=261.5
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCcccccCCCcccccchhhHHHHHHHhhhcC-CcccccccCchhhhhhhcccchhh
Q 021901 1 MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSS-GFKLKGWRHSEGITQEFQVDKLET 79 (306)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~t~~l~~~~~~~ 79 (306)
+|+|+++|||+|||+|+|+. +.+.....+|..+ ...|+++|-..+|++. +|+.+|++|+++||+||+....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 74 (301)
T PLN03006 2 AATPTHFSVSHDPFSSTSLL--NLQTQAIFGPNHS----LKTTQLRIPASFRRKATNLQVMASGKTPGLTQEANGVAID- 74 (301)
T ss_pred CCCCCCcccccCCcchhhhh--ccCcceeecCCcc----cceeEecccccccccccchhhhhhhchHHHHHHHhhccCC-
Confidence 47899999999999999996 2233344444444 6678899999888754 88999999999999999865432
Q ss_pred HHhhhcHHhHHHHHHHHHHHhhhhhhccChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCC
Q 021901 80 AAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC 159 (306)
Q Consensus 80 ~~~~~~~~~~l~~l~~rf~~f~~~~~~~~~~~~~~La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~ 159 (306)
..++++++++|++||++|+..++.+++++|++|++||+|+++||+||||||+|+.|||++|||+|||||+||+|+|+
T Consensus 75 ---~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~ 151 (301)
T PLN03006 75 ---RQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPY 151 (301)
T ss_pred ---CCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCc
Confidence 13468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCceEEEeccCcchHHHHhhhcCCCCC-hhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHH
Q 021901 160 ESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEED-PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHC 238 (306)
Q Consensus 160 d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~~~-~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~ 238 (306)
+.+..++.+||||||.+|||++|||||||+||||+|+++..+.+. .++|+.|+..+.+++..+........+++++..|
T Consensus 152 d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ 231 (301)
T PLN03006 152 ESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHC 231 (301)
T ss_pred cccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCCchhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHH
Confidence 875567999999999999999999999999999999998665543 4699999999888877765433345678888999
Q ss_pred HHHHHHHHHHHHhhCHhHHHHHHcCccEEEEEEEEccCcEEEEeeccCCCCCc--CCCcccccccccccC
Q 021901 239 EKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNL--KESKEVAFRNRSFWS 306 (306)
Q Consensus 239 ~~~nV~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~tG~v~~~~~d~~~~~~--~~~~~~~~~~~~~~~ 306 (306)
+++||++||++|++||+|++++++|+|+|||||||+.||+|+.|+.+|..++. |||++|++|||+|||
T Consensus 232 ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (301)
T PLN03006 232 EKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 301 (301)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccccccccCCceeeecccccC
Confidence 99999999999999999999999999999999999999999999999988776 679999999999998
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=2.4e-66 Score=494.05 Aligned_cols=256 Identities=41% Similarity=0.732 Sum_probs=232.9
Q ss_pred chhhHHHHHHHhhhcCCcccccccCchhhhhhhcccchhhHHhhhcHHhHHHHHHHHHHHhhhhhhccChHHHhhhhcCC
Q 021901 40 IGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119 (306)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~f~~~~~~~~~~~~~~La~gQ 119 (306)
.+.+..+|+|||++|++|+.+|++|++++|++|+..... ...+++++++|++||++|+.+.+.+++++|+++++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ 158 (347)
T PLN03014 83 YDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSS----DKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQ 158 (347)
T ss_pred HHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCC----CCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCC
Confidence 688999999999999999999999999999999863221 1346899999999999999999999999999999999
Q ss_pred CCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCC-chhHHHHHHHHHhcCCceEEEeccCcchHHHHhhh
Q 021901 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (306)
Q Consensus 120 ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~-~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~ 198 (306)
+|+++||+||||||+|+.|||++|||+||+||+||+|+++|..+ .++.++|||||.+|+|++|||||||+||||+|+++
T Consensus 159 ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~ 238 (347)
T PLN03014 159 SPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 238 (347)
T ss_pred CCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHh
Confidence 99999999999999999999999999999999999999987433 46889999999999999999999999999999998
Q ss_pred cCCCCC--hhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHHHHHHHHHhhCHhHHHHHHcCccEEEEEEEEccC
Q 021901 199 MQDEED--PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVD 276 (306)
Q Consensus 199 ~~~~~~--~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~t 276 (306)
..+++. .++|++|+..+.|++.++.......++.+++..|+++||++||++|++||+|++++++|+|+|||||||++|
T Consensus 239 ~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~T 318 (347)
T PLN03014 239 FPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVK 318 (347)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCC
Confidence 654332 469999999999999887766666678888888999999999999999999999999999999999999999
Q ss_pred cEEEEeeccCCCCCcCCCcccccccccc
Q 021901 277 CTFEKWTLDYDGSNLKESKEVAFRNRSF 304 (306)
Q Consensus 277 G~v~~~~~d~~~~~~~~~~~~~~~~~~~ 304 (306)
|+|+.|+.++.. ++..++|+.++
T Consensus 319 G~V~~l~~~~~~-----~~~~~~~~~~~ 341 (347)
T PLN03014 319 GAFELWGLEFGL-----SETSSVKDVAT 341 (347)
T ss_pred ceEEEecccccc-----CCccccchhHh
Confidence 999999999998 77899999886
No 3
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=7.7e-64 Score=474.69 Aligned_cols=246 Identities=43% Similarity=0.760 Sum_probs=220.7
Q ss_pred chhhHHHHHHHhhhcCCcccccccCchhhhhhhcccchhhHHhhhcHHhHHHHHHHHHHHhhhhhhccChHHHhhhhcCC
Q 021901 40 IGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119 (306)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~f~~~~~~~~~~~~~~La~gQ 119 (306)
.+++..+|+|||++|++|+.+|++|++++|++|+..... ...+++++++|++||.+|+.+.+.+++++|++|+.||
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La~gQ 153 (330)
T PLN03019 78 YEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSS----DSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKGQ 153 (330)
T ss_pred HHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCC----CCchhHHHHHHHHHHHHHHhccccccHHHHHhhccCC
Confidence 788999999999999999999999999999999864321 1346899999999999999999989999999999999
Q ss_pred CCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCC-chhHHHHHHHHHhcCCceEEEeccCcchHHHHhhh
Q 021901 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (306)
Q Consensus 120 ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~-~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~ 198 (306)
+|+++||+||||||+|+.|||++|||+|||||+||+|+++|.+. +++.++|||||.+|||++|||||||+||||+|+++
T Consensus 154 ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal~ 233 (330)
T PLN03019 154 SPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 233 (330)
T ss_pred CCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 99999999999999999999999999999999999999987533 56889999999999999999999999999999998
Q ss_pred cCCCCC--hhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHHHHHHHHHhhCHhHHHHHHcCccEEEEEEEEccC
Q 021901 199 MQDEED--PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVD 276 (306)
Q Consensus 199 ~~~~~~--~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~t 276 (306)
..+++. +++|..|+..+.|++.+........+++++++.+++ ||+.||++|+++|+|++++++|+|.||||+||++|
T Consensus 234 ~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YDl~T 312 (330)
T PLN03019 234 FPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYDFVN 312 (330)
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCC
Confidence 654432 469999999999998776554444567777777776 99999999999999999999999999999999999
Q ss_pred cEEEEeeccCCCCC
Q 021901 277 CTFEKWTLDYDGSN 290 (306)
Q Consensus 277 G~v~~~~~d~~~~~ 290 (306)
|+|+.|..+|+.++
T Consensus 313 G~V~~~~~~~~~~~ 326 (330)
T PLN03019 313 GSFELWELQFGISP 326 (330)
T ss_pred ceEEEEccccCcCC
Confidence 99999999999844
No 4
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=1.2e-59 Score=436.95 Aligned_cols=244 Identities=44% Similarity=0.787 Sum_probs=217.8
Q ss_pred chhhHHHHHHHhhhcCCcccccccCchhhhhhhcccchhhHHhhhcHHhHHHHHHHHHHHhhhhhhccChHHHhhhhcCC
Q 021901 40 IGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119 (306)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~f~~~~~~~~~~~~~~La~gQ 119 (306)
+++.-.+|.++|+.+..++.+++.+...++..|+++. ..+.+++++|++||.+|+...+.+++++|+.++.||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ 78 (258)
T PLN00416 6 YEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-------SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQ 78 (258)
T ss_pred HHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCC
Confidence 6778889999999999999999999999999999874 346689999999999999998888999999999999
Q ss_pred CCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCC-chhHHHHHHHHHhcCCceEEEeccCcchHHHHhhh
Q 021901 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (306)
Q Consensus 120 ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~-~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~ 198 (306)
+|+++||+||||||+|+.|||++|||+|||||+||+|+++|... +++.+||||||.+|||++|||||||+||||+|+++
T Consensus 79 ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~ 158 (258)
T PLN00416 79 TPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMS 158 (258)
T ss_pred CCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 99999999999999999999999999999999999999987533 46889999999999999999999999999999987
Q ss_pred cCCCCC---hhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHHHHHHHHHhhCHhHHHHHHcCccEEEEEEEEcc
Q 021901 199 MQDEED---PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFV 275 (306)
Q Consensus 199 ~~~~~~---~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~ 275 (306)
..+... .+++..|+..+.|++..........++.+.+..++++||++||++|++||+|++++++|+|+||||+||+.
