Query 021902
Match_columns 306
No_of_seqs 155 out of 305
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05705 DUF829: Eukaryotic pr 100.0 3.4E-28 7.4E-33 219.9 11.9 145 17-163 91-240 (240)
2 KOG2521 Uncharacterized conser 99.9 8.5E-27 1.8E-31 225.7 6.5 126 101-227 225-350 (350)
3 PF00326 Peptidase_S9: Prolyl 97.6 0.00025 5.3E-09 62.5 7.3 69 100-168 143-211 (213)
4 TIGR01738 bioH putative pimelo 97.0 0.0017 3.7E-08 55.3 6.0 60 99-163 186-245 (245)
5 TIGR02427 protocat_pcaD 3-oxoa 96.6 0.0046 1E-07 52.6 6.0 60 100-164 192-251 (251)
6 PRK11460 putative hydrolase; P 96.5 0.018 3.9E-07 52.4 9.7 77 100-181 147-223 (232)
7 TIGR03611 RutD pyrimidine util 96.5 0.0068 1.5E-07 52.4 6.2 61 99-164 196-256 (257)
8 PLN02652 hydrolase; alpha/beta 96.4 0.0087 1.9E-07 59.3 6.9 68 99-168 322-389 (395)
9 PRK00175 metX homoserine O-ace 96.3 0.014 3.1E-07 56.7 8.2 68 99-167 307-375 (379)
10 PHA02857 monoglyceride lipase; 96.3 0.012 2.6E-07 53.3 6.9 65 99-166 207-273 (276)
11 PRK10749 lysophospholipase L2; 96.2 0.015 3.2E-07 55.2 7.5 67 99-165 257-328 (330)
12 PLN03087 BODYGUARD 1 domain co 96.2 0.0081 1.8E-07 61.4 6.1 63 100-166 417-479 (481)
13 PF02230 Abhydrolase_2: Phosph 96.2 0.02 4.4E-07 51.0 7.9 61 101-166 155-215 (216)
14 COG1506 DAP2 Dipeptidyl aminop 96.2 0.019 4.1E-07 59.9 8.8 74 94-167 544-617 (620)
15 PRK10566 esterase; Provisional 96.1 0.027 5.9E-07 50.2 8.3 61 101-166 186-248 (249)
16 TIGR02240 PHA_depoly_arom poly 96.1 0.014 3E-07 53.2 6.4 63 99-167 205-267 (276)
17 PLN02965 Probable pheophorbida 96.1 0.016 3.4E-07 52.3 6.6 62 100-166 192-253 (255)
18 TIGR03056 bchO_mg_che_rel puta 96.0 0.016 3.5E-07 51.3 6.1 60 100-164 219-278 (278)
19 PRK06765 homoserine O-acetyltr 96.0 0.024 5.2E-07 56.2 7.9 65 100-165 322-387 (389)
20 TIGR01392 homoserO_Ac_trn homo 95.8 0.029 6.3E-07 53.6 7.4 64 100-164 287-351 (351)
21 PLN02679 hydrolase, alpha/beta 95.8 0.037 8E-07 53.4 8.0 66 100-166 291-357 (360)
22 PLN02824 hydrolase, alpha/beta 95.7 0.029 6.2E-07 51.5 6.7 61 100-165 233-293 (294)
23 PRK03592 haloalkane dehalogena 95.6 0.036 7.8E-07 50.9 6.8 65 100-168 227-291 (295)
24 PF01738 DLH: Dienelactone hyd 95.6 0.054 1.2E-06 48.0 7.7 69 99-167 143-211 (218)
25 TIGR01250 pro_imino_pep_2 prol 95.5 0.04 8.6E-07 48.2 6.6 60 99-164 229-288 (288)
26 PLN02298 hydrolase, alpha/beta 95.4 0.039 8.4E-07 51.8 6.6 65 99-166 249-317 (330)
27 PRK07581 hypothetical protein; 95.3 0.05 1.1E-06 51.4 6.9 64 100-168 274-338 (339)
28 PRK08775 homoserine O-acetyltr 95.3 0.029 6.2E-07 53.5 5.3 65 99-167 275-340 (343)
29 TIGR03343 biphenyl_bphD 2-hydr 95.3 0.048 1E-06 49.0 6.5 61 99-164 221-281 (282)
30 PRK06489 hypothetical protein; 94.9 0.063 1.4E-06 51.6 6.5 61 100-166 291-357 (360)
31 PRK10349 carboxylesterase BioH 94.9 0.057 1.2E-06 48.3 5.8 62 99-165 194-255 (256)
32 PRK03204 haloalkane dehalogena 94.9 0.064 1.4E-06 49.7 6.2 58 101-163 227-285 (286)
33 TIGR03695 menH_SHCHC 2-succiny 94.6 0.094 2E-06 44.3 6.1 60 99-164 192-251 (251)
34 PRK11126 2-succinyl-6-hydroxy- 94.5 0.1 2.2E-06 45.8 6.3 55 100-165 187-241 (242)
35 PRK14875 acetoin dehydrogenase 94.5 0.06 1.3E-06 50.6 5.2 59 99-165 312-370 (371)
36 TIGR01607 PST-A Plasmodium sub 94.5 0.12 2.6E-06 49.5 7.2 62 101-164 270-331 (332)
37 PLN02385 hydrolase; alpha/beta 94.4 0.098 2.1E-06 49.8 6.5 65 99-166 277-345 (349)
38 PLN02578 hydrolase 94.3 0.12 2.6E-06 49.6 6.8 60 99-164 294-353 (354)
39 PF12697 Abhydrolase_6: Alpha/ 94.3 0.084 1.8E-06 43.9 5.0 54 100-158 175-228 (228)
40 PRK00870 haloalkane dehalogena 94.3 0.088 1.9E-06 48.7 5.6 64 99-165 237-300 (302)
41 PRK10673 acyl-CoA esterase; Pr 94.1 0.13 2.8E-06 45.5 6.1 62 99-165 193-254 (255)
42 PLN03084 alpha/beta hydrolase 94.1 0.16 3.6E-06 50.2 7.5 60 99-164 323-382 (383)
43 COG2267 PldB Lysophospholipase 93.9 0.17 3.6E-06 48.4 6.8 67 99-167 226-295 (298)
44 PLN02872 triacylglycerol lipas 93.7 0.18 3.8E-06 50.3 6.9 64 101-167 325-390 (395)
45 PF07859 Abhydrolase_3: alpha/ 93.7 0.097 2.1E-06 45.5 4.5 44 103-148 168-211 (211)
46 PLN02511 hydrolase 93.5 0.12 2.5E-06 50.9 5.1 75 99-177 296-376 (388)
47 PF03583 LIP: Secretory lipase 93.2 0.32 7E-06 46.2 7.5 55 101-155 219-274 (290)
48 KOG1454 Predicted hydrolase/ac 92.9 0.33 7.2E-06 47.0 7.3 60 102-166 265-324 (326)
49 PF00561 Abhydrolase_1: alpha/ 92.5 0.2 4.4E-06 42.6 4.7 57 99-160 173-229 (230)
50 TIGR01836 PHA_synth_III_C poly 92.5 0.31 6.7E-06 46.6 6.4 63 100-165 285-349 (350)
51 PLN02211 methyl indole-3-aceta 92.5 0.37 8E-06 44.7 6.7 59 101-165 211-269 (273)
52 PRK10162 acetyl esterase; Prov 92.2 0.55 1.2E-05 44.8 7.7 44 102-147 249-292 (318)
53 PLN02442 S-formylglutathione h 92.1 0.78 1.7E-05 43.0 8.4 61 100-170 216-277 (283)
54 PRK05855 short chain dehydroge 92.0 0.22 4.7E-06 49.6 4.9 62 100-167 232-293 (582)
55 PF12695 Abhydrolase_5: Alpha/ 91.7 0.28 6.2E-06 39.3 4.4 44 99-145 102-145 (145)
56 PLN02894 hydrolase, alpha/beta 91.5 0.6 1.3E-05 46.1 7.3 65 100-169 324-388 (402)
57 COG1647 Esterase/lipase [Gener 90.9 0.31 6.8E-06 45.9 4.3 65 99-165 179-243 (243)
58 PRK05077 frsA fermentation/res 90.7 0.69 1.5E-05 46.1 6.9 61 99-167 353-413 (414)
59 TIGR03100 hydr1_PEP hydrolase, 90.5 0.61 1.3E-05 43.2 5.9 64 100-164 206-273 (274)
60 COG0400 Predicted esterase [Ge 90.1 0.72 1.6E-05 42.3 5.9 61 100-166 145-205 (207)
61 TIGR02821 fghA_ester_D S-formy 89.9 0.67 1.5E-05 42.9 5.7 46 101-146 211-257 (275)
62 COG1073 Hydrolases of the alph 89.8 0.95 2.1E-05 40.0 6.4 64 102-167 233-298 (299)
63 COG0412 Dienelactone hydrolase 89.6 1.7 3.7E-05 40.2 8.1 47 99-145 156-202 (236)
64 COG0596 MhpC Predicted hydrola 89.6 1 2.2E-05 37.1 6.0 60 100-163 220-279 (282)
65 PLN02980 2-oxoglutarate decarb 88.5 0.96 2.1E-05 52.8 6.8 67 99-167 1566-1640(1655)
66 PRK11071 esterase YqiA; Provis 88.3 1.2 2.6E-05 39.4 6.0 55 100-164 135-189 (190)
67 TIGR01249 pro_imino_pep_1 prol 88.0 0.96 2.1E-05 42.2 5.4 56 101-164 248-303 (306)
68 PRK13604 luxD acyl transferase 87.1 1.1 2.3E-05 43.7 5.2 91 100-204 201-292 (307)
69 PRK10985 putative hydrolase; P 85.0 1.7 3.7E-05 41.2 5.4 62 99-164 253-318 (324)
70 PRK05371 x-prolyl-dipeptidyl a 83.8 4.9 0.00011 43.6 8.8 70 99-169 453-522 (767)
71 KOG3043 Predicted hydrolase re 82.2 2.6 5.7E-05 39.8 5.2 46 99-145 162-209 (242)
72 PRK10115 protease 2; Provision 81.3 4.6 0.0001 43.1 7.4 65 99-165 603-674 (686)
73 PF08386 Abhydrolase_4: TAP-li 81.1 4.2 9.1E-05 32.8 5.5 59 102-165 35-93 (103)
74 KOG2551 Phospholipase/carboxyh 80.6 5 0.00011 37.8 6.4 69 93-169 155-223 (230)
75 TIGR01838 PHA_synth_I poly(R)- 79.7 2.5 5.4E-05 44.0 4.6 50 100-153 414-463 (532)
76 KOG2984 Predicted hydrolase [G 79.6 2.4 5.3E-05 39.9 4.0 63 99-166 214-276 (277)
77 PF08840 BAAT_C: BAAT / Acyl-C 79.0 2.9 6.4E-05 37.8 4.4 46 100-145 114-162 (213)
78 PF05705 DUF829: Eukaryotic pr 77.6 1.2 2.5E-05 40.3 1.3 157 103-273 67-240 (240)
79 KOG4391 Predicted alpha/beta h 77.4 5.1 0.00011 38.2 5.5 67 99-169 219-285 (300)
80 KOG1455 Lysophospholipase [Lip 76.1 6.2 0.00013 38.7 5.8 65 99-165 244-311 (313)
81 COG0429 Predicted hydrolase of 75.9 4.7 0.0001 40.0 5.1 60 87-150 257-320 (345)
82 KOG2100 Dipeptidyl aminopeptid 75.4 10 0.00023 41.1 8.0 70 100-169 680-750 (755)
83 COG0657 Aes Esterase/lipase [L 74.5 5.3 0.00012 37.4 4.9 41 102-144 246-286 (312)
84 COG3243 PhaC Poly(3-hydroxyalk 73.6 3.9 8.4E-05 41.8 3.9 51 99-153 328-378 (445)
85 PRK07868 acyl-CoA synthetase; 69.8 13 0.00029 41.1 7.3 63 99-165 295-360 (994)
86 KOG1552 Predicted alpha/beta h 67.4 7.3 0.00016 37.3 4.1 64 99-167 190-253 (258)
87 PF06821 Ser_hydrolase: Serine 65.8 7.2 0.00016 34.4 3.5 42 102-151 115-156 (171)
88 TIGR01839 PHA_synth_II poly(R) 63.2 14 0.00031 38.9 5.7 50 100-153 440-489 (560)
89 KOG2382 Predicted alpha/beta h 61.5 15 0.00033 36.1 5.2 64 98-166 250-313 (315)
90 KOG1515 Arylacetamide deacetyl 61.2 23 0.00051 34.9 6.5 48 103-152 270-317 (336)
91 COG3545 Predicted esterase of 59.7 18 0.00039 33.0 5.0 56 100-164 116-177 (181)
92 TIGR01849 PHB_depoly_PhaZ poly 57.8 24 0.00051 35.8 6.0 66 100-165 336-405 (406)
93 KOG1838 Alpha/beta hydrolase [ 51.1 23 0.0005 36.0 4.7 71 99-172 320-394 (409)
94 PF11144 DUF2920: Protein of u 49.9 28 0.0006 35.4 5.0 38 102-139 294-331 (403)
95 KOG2112 Lysophospholipase [Lip 48.9 25 0.00054 32.7 4.2 59 102-165 145-203 (206)
96 PF08538 DUF1749: Protein of u 46.6 11 0.00023 37.0 1.4 31 100-130 231-262 (303)
97 PF05728 UPF0227: Uncharacteri 46.0 37 0.00079 30.5 4.7 54 100-163 133-186 (187)
98 PF09752 DUF2048: Uncharacteri 45.2 26 0.00057 34.9 3.9 58 102-164 290-347 (348)
99 COG3040 Blc Bacterial lipocali 41.5 45 0.00097 30.3 4.5 39 102-141 132-170 (174)
100 PF14417 MEDS: MEDS: MEthanoge 41.5 29 0.00063 30.7 3.3 68 128-204 6-74 (191)
101 KOG4178 Soluble epoxide hydrol 40.5 1.5E+02 0.0033 29.4 8.3 61 100-166 257-320 (322)
102 COG2021 MET2 Homoserine acetyl 39.7 78 0.0017 31.9 6.3 61 100-165 305-367 (368)
103 PF05448 AXE1: Acetyl xylan es 39.5 51 0.0011 32.0 4.9 60 98-165 259-319 (320)
104 PF09497 Med12: Transcription 37.0 11 0.00025 28.7 0.0 20 252-271 36-55 (64)
105 COG2945 Predicted hydrolase of 34.7 80 0.0017 29.5 5.1 60 98-164 146-205 (210)
106 KOG2624 Triglyceride lipase-ch 34.1 1E+02 0.0022 31.4 6.2 51 100-151 331-381 (403)
107 KOG0622 Ornithine decarboxylas 32.5 82 0.0018 32.5 5.2 43 116-162 191-233 (448)
