BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021902
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QWR|A Chain A, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
pdb|1QWR|B Chain B, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
Length = 319
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 208 LRRVAVEPSDHFFLPSSTELHSQESGS--LQDERNSRSVY 245
LRR+ ++P D +++PS T LH+ G+ L+ ++NS + Y
Sbjct: 157 LRRIKIKPGDFYYVPSGT-LHALCKGALVLETQQNSDATY 195
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 91 WRALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEY 150
W + D+ P L+I ++DE P + F H+ DV+ G+ H H E
Sbjct: 253 WSVIDRLPDVTAPVLVIAGEHDEATP-KTWQPFVDHI----PDVRSHVFPGTSHCTHLE- 306
Query: 151 YPIQYRAAITGLLEK 165
P ++RA + L +
Sbjct: 307 KPEEFRAVVAQFLHQ 321
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 90 YWRALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGH 147
++ + + +P+LI+ D DE+ P + + F + V+ V ++G+ H H
Sbjct: 139 FYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQ---ISSPVEFVVMSGASHFFH 193
>pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
Length = 290
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 39/191 (20%)
Query: 6 QIIQATCEGQ-LNVDESRLIRSCVAGQIYDSSPVDFT-SDFCARFGLHPTIQK------I 57
+++QA Q L + + ++ A + S V T SD R G+ I K +
Sbjct: 118 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 177
Query: 58 PGLSKLVSWVAKGVTSG----LDGLCL-TRFEPQRAE------YWRALYNSVDLGTPFLI 106
P + V W+ + G L+G+ + F QRA+ +W + + L
Sbjct: 178 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA----- 232
Query: 107 ICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166
D+++L+P + + FA HLL G D+++V++ +GH + Q
Sbjct: 233 -GIDSEKLSPHVLRHAFATHLLNHGADLRVVQML----LGHSDLSTTQI----------Y 277
Query: 167 ASVYSQRIRQL 177
V ++R+RQL
Sbjct: 278 THVATERLRQL 288
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 90 YWRALYNSVD----LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPH 144
+W L +++D P + ++ND+ Q+ +Y+ H+ G KL L GS H
Sbjct: 185 HWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLYSLLGSSH 241
>pdb|4A8E|A Chain A, The Structure Of A Dimeric Xer Recombinase From Archaea
Length = 292
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 113 ELAPQQVIYNFARHLLALGGDVKLVK 138
EL P Q+ ++FA H+L G D+++++
Sbjct: 222 ELTPHQLRHSFATHMLERGIDIRIIQ 247
>pdb|3C9P|A Chain A, Crystal Structure Of Uncharacterized Protein Sp1917
Length = 123
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 52 PTIQKIPGLSKLVSWVAKGVTS 73
P Q+I L KLV W+AKG TS
Sbjct: 91 PLXQEIRRLDKLVDWLAKGKTS 112
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 106 IICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG--SPHIGHYEYYPIQYRAAITGLL 163
++C +L ++V ++ + +GG + G + H+ + + + A++ L
Sbjct: 98 VMCQVLTDLIDEEVKSGIKKNRILIGG----FSMGGCMAMHLAYRNHQDVAGVFALSSFL 153
Query: 164 EKAASVYSQRIRQLGEISGMEGTHDEISELICDLQNVAVNSNQSLRRVAVEPSDHFFLPS 223
KA++VY + G + + H EL+ L + A +N L+ + V H F
Sbjct: 154 NKASAVYQALQKSNGVLPELFQCHGTADELV--LHSWAEETNSMLKSLGVTTKFHSFPNV 211
Query: 224 STELHSQE 231
EL E
Sbjct: 212 YHELSKTE 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,089,562
Number of Sequences: 62578
Number of extensions: 380458
Number of successful extensions: 847
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 8
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)