T Consensus 159 ~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~ 238 (258)
T PLN00416 159 IEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFV 238 (258)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECC
Confidence 432211 25899999999998876655444556667777888999999999999999999999999999999999999
Q ss_pred CcEEEEeeccCCCCC
Q 021901 276 DCTFEKWTLDYDGSN 290 (306)
Q Consensus 276 tG~v~~~~~d~~~~~ 290 (306)
||+|+.+..++..++
T Consensus 239 TG~v~~~~~~~~~~p 253 (258)
T PLN00416 239 KGTFDLWELDFKTTP 253 (258)
T ss_pred CceEEEeccCcCCCC
Confidence 999999999876644
No 5
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=2.6e-58 Score=431.33 Aligned_cols=218 Identities=55% Similarity=1.035 Sum_probs=194.5
Q ss_pred cHHhHHHHHHHHHHHhhhhhhccChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCc
Q 021901 85 NECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPS 164 (306)
Q Consensus 85 ~~~~~l~~l~~rf~~f~~~~~~~~~~~~~~La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~ 164 (306)
...+.|++|++||.+|+..++.+++++|+.|+.||+|+++||+||||||||+.|||++|||+||+||+||+|++++.++.
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g~~ 150 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNGPT 150 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCCcc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999877656
Q ss_pred hhHHHHHHHHHhcCCceEEEeccCcchHHHHhhhcCCC-CC-hhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHH
Q 021901 165 ETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE-ED-PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKES 242 (306)
Q Consensus 165 ~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~-~~-~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~n 242 (306)
++.++|||||.+|+|++|||||||+||||+|+++.... +. .+++++|+..+.+++.+........++++.++.++++|
T Consensus 151 ~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~N 230 (290)
T PLN02154 151 ETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKES 230 (290)
T ss_pred chhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999875322 11 36899999887776654432223345677778889999
Q ss_pred HHHHHHHHhhCHhHHHHHHcCccEEEEEEEEccCcEEEEeeccCCCCCcCCCcccccccccccC
Q 021901 243 VNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFWS 306 (306)
Q Consensus 243 V~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~tG~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 306 (306)
|+.||++|++||+|++++++|+|+||||+||+.||+|+.|+..+. +.|+.|++|||.+||
T Consensus 231 V~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~----~f~~~~~~~~~~~~~ 290 (290)
T PLN02154 231 IKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD----KTNYGFYISDREIWS 290 (290)
T ss_pred HHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC----cccCceeeccccccC
Confidence 999999999999999999999999999999999999999999886 478889999999998
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.9e-53 Score=376.85 Aligned_cols=187 Identities=48% Similarity=0.754 Sum_probs=165.9
Q ss_pred HHHHhhhhhhccChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCC--CCchhHHHHHHH
Q 021901 96 RFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCES--GPSETNAALEFA 173 (306)
Q Consensus 96 rf~~f~~~~~~~~~~~~~~La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~--~~~~~~aSLEyA 173 (306)
||.+|++..+.+++++|++|+.||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++. +..++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 577888888888999999999999999999999999999999999999999999999999998754 235799999999
Q ss_pred HHhcCCceEEEeccCcchHHHHhhhcCC-CCChhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHHHHHHHHHhh
Q 021901 174 VNSVKVENILVIGHSRCGGIHALMSMQD-EEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLT 252 (306)
Q Consensus 174 V~~L~V~~IVV~GHs~CGav~Aal~~~~-~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s 252 (306)
|.+|+|++|||||||+||||+|+++... ....+++..|+..+.+++..........+..+..+.++++||.+||++|++
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~~ 160 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPEDLLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLLT 160 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987543 112358999999999998876654444455666778899999999999999
Q ss_pred CHhHHHHHHcCccEEEEEEEEccCcEEEEe
Q 021901 253 YPWIEEKVRAGALSLHGGYYNFVDCTFEKW 282 (306)
Q Consensus 253 ~p~I~~~v~~g~L~I~G~~YDi~tG~v~~~ 282 (306)
+|+|++++++|+|+||||+||+.||+|+.+
T Consensus 161 ~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 161 YPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred CHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 999999999999999999999999999864
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.6e-52 Score=381.16 Aligned_cols=194 Identities=24% Similarity=0.436 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHhhhhhhccChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchhHH
Q 021901 89 FFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNA 168 (306)
Q Consensus 89 ~l~~l~~rf~~f~~~~~~~~~~~~~~La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~a 168 (306)
.+++|++||++|+...+..++++|+.++.||+|+++||+||||||+|+.+||++|||+||+||+||+|++.+. ++.+
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~---~~~~ 79 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL---NCLS 79 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc---chHH
Confidence 4789999999999998888999999999999999999999999999999999999999999999999998764 5899
Q ss_pred HHHHHHHhcCCceEEEeccCcchHHHHhhhcCCCCChhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHHHHHHH
Q 021901 169 ALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLL 248 (306)
Q Consensus 169 SLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~ 248 (306)
+|||||.+|||++|||||||+||||+|+++... .++++.|+..+.+++..........+.++.++.++++||..|++
T Consensus 80 ~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~---~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~qv~ 156 (220)
T PRK10437 80 VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPE---LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVY 156 (220)
T ss_pred HHHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC---cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987533 25899999999999877555444555667778889999999999
Q ss_pred HHhhCHhHHHHHHcC-ccEEEEEEEEccCcEEEEeeccCCC
Q 021901 249 NLLTYPWIEEKVRAG-ALSLHGGYYNFVDCTFEKWTLDYDG 288 (306)
Q Consensus 249 ~L~s~p~I~~~v~~g-~L~I~G~~YDi~tG~v~~~~~d~~~ 288 (306)
+|+++|+|++++++| +|+||||+||+.||+|+.++.....