108 PF03959 FSH1: Serine hydrolas 29.6 72 0.0016 28.5 3.9 44 95-141 155-198 (212)
109 PF14412 AHH: A nuclease famil 29.3 97 0.0021 24.8 4.3 59 110-168 17-85 (109)
110 TIGR01840 esterase_phb esteras 27.9 62 0.0013 28.5 3.2 30 101-130 167-197 (212)
111 PF08357 SEFIR: SEFIR domain; 27.5 64 0.0014 26.9 3.1 52 103-158 2-54 (150)
112 PF05321 HHA: Haemolysin expre 26.5 17 0.00036 27.3 -0.6 8 261-269 47-54 (57)
113 KOG4667 Predicted esterase [Li 26.2 74 0.0016 30.5 3.4 57 98-160 196-252 (269)
114 PRK10391 oriC-binding nucleoid 24.1 21 0.00045 27.9 -0.5 15 256-270 51-66 (71)
115 PF01676 Metalloenzyme: Metall 23.8 62 0.0014 30.0 2.5 44 120-164 129-172 (252)
116 COG4635 HemG Flavodoxin [Energ 23.7 3E+02 0.0066 25.0 6.6 71 103-174 2-81 (175)
117 PRK10945 gene expression modul 23.2 19 0.00042 28.2 -0.8 10 260-270 58-67 (72)
118 PF08212 Lipocalin_2: Lipocali 22.9 81 0.0018 26.5 2.8 36 103-139 105-140 (143)
119 TIGR01391 dnaG DNA primase, ca 22.3 3.9E+02 0.0085 26.9 8.0 89 102-199 300-393 (415)
120 KOG4409 Predicted hydrolase/ac 22.3 2E+02 0.0044 29.0 5.8 62 100-165 302-363 (365)
121 COG4757 Predicted alpha/beta h 22.2 1.8E+02 0.0038 28.3 5.1 63 100-164 215-278 (281)
122 PF06342 DUF1057: Alpha/beta h 22.1 1.4E+02 0.003 29.4 4.5 30 100-129 211-240 (297)
123 PF06500 DUF1100: Alpha/beta h 22.0 46 0.00099 34.0 1.3 105 103-220 191-300 (411)
124 PF15585 Imm46: Immunity prote 21.8 2.2E+02 0.0048 24.7 5.2 65 106-170 12-81 (129)
125 PRK10477 outer membrane lipopr 21.8 1.2E+02 0.0025 26.7 3.7 37 102-139 135-171 (177)
126 COG1654 BirA Biotin operon rep 21.7 1.1E+02 0.0023 24.2 3.1 23 116-138 32-54 (79)
127 PHA02820 phospholipase-D-like 20.7 1.5E+02 0.0032 30.1 4.7 56 107-168 245-303 (424)
128 PF01488 Shikimate_DH: Shikima 20.7 34 0.00073 28.6 0.1 12 260-271 104-115 (135)
129 COG3208 GrsT Predicted thioest 20.1 1.5E+02 0.0033 28.3 4.3 62 98-164 173-234 (244)
No 1
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=99.95 E-value=3.4e-28 Score=219.89 Aligned_cols=145 Identities=19% Similarity=0.162 Sum_probs=93.8
Q ss_pred CcccchhhhcCceEEEEeCCCCCCch--hhhhccccccccccccchhHHHHHHHHHHHhhhccccccccc---hhhHHHH
Q 021902 17 NVDESRLIRSCVAGQIYDSSPVDFTS--DFCARFGLHPTIQKIPGLSKLVSWVAKGVTSGLDGLCLTRFE---PQRAEYW 91 (306)
Q Consensus 17 n~~~yq~v~~rI~G~IfDS~Pgdft~--~~G~~~~l~pai~k~~~~~rl~~wla~~I~s~l~~l~l~~f~---~~r~~~~ 91 (306)
+.++++.+.++|+|+||||||+..+. ..++..+..|.... .........+...+.......++.... .....++
T Consensus 91 ~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (240)
T PF05705_consen 91 SRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSAALPKSSP-RWFVPLWPLLQFLLRLSIISYFIFGYPDVQEYYRRAL 169 (240)
T ss_pred hcccccccccccceeEEeCCCCccccccHHHHHHHHcCccch-hhHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44457889999999999999987654 22222111211100 000000000000010000111111111 1112233
Q ss_pred HHhhccCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHH
Q 021902 92 RALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 163 (306)
Q Consensus 92 ~tL~~~~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl 163 (306)
+.+ ...+..+|+|||||++|++|+|+|||+|+++++++|++|+.++|++|+||+|+|.||++||++|.+||
T Consensus 170 ~~~-~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 170 NDF-ANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred hhh-hcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 333 33456789999999999999999999999999999999999999999999999999999999999998
No 2
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=8.5e-27 Score=225.65 Aligned_cols=126 Identities=32% Similarity=0.444 Sum_probs=119.5
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhhhHHHhhhhccc
Q 021902 101 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGEI 180 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~~~~~~~l~~~~ 180 (306)
.+++||+||++|.|+|++++|++++..+++|+.|+.++|.+|+||+|+|.||..|++++.+|++++...+..+++.++..
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~~~~~~~~~~~~ 304 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISSYNLKNRILGIR 304 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhcccccCCccCcccee
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998888766666
Q ss_pred cCCCCccchhhhhhhhhhhhhccccccccccccCCCCcccccCcccc
Q 021902 181 SGMEGTHDEISELICDLQNVAVNSNQSLRRVAVEPSDHFFLPSSTEL 227 (306)
Q Consensus 181 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (306)
+.-+ .+|++++.+|+|.++|.|.|+++||.|..+.|||++|+|.+|
T Consensus 305 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (350)
T KOG2521|consen 305 ADSA-GDDPLTEKICSLFQVTLNLNRSSRRSPLVLDDHLEVPSSIPY 350 (350)
T ss_pred ecCC-CCchHHHHHHHHHHHHhccchhhhcccccccceeeccccCCC
Confidence 5444 899999999999999999999999999999999999999886
No 3
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=97.55 E-value=0.00025 Score=62.48 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=61.5
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHh
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAAS 168 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~ 168 (306)
...|.|++++++|+.||.+..+++++.+++.|.+++...|++..|.--...+..++...+.+|+++.+.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 567999999999999999999999999999999999999999999666667778889999999998764
No 4
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=96.98 E-value=0.0017 Score=55.26 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=50.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 163 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl 163 (306)
...+|.|+++++.|.++|.+..+...+... +++.+.++++.|..++ .+|+++.+.|.+|+
T Consensus 186 ~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fi 245 (245)
T TIGR01738 186 NISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIFAKAAHAPFL-SHAEAFCALLVAFK 245 (245)
T ss_pred cCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEeCCCCCCccc-cCHHHHHHHHHhhC
Confidence 456899999999999999887776654432 5788899999999988 58999999999884
No 5
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=96.63 E-value=0.0046 Score=52.63 Aligned_cols=60 Identities=23% Similarity=0.440 Sum_probs=50.5
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
..+|.|+++++.|.++|.+.++++.+... ..+.+.++++.|..++ .+|+++.+.+.+|++
T Consensus 192 ~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 192 IAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIPCV-EQPEAFNAALRDFLR 251 (251)
T ss_pred cCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcccc-cChHHHHHHHHHHhC
Confidence 45799999999999999988877665543 3577889999999987 679999999999973
No 6
>PRK11460 putative hydrolase; Provisional
Probab=96.55 E-value=0.018 Score=52.42 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=62.7
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhhhHHHhhhhcc
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGE 179 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~~~~~~~l~~~ 179 (306)
...|.|++++++|++||++..++..+.+++.|.+|+.+.+++..|-= ..+....+.+|+++.+..-.-...|-+.
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i-----~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 221 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAI-----DPRLMQFALDRLRYTVPKRYWDEALSGG 221 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCC-----CHHHHHHHHHHHHHHcchhhHHHHhccC
Confidence 45799999999999999999999999999999999999998888864 3566688888888877554444466666
Q ss_pred cc
Q 021902 180 IS 181 (306)
Q Consensus 180 ~~ 181 (306)
+-
T Consensus 222 ~~ 223 (232)
T PRK11460 222 KP 223 (232)
T ss_pred cC
Confidence 54
No 7
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=96.47 E-value=0.0068 Score=52.38 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=50.4
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
....|.|+++++.|.++|.+..+++.+... +++.+.+++..|.-++ .+|+++.+.|.+|++
T Consensus 196 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 196 RIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPYGGHASNV-TDPETFNRALLDFLK 256 (257)
T ss_pred ccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECCCCCCccc-cCHHHHHHHHHHHhc
Confidence 346799999999999999998877665432 4577788999999655 799999999999986
No 8
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=96.36 E-value=0.0087 Score=59.32 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=58.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHh
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAAS 168 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~ 168 (306)
....|.|+++|++|.++|.+..+++++.+.. .+++.+.|+++.|.-++-.+|+++.+.+.+|++....
T Consensus 322 ~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~--~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 322 SVTVPFMVLHGTADRVTDPLASQDLYNEAAS--RHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhcCC--CCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 4568999999999999999988888776543 3577888999999998888899999999999997543
No 9
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=96.34 E-value=0.014 Score=56.68 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=59.4
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc-CCCCCCcccccChHhHHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL-NGSPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~F-e~SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
...+|.|++.++.|.++|.+..++.++.....|..++.+.+ ++..|..++ .+|+++-++|.+||+++.
