BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021902
         (306 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O31646|MANA1_BACSU Mannose-6-phosphate isomerase ManA OS=Bacillus subtilis (strain
           168) GN=manA PE=3 SV=1
          Length = 315

 Score = 33.5 bits (75), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 205 NQSLRRVAVEPSDHFFLPSSTELHSQESG--SLQDERNSRSVY 245
           ++ LRRV V+P D F++PS T +H+   G  +L+ ++NS + Y
Sbjct: 150 DELLRRVKVKPGDFFYVPSGT-VHAIGKGILALETQQNSDTTY 191


>sp|O05511|MANA2_BACSU Probable mannose-6-phosphate isomerase GmuF OS=Bacillus subtilis
           (strain 168) GN=gmuF PE=1 SV=1
          Length = 315

 Score = 33.1 bits (74), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 205 NQSLRRVAVEPSDHFFLPSSTELHSQESGS--LQDERNSRSVY 245
           N  LRR+ ++P D F++PS T LH+   G+  L+ ++NS + Y
Sbjct: 150 NGLLRRIKIKPGDFFYVPSGT-LHALCKGTLVLEIQQNSDTTY 191


>sp|Q02286|PHEA_ENTAG P-protein OS=Enterobacter agglomerans GN=pheA PE=4 SV=1
          Length = 387

 Score = 31.6 bits (70), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 142 SPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGEISGMEGTHDEISELICDLQNVA 201
           S  I  + ++ I+Y  +    +EK A++ S ++  LG  +G E    ++ E   +L N  
Sbjct: 217 SQFINRFPHWKIEYTESTAAAMEKVAALNSPKVAALGSEAGGELYQLQVLER--NLANQQ 274

Query: 202 VNSNQ--SLRRVAVEPSDHFFLPSSTEL---HSQESGSLQD 237
            N  +   L R A+E SD   +P+ T L     Q++G+L D
Sbjct: 275 QNHTRFIVLARKAIEVSDQ--VPAKTTLIMATGQQAGALVD 313


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,376,249
Number of Sequences: 539616
Number of extensions: 4742616
Number of successful extensions: 10942
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10942
Number of HSP's gapped (non-prelim): 8
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)