T Consensus 157 ~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~ 197 (220)
T PRK10437 157 NLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATN 197 (220)
T ss_pred HHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCc
Confidence 999999999999999 6999999999999999998876654
No 8
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.2e-52 Score=370.65 Aligned_cols=180 Identities=28% Similarity=0.509 Sum_probs=159.2
Q ss_pred HHHhhhhhhccChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHh
Q 021901 97 FLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNS 176 (306)
Q Consensus 97 f~~f~~~~~~~~~~~~~~La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~ 176 (306)
|.+|+...+.+++++|++++.||+|+++|||||||||+|+.+||++|||+||+||+||+|++.+. ++.+||||||.+
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~---~~~asleyAv~~ 77 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL---NCLSVLQYAVDV 77 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc---chhhhHHHHHHh
Confidence 46788888889999999999999999999999999999999999999999999999999998764 689999999999
Q ss_pred cCCceEEEeccCcchHHHHhhhcCCCCChhhHHHHHHhchhhHHhhHHhcCCC-ChhHHhhHHHHHHHHHHHHHHhhCHh
Q 021901 177 VKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSL-SFDHQCSHCEKESVNCSLLNLLTYPW 255 (306)
Q Consensus 177 L~V~~IVV~GHs~CGav~Aal~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~s~p~ 255 (306)
|||++|||||||+||||+|+++... .+++.+|+..+.+++.......... +.++....++++||++||++|+++|+
T Consensus 78 L~v~~IvV~GHs~CGav~a~~~~~~---~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~ 154 (182)
T cd00883 78 LKVKHIIVCGHYGCGGVKAALTGKR---LGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTPI 154 (182)
T ss_pred cCCCEEEEecCCCchHHHHHHcCCC---CccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 9999999999999999999987542 3589999999888776544333222 44556678899999999999999999
Q ss_pred HHHHHHc-CccEEEEEEEEccCcEEEEe
Q 021901 256 IEEKVRA-GALSLHGGYYNFVDCTFEKW 282 (306)
Q Consensus 256 I~~~v~~-g~L~I~G~~YDi~tG~v~~~ 282 (306)
|++++++ |+|+||||+||+.||+|+.+
T Consensus 155 i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 155 VQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999 89999999999999999864
No 9
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=2.3e-50 Score=372.39 Aligned_cols=188 Identities=21% Similarity=0.292 Sum_probs=162.0
Q ss_pred cHHhHHHHHHHHHHHhhhhhhccChHHH---hhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCC
Q 021901 85 NECDFFDKMKHRFLSFKKQKFMENLEHY---QNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCES 161 (306)
Q Consensus 85 ~~~~~l~~l~~rf~~f~~~~~~~~~~~~---~~La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~ 161 (306)
.|.+++++|++||.+|++..+. .+.++ .++++||+|+++||+|||||||||.|||.+|||+||+||+||+|++
T Consensus 52 ~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~--- 127 (245)
T PRK15219 52 TPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND--- 127 (245)
T ss_pred CHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc---
Confidence 4568899999999999998764 33333 3467999999999999999999999999999999999999999975
Q ss_pred CCchhHHHHHHHHHhcCCceEEEeccCcchHHHHhhhcCCCCChhhHHHHHHhchhhHHhhHHhc-CCCChhHHhhHHHH
Q 021901 162 GPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAA-SSLSFDHQCSHCEK 240 (306)
Q Consensus 162 ~~~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~~~~~~i~~wl~~~~pa~~~~~~~~-~~~~~~~~~~~~~~ 240 (306)
++.+||||||.+|||++|||||||+||||+|+++... .+++..|+..+.|++...+... ...+.++.+..+++
T Consensus 128 ---~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~---~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~ 201 (245)
T PRK15219 128 ---DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE---LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDAVAR 201 (245)
T ss_pred ---chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC---cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHH
Confidence 3789999999999999999999999999999987543 3589999999999987653221 11234456677889
Q ss_pred HHHHHHHHHHhh-CHhHHHHHHcCccEEEEEEEEccCcEEEEe
Q 021901 241 ESVNCSLLNLLT-YPWIEEKVRAGALSLHGGYYNFVDCTFEKW 282 (306)
Q Consensus 241 ~nV~~qv~~L~s-~p~I~~~v~~g~L~I~G~~YDi~tG~v~~~ 282 (306)
+||+.|+++|++ +|++++.+++|+|+||||+||++||+|+++
T Consensus 202 ~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 202 KNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 999999999996 899999999999999999999999999876
No 10
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=365.53 Aligned_cols=197 Identities=27% Similarity=0.434 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHhhhhhhccChHHHhhhh-cCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchh
Q 021901 88 DFFDKMKHRFLSFKKQKFMENLEHYQNLA-DGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSET 166 (306)
Q Consensus 88 ~~l~~l~~rf~~f~~~~~~~~~~~~~~La-~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~ 166 (306)
+.++.|+++|.+|.+..+...+++|..++ .+|+|+++|||||||||+||.+||++|||+||+||+||+|++++. ++
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~---~~ 78 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDG---SV 78 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCcc---ch
Confidence 46899999999999998888899999876 569999999999999999999999999999999999999998763 69
Q ss_pred HHHHHHHHHhcCCceEEEeccCcchHHHHhhhcCCCCChhhHHHHHHhchhhHHhhHHhcCCCChh-HHhhHHHHHHHHH
Q 021901 167 NAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFD-HQCSHCEKESVNC 245 (306)
Q Consensus 167 ~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~-~~~~~~~~~nV~~ 245 (306)
++||||||.+|||++|||||||+||||+|+++....+.. .+..|+..+.+............+.. ++....++.||++
T Consensus 79 l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~-~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV~~ 157 (207)
T COG0288 79 LRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK-PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVRE 157 (207)
T ss_pred hHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc-ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999887665533 59999988777765544332222222 4555667899999
Q ss_pred HHHHHhhCHhHHHHHHcCc-cEEEEEEEEccCcEEEEeeccCCC
Q 021901 246 SLLNLLTYPWIEEKVRAGA-LSLHGGYYNFVDCTFEKWTLDYDG 288 (306)
Q Consensus 246 qv~~L~s~p~I~~~v~~g~-L~I~G~~YDi~tG~v~~~~~d~~~ 288 (306)
||++|+++|.|+.++..|+ |.||||+||++||+++.++.....