T Consensus 307 ~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~l-e~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 307 RIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFL-LDDPRYGRLVRAFLERAA 375 (379)
T ss_pred cCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHh-cCHHHHHHHHHHHHHhhh
Confidence 35689999999999999999999998888877777887766 489999876 889999999999999754
No 10
>PHA02857 monoglyceride lipase; Provisional
Probab=96.28 E-value=0.012 Score=53.30 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=54.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccC--hHhHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY--PIQYRAAITGLLEKA 166 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~h--PeeY~~aV~~Fl~~~ 166 (306)
...+|.|++.++.|.++|.+..+++++.... +++.+.+++..|.-|.-.. .++.++.+.+|+++.
T Consensus 207 ~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 207 KIKTPILILQGTNNEISDVSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred cCCCCEEEEecCCCCcCChHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 4568999999999999999988888776533 6889999999999997744 678889999999875
No 11
>PRK10749 lysophospholipase L2; Provisional
Probab=96.24 E-value=0.015 Score=55.22 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=56.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCC---ceEEEEcCCCCCCcccccC--hHhHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGG---DVKLVKLNGSPHIGHYEYY--PIQYRAAITGLLEK 165 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~---~V~~~~Fe~SpHV~H~R~h--PeeY~~aV~~Fl~~ 165 (306)
....|.|+|+++.|.+++.+..+.+++..++.|. +++.+.|+++.|.-++-.+ .++.++.+.+|+++
T Consensus 257 ~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~ 328 (330)
T PRK10749 257 DITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNR 328 (330)
T ss_pred CCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999999888877663 4678999999999887554 67788888888875
No 12
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=96.23 E-value=0.0081 Score=61.40 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=55.1
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
..+|.|+|+++.|.++|.+..+.+++... +++.+.+++..|+.++-.+|++|.+.+.+||+..
T Consensus 417 I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 417 LKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITIVVGRQKEFARELEEIWRRS 479 (481)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhcc
Confidence 56899999999999999998887755542 4788999999999999999999999999999754
No 13
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=96.21 E-value=0.02 Score=51.01 Aligned_cols=61 Identities=30% Similarity=0.349 Sum_probs=49.4
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 101 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
..|.++++++.|+++|.+..++..+.+++.|.+|+.+.|++..|-- +.+....+.+|+++.
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i-----~~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI-----SPEELRDLREFLEKH 215 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----CHHHHHHHHHHHhhh
Confidence 4699999999999999999999999999999999999999988843 355668899999875
No 14
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.20 E-value=0.019 Score=59.93 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=61.6
Q ss_pred hhccCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHH
Q 021902 94 LYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 94 L~~~~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
++......+|.|+|+|++|.-||.+.-+.+++.++.+|.+|+.+.|++..|-=-...|-.+..+.+.+|+++.+
T Consensus 544 ~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~ 617 (620)
T COG1506 544 IFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHL 617 (620)
T ss_pred hhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHh
Confidence 34445678999999999999999999999999999999999999999999975555556666666777777654
No 15
>PRK10566 esterase; Provisional
Probab=96.15 E-value=0.027 Score=50.17 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=51.6
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCC--ceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 101 GTPFLIICSDNDELAPQQVIYNFARHLLALGG--DVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~--~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
.+|.|+++++.|+++|++..+++.+.+++.|. +++.+.++++.|.- .|+ ....+.+|+++.
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~----~~~-~~~~~~~fl~~~ 248 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRI----TPE-ALDAGVAFFRQH 248 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCcc----CHH-HHHHHHHHHHhh
Confidence 47999999999999999999999999999987 47888899999862 344 568888888864
No 16
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=96.10 E-value=0.014 Score=53.19 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=50.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
...+|.|+|+++.|+++|.+..+++.+... + .+.+.+++ .|..|. .+|+++.+++.+|+++.-
T Consensus 205 ~i~~P~lii~G~~D~~v~~~~~~~l~~~~~--~--~~~~~i~~-gH~~~~-e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 205 KIQQPTLVLAGDDDPIIPLINMRLLAWRIP--N--AELHIIDD-GHLFLI-TRAEAVAPIIMKFLAEER 267 (276)
T ss_pred cCCCCEEEEEeCCCCcCCHHHHHHHHHhCC--C--CEEEEEcC-CCchhh-ccHHHHHHHHHHHHHHhh
Confidence 356799999999999999998888876553 2 34455665 898886 699999999999998643
No 17
>PLN02965 Probable pheophorbidase
Probab=96.09 E-value=0.016 Score=52.32 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=51.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
...|.|+|+++.|.++|.+..+.+++... ..+.+.++++.|.-|+ .+|++..++|.+|++..
T Consensus 192 i~vP~lvi~g~~D~~~~~~~~~~~~~~~~----~a~~~~i~~~GH~~~~-e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 192 EKVPRVYIKTAKDNLFDPVRQDVMVENWP----PAQTYVLEDSDHSAFF-SVPTTLFQYLLQAVSSL 253 (255)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHhCC----cceEEEecCCCCchhh-cCHHHHHHHHHHHHHHh
Confidence 56899999999999999976666665443 2567889999999998 89999999999998753
No 18
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=95.99 E-value=0.016 Score=51.31 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
..+|.|+|+++.|.++|.+.+++.++... +++.+.++++.|..++ .+|+++.+.|.+|++
T Consensus 219 i~~P~lii~g~~D~~vp~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 219 ITIPLHLIAGEEDKAVPPDESKRAATRVP----TATLHVVPGGGHLVHE-EQADGVVGLILQAAE 278 (278)
T ss_pred CCCCEEEEEeCCCcccCHHHHHHHHHhcc----CCeEEEECCCCCcccc-cCHHHHHHHHHHHhC
Confidence 45799999999999999988877765543 3567788888887765 479999999999974
No 19
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=95.99 E-value=0.024 Score=56.18 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=57.9
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC-CCCCcccccChHhHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG-SPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~-SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
..+|.|++.++.|.++|.+..++.++.....|-+++.+.+++ ..|..|+ .+|+++.+.|.+|+++
T Consensus 322 I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~l-e~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 322 IEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGV-FDIHLFEKKIYEFLNR 387 (389)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhh-cCHHHHHHHHHHHHcc
Confidence 568999999999999999999998888877677788888985 8999988 6999999999999975
No 20
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=95.81 E-value=0.029 Score=53.58 Aligned_cols=64 Identities=27% Similarity=0.276 Sum_probs=53.2
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEE-EcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLV-KLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~-~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
..+|.|+|.++.|.++|.+.++++++...+....|+.+ .++++.|..|+ .+|+++-++|.+|++
T Consensus 287 I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~l-e~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 287 IKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFL-VETDQVEELIRGFLR 351 (351)
T ss_pred CCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhh-cCHHHHHHHHHHHhC
Confidence 46899999999999999999999988887644444333 46789999998 689999999999974
No 21
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=95.75 E-value=0.037 Score=53.39 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=52.4
Q ss_pred CCCCEEEEecCCCCccChHH-HHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQV-IYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~d-VE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
..+|.|+|+++.|.++|.+. +.+++++..+.=-+++.+.++++.|.-|+ .+|++..+.|.+|+++.
T Consensus 291 i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~-E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 291 ISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHD-DRPDLVHEKLLPWLAQL 357 (360)
T ss_pred cCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccc-cCHHHHHHHHHHHHHhc
Confidence 46799999999999999863 33455555443345788899999999887 56999999999999863
No 22
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=95.71 E-value=0.029 Score=51.50 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=49.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
..+|.|+|+++.|.++|.+..+.+ .+.--..+.+.+++..|.-|+ .+|++..+.|.+|+++
T Consensus 233 i~~P~lvi~G~~D~~~~~~~~~~~----~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 233 VKCPVLIAWGEKDPWEPVELGRAY----ANFDAVEDFIVLPGVGHCPQD-EAPELVNPLIESFVAR 293 (294)
T ss_pred cCCCeEEEEecCCCCCChHHHHHH----HhcCCccceEEeCCCCCChhh-hCHHHHHHHHHHHHhc
Confidence 568999999999999998766553 222223577889999999998 8899999999999975
No 23
>PRK03592 haloalkane dehalogenase; Provisional
Probab=95.57 E-value=0.036 Score=50.86 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=51.7
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHh
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAAS 168 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~ 168 (306)
..+|.|+|+++.|.+++....++.+.+.-. ..+.+.++++.|.-|+ .+|++.-+++.+|++++..
T Consensus 227 i~~P~lii~G~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~~-e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 227 SDVPKLLINAEPGAILTTGAIRDWCRSWPN---QLEITVFGAGLHFAQE-DSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred CCCCeEEEeccCCcccCcHHHHHHHHHhhh---hcceeeccCcchhhhh-cCHHHHHHHHHHHHHHhcc
Confidence 468999999999999966666655544322 4677788999999996 6799999999999987644
No 24
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=95.57 E-value=0.054 Score=47.98 Aligned_cols=69 Identities=23% Similarity=0.265 Sum_probs=47.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
...+|.|++++++|++++.+.++.+.+.+++.|.+++.+.|++..|-=-.+..+..-..+-.+.|++.+
T Consensus 143 ~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~ 211 (218)
T PF01738_consen 143 KIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTL 211 (218)
T ss_dssp G--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHH
T ss_pred ccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999976666666222333444444433
No 25
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=95.51 E-value=0.04 Score=48.16 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=47.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
...+|.|+++++.|.+ +.+..+..++... .++.+.++++.|..++. +|+++.+.|.+|++
T Consensus 229 ~i~~P~lii~G~~D~~-~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 229 EIKVPTLLTVGEFDTM-TPEAAREMQELIA----GSRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred ccCCCEEEEecCCCcc-CHHHHHHHHHhcc----CCeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 3568999999999985 5566666554432 45678899999998884 89999999999974
No 26
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=95.44 E-value=0.039 Score=51.81 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccCh----HhHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYP----IQYRAAITGLLEKA 166 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hP----eeY~~aV~~Fl~~~ 166 (306)
...+|.|+++++.|.++|.+..+++++..... +.+.+.|+++.|.-++- +| +++++.+.+|+.+.
T Consensus 249 ~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e-~pd~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 249 DVSIPFIVLHGSADVVTDPDVSRALYEEAKSE--DKTIKIYDGMMHSLLFG-EPDENIEIVRRDILSWLNER 317 (330)
T ss_pred hcCCCEEEEecCCCCCCCHHHHHHHHHHhccC--CceEEEcCCcEeeeecC-CCHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999998887776533 46788898877765542 33 45777777887764
No 27
>PRK07581 hypothetical protein; Validated
Probab=95.30 E-value=0.05 Score=51.36 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=52.3
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC-CCCCcccccChHhHHHHHHHHHHHHHh
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG-SPHIGHYEYYPIQYRAAITGLLEKAAS 168 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~-SpHV~H~R~hPeeY~~aV~~Fl~~~~~ 168 (306)
..+|.|+|+++.|.++|.+..+..++... +.+.+.+++ +.|..++ ..|+++.+.|.+|+++..+
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip----~a~l~~i~~~~GH~~~~-~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIP----NAELRPIESIWGHLAGF-GQNPADIAFIDAALKELLA 338 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEeCCCCCccccc-cCcHHHHHHHHHHHHHHHh
Confidence 56899999999999999988776654442 357788898 8999977 7788999999999998654
No 28
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=95.30 E-value=0.029 Score=53.45 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=53.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC-CCCCcccccChHhHHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG-SPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~-SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
...+|.|+++++.|.++|.+..+++++... -..+.+.+++ +.|..++ .+|++..+.|.+|++++.
T Consensus 275 ~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~---p~a~l~~i~~~aGH~~~l-E~Pe~~~~~l~~FL~~~~ 340 (343)
T PRK08775 275 AIRVPTVVVAVEGDRLVPLADLVELAEGLG---PRGSLRVLRSPYGHDAFL-KETDRIDAILTTALRSTG 340 (343)
T ss_pred cCCCCeEEEEeCCCEeeCHHHHHHHHHHcC---CCCeEEEEeCCccHHHHh-cCHHHHHHHHHHHHHhcc
Confidence 456899999999999999888877665553 2467888984 8998888 589999999999998754
No 29
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=95.27 E-value=0.048 Score=49.01 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=50.8
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
...+|.|+++++.|++++.+..++.++.+. .++.+.++++.|.- +..+|++..+++.+|+.
T Consensus 221 ~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~i~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 221 EIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHVFSRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred hCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEEeCCCCcCC-cccCHHHHHHHHHHHhh
Confidence 355799999999999999887777666553 47778899999996 55899999999999985
No 30
>PRK06489 hypothetical protein; Provisional
Probab=94.91 E-value=0.063 Score=51.57 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCCCEEEEecCCCCccChHHH--HHHHHHHHHCCCceEEEEcCCC----CCCcccccChHhHHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVI--YNFARHLLALGGDVKLVKLNGS----PHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dV--E~ha~~ar~~G~~V~~~~Fe~S----pHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
..+|.|++.++.|.++|.+.. +.+++... +.+.+.++++ .|+.| .+|++|.++|.+|+++.
T Consensus 291 I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 291 IKAPVLAINSADDERNPPETGVMEAALKRVK----HGRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCCEEEEecCCCcccChhhHHHHHHHHhCc----CCeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 568999999999999998764 44443332 3578888986 99885 69999999999999865
No 31
>PRK10349 carboxylesterase BioH; Provisional
Probab=94.90 E-value=0.057 Score=48.27 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=49.7
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
...+|.|+|.++.|.++|.+..+.+.+... ..+.+.++++.|..++ .+|++..++|.+|-++
T Consensus 194 ~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~i~~~gH~~~~-e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 194 NVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFAKAAHAPFI-SHPAEFCHLLVALKQR 255 (256)
T ss_pred hcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEEeCCCCCCccc-cCHHHHHHHHHHHhcc
Confidence 356899999999999999876654444432 4577889999999988 7999999999988653
No 32
>PRK03204 haloalkane dehalogenase; Provisional
Probab=94.85 E-value=0.064 Score=49.75 Aligned_cols=58 Identities=22% Similarity=0.194 Sum_probs=46.1
Q ss_pred CCCEEEEecCCCCccChHHH-HHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHH
Q 021902 101 GTPFLIICSDNDELAPQQVI-YNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 163 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dV-E~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl 163 (306)
.+|.|+|+++.|.+++...+ +.+.+... ..+.+.++++.|.-|+ .+|++..+.+.+|+
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~~~~~i~~aGH~~~~-e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFP----DHVLVELPNAKHFIQE-DAPDRIAAAIIERF 285 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcC----CCeEEEcCCCcccccc-cCHHHHHHHHHHhc
Confidence 68999999999999876543 33333322 4678899999999888 78999999999986
No 33
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=94.60 E-value=0.094 Score=44.27 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=47.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
...+|.|++.++.|.+++ +..+.+.+..-.++.+.++++.|..++ .+|++..+.+.+|++
T Consensus 192 ~~~~P~l~i~g~~D~~~~-----~~~~~~~~~~~~~~~~~~~~~gH~~~~-e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 192 ALTIPVLYLCGEKDEKFV-----QIAKEMQKLLPNLTLVIIANAGHNIHL-ENPEAFAKILLAFLE 251 (251)
T ss_pred CCCCceEEEeeCcchHHH-----HHHHHHHhcCCCCcEEEEcCCCCCcCc-cChHHHHHHHHHHhC
Confidence 356899999999998753 234455555556788889999999888 569999999999873
No 34
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=94.51 E-value=0.1 Score=45.83 Aligned_cols=55 Identities=22% Similarity=0.380 Sum_probs=44.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
..+|.|+++++.|.++. ..++ + ...+.+.+++..|.-|+ .+|+++.+.|.+|+++
T Consensus 187 i~~P~lii~G~~D~~~~-----~~~~---~--~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 187 LTFPFYYLCGERDSKFQ-----ALAQ---Q--LALPLHVIPNAGHNAHR-ENPAAFAASLAQILRL 241 (242)
T ss_pred cCCCeEEEEeCCcchHH-----HHHH---H--hcCeEEEeCCCCCchhh-hChHHHHHHHHHHHhh
Confidence 46799999999998652 2222 1 26788899999999987 8899999999999975
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=94.50 E-value=0.06 Score=50.62 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=48.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
...+|.|+++++.|.++|++..+.. .-.++.+.+++..|..++ .+|++..+.|.+|+++
T Consensus 312 ~i~~Pvlii~g~~D~~vp~~~~~~l-------~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 312 SLAIPVLVIWGEQDRIIPAAHAQGL-------PDGVAVHVLPGAGHMPQM-EAAADVNRLLAEFLGK 370 (371)
T ss_pred cCCCCEEEEEECCCCccCHHHHhhc-------cCCCeEEEeCCCCCChhh-hCHHHHHHHHHHHhcc
Confidence 3568999999999999998765432 235778899999998765 5899999999999875
No 36
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=94.47 E-value=0.12 Score=49.54 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=53.2
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 101 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
..|.|+|.++.|.+++.+..+++++.+.. -+++.+.|+++.|.-+.-.++++..+.+.+|++
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 57999999999999999888877765543 257788899999999998889999999999885
No 37
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=94.44 E-value=0.098 Score=49.84 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=49.5
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHh----HHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQ----YRAAITGLLEKA 166 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPee----Y~~aV~~Fl~~~ 166 (306)
...+|.|+|+++.|.++|.+..+++.+.+.. -+++.+.++++.|.-+. .+|++ ..+.+.+|+++.
T Consensus 277 ~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~--~~~~l~~i~~~gH~l~~-e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 277 EVSLPLLILHGEADKVTDPSVSKFLYEKASS--SDKKLKLYEDAYHSILE-GEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred cCCCCEEEEEeCCCCccChHHHHHHHHHcCC--CCceEEEeCCCeeeccc-CCChhhHHHHHHHHHHHHHHh
Confidence 4568999999999999999988888766543 25678889999997544 56776 556677777654
No 38
>PLN02578 hydrolase
Probab=94.30 E-value=0.12 Score=49.61 Aligned_cols=60 Identities=23% Similarity=0.252 Sum_probs=46.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
...+|.|+|+++.|.++|.+..++..+... +. +.+.. ++.|+.|. .+|+++.++|.+|++
T Consensus 294 ~i~~PvLiI~G~~D~~v~~~~~~~l~~~~p--~a--~l~~i-~~GH~~~~-e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 294 KLSCPLLLLWGDLDPWVGPAKAEKIKAFYP--DT--TLVNL-QAGHCPHD-EVPEQVNKALLEWLS 353 (354)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhCC--CC--EEEEe-CCCCCccc-cCHHHHHHHHHHHHh
Confidence 356899999999999999998777655542 23 34444 57899875 699999999999986
No 39
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=94.27 E-value=0.084 Score=43.86 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=42.9
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAA 158 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~a 158 (306)
...|.|+++++.|.+++.+.++++.+.. -+++.+.++++.|..++. +|++..++
T Consensus 175 ~~~pvl~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~~-~p~~~~~a 228 (228)
T PF12697_consen 175 IKVPVLVIHGEDDPIVPPESAEELADKL----PNAELVVIPGAGHFLFLE-QPDEVAEA 228 (228)
T ss_dssp SSSEEEEEEETTSSSSHHHHHHHHHHHS----TTEEEEEETTSSSTHHHH-SHHHHHHH
T ss_pred cCCCeEEeecCCCCCCCHHHHHHHHHHC----CCCEEEEECCCCCccHHH-CHHHHhcC
Confidence 4689999999999999966666555443 368999999999998885 88886543
No 40
>PRK00870 haloalkane dehalogenase; Provisional
Probab=94.26 E-value=0.088 Score=48.66 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
...+|.|+|+++.|+++|... +++.+..... -.+..+.++++.|.-|+ .+|++..+.+.+|+++
T Consensus 237 ~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~~-e~p~~~~~~l~~fl~~ 300 (302)
T PRK00870 237 RWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHPTIKGAGHFLQE-DSGEELAEAVLEFIRA 300 (302)
T ss_pred cCCCceEEEecCCCCcccCch-HHHHhhcccc-cccceeeecCCCccchh-hChHHHHHHHHHHHhc
Confidence 456899999999999999865 6555544321 12445678999999764 8899999999999975
No 41
>PRK10673 acyl-CoA esterase; Provisional
Probab=94.12 E-value=0.13 Score=45.46 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=49.6
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
...+|.|+|+++.|++++.+..+..++.. -+++.+.+++..|.-++ .+|+++.+.+.+|+++
T Consensus 193 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~-~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 193 AWPHPALFIRGGNSPYVTEAYRDDLLAQF----PQARAHVIAGAGHWVHA-EKPDAVLRAIRRYLND 254 (255)
T ss_pred CCCCCeEEEECCCCCCCCHHHHHHHHHhC----CCcEEEEeCCCCCeeec-cCHHHHHHHHHHHHhc
Confidence 34689999999999999976666554433 35778889999997654 6799999999999975
No 42
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=94.08 E-value=0.16 Score=50.22 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
....|.|+++++.|.+++.+..+++++.. +.+.+..+++.|.-|+ .+|++..++|.+|+.
T Consensus 323 ~i~vPvLiI~G~~D~~v~~~~~~~~a~~~-----~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 323 NWKTPITVCWGLRDRWLNYDGVEDFCKSS-----QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred cCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 35679999999999999998877766642 4577889999999998 799999999999986
No 43
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=93.88 E-value=0.17 Score=48.38 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCc-eEEEEcCCCCCCcccccCh--HhHHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGD-VKLVKLNGSPHIGHYEYYP--IQYRAAITGLLEKAA 167 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~-V~~~~Fe~SpHV~H~R~hP--eeY~~aV~~Fl~~~~ 167 (306)
....|.|.+++++|.++++ ++...+-.+..|.. ++.+.+++.-|=-|.-.+. +++++.+..|+.+..
T Consensus 226 ~~~~PvLll~g~~D~vv~~--~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 226 AIALPVLLLQGGDDRVVDN--VEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred cccCCEEEEecCCCccccC--cHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 4567999999999999997 55666666666665 7999999999999999999 999999999998754
No 44
>PLN02872 triacylglycerol lipase
Probab=93.71 E-value=0.18 Score=50.31 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCccc--ccChHhHHHHHHHHHHHHH
Q 021902 101 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHY--EYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~--R~hPeeY~~aV~~Fl~~~~ 167 (306)
..|.+.+||+.|.+++.++++..++++.. .++.+.+++..|..++ ...|++-.+.|.+|+++..
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELPS---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCCC---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 57999999999999999999988877643 3567788888887443 4668888899999998644
No 45
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=93.68 E-value=0.097 Score=45.50 Aligned_cols=44 Identities=36% Similarity=0.428 Sum_probs=38.4
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCccc
Q 021902 103 PFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHY 148 (306)
Q Consensus 103 PrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~ 148 (306)
|.++++++.|.++ .+.+.+++.+++.|.+|+.+.+++.+|+=+|
T Consensus 168 p~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~~ 211 (211)
T PF07859_consen 168 PTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFFM 211 (211)
T ss_dssp EEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGGG
T ss_pred Ceeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEeeC
Confidence 8888999999887 4788999999999999999999999997554
No 46
>PLN02511 hydrolase
Probab=93.48 E-value=0.12 Score=50.85 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHh------HHHHHHHHHHHHHhhhHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQ------YRAAITGLLEKAASVYSQ 172 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPee------Y~~aV~~Fl~~~~~~~~~ 172 (306)
....|.|+|++++|+++|.+.+.... .+..-.++.+..+++.|++++-. |+. +.+.+.+|++........
T Consensus 296 ~I~vPtLiI~g~dDpi~p~~~~~~~~---~~~~p~~~l~~~~~gGH~~~~E~-p~~~~~~~w~~~~i~~Fl~~~~~~~~~ 371 (388)
T PLN02511 296 HVRVPLLCIQAANDPIAPARGIPRED---IKANPNCLLIVTPSGGHLGWVAG-PEAPFGAPWTDPVVMEFLEALEEGKSS 371 (388)
T ss_pred cCCCCeEEEEcCCCCcCCcccCcHhH---HhcCCCEEEEECCCcceeccccC-CCCCCCCccHHHHHHHHHHHHHHhccc
Confidence 46689999999999999987553211 12234688899999999999854 554 467889999876655433
Q ss_pred Hhhhh
Q 021902 173 RIRQL 177 (306)
Q Consensus 173 ~~~l~ 177 (306)
..+.|
T Consensus 372 ~~~~~ 376 (388)
T PLN02511 372 TPAFN 376 (388)
T ss_pred ccccc
Confidence 33443
No 47
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=93.17 E-value=0.32 Score=46.24 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=48.7
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCC-CceEEEEcCCCCCCcccccChHhH
Q 021902 101 GTPFLIICSDNDELAPQQVIYNFARHLLALG-GDVKLVKLNGSPHIGHYEYYPIQY 155 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G-~~V~~~~Fe~SpHV~H~R~hPeeY 155 (306)
..|.++.+|..|++||+...++.++++.++| .+|+.+......|.+-+...-..-
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~~~~~a 274 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAFASAPDA 274 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhhcCcHHH
Confidence 4799999999999999999999999999999 799999999999988765554433
No 48
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=92.94 E-value=0.33 Score=47.04 Aligned_cols=60 Identities=25% Similarity=0.511 Sum_probs=51.8
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
+|.|++.++.|+++|.+..+++.++. -.++.+.-++..|+-|+ .-|+++-+.+..||...