T Consensus 158 qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~ 201 (207)
T COG0288 158 QVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATID 201 (207)
T ss_pred HHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccc
Confidence 9999999999999999888 999999999999999988876654
No 11
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-48 Score=357.83 Aligned_cols=239 Identities=39% Similarity=0.670 Sum_probs=214.8
Q ss_pred HHHHHhhhcCCcccccccCchhhhhhhcccchhhHHhhhcHHhHHHHHHHHHHHhhhhhhccChHHHhhhhcCCCCcEEE
Q 021901 46 SLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMV 125 (306)
Q Consensus 46 ~~~~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~f~~~~~~~~~~~~~~La~gQ~P~~lV 125 (306)
.+.++|.++.++ +|++++.++|++ .+.+++++++|..|+.+.+..+|..|..++++|+|+.||
T Consensus 36 ~dsrml~~r~~~--~~~~~~~~~~~~---------------~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~ 98 (276)
T KOG1578|consen 36 MDSRMLPTRYNL--VAAAKIKKLTAE---------------FDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLA 98 (276)
T ss_pred HHhhccchhhhh--hhhhhhhhhhhc---------------cchHHHHHhhHhhhccccCCCChhhhHHHhccCCCcceE
Confidence 445566666666 788888888872 478899999999999999999999999999999999999
Q ss_pred EeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCC-chhHHHHHHHHHhcCCceEEEeccCcchHHHHhhhcCCCCC
Q 021901 126 IACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEED 204 (306)
Q Consensus 126 ItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~-~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~~~ 204 (306)
|+|+||||+|++|++++|||.|++||++|+++|.+..+ ..+.++|||||.+|+|++|+||||++|||++++|....++.
T Consensus 99 i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~ 178 (276)
T KOG1578|consen 99 LECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAP 178 (276)
T ss_pred EEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhcccccccCc
Confidence 99999999999999999999999999999999887655 77899999999999999999999999999999999877665
Q ss_pred -hhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHHHHHHHHHhhCHhHHHHHHcCccEEEEEEEEccCcEEEEee
Q 021901 205 -PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWT 283 (306)
Q Consensus 205 -~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~tG~v~~~~ 283 (306)
..++.+|+.+..+++..++.....+.+++||..|+.++++.++.+|.+||++++++.+|.+.+||++||+..|.+++|.
T Consensus 179 ~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ 258 (276)
T KOG1578|consen 179 SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVHGGYYNFSKGTKEFWE 258 (276)
T ss_pred chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceeeeeeeEEeccCceeEEE
Confidence 3699999999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCCcccccccccccC
Q 021901 284 LDYDGSNLKESKEVAFRNRSFWS 306 (306)
Q Consensus 284 ~d~~~~~~~~~~~~~~~~~~~~~ 306 (306)
.|= +.+..+....+.+|+
T Consensus 259 lde-----kt~~~~~~~~~~~~s 276 (276)
T KOG1578|consen 259 LDE-----KTVDGLKTEKRSVYS 276 (276)
T ss_pred ecc-----ccccccccccccccC
Confidence 991 234456666677764
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=9.7e-46 Score=320.37 Aligned_cols=148 Identities=30% Similarity=0.497 Sum_probs=136.3
Q ss_pred HhHHHHHHHHHHHhhhhhhc---cChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCC
Q 021901 87 CDFFDKMKHRFLSFKKQKFM---ENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP 163 (306)
Q Consensus 87 ~~~l~~l~~rf~~f~~~~~~---~~~~~~~~La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~ 163 (306)
.+++++|++||.+|.+.++. .+++.|..++++|+|+++||||||||++|+.+|+++|||+||+||+||+|++
T Consensus 2 ~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~----- 76 (154)
T cd03378 2 DEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD----- 76 (154)
T ss_pred hHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh-----
Confidence 47899999999999987543 1256789999999999999999999999999999999999999999999986
Q ss_pred chhHHHHHHHHHhcCCceEEEeccCcchHHHHhhhcCCCCChhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHH
Q 021901 164 SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESV 243 (306)
Q Consensus 164 ~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV 243 (306)
++++|||||+.+|||++|||||||+||+++++ +.++||
T Consensus 77 -~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-----------------------------------------~~~~nV 114 (154)
T cd03378 77 -DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-----------------------------------------AVRANV 114 (154)
T ss_pred -hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-----------------------------------------HHHHHH
Confidence 47999999999999999999999999999876 357899
Q ss_pred HHHHHHHhhCHhHHH-HHHcCccEEEEEEEEccCcEEEE
Q 021901 244 NCSLLNLLTYPWIEE-KVRAGALSLHGGYYNFVDCTFEK 281 (306)
Q Consensus 244 ~~qv~~L~s~p~I~~-~v~~g~L~I~G~~YDi~tG~v~~ 281 (306)
+.||++|+++|+|++ ++++|+|+||||+||++||+|+.
T Consensus 115 ~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~ 153 (154)
T cd03378 115 KATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEF 153 (154)
T ss_pred HHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEe
Confidence 999999999999988 99999999999999999999986
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=1.7e-43 Score=303.12 Aligned_cols=152 Identities=33% Similarity=0.561 Sum_probs=123.7
Q ss_pred EEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCcchHHHHhhhcCCC
Q 021901 123 FMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE 202 (306)
Q Consensus 123 ~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~ 202 (306)
++||+|||||++|+.+|+++|||+||+||+||+|++.+ .++++|||||+.+|||++|||||||+|||+++++...+
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~---~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~- 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD---DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE- 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH-
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc---cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc-
Confidence 58999999999999999999999999999999998774 37999999999999999999999999999998876422
Q ss_pred CChhhHHHHHHhchhhHHhh-HHhcCCCChhHHhhHHHHHHHHHHHHHHhhCHhHHHHHHcCccEEEEEEEEccCcEE
Q 021901 203 EDPSFIRSWVLVGKNARLNT-KAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTF 279 (306)
Q Consensus 203 ~~~~~i~~wl~~~~pa~~~~-~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~tG~v 279 (306)
.++.+++|+....++.... ..........+.....+++||++||++|+++|+|++++++|+|.||||+||++||+|
T Consensus 77 -~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~v 153 (153)
T PF00484_consen 77 -EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGKV 153 (153)
T ss_dssp -TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTEE
T ss_pred -ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCccC
Confidence 2358999999999887763 322222222223334489999999999999999999999999999999999999986
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.4e-41 Score=282.60 Aligned_cols=119 Identities=41% Similarity=0.728 Sum_probs=112.8
Q ss_pred CCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCcchHHHHhhh
Q 021901 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (306)
Q Consensus 119 Q~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~ 198 (306)
|+|+++||+|||||++|+.+||++|||+||+||+||+|++.+. ++++|||||+.+||+++|+|||||+|||+++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~~---~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a--- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYDL---DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA--- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCcc---cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH---
Confidence 8999999999999999999999999999999999999998653 6999999999999999999999999999886
Q ss_pred cCCCCChhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHHHHHHHHHhhCHhHHHHHHcCccEEEEEEEEccCcE
Q 021901 199 MQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCT 278 (306)
Q Consensus 199 ~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~tG~ 278 (306)
..++||++|+++|+++|+++++++.+++.|||++||++||+
T Consensus 75 ---------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~tG~ 115 (119)
T cd00382 75 ---------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIETGK 115 (119)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCCCE
Confidence 25789999999999999999999999999999999999999
Q ss_pred EEEe
Q 021901 279 FEKW 282 (306)
Q Consensus 279 v~~~ 282 (306)
++.+
T Consensus 116 v~~~ 119 (119)
T cd00382 116 LEVL 119 (119)
T ss_pred EEeC
Confidence 9864
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.6e-38 Score=270.25 Aligned_cols=141 Identities=22% Similarity=0.309 Sum_probs=112.4
Q ss_pred CCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCcchHHHHhhh
Q 021901 119 QAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (306)
Q Consensus 119 Q~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~ 198 (306)
++++++||+|||||++|+.+||++|||+||+||+||+|++ ++++||+||+.+||+++|+|||||+|||++++.+
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~ 74 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE 74 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecHH
Confidence 4689999999999999999999999999999999999987 4889999999999999999999999999998643
Q ss_pred cCCCCChhhHHHHHHhchhhHHhhHHhcCCCChhHHhhHHHHHHHHHHHHHHhhCHhHHHHHHcCccEEEEEEEEccCcE
Q 021901 199 MQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCT 278 (306)
Q Consensus 199 ~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~p~I~~~v~~g~L~I~G~~YDi~tG~ 278 (306)
.+..|+........... ............+++||++|+++|+++|+|++ +++||||+||+.||+
T Consensus 75 --------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~tG~ 138 (142)
T cd03379 75 --------ELKEKMKERGIAEAYGG---IDKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKTGK 138 (142)
T ss_pred --------HHHHHHHHhcCcchhcc---cCcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCCCE
Confidence 23456543111100000 01111111223568999999999999999997 589999999999999
Q ss_pred EEE
Q 021901 279 FEK 281 (306)
Q Consensus 279 v~~ 281 (306)
++.