T Consensus 265 ~pvlii~G~~D~~~p~~~~~~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 265 CPVLIIWGDKDQIVPLELAEELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARL 324 (326)
T ss_pred CceEEEEcCcCCccCHHHHHHHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHh
Confidence 79999999999999988555544443 56888999999999999 99999999999999865
No 49
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=92.55 E-value=0.2 Score=42.62 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=45.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAIT 160 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~ 160 (306)
....|.|+++++.|.++|++.++.+++... ..+.+.++++.|..++ .+|++..+.|.
T Consensus 173 ~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~GH~~~~-~~~~~~~~~i~ 229 (230)
T PF00561_consen 173 NIKVPTLIIWGEDDPLVPPESSEQLAKLIP----NSQLVLIEGSGHFAFL-EGPDEFNEIII 229 (230)
T ss_dssp TTTSEEEEEEETTCSSSHHHHHHHHHHHST----TEEEEEETTCCSTHHH-HSHHHHHHHHH
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CCEEEECCCCChHHHh-cCHHhhhhhhc
Confidence 467899999999999999999888544443 3889999999999854 56777766654
No 50
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=92.52 E-value=0.31 Score=46.64 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=50.3
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccC--hHhHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY--PIQYRAAITGLLEK 165 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~h--PeeY~~aV~~Fl~~ 165 (306)
..+|.|+++++.|.++|++.++...+.... -+++.+.++ +.|++.+-.- +++=|.++.+|+.+
T Consensus 285 i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 285 IKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 468999999999999999998887776532 356666676 7999988765 58888899998864
No 51
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=92.46 E-value=0.37 Score=44.72 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 101 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
..|.|||+++.|.++|.+..+.+++... |. +.+..+ +.|..++ .+|++-.+.|.++...
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~--~~--~~~~l~-~gH~p~l-s~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWP--PS--QVYELE-SDHSPFF-STPFLLFGLLIKAAAS 269 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCC--cc--EEEEEC-CCCCccc-cCHHHHHHHHHHHHHH
Confidence 4699999999999999998888776643 33 445555 7898888 8999998888877554
No 52
>PRK10162 acetyl esterase; Provisional
Probab=92.23 E-value=0.55 Score=44.77 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=40.2
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcc
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGH 147 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H 147 (306)
.|.++++++.|++.+ +.+.+++.+++.|.+|+.+.|++..|.=.
T Consensus 249 Pp~~i~~g~~D~L~d--e~~~~~~~L~~aGv~v~~~~~~g~~H~f~ 292 (318)
T PRK10162 249 PPCFIAGAEFDPLLD--DSRLLYQTLAAHQQPCEFKLYPGTLHAFL 292 (318)
T ss_pred CCeEEEecCCCcCcC--hHHHHHHHHHHcCCCEEEEEECCCceehh
Confidence 489999999999985 78999999999999999999999999754
No 53
>PLN02442 S-formylglutathione hydrolase
Probab=92.08 E-value=0.78 Score=42.99 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=50.6
Q ss_pred CCCCEEEEecCCCCccChH-HHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhhh
Q 021902 100 LGTPFLIICSDNDELAPQQ-VIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVY 170 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~-dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~~ 170 (306)
...|.|+++++.|++++.. ..+.+.+.+++.|.+++.+.+++..|- |..+..|+++.+.-+
T Consensus 216 ~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~----------~~~~~~~i~~~~~~~ 277 (283)
T PLN02442 216 VSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHS----------YFFIATFIDDHINHH 277 (283)
T ss_pred cCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCcc----------HHHHHHHHHHHHHHH
Confidence 4579999999999999974 478899999999999999999999996 447777777666443
No 54
>PRK05855 short chain dehydrogenase; Validated
Probab=92.01 E-value=0.22 Score=49.65 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=49.0
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
..+|.|+|+++.|+++|.+..+.+.+... ..+.+.++ +.|..|+ .+|+++.++|.+|+.+..
T Consensus 232 ~~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~-e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 232 TDVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPM-SHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred ccCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchh-hChhHHHHHHHHHHHhcc
Confidence 56899999999999999887776654332 24556665 5799985 689999999999999753
No 55
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=91.67 E-value=0.28 Score=39.35 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=36.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCC
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHI 145 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV 145 (306)
....|.++++++.|++++.+.++++.+.++ .+++...++++.|.
T Consensus 102 ~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 102 KIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp TTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred ccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 345699999999999999998888887776 67899999999994
No 56
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=91.54 E-value=0.6 Score=46.14 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=49.3
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhh
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 169 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~ 169 (306)
...|.|+||++.|.+++ ...++.. +..+..++.+.++++.|..|+ .+|+++-++|.+|++..+..
T Consensus 324 I~vP~liI~G~~D~i~~-~~~~~~~---~~~~~~~~~~~i~~aGH~~~~-E~P~~f~~~l~~~~~~~~~~ 388 (402)
T PLN02894 324 WKVPTTFIYGRHDWMNY-EGAVEAR---KRMKVPCEIIRVPQGGHFVFL-DNPSGFHSAVLYACRKYLSP 388 (402)
T ss_pred CCCCEEEEEeCCCCCCc-HHHHHHH---HHcCCCCcEEEeCCCCCeeec-cCHHHHHHHHHHHHHHhccC
Confidence 46899999999998876 4444433 333456888999999997665 48999999999998865544
No 57
>COG1647 Esterase/lipase [General function prediction only]
Probab=90.92 E-value=0.31 Score=45.87 Aligned_cols=65 Identities=25% Similarity=0.299 Sum_probs=57.6
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
....|.+.+-++.|++||.+..+...++..+- +.+...|++|.||=-.-...|.-.++|..||++
T Consensus 179 ~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 179 KIYSPTLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred hcccchhheecccCCCCCHHHHHHHHHhccCC--cceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 35679999999999999999999998888763 788999999999998888899999999999873
No 58
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=90.69 E-value=0.69 Score=46.10 Aligned_cols=61 Identities=23% Similarity=0.145 Sum_probs=48.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
...+|.|+++++.|+++|.++.+.+++.. -+.+.+.+++++ +-..|++....+.+|+++.+
T Consensus 353 ~i~~PvLiI~G~~D~ivP~~~a~~l~~~~----~~~~l~~i~~~~----~~e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 353 RCPTPMLSGYWKNDPFSPEEDSRLIASSS----ADGKLLEIPFKP----VYRNFDKALQEISDWLEDRL 413 (414)
T ss_pred CCCCcEEEEecCCCCCCCHHHHHHHHHhC----CCCeEEEccCCC----ccCCHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999665443 245677888874 44588999999999998754
No 59
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=90.46 E-value=0.61 Score=43.21 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=49.3
Q ss_pred CCCCEEEEecCCCCccChHHHHHH--HHHHHH-CC-CceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNF--ARHLLA-LG-GDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~h--a~~ar~-~G-~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
...|.|++||..|...+ +..+.+ .+.+++ .+ -.|+.+.++++.|+-+....+++.-+.|.+||+
T Consensus 206 ~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 206 FQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred cCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 35799999999999863 222221 144444 34 579999999999999999999999999999985
No 60
>COG0400 Predicted esterase [General function prediction only]
Probab=90.12 E-value=0.72 Score=42.34 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=49.4
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
...|.|.++++.|++||...-++..+..++.|.+|+.+.++ ..| - -.++++ +++.+||.+.
T Consensus 145 ~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH---~-i~~e~~-~~~~~wl~~~ 205 (207)
T COG0400 145 AGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGH---E-IPPEEL-EAARSWLANT 205 (207)
T ss_pred CCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCC---c-CCHHHH-HHHHHHHHhc
Confidence 45799999999999999999999999999999999999988 444 2 234444 6667777654
No 61
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=89.94 E-value=0.67 Score=42.94 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=40.4
Q ss_pred CCCEEEEecCCCCccCh-HHHHHHHHHHHHCCCceEEEEcCCCCCCc
Q 021902 101 GTPFLIICSDNDELAPQ-QVIYNFARHLLALGGDVKLVKLNGSPHIG 146 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~-~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~ 146 (306)
..|.++.+++.|+++|. ...+.+.+.+++.|.+|+...+++..|.=
T Consensus 211 ~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f 257 (275)
T TIGR02821 211 HSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSY 257 (275)
T ss_pred CCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccc
Confidence 45777779999999998 57888999999999999999999999973
No 62
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=89.80 E-value=0.95 Score=40.02 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=54.1
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChH--hHHHHHHHHHHHHH
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPI--QYRAAITGLLEKAA 167 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPe--eY~~aV~~Fl~~~~ 167 (306)
.|-|++.+..|.+||....++....++.. ..+....++..|.-=....+. +|+..+.+|+.+.+
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999988876 677777888887766655664 99999999998754
No 63
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.62 E-value=1.7 Score=40.19 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=43.4
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCC
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHI 145 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV 145 (306)
...+|.|.+|++.|..+|.+.++.+.++.++.|.+++.+.|.+..|.
T Consensus 156 ~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~ 202 (236)
T COG0412 156 KIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHG 202 (236)
T ss_pred cccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccc
Confidence 45689999999999999999999999999999999999999996664
No 64
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=89.56 E-value=1 Score=37.12 Aligned_cols=60 Identities=32% Similarity=0.546 Sum_probs=43.0
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 163 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl 163 (306)
...|.|++++..|.+.|....+...+.... ..+.+.++++.|..|+.. |+.+.+.+.+++
T Consensus 220 ~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~~~-p~~~~~~i~~~~ 279 (282)
T COG0596 220 ITVPTLIIHGEDDPVVPAELARRLAAALPN---DARLVVIPGAGHFPHLEA-PEAFAAALLAFL 279 (282)
T ss_pred CCCCeEEEecCCCCcCCHHHHHHHHhhCCC---CceEEEeCCCCCcchhhc-HHHHHHHHHHHH
Confidence 347999999999977776653333222222 678888999999998754 558888877744
No 65
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=88.53 E-value=0.96 Score=52.83 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=50.7
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHC-------C-CceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLAL-------G-GDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~-------G-~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
...+|.|+|+++.|.+++ +..+++.+...+. + -.++.+.++++.|..|+ .+|+++.++|.+|+++..
T Consensus 1566 ~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~l-E~Pe~f~~~I~~FL~~~~ 1640 (1655)
T PLN02980 1566 QCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHL-ENPLPVIRALRKFLTRLH 1640 (1655)
T ss_pred hCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchHH-HCHHHHHHHHHHHHHhcc
Confidence 356799999999999886 4444444433221 1 12688999999999987 789999999999999744
No 66
>PRK11071 esterase YqiA; Provisional
Probab=88.32 E-value=1.2 Score=39.36 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=43.1
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
...|.+.+.+++|++||++.-.+..+.+ +....+++-|. -.+.++|+..+.+|++
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~---f~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHA---FVGFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcc---hhhHHHhHHHHHHHhc
Confidence 4567788999999999999999888843 23355666554 4777999999999975
No 67
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=88.03 E-value=0.96 Score=42.18 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=40.9
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 101 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 101 ~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
..|.|++.++.|.++|.+..+++++... +.+.+.++++.|. -.+|+.. ++|.+|++
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~---~~~~~~~-~~i~~~~~ 303 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHS---AFDPNNL-AALVHALE 303 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCC---CCChHHH-HHHHHHHH
Confidence 3699999999999999998887776643 3566677766655 4577777 55555554
No 68
>PRK13604 luxD acyl transferase; Provisional
Probab=87.08 E-value=1.1 Score=43.71 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhhhHHHhhhhcc
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGE 179 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~~~~~~~l~~~ 179 (306)
...|.|+|++++|++||.+.++++.+.+++ .+.+.+.++++-|.=+ . =.-.+.+|.+..... .++|+..