T Consensus 139 v~~ 141 (142)
T cd03379 139 LTE 141 (142)
T ss_pred EEe
Confidence 985
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.20 E-value=5.4e-08 Score=90.98 Aligned_cols=185 Identities=19% Similarity=0.198 Sum_probs=117.1
Q ss_pred HHHHHHHhhhhhhccChHHHhhhhcCCCCcEEEEeecCCCCCcccc----------------cCCCCCceEEEeccCCCC
Q 021901 93 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNI----------------LGFQPGEAFIVRNVANMV 156 (306)
Q Consensus 93 l~~rf~~f~~~~~~~~~~~~~~La~gQ~P~~lVItCsDSRV~pe~i----------------l~~~pGd~FVvRNaGN~V 156 (306)
|+.|..+|+.....+ .-.++..-++|.+..++|+|||+-|..- +..+.||.|++||.||.+
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 456666776664322 2256667789999999999999999776 567899999999999999
Q ss_pred CCCCCCC------chhHHHHHHHHHhcCCceEEEeccCcchHHHHhhhcCCC----CC---hhhHHHHHHhchhh-HHh-
Q 021901 157 PPCESGP------SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE----ED---PSFIRSWVLVGKNA-RLN- 221 (306)
Q Consensus 157 ~~~d~~~------~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~~~~~----~~---~~~i~~wl~~~~pa-~~~- 221 (306)
+.....+ +--.++|+.|+..-...||+||||++|=+++........ .. .+.++.|+....-. +..
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 8644322 122356777888889999999999999999976554331 11 25788887642211 000
Q ss_pred -------hHH------hcCCCChhH-H-----------hhHHHHHHHHHHHHHHhhCHhHH--HHHHcCccEEEE--EEE
Q 021901 222 -------TKA------AASSLSFDH-Q-----------CSHCEKESVNCSLLNLLTYPWIE--EKVRAGALSLHG--GYY 272 (306)
Q Consensus 222 -------~~~------~~~~~~~~~-~-----------~~~~~~~nV~~qv~~L~s~p~I~--~~v~~g~L~I~G--~~Y 272 (306)
.+. +....+|.+ | ...+...+..+|.+|..++.+.. ..+......+++ .+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 000 000111211 1 01223457778999999888776 455555555555 334
Q ss_pred EccCcEEE
Q 021901 273 NFVDCTFE 280 (306)
Q Consensus 273 Di~tG~v~ 280 (306)
+...|..+
T Consensus 240 l~~~G~~Y 247 (276)
T KOG1578|consen 240 LQVHGGYY 247 (276)
T ss_pred eeeeeeeE
Confidence 44444433
No 17
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=49.55 E-value=14 Score=29.66 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=20.3
Q ss_pred ccEEEEEEEEccCcEEEEeeccCC
Q 021901 264 ALSLHGGYYNFVDCTFEKWTLDYD 287 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~d~~ 287 (306)
+|.|+||+++..+|+|+.+-....
T Consensus 29 ~lgl~G~V~N~~DGsVeiva~G~~ 52 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVAEGPD 52 (92)
T ss_pred HCCCEEEEEECCCCeEEEEEEcCH
Confidence 367999999999999998876554
No 18
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=48.36 E-value=27 Score=38.20 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHhhCHhHHHHHHcCcc------EEEEEEEEccCcEEEEeeccC
Q 021901 248 LNLLTYPWIEEKVRAGAL------SLHGGYYNFVDCTFEKWTLDY 286 (306)
Q Consensus 248 ~~L~s~p~I~~~v~~g~L------~I~G~~YDi~tG~v~~~~~d~ 286 (306)
..|.+.|-||+.+++..| .-+|+..|.-|-+|+.++.+.
T Consensus 539 A~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 539 AALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 345667777777776644 458999999999999998765
No 19
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=47.39 E-value=1.1e+02 Score=25.59 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=65.1
Q ss_pred hhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCcchHHH
Q 021901 115 LADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIH 194 (306)
Q Consensus 115 La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~ 194 (306)
+..|-.|.+.++-+==-|-+...... .....+.++|..+.+.. +...+|..|+..-+--.|+|-|-.|=-++-
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~------el~~ai~~a~~~~~~~~I~V~GEEDL~~lP 78 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE------ELIEAIKKALESGKPVVIFVDGEEDLAVLP 78 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH------HHHHHHHHHHhCCCCEEEEEeChHHHHHHH
Confidence 45788999999988888887655444 56678999999999986 478899999878777899999999998888
Q ss_pred HhhhcCC
Q 021901 195 ALMSMQD 201 (306)
Q Consensus 195 Aal~~~~ 201 (306)
+.+..+.
T Consensus 79 ail~aP~ 85 (121)
T PF04019_consen 79 AILYAPE 85 (121)
T ss_pred HHHhCCC
Confidence 8766554
No 20
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=43.49 E-value=46 Score=28.30 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=36.5
Q ss_pred cChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcC
Q 021901 107 ENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVK 178 (306)
Q Consensus 107 ~~~~~~~~La~gQ~P~~lVItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~ 178 (306)
=||.+|++..-.+-| ++|+.|.+..+..+.. ..+++-.++ .||+ ||+||++.+.
T Consensus 59 IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v--~Gdv-------------sl~~ALe~ia 112 (130)
T TIGR02742 59 IDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVV--YGNV-------------SLKGALEKMA 112 (130)
T ss_pred EChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEE--Eecc-------------cHHHHHHHHH
Confidence 489999998877888 7788888875544333 355554433 4665 6888877654
No 21
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=42.46 E-value=29 Score=25.55 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHhhCHhHHHHHHcCccEEEEE
Q 021901 246 SLLNLLTYPWIEEKVRAGALSLHGG 270 (306)
Q Consensus 246 qv~~L~s~p~I~~~v~~g~L~I~G~ 270 (306)
-|..|.+||-+-+.+++|++.+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3678899999999999999999985
No 22
>PRK11440 putative hydrolase; Provisional
Probab=40.67 E-value=55 Score=28.54 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=32.8
Q ss_pred cCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCcchHHH
Q 021901 139 LGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIH 194 (306)
Q Consensus 139 l~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~ 194 (306)
+...+||.++.++--+-.... .|+.-+...|+++|||+|=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~T---------~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYGT---------DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCCC---------CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 345678988888765544332 37777789999999999965544443
No 23
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=35.10 E-value=32 Score=29.67 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=35.2
Q ss_pred EEeecCCCCCcccccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHh-----cCCceEEEeccCcchHHHHhh
Q 021901 125 VIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNS-----VKVENILVIGHSRCGGIHALM 197 (306)
Q Consensus 125 VItCsDSRV~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~-----L~V~~IVV~GHs~CGav~Aal 197 (306)
++-+.|-|..|+.-+.... .++.++++|...+ ...+.|+|+|||..|.+...+
T Consensus 31 ~v~~~~Yrl~p~~~~p~~~--------------------~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~ 88 (211)
T PF07859_consen 31 VVVSIDYRLAPEAPFPAAL--------------------EDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSL 88 (211)
T ss_dssp EEEEEE---TTTSSTTHHH--------------------HHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHH
T ss_pred EEEEeeccccccccccccc--------------------cccccceeeeccccccccccccceEEeecccccchhhhh
Confidence 4667788887754332111 2577899998888 778899999999888766543
No 24
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=31.65 E-value=1.3e+02 Score=25.24 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=35.0
Q ss_pred CceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCcchHHHHh
Q 021901 144 GEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHAL 196 (306)
Q Consensus 144 Gd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aa 196 (306)
||..+.++--|..... .|+.-+...|+++|+|+|-.-.+-|.+.
T Consensus 86 ~~~vi~K~~~saf~~t---------~L~~~L~~~gi~~vil~G~~t~~CV~~T 129 (174)
T PF00857_consen 86 GDPVIEKNRYSAFFGT---------DLDEILRKRGIDTVILCGVATDVCVLAT 129 (174)
T ss_dssp TSEEEEESSSSTTTTS---------SHHHHHHHTTESEEEEEEESTTTHHHHH
T ss_pred ccceEEeecccccccc---------cccccccccccceEEEcccccCcEEehh
Confidence 9999999977776433 3777788899999999998777776653
No 25
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=28.88 E-value=30 Score=29.94 Aligned_cols=14 Identities=43% Similarity=0.812 Sum_probs=12.4
Q ss_pred CceEEEeccCcchH
Q 021901 179 VENILVIGHSRCGG 192 (306)
Q Consensus 179 V~~IVV~GHs~CGa 192 (306)
+.+|.|+||.+||=
T Consensus 3 ~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 3 IRNIAIIGHVDSGK 16 (188)
T ss_dssp EEEEEEEESTTSSH
T ss_pred EEEEEEECCCCCCc
Confidence 56899999999994
No 26
>PRK14432 acylphosphatase; Provisional
Probab=27.35 E-value=74 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.7
Q ss_pred ccEEEEEEEEccCcEEEEeec
Q 021901 264 ALSLHGGYYNFVDCTFEKWTL 284 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~ 284 (306)
++.|.||+.+..+|.|+.+-.
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~~ 47 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVAF 47 (93)
T ss_pred HhCCEEEEEECCCCCEEEEEE
Confidence 367999999999999887653
No 27
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=27.27 E-value=37 Score=29.40 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.5
Q ss_pred CceEEEeccCcchH
Q 021901 179 VENILVIGHSRCGG 192 (306)
Q Consensus 179 V~~IVV~GHs~CGa 192 (306)
+++|+++||++||=
T Consensus 2 ~r~i~ivG~~~~GK 15 (194)
T cd01891 2 IRNIAIIAHVDHGK 15 (194)
T ss_pred ccEEEEEecCCCCH
Confidence 67999999999993
No 28
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=27.27 E-value=21 Score=27.41 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=14.1
Q ss_pred cEEEEEEEEccCcEEEE
Q 021901 265 LSLHGGYYNFVDCTFEK 281 (306)
Q Consensus 265 L~I~G~~YDi~tG~v~~ 281 (306)
...|||.||+.||++..
T Consensus 64 Cp~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 64 CPCHGWRFDLDTGECVG 80 (97)
T ss_dssp ETTTTEEEETTTSBEEE
T ss_pred eCCcCCEEeCCCceEec
Confidence 45799999999998654
No 29
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=26.74 E-value=4.7e+02 Score=26.06 Aligned_cols=32 Identities=34% Similarity=0.630 Sum_probs=23.3
Q ss_pred ceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCc
Q 021901 145 EAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSR 189 (306)
Q Consensus 145 d~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~ 189 (306)
+.||. +||.|.. +|++|+. .+++.|+++||-.
T Consensus 225 ~~~V~--~gnfiG~----------~L~~A~~-~g~~~i~l~G~~G 256 (361)
T PRK00075 225 DAIIK--MGNFVGP----------MLKAAAR-LGVKKVLLVGHPG 256 (361)
T ss_pred hhEEE--eehhHHH----------HHHHHHH-cCCCEEEEEeeHH
Confidence 44443 6777653 7888876 7999999999953
No 30
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=26.04 E-value=1.4e+02 Score=25.81 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccC
Q 021901 140 GFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHS 188 (306)
Q Consensus 140 ~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs 188 (306)
.-.+||..+.++.-+-... ..|+.-+...|+++|||+|=.
T Consensus 84 ~~~~~~~v~~K~~~saF~~---------t~L~~~L~~~gi~~vvi~G~~ 123 (179)
T cd01015 84 APQEDEMVLVKKYASAFFG---------TSLAATLTARGVDTLIVAGCS 123 (179)
T ss_pred CCCCCCEEEecCccCCccC---------CcHHHHHHHcCCCEEEEeeec
Confidence 4457887766764332221 258888899999999999954
No 31
>TIGR00312 cbiD cobalamin biosynthesis protein CbiD. role_id
Probab=25.36 E-value=4.5e+02 Score=26.06 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCceEEEeccCc
Q 021901 167 NAALEFAVNSVKVENILVIGHSR 189 (306)
Q Consensus 167 ~aSLEyAV~~L~V~~IVV~GHs~ 189 (306)
..+|++|+. .+++.|+++||-.
T Consensus 222 G~~L~~a~~-~g~~~i~l~G~~G 243 (347)
T TIGR00312 222 GSMLVAAAA-VGVEEILLLGHAG 243 (347)
T ss_pred HHHHHHHHH-cCCCEEEEEeEhH
Confidence 347898887 6999999999954
No 32
>PRK14445 acylphosphatase; Provisional
Probab=24.74 E-value=1.1e+02 Score=24.12 Aligned_cols=21 Identities=33% Similarity=0.222 Sum_probs=17.7
Q ss_pred ccEEEEEEEEccCcEEEEeec
Q 021901 264 ALSLHGGYYNFVDCTFEKWTL 284 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~ 284 (306)
++.|.||+.+..+|.|+..-.
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~q 49 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIEAQ 49 (91)
T ss_pred hCCCEEEEEECCCCeEEEEEE
Confidence 468999999999999887554
No 33
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=24.69 E-value=1.4e+02 Score=26.44 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=29.7
Q ss_pred CCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCcch
Q 021901 141 FQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCG 191 (306)
Q Consensus 141 ~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CG 191 (306)
..+||.++-++--+-.... -|+.-+..+|++.|||+|=.--.