T Consensus 201 l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~Ga~H~l~--~----~~~~~~~~~~~~~~~---~~~~~~~ 269 (307)
T PRK13604 201 LDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIGSSHDLG--E----NLVVLRNFYQSVTKA---AIALDNG 269 (307)
T ss_pred cCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCCCccccC--c----chHHHHHHHHHHHHH---HheecCC
Confidence 447999999999999999999999998754 5788999999999643 2 234567777765444 3456655
Q ss_pred ccCCCCccchhhhh-hhhhhhhhccc
Q 021902 180 ISGMEGTHDEISEL-ICDLQNVAVNS 204 (306)
Q Consensus 180 ~~~~~g~~~~~~~~-~~~~~~~~~~~ 204 (306)
..++ .++|.|| +-+|--+++|-
T Consensus 270 ~~~~---~~~~~~~~~~~~~~~~~~~ 292 (307)
T PRK13604 270 SLDL---DVDIIEPSFEDLTSATVKE 292 (307)
T ss_pred cccc---cccccCCCHHHHHHHHHHH
Confidence 5543 4566655 45555555543
No 69
>PRK10985 putative hydrolase; Provisional
Probab=84.98 E-value=1.7 Score=41.18 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccC--hHhHH--HHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY--PIQYR--AAITGLLE 164 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~h--PeeY~--~aV~~Fl~ 164 (306)
....|.|+|.++.|++++.+.++...+ .--+++.+.+++..|++++... +.++| +.+.+|++
T Consensus 253 ~i~~P~lii~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~ 318 (324)
T PRK10985 253 QIRKPTLIIHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLT 318 (324)
T ss_pred CCCCCEEEEecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHH
Confidence 356799999999999999887766432 2235788899999999999753 23344 33556654
No 70
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=83.80 E-value=4.9 Score=43.61 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=56.8
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhh
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 169 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~ 169 (306)
...+|.|++.+..|..++.+...+..+.++++|.+++....+ ..|+.-....+.+|.+.+..|+...+..
T Consensus 453 kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~~LkG 522 (767)
T PRK05371 453 KIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTHKLLG 522 (767)
T ss_pred CCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHhcccc
Confidence 567899999999999999999999999999999988886654 5686555555788888888888765543
No 71
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=82.17 E-value=2.6 Score=39.80 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=36.7
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCce--EEEEcCCCCCC
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDV--KLVKLNGSPHI 145 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V--~~~~Fe~SpHV 145 (306)
+..+|.|||+++.|+++|.++|.+.-+..++. -.| +.+.|.+-.|-
T Consensus 162 ~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~-~~~~~~v~~f~g~~HG 209 (242)
T KOG3043|consen 162 NVKAPILFLFAELDEDVPPKDVKAWEEKLKEN-PAVGSQVKTFSGVGHG 209 (242)
T ss_pred cCCCCEEEEeecccccCCHHHHHHHHHHHhcC-cccceeEEEcCCccch
Confidence 56799999999999999999999887777654 233 46678887773
No 72
>PRK10115 protease 2; Provisional
Probab=81.31 E-value=4.6 Score=43.10 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=48.7
Q ss_pred CCCCCEE-EEecCCCCccChHHHHHHHHHHHHCCCceEEEEc---CCCCCCcccccChHhHHHHH---HHHHHH
Q 021902 99 DLGTPFL-IICSDNDELAPQQVIYNFARHLLALGGDVKLVKL---NGSPHIGHYEYYPIQYRAAI---TGLLEK 165 (306)
Q Consensus 99 ~~~aPrL-YLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~F---e~SpHV~H~R~hPeeY~~aV---~~Fl~~ 165 (306)
....|.| ++.|.+|+-||+..-+++++++|++|.+++.+.+ .++.|- ......++++.. ..|+-+
T Consensus 603 ~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg--~~~~r~~~~~~~A~~~aFl~~ 674 (686)
T PRK10115 603 AQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHG--GKSGRFKSYEGVAMEYAFLIA 674 (686)
T ss_pred ccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCC--CCcCHHHHHHHHHHHHHHHHH
Confidence 4567955 5599999999999999999999999999999999 666665 334455555443 444443
No 73
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=81.07 E-value=4.2 Score=32.77 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
.|.|+|=++.|+++|++-.++.++.+.. -..+.+++..|..+....+.-. ++|.+||..
T Consensus 35 ~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~~~s~C~~-~~v~~yl~~ 93 (103)
T PF08386_consen 35 PPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYAGGSPCVD-KAVDDYLLD 93 (103)
T ss_pred CCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceecCCChHHH-HHHHHHHHc
Confidence 6999999999999999998888877653 4788999999999986666663 677777764
No 74
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=80.63 E-value=5 Score=37.79 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=53.9
Q ss_pred HhhccCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhh
Q 021902 93 ALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 169 (306)
Q Consensus 93 tL~~~~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~ 169 (306)
..+...++.+|.|-+|++.|.++|....+.+++..++. .+..... ||+-=....|.+.+.+|+.....-
T Consensus 155 ~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a-----~vl~Hpg---gH~VP~~~~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 155 ESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA-----TVLEHPG---GHIVPNKAKYKEKIADFIQSFLQE 223 (230)
T ss_pred hhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC-----eEEecCC---CccCCCchHHHHHHHHHHHHHHHh
Confidence 33444578899999999999999999999999998764 3444443 577777789999999998865544
No 75
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=79.66 E-value=2.5 Score=44.04 Aligned_cols=50 Identities=34% Similarity=0.392 Sum_probs=40.5
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPI 153 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPe 153 (306)
..+|.|++.++.|.++|++.++...+. .+ ..+...++++.|+.|+-.-|.
T Consensus 414 I~vPvLvV~G~~D~IvP~~sa~~l~~~---i~-~~~~~vL~~sGHi~~ienPp~ 463 (532)
T TIGR01838 414 VKVPVYIIATREDHIAPWQSAYRGAAL---LG-GPKTFVLGESGHIAGVVNPPS 463 (532)
T ss_pred CCCCEEEEeeCCCCcCCHHHHHHHHHH---CC-CCEEEEECCCCCchHhhCCCC
Confidence 468999999999999999988876544 34 356678999999999877664
No 76
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=79.64 E-value=2.4 Score=39.94 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=50.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
.+.+|.|++.++.|++|+-..|. ++...++ + -+.+.+....|==|+| +++++-+.|.+|+++.
T Consensus 214 ~vkcPtli~hG~kDp~~~~~hv~-fi~~~~~-~--a~~~~~peGkHn~hLr-ya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 214 QVKCPTLIMHGGKDPFCGDPHVC-FIPVLKS-L--AKVEIHPEGKHNFHLR-YAKEFNKLVLDFLKST 276 (277)
T ss_pred cccCCeeEeeCCcCCCCCCCCcc-chhhhcc-c--ceEEEccCCCcceeee-chHHHHHHHHHHHhcc
Confidence 36689999999999999977554 3444433 2 4567899999999987 7999999999999863
No 77
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=78.96 E-value=2.9 Score=37.78 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=30.4
Q ss_pred CCCCEEEEecCCCCccChHHHHHHH-HHHHHCCCc--eEEEEcCCCCCC
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFA-RHLLALGGD--VKLVKLNGSPHI 145 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha-~~ar~~G~~--V~~~~Fe~SpHV 145 (306)
..+|.|++.|++|.+.|.....+.+ +++++.|.+ ++.+.+++..|.
T Consensus 114 i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 114 IKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp --SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred cCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 5689999999999999988887765 456666765 788888776665
No 78
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=77.59 E-value=1.2 Score=40.35 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=94.4
Q ss_pred CEEEEecCCC-CccChHHHHHHHHHHHHCC--Cc-eEEEEcCCCCCCcccccChHhHHHHHHHHHH-------HHHhhhH
Q 021902 103 PFLIICSDND-ELAPQQVIYNFARHLLALG--GD-VKLVKLNGSPHIGHYEYYPIQYRAAITGLLE-------KAASVYS 171 (306)
Q Consensus 103 PrLYLYSkaD-~Lvp~~dVE~ha~~ar~~G--~~-V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~-------~~~~~~~ 171 (306)
+.+++.+=.. -..-+..+.+..+...+.+ .+ +....|+.+|+..++ ...-+++.+...... .......
T Consensus 67 ~~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (240)
T PF05705_consen 67 PPILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTY-SSSARAFSAALPKSSPRWFVPLWPLLQFL 145 (240)
T ss_pred CCEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCcccc-ccHHHHHHHHcCccchhhHHHHHHHHHHH
Confidence 4677766554 3333444444333333212 23 889999999999999 666777766533221 1111111
Q ss_pred HHhhhhccccCCCCccchhhhhhhhhhhhhccccccccccccCC--CCcccccCccccc--cCCCCCcccccccCcccCC
Q 021902 172 QRIRQLGEISGMEGTHDEISELICDLQNVAVNSNQSLRRVAVEP--SDHFFLPSSTELH--SQESGSLQDERNSRSVYLP 247 (306)
Q Consensus 172 ~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 247 (306)
... .-+..-++..++.....++.++.....| .-+.|+-|..+-- .++++...+|+|+.-..+-
T Consensus 146 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~ 212 (240)
T PF05705_consen 146 LRL-------------SIISYFIFGYPDVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVR 212 (240)
T ss_pred HHH-------------HHHHHHHhcCCcHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEE
Confidence 011 1122223334444444444555555555 4488999988866 7888888888777443333
Q ss_pred --CCCCCccchhhhhhhcccccCCCcCc
Q 021902 248 --TPSISAHSVLGEFLFDVCVPKNVEGW 273 (306)
Q Consensus 248 --~~~~~~~~~~~~~l~~~~~pk~~e~w 273 (306)
.=.-+||-...+.-.|.|+.+..|.|
T Consensus 213 ~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 213 AEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred EecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 23448999999999999999998887
No 79
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=77.44 E-value=5.1 Score=38.22 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=51.4
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhh
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 169 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~ 169 (306)
..+.|.|||=+.+|++||+....+..+..-+. ..+..-|++..|-.---. +-||+++.+|+.+....
T Consensus 219 ~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 219 QCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVKS 285 (300)
T ss_pred cccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceEEe--ccHHHHHHHHHHHhccC
Confidence 35579999999999999999887777665332 345667888888655444 57999999999976653
No 80
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=76.10 E-value=6.2 Score=38.74 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=52.6
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCccccc---ChHhHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEY---YPIQYRAAITGLLEK 165 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~---hPeeY~~aV~~Fl~~ 165 (306)
.+..|-|++++++|.+++.+..+++.+.|.++ |.+.+.+++--|.=|.-. .-+.+.+.+.+.|++
T Consensus 244 ~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~ 311 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTDPKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDE 311 (313)
T ss_pred cccccEEEEecCCCcccCcHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHh
Confidence 35569999999999999999999999999886 899999999999988633 334555666665543
No 81
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=75.95 E-value=4.7 Score=40.00 Aligned_cols=60 Identities=27% Similarity=0.420 Sum_probs=47.2
Q ss_pred hHHHHHHhhcc----CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCccccc
Q 021902 87 RAEYWRALYNS----VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEY 150 (306)
Q Consensus 87 r~~~~~tL~~~----~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~ 150 (306)
..+||++- ++ .....|.|+||+++|++++.++|.+.... .--.|..+..+...|||-+-.
T Consensus 257 a~dYYr~a-Ss~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~ 320 (345)
T COG0429 257 AEDYYRQA-SSLPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGG 320 (345)
T ss_pred HHHHHHhc-cccccccccccceEEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccC
Confidence 35677642 11 24668999999999999999998887655 445799999999999999883
No 82
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=75.42 E-value=10 Score=41.12 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=56.0
Q ss_pred CCCCE-EEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhh
Q 021902 100 LGTPF-LIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 169 (306)
Q Consensus 100 ~~aPr-LYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~ 169 (306)
...|. |++.+++|+-|+.+.--.+++.++.+|++.+...|+++.|-==.+.--..+...+..|+..|...
T Consensus 680 ~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~~ 750 (755)
T KOG2100|consen 680 IKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFGS 750 (755)
T ss_pred hccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcCc
Confidence 44577 99999999999999999999999999999999999999985433333255566777888766544
No 83
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=74.47 E-value=5.3 Score=37.39 Aligned_cols=41 Identities=32% Similarity=0.294 Sum_probs=39.1
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCC
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPH 144 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpH 144 (306)
.|.+.+.++.|.+.+ +.+.+++.+++.|..|+...|++..|
T Consensus 246 PP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~~~g~~H 286 (312)
T COG0657 246 PPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVYPGMIH 286 (312)
T ss_pred CCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEEeCCcce
Confidence 489999999999999 89999999999999999999999999
No 84
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=73.63 E-value=3.9 Score=41.81 Aligned_cols=51 Identities=33% Similarity=0.463 Sum_probs=42.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPI 153 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPe 153 (306)
...+|.+.+++++|.|+||+.|-.-+. -.|.+|+.+.. +|.|.+-+-.||.
T Consensus 328 ~It~pvy~~a~~~DhI~P~~Sv~~g~~---l~~g~~~f~l~-~sGHIa~vVN~p~ 378 (445)
T COG3243 328 DITCPVYNLAAEEDHIAPWSSVYLGAR---LLGGEVTFVLS-RSGHIAGVVNPPG 378 (445)
T ss_pred hcccceEEEeecccccCCHHHHHHHHH---hcCCceEEEEe-cCceEEEEeCCcc
Confidence 356899999999999999998876554 44558888777 6999999999885
No 85
>PRK07868 acyl-CoA synthetase; Validated
Probab=69.82 E-value=13 Score=41.12 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=50.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEE-EEcCCCCCCccccc--ChHhHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKL-VKLNGSPHIGHYEY--YPIQYRAAITGLLEK 165 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~-~~Fe~SpHV~H~R~--hPeeY~~aV~~Fl~~ 165 (306)
...+|.|+++++.|.++|.+.++...+... ..+. +.+++..|.+++-. -|++-|-.+.++|++
T Consensus 295 ~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~----~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~ 360 (994)
T PRK07868 295 DITCPVLAFVGEVDDIGQPASVRGIRRAAP----NAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKW 360 (994)
T ss_pred hCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHH
Confidence 345799999999999999999988866542 2333 56778888888865 489999999999995
No 86
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=67.38 E-value=7.3 Score=37.28 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=50.8
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 167 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~ 167 (306)
...+|.|++.+.+|++||+..=.+..+.++++ ++-..-.+..|+.-.+ +.+|...+.+|.....
T Consensus 190 ~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~~--~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 190 KITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIEL--YPEYIEHLRRFISSVL 253 (258)
T ss_pred eccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCccccc--CHHHHHHHHHHHHHhc
Confidence 35689999999999999999988888888874 5555566788877654 4678888888887543
No 87
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=65.78 E-value=7.2 Score=34.36 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=29.5
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccC
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY 151 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~h 151 (306)
.|.+.+.|++|+.+|++.-+++++.|.. +.+ ..++.||+...
T Consensus 115 ~~~~viaS~nDp~vp~~~a~~~A~~l~a-----~~~---~~~~~GHf~~~ 156 (171)
T PF06821_consen 115 FPSIVIASDNDPYVPFERAQRLAQRLGA-----ELI---ILGGGGHFNAA 156 (171)
T ss_dssp CCEEEEEETTBSSS-HHHHHHHHHHHT------EEE---EETS-TTSSGG
T ss_pred CCeEEEEcCCCCccCHHHHHHHHHHcCC-----CeE---ECCCCCCcccc
Confidence 4779999999999999988888888754 233 34667776543
No 88
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=63.24 E-value=14 Score=38.92 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=40.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPI 153 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPe 153 (306)
+.+|.+.+.++.|.|+||+.+...++.. |-+++.+.. .|.|++-+-.-|.
T Consensus 440 I~~Pvl~va~~~DHIvPw~s~~~~~~l~---gs~~~fvl~-~gGHIggivnpP~ 489 (560)
T TIGR01839 440 VKCDSFSVAGTNDHITPWDAVYRSALLL---GGKRRFVLS-NSGHIQSILNPPG 489 (560)
T ss_pred CCCCeEEEecCcCCcCCHHHHHHHHHHc---CCCeEEEec-CCCccccccCCCC
Confidence 5589999999999999999998886644 447777766 6889988776664
No 89
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=61.54 E-value=15 Score=36.12 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=51.8
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHH
Q 021902 98 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 166 (306)
Q Consensus 98 ~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~ 166 (306)
.+...|.||+....+.-++-+....+.+-... |+.+.++++.|.=|+ ..|++....|.+|++..
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~----~e~~~ld~aGHwVh~-E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPN----VEVHELDEAGHWVHL-EKPEEFIESISEFLEEP 313 (315)
T ss_pred cccccceeEEecCCCCCcChhHHHHHHHhccc----hheeecccCCceeec-CCHHHHHHHHHHHhccc
Confidence 45567999999999999997655555444433 888899999999997 57999999999999854
No 90
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=61.25 E-value=23 Score=34.91 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=42.3
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccCh
Q 021902 103 PFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYP 152 (306)
Q Consensus 103 PrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hP 152 (306)
|.|++-.+.|.|.+ +-...++.+++.|++|+...+++..|+.|....-
T Consensus 270 ~tlv~~ag~D~L~D--~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~ 317 (336)
T KOG1515|consen 270 PTLVVVAGYDVLRD--EGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPS 317 (336)
T ss_pred ceEEEEeCchhhhh--hhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCc
Confidence 68999999999985 4567789999999999988999999999998765
No 91
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=59.67 E-value=18 Score=32.97 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=42.4
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccC------hHhHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY------PIQYRAAITGLLE 164 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~h------PeeY~~aV~~Fl~ 164 (306)
..-|.+.+-|++|+.++++.-+..++.|-+. |-+-.|.||+-.+ |+-| ..+.+|+.
T Consensus 116 lpfps~vvaSrnDp~~~~~~a~~~a~~wgs~--------lv~~g~~GHiN~~sG~g~wpeg~-~~l~~~~s 177 (181)
T COG3545 116 LPFPSVVVASRNDPYVSYEHAEDLANAWGSA--------LVDVGEGGHINAESGFGPWPEGY-ALLAQLLS 177 (181)
T ss_pred CCCceeEEEecCCCCCCHHHHHHHHHhccHh--------heecccccccchhhcCCCcHHHH-HHHHHHhh
Confidence 4459999999999999999999999999764 4466788888765 5555 34444443
No 92
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=57.84 E-value=24 Score=35.81 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=53.1
Q ss_pred CC-CCEEEEecCCCCccChHHHHHHHHHHHHCCC-ceEEEEcCCCCCCccccc--ChHhHHHHHHHHHHH
Q 021902 100 LG-TPFLIICSDNDELAPQQVIYNFARHLLALGG-DVKLVKLNGSPHIGHYEY--YPIQYRAAITGLLEK 165 (306)
Q Consensus 100 ~~-aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~-~V~~~~Fe~SpHV~H~R~--hPeeY~~aV~~Fl~~ 165 (306)
.. +|-|-+.++.|.|+||...+...+.....+- +.+...+.+..|+|-+-. -+++=|-.|.+|+.+
T Consensus 336 I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 336 ITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred CcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 45 8999999999999999999999888655542 455677778889988854 478888888888864
No 93
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=51.12 E-value=23 Score=36.04 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=52.5
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCccccc---ChHhHHHH-HHHHHHHHHhhhHH
Q 021902 99 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEY---YPIQYRAA-ITGLLEKAASVYSQ 172 (306)
Q Consensus 99 ~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~---hPeeY~~a-V~~Fl~~~~~~~~~ 172 (306)
..+.|-|+|.|.+|+++|...|- .+..++.= .|-.+.=.-..|+|-+.. .+..|... +.+||.+.......
T Consensus 320 ~I~VP~L~ina~DDPv~p~~~ip--~~~~~~np-~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~~~~~~ 394 (409)
T KOG1838|consen 320 KIKVPLLCINAADDPVVPEEAIP--IDDIKSNP-NVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAIFQDEV 394 (409)
T ss_pred cccccEEEEecCCCCCCCcccCC--HHHHhcCC-cEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHHhhhcc
Confidence 46689999999999999987443 33444332 566666667778888888 77888888 99999988776443
No 94
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=49.86 E-value=28 Score=35.45 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=34.5
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL 139 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~F 139 (306)
+-.+-.+|..|+++|.++=+++++..+++|++|+....
T Consensus 294 ~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfda~l~lI 331 (403)
T PF11144_consen 294 IIYVSYHSIKDDLAPAEDKEELYEILKNLGFDATLHLI 331 (403)
T ss_pred eEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 35566789999999999999999999999999999887
No 95
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=48.88 E-value=25 Score=32.66 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=45.3
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
.|-+-.+++.|++||.+--++..+..++.|..++.+-|++-.| .- -|+|- ..|..|+++
T Consensus 145 ~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h---~~-~~~e~-~~~~~~~~~ 203 (206)
T KOG2112|consen 145 TPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGH---ST-SPQEL-DDLKSWIKT 203 (206)
T ss_pred chhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccc---cc-cHHHH-HHHHHHHHH
Confidence 5789999999999999999999999999999966666666554 32 35554 556666654
No 96
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=46.64 E-value=11 Score=36.98 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=8.6
Q ss_pred CCCCEEEEecCCCCccC-hHHHHHHHHHHHHC
Q 021902 100 LGTPFLIICSDNDELAP-QQVIYNFARHLLAL 130 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp-~~dVE~ha~~ar~~ 130 (306)
+..|-|+|||.+|+-|| |-|.++++++|++.
T Consensus 231 v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 231 VSKPLLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp --S-EEEEEE--TT------------------
T ss_pred CCCceEEEecCCCceecccccccccccccccc
Confidence 44699999999999986 47788899999863
No 97
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=46.03 E-value=37 Score=30.54 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=39.8
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 163 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl 163 (306)
...+.+.|-++.|++++|+.-.+.. .|. .....+|+ .|--.+-++|...|.+|+
T Consensus 133 ~~~~~lvll~~~DEvLd~~~a~~~~-----~~~--~~~i~~gg---dH~f~~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 133 NPERYLVLLQTGDEVLDYREAVAKY-----RGC--AQIIEEGG---DHSFQDFEEYLPQIIAFL 186 (187)
T ss_pred CCccEEEEEecCCcccCHHHHHHHh-----cCc--eEEEEeCC---CCCCccHHHHHHHHHHhh
Confidence 3468999999999999996443333 233 23456676 777788899999999886
No 98
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=45.18 E-value=26 Score=34.95 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=47.5
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
....+++.++|.-||-..|.++.+.|. |..|+. -++.||+-|-.|.+-|.+++.+.++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v~~Lq~~WP--GsEvR~---l~gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGVLSLQEIWP--GSEVRY---LPGGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CcEEEEEecCceEechhhcchHHHhCC--CCeEEE---ecCCcEEEeeechHHHHHHHHHHhh
Confidence 467789999999999999987777663 444444 4669999999999999999988765
No 99
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=41.53 E-value=45 Score=30.29 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=32.9
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG 141 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~ 141 (306)
...|+|||++=++- -+..+++.++++++|++|....|..
T Consensus 132 r~ylWlLsRtP~~s-~~~~~~ml~~ak~~Gfdv~~li~~~ 170 (174)
T COG3040 132 REYLWLLSRTPTLS-QETLKRMLEIAKRRGFDVSKLIFVQ 170 (174)
T ss_pred cceEEEEecCCCCC-HHHHHHHHHHHHHcCCCcceeEecC
Confidence 37999999985554 5678899999999999999999864
No 100
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=41.51 E-value=29 Score=30.73 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=45.8
Q ss_pred HHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHHHHhhhHHHhhhhccc-cCCCCccchhhhhhhhhhhhhccc
Q 021902 128 LALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGEI-SGMEGTHDEISELICDLQNVAVNS 204 (306)
Q Consensus 128 r~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~~~~~~~~l~~~~-~~~~g~~~~~~~~~~~~~~~~~~~ 204 (306)
|..|.++-. ...-..|+.++-..+++|++.+..|+...+.. +|. +=+....+...++...|++.....