T Consensus 113 ~~~~d~vi~K~~~saF~~T---------~L~~~Lr~~gi~~lii~Gv~T~~ 154 (203)
T cd01013 113 PQPDDTVLTKWRYSAFKRS---------PLLERLKESGRDQLIITGVYAHI 154 (203)
T ss_pred CCCCCEEEeCCCcCCcCCC---------CHHHHHHHcCCCEEEEEEeccCh
Confidence 3578988777665554332 36667889999999999954433
No 34
>PRK14423 acylphosphatase; Provisional
Probab=24.63 E-value=1.1e+02 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=18.3
Q ss_pred ccEEEEEEEEccCcEEEEeecc
Q 021901 264 ALSLHGGYYNFVDCTFEKWTLD 285 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~d 285 (306)
++.|.||+.+..+|.|+.+-..
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~~G 51 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVFEG 51 (92)
T ss_pred HcCCEEEEEECCCCeEEEEEEE
Confidence 4789999999999998876543
No 35
>PRK14440 acylphosphatase; Provisional
Probab=23.69 E-value=97 Score=24.40 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.7
Q ss_pred ccEEEEEEEEccCcEEEEeeccC
Q 021901 264 ALSLHGGYYNFVDCTFEKWTLDY 286 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~d~ 286 (306)
++.|.||+.+..+|.|+.+-..-
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~~G~ 50 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVVAEGY 50 (90)
T ss_pred HcCCEEEEEECCCCCEEEEEEcC
Confidence 36799999999999998765543
No 36
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=23.00 E-value=94 Score=25.55 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCCceEEEeccCcchHHHHh
Q 021901 166 TNAALEFAVNSVKVENILVIGHSRCGGIHAL 196 (306)
Q Consensus 166 ~~aSLEyAV~~L~V~~IVV~GHs~CGav~Aa 196 (306)
....|...+..++.+.|+++|||-=|.+...
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~ 82 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALR 82 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccccccccc
Confidence 4566777889999999999999987765543
No 37
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=22.91 E-value=97 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCceEEEeccCcchHHHHhh
Q 021901 167 NAALEFAVNSVKVENILVIGHSRCGGIHALM 197 (306)
Q Consensus 167 ~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal 197 (306)
...+...+..++.+.++|+|||--|.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~ 113 (288)
T TIGR01250 83 VDELEEVREKLGLDKFYLLGHSWGGMLAQEY 113 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeehHHHHHHHH
Confidence 3445555778899999999999998876543
No 38
>PRK14429 acylphosphatase; Provisional
Probab=22.39 E-value=1.2e+02 Score=23.80 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=18.6
Q ss_pred ccEEEEEEEEccCcEEEEeeccC
Q 021901 264 ALSLHGGYYNFVDCTFEKWTLDY 286 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~d~ 286 (306)
++.|.||+.+..+|.|+.+-..-
T Consensus 27 ~~gl~G~V~N~~dG~Vei~~qG~ 49 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEILAQGS 49 (90)
T ss_pred HhCCEEEEEECCCCeEEEEEEeC
Confidence 36799999999999998765543
No 39
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.32 E-value=49 Score=31.26 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=11.8
Q ss_pred CceEEEeccCcchH
Q 021901 179 VENILVIGHSRCGG 192 (306)
Q Consensus 179 V~~IVV~GHs~CGa 192 (306)
-+-|-|+|||+||=
T Consensus 29 GEfvsilGpSGcGK 42 (248)
T COG1116 29 GEFVAILGPSGCGK 42 (248)
T ss_pred CCEEEEECCCCCCH
Confidence 36789999999994
No 40
>PRK03592 haloalkane dehalogenase; Provisional
Probab=22.20 E-value=93 Score=28.36 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCceEEEeccCcchHHHHhhh
Q 021901 167 NAALEFAVNSVKVENILVIGHSRCGGIHALMS 198 (306)
Q Consensus 167 ~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal~ 198 (306)
..-+.-.+.+|+.+.++|+|||-.|.+...+.
T Consensus 80 a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 80 ARYLDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 34556567889999999999999998876544
No 41
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.19 E-value=44 Score=27.47 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=10.7
Q ss_pred eEEEeccCcchH
Q 021901 181 NILVIGHSRCGG 192 (306)
Q Consensus 181 ~IVV~GHs~CGa 192 (306)
+|+|+||.+||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 489999999994
No 42
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=22.08 E-value=3.5e+02 Score=24.95 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=42.5
Q ss_pred cChHHHhhhhcCCCCcEEEEeecCCCC----CcccccCCCC-CceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCce
Q 021901 107 ENLEHYQNLADGQAPKFMVIACADSRV----CPSNILGFQP-GEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVEN 181 (306)
Q Consensus 107 ~~~~~~~~La~gQ~P~~lVItCsDSRV----~pe~il~~~p-Gd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~ 181 (306)
-+.+.+.+++..++|.=++.-|...+. +.+.++.... +-++++= |+-.| .-+++|-=....+|++.
T Consensus 53 v~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd---~v~dp------~NlGai~Rta~a~G~~~ 123 (244)
T PRK11181 53 ANRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILD---GVTDP------HNLGACLRSADAAGVHA 123 (244)
T ss_pred eCHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEc---CCCCc------chHHHHHHHHHHcCCCE
Confidence 356677888877777555555543332 1222232211 2233332 22222 23566777788999999
Q ss_pred EEEeccCcch
Q 021901 182 ILVIGHSRCG 191 (306)
Q Consensus 182 IVV~GHs~CG 191 (306)
|++.+|+.+.
T Consensus 124 vi~~~~~~~~ 133 (244)
T PRK11181 124 VIVPKDRSAQ 133 (244)
T ss_pred EEECCCCCCC
Confidence 9998887543
No 43
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=21.91 E-value=46 Score=27.78 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=11.4
Q ss_pred ceEEEeccCcchH
Q 021901 180 ENILVIGHSRCGG 192 (306)
Q Consensus 180 ~~IVV~GHs~CGa 192 (306)
++|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4799999999993
No 44
>PRK01160 hypothetical protein; Provisional
Probab=21.86 E-value=3.9e+02 Score=23.98 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=58.5
Q ss_pred hhhcCCCCcEEEEeecCCCCCcc-cccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhc--CC-ceEEEeccCc
Q 021901 114 NLADGQAPKFMVIACADSRVCPS-NILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV--KV-ENILVIGHSR 189 (306)
Q Consensus 114 ~La~gQ~P~~lVItCsDSRV~pe-~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L--~V-~~IVV~GHs~ 189 (306)
-+..|-.|.++++-.==-|-++. .++. .....+.++|..+.+.. +...+|++|...+ +. -.|+|-|-.|
T Consensus 54 ll~~g~~P~laIvD~kTkR~~~~~~i~~-~~~~~i~V~NPpGtIt~------el~~ai~~a~~~~~~~~~~~I~VdGEED 126 (178)
T PRK01160 54 LLRVGLKPFLAIYDLKTKRREYKPSIFE-HEEVSITVRNPPGTITL------ALLRAIKKAFSLIERGKKVRIEVNGEED 126 (178)
T ss_pred HHHCCCCCCEEEEeCccccCCCcccccc-ccccEEEEECCCCcccH------HHHHHHHHHHHhhhcCCeEEEEEcChHH
Confidence 45689999999998887777643 3322 22345889999999986 5788999985433 22 2688999999
Q ss_pred chHHHHhhhcCC
Q 021901 190 CGGIHALMSMQD 201 (306)
Q Consensus 190 CGav~Aal~~~~ 201 (306)
=-++-+.+..+.
T Consensus 127 La~lP~il~aP~ 138 (178)
T PRK01160 127 LAVIPAVLYAPL 138 (178)
T ss_pred HHHHHHHHhcCC
Confidence 888887766553
No 45
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.40 E-value=1.2e+02 Score=25.24 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=23.5
Q ss_pred cCCCCCceEE-EeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEec
Q 021901 139 LGFQPGEAFI-VRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIG 186 (306)
Q Consensus 139 l~~~pGd~FV-vRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~G 186 (306)
.+.+|||+++ +-+-||-- .+..++++| +..|.+.|.|.|
T Consensus 99 ~~~~~gDvli~iS~SG~s~--------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP--------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-SH--------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH--------HHHHHHHHH-HHCCCEEEEEeC
Confidence 3479999665 45555541 477888888 677888888765
No 46
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=21.28 E-value=36 Score=26.22 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.9
Q ss_pred cEEEEEEEEccCcEEE
Q 021901 265 LSLHGGYYNFVDCTFE 280 (306)
Q Consensus 265 L~I~G~~YDi~tG~v~ 280 (306)
...|||.||+.||+..
T Consensus 60 Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 60 CPLHGGRFDLRTGKAL 75 (98)
T ss_pred eCCcCCEEECCCCccc
Confidence 4689999999999865
No 47
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=21.25 E-value=3e+02 Score=22.95 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=33.2
Q ss_pred CCcEEEEeecCCC---CCcccccCCCCCceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccCcch
Q 021901 120 APKFMVIACADSR---VCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCG 191 (306)
Q Consensus 120 ~P~~lVItCsDSR---V~pe~il~~~pGd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs~CG 191 (306)
.|.+.|.+-.|.. .+....+.+.-..++++-.- .+.+.. ....++.-....++ .+||+|||.=.
T Consensus 52 ~~~~~V~GN~D~~~~~~~~~~~~~~~g~~i~l~Hg~--~~~~~~-----~~~~l~~~~~~~~~-d~vi~GHtH~~ 118 (158)
T TIGR00040 52 AKVIAVRGNNDGERDELPEEEIFEAEGIDFGLVHGD--LVYPRG-----DLLVLEYLAKELGV-DVLIFGHTHIP 118 (158)
T ss_pred CceEEEccCCCchhhhCCcceEEEECCEEEEEEeCc--ccccCC-----CHHHHHHHHhccCC-CEEEECCCCCC
Confidence 3677888888843 45454555544455555432 222221 11223222223344 48999998754
No 48
>PRK14448 acylphosphatase; Provisional
Probab=20.82 E-value=1.2e+02 Score=23.87 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=18.2
Q ss_pred ccEEEEEEEEccCcEEEEeecc
Q 021901 264 ALSLHGGYYNFVDCTFEKWTLD 285 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~d 285 (306)
++.|.||+.+..+|.|+.+-..
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~~G 48 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVVAVG 48 (90)
T ss_pred HhCCEEEEEECCCCCEEEEEEe
Confidence 3679999999999998876554
No 49
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=20.67 E-value=33 Score=26.53 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.7
Q ss_pred cEEEEEEEEccCcEEE
Q 021901 265 LSLHGGYYNFVDCTFE 280 (306)
Q Consensus 265 L~I~G~~YDi~tG~v~ 280 (306)
...|||.||+.||++.
T Consensus 59 CP~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 59 CPWHGACFNLRTGDIE 74 (95)
T ss_pred cCCCCCEEECCCCcCc
Confidence 4589999999999865
No 50
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=20.55 E-value=1e+02 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCceEEEeccCcchHHHHhh
Q 021901 167 NAALEFAVNSVKVENILVIGHSRCGGIHALM 197 (306)
Q Consensus 167 ~aSLEyAV~~L~V~~IVV~GHs~CGav~Aal 197 (306)
...|.-.+..++.+.++++|||-.|.+...+
T Consensus 89 a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~ 119 (294)
T PLN02824 89 GEQLNDFCSDVVGDPAFVICNSVGGVVGLQA 119 (294)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCHHHHHHHHH
Confidence 3344445668889999999999999877543
No 51
>PRK14441 acylphosphatase; Provisional
Probab=20.39 E-value=1.5e+02 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=18.5
Q ss_pred ccEEEEEEEEccCcEEEEeecc
Q 021901 264 ALSLHGGYYNFVDCTFEKWTLD 285 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~d 285 (306)
++.|.||+.+..+|+|+.+-..
T Consensus 30 ~lgL~G~V~N~~dG~Vei~~qG 51 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAEAEG 51 (93)
T ss_pred hcCcEEEEEECCCCEEEEEEEE
Confidence 4789999999999998876543
No 52
>PF01888 CbiD: CbiD; InterPro: IPR002748 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiD, an essential protein for cobalamin biosynthesis in both Salmonella typhimurium and Bacillus megaterium. A deletion mutant of CbiD suggests that this enzyme is involved in C-1 methylation and deacylation reactions required during the ring contraction process in the anaerobic pathway to cobalamin (similar role as CobF) []. The CbiD protein has a putative S-AdoMet binding site []. CbiD has no counterpart in the aerobic pathway.; GO: 0016740 transferase activity, 0009236 cobalamin biosynthetic process; PDB: 1SR8_A.
Probab=20.35 E-value=76 Score=30.20 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=15.8
Q ss_pred CceEEEeccCCCCCCCCCCCchhHHHHHHHHHhcCCceEEEeccC
Q 021901 144 GEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHS 188 (306)
Q Consensus 144 Gd~FVvRNaGN~V~~~d~~~~~~~aSLEyAV~~L~V~~IVV~GHs 188 (306)
.+.||. +||.+.. +|++|.. .++++|+++||-
T Consensus 221 ~~~~v~--~gnfiG~----------~L~~a~~-~g~~~vll~G~~ 252 (261)
T PF01888_consen 221 EEAIVQ--MGNFIGF----------ALEEAAE-KGFKKVLLVGHI 252 (261)
T ss_dssp -EEEE--------TT-----------HHHHTT--SSEEE-EEE-H
T ss_pred hhcEEE--ecchhHH----------HHHHHHH-cCCCEEEEeccc
Confidence 445443 6888765 6888776 489999999983
No 53
>PRK14451 acylphosphatase; Provisional
Probab=20.34 E-value=1.2e+02 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.2
Q ss_pred ccEEEEEEEEccCcEEEEeecc
Q 021901 264 ALSLHGGYYNFVDCTFEKWTLD 285 (306)
Q Consensus 264 ~L~I~G~~YDi~tG~v~~~~~d 285 (306)
++.|.||+.+..+|+|+..-..
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~qG 49 (89)
T PRK14451 28 QLMISGWARNLADGRVEVFACG 49 (89)
T ss_pred HhCCEEEEEECCCCCEEEEEEE
Confidence 3679999999999999876544
No 54
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.06 E-value=92 Score=33.60 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=11.2
Q ss_pred HHHhcCC-----ceEEEeccC
Q 021901 173 AVNSVKV-----ENILVIGHS 188 (306)
Q Consensus 173 AV~~L~V-----~~IVV~GHs 188 (306)
|...+|. +.||+|||-
T Consensus 551 aLKmmgLte~fAp~Vvl~GHg 571 (880)
T COG3002 551 ALKMMGLTEEFAPLVVLVGHG 571 (880)
T ss_pred HHHHhCchhhhCceEEEeccc
Confidence 4445554 679999995
Done!