T Consensus 6 r~s~~~~~~-~~~~g~H~c~~Y~~~~e~~~~~~~Fi~~GL~~--------ge~~l~v~~~~~~~~~l~~~L~~~~~d~ 74 (191)
T PF14417_consen 6 RKSGIDAIG-DIPWGDHICAFYDDEEELLEVLVPFIREGLAR--------GERCLYVAPDPRRVEELRDELRKAGPDV 74 (191)
T ss_pred ccccCcccc-CCCCCceEEEEECCHHHHHHHHHHHHHHHHHC--------CCeEEEEECCCCCHHHHHHHHHhcCCch
Confidence 445666655 56667899999999999999999999977655 222 222211445556667777664444
No 101
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=40.48 E-value=1.5e+02 Score=29.37 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=42.4
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHC-CCceEEEEcCCCCCCccccc--ChHhHHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLAL-GGDVKLVKLNGSPHIGHYEY--YPIQYRAAITGLLEKA 166 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~-G~~V~~~~Fe~SpHV~H~R~--hPeeY~~aV~~Fl~~~ 166 (306)
...|.+++|+..|.+.+.. .|.+..|+. =..-+.+.-+ |+||+-+ +|++-.+++.+|+++-
T Consensus 257 i~iPv~fi~G~~D~v~~~p---~~~~~~rk~vp~l~~~vv~~---~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 257 ITIPVLFIWGDLDPVLPYP---IFGELYRKDVPRLTERVVIE---GIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cccceEEEEecCcccccch---hHHHHHHHhhccccceEEec---CCcccccccCHHHHHHHHHHHHHhh
Confidence 4469999999999999988 444444432 1112445554 6666654 5999999999999863
No 102
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=39.66 E-value=78 Score=31.94 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=48.0
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcc--cccChHhHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGH--YEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H--~R~hPeeY~~aV~~Fl~~ 165 (306)
.++|.|.+=...|-+-|.++..+.++..+..|. .+.+ +|+| || +-.+.+.|-..|.+||+.
T Consensus 305 i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i-~S~~-GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 305 IKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREI-DSPY-GHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred CccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEe-cCCC-CchhhhcchhhhhHHHHHHhhc
Confidence 568999999999999999999999999988765 4444 4666 66 334566677889998863
No 103
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=39.54 E-value=51 Score=32.00 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=41.9
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhH-HHHHHHHHHH
Q 021902 98 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQY-RAAITGLLEK 165 (306)
Q Consensus 98 ~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY-~~aV~~Fl~~ 165 (306)
...++|.|+-.+-.|++||...+-+....+.. +.+.+.++...|= .+.++ ++...+|+++
T Consensus 259 ~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~---~K~l~vyp~~~He-----~~~~~~~~~~~~~l~~ 319 (320)
T PF05448_consen 259 RRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPG---PKELVVYPEYGHE-----YGPEFQEDKQLNFLKE 319 (320)
T ss_dssp GG--SEEEEEEETT-SSS-HHHHHHHHCC--S---SEEEEEETT--SS-----TTHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEecCCCCCCchhHHHHHhccCC---CeeEEeccCcCCC-----chhhHHHHHHHHHHhc
Confidence 35779999999999999999999998888754 6899999988773 33444 7878888765
No 104
>PF09497 Med12: Transcription mediator complex subunit Med12; InterPro: IPR019035 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med12 is a component of the evolutionarily conserved Mediator complex []. The Med12 subunit may specifically regulate transcription of targets of the Wnt signaling pathway and SHH signaling pathway. Med12 is a negative regulator of the Gli3-dependent sonic hedgehog signaling pathway via its interaction with Gli3 within the Mediator. A complex is formed between Med12, Med13, CDK8 and CycC which is responsible for suppression of transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.97 E-value=11 Score=28.65 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.4
Q ss_pred CccchhhhhhhcccccCCCc
Q 021902 252 SAHSVLGEFLFDVCVPKNVE 271 (306)
Q Consensus 252 ~~~~~~~~~l~~~~~pk~~e 271 (306)
=|||.=|+.|||.|.-+||.
T Consensus 36 iPhg~k~~~ll~~l~~~~VP 55 (64)
T PF09497_consen 36 IPHGIKKEELLEQLCEYNVP 55 (64)
T ss_pred CCCcccHHHHHHHHHHcCCC
Confidence 39999999999999999986
No 105
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=34.67 E-value=80 Score=29.48 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=44.8
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 98 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 98 ~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
.+.++|-|+++.+.|+++++..+-+.+ ++.+.+.+.-.++-|-=|-+. ++-.++|.+||+
T Consensus 146 ~P~P~~~lvi~g~~Ddvv~l~~~l~~~-----~~~~~~~i~i~~a~HFF~gKl--~~l~~~i~~~l~ 205 (210)
T COG2945 146 APCPSPGLVIQGDADDVVDLVAVLKWQ-----ESIKITVITIPGADHFFHGKL--IELRDTIADFLE 205 (210)
T ss_pred cCCCCCceeEecChhhhhcHHHHHHhh-----cCCCCceEEecCCCceecccH--HHHHHHHHHHhh
Confidence 467789999999999888766554432 337888899999999766543 566678888875
No 106
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=34.06 E-value=1e+02 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.064 Sum_probs=36.5
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccC
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY 151 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~h 151 (306)
..+|....||++|-++..+||+.+......... ...+.+++=.|..=+=.+
T Consensus 331 i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~ 381 (403)
T KOG2624|consen 331 IKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGL 381 (403)
T ss_pred cccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeecc
Confidence 468999999999999999999999888766544 333335555555444333
No 107
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=32.48 E-value=82 Score=32.46 Aligned_cols=43 Identities=21% Similarity=0.110 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHH
Q 021902 116 PQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGL 162 (306)
Q Consensus 116 p~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~F 162 (306)
.-++++.+.+.+++.|.+|..+.| |||--+.+++-|..++...
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsf----HvGSgc~d~~~y~~Ai~dA 233 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSF----HVGSGCTDLQAYRDAISDA 233 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEE----EecCCCCCHHHHHHHHHHH
Confidence 567899999999999999999988 8999999999999998654
No 108
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=29.61 E-value=72 Score=28.53 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=29.1
Q ss_pred hccCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC
Q 021902 95 YNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG 141 (306)
Q Consensus 95 ~~~~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~ 141 (306)
+.......|.|-+++++|.+++.+.-+.+++..... .+...+++
T Consensus 155 ~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g 198 (212)
T PF03959_consen 155 YDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG 198 (212)
T ss_dssp T--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS
T ss_pred hccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC
Confidence 333456789999999999999999899999888775 44455554
No 109
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=29.26 E-value=97 Score=24.77 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=35.9
Q ss_pred CCCCccChHHH---HHHHHHHHHCCCce----EEEEcCCCC---CCcccccChHhHHHHHHHHHHHHHh
Q 021902 110 DNDELAPQQVI---YNFARHLLALGGDV----KLVKLNGSP---HIGHYEYYPIQYRAAITGLLEKAAS 168 (306)
Q Consensus 110 kaD~Lvp~~dV---E~ha~~ar~~G~~V----~~~~Fe~Sp---HV~H~R~hPeeY~~aV~~Fl~~~~~ 168 (306)
.+-.|||.+.. ...-..+++.|+++ ..+.-+.+. =..|-..||.+|-+.|.+=|.++..
T Consensus 17 qaHHII~~~~~~~~~~~~~~l~~~g~~in~~~Ngv~Lp~~~~~~~~~H~g~H~~~Y~~~V~~~L~~~~~ 85 (109)
T PF14412_consen 17 QAHHIIPKNNFERSPKLRKILEKYGIDINDPENGVWLPNSEKPGRPPHRGRHPNEYNKYVRERLDKIEN 85 (109)
T ss_pred ccceecCccchhccHHHHHHHHHcCCCcCCccceeeeeccCCCCcCCcCCCCcHHHHHHHHHHHHHHHH
Confidence 34456666633 44555666778774 222222110 1124488999999999998888776
No 110
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=27.85 E-value=62 Score=28.47 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=26.0
Q ss_pred CCCE-EEEecCCCCccChHHHHHHHHHHHHC
Q 021902 101 GTPF-LIICSDNDELAPQQVIYNFARHLLAL 130 (306)
Q Consensus 101 ~aPr-LYLYSkaD~Lvp~~dVE~ha~~ar~~ 130 (306)
..|. ++++++.|++||.+..++.++.+++.
T Consensus 167 ~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 167 PTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 3465 57889999999999999999999886
No 111
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=27.54 E-value=64 Score=26.91 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=37.8
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHC-CCceEEEEcCCCCCCcccccChHhHHHH
Q 021902 103 PFLIICSDNDELAPQQVIYNFARHLLAL-GGDVKLVKLNGSPHIGHYEYYPIQYRAA 158 (306)
Q Consensus 103 PrLYLYSkaD~Lvp~~dVE~ha~~ar~~-G~~V~~~~Fe~SpHV~H~R~hPeeY~~a 158 (306)
+.++.||. |.--.-+-|.++++.+++. |++|..=.|+... ++ +..|.++...
T Consensus 2 kVfI~Ys~-d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~-i~--~~g~~~W~~~ 54 (150)
T PF08357_consen 2 KVFISYSH-DSEEHKEWVLALAEFLRQNCGIDVILDQWELNE-IA--RQGPPRWMER 54 (150)
T ss_pred eEEEEeCC-CCHHHHHHHHHHHHHHHhccCCceeecHHhhcc-cc--cCCHHHHHHH
Confidence 46788999 5555668899999999999 9999988887532 11 3355555444
No 112
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=26.52 E-value=17 Score=27.34 Aligned_cols=8 Identities=63% Similarity=1.086 Sum_probs=1.7
Q ss_pred hhcccccCC
Q 021902 261 LFDVCVPKN 269 (306)
Q Consensus 261 l~~~~~pk~ 269 (306)
||| ||||.
T Consensus 47 lyD-kVP~~ 54 (57)
T PF05321_consen 47 LYD-KVPKS 54 (57)
T ss_dssp --S-S--CH
T ss_pred hhh-hCCHH
Confidence 344 44443
No 113
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=26.16 E-value=74 Score=30.47 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=42.1
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHH
Q 021902 98 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAIT 160 (306)
Q Consensus 98 ~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~ 160 (306)
.+..+|.|=.|+..|.+||-++-.++|+.... -+.+.-|+.-|. |-.|..+-...+.
T Consensus 196 Id~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHn--yt~~q~~l~~lgl 252 (269)
T KOG4667|consen 196 IDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHN--YTGHQSQLVSLGL 252 (269)
T ss_pred cCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcC--ccchhhhHhhhcc
Confidence 46779999999999999999999999988765 456677777775 4444444444333
No 114
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=24.11 E-value=21 Score=27.92 Aligned_cols=15 Identities=60% Similarity=0.833 Sum_probs=9.1
Q ss_pred hhhhhhhcc-cccCCC
Q 021902 256 VLGEFLFDV-CVPKNV 270 (306)
Q Consensus 256 ~~~~~l~~~-~~pk~~ 270 (306)
+.|--|||+ ||||.|
T Consensus 51 ~~~~kLyD~gkVP~sV 66 (71)
T PRK10391 51 VSGGRLFDLGQVPKSV 66 (71)
T ss_pred HhCccccccccCCHHH
Confidence 345556774 777765
No 115
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=23.75 E-value=62 Score=29.99 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 120 IYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 120 VE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
+++.++.+++..++.-.+.+.+.-.+||- .++++|.++|+.+=+
T Consensus 129 ~~~~~~~l~~~~~~~v~~~~~~~D~~GH~-~~~~~~~~~ie~~D~ 172 (252)
T PF01676_consen 129 AEAAIEALKKDKYDFVFVHVKGTDEAGHR-GDPEAYIEAIERIDR 172 (252)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEHHHHHHTT-T-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCeEEEeecCcchhhcc-CCHHHHHHHHHHHHH
Confidence 67778888888899988889899999994 689999998876655
No 116
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=23.65 E-value=3e+02 Score=25.04 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=48.1
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCC--CCCcccc-------cChHhHHHHHHHHHHHHHhhhHHH
Q 021902 103 PFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGS--PHIGHYE-------YYPIQYRAAITGLLEKAASVYSQR 173 (306)
Q Consensus 103 PrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~S--pHV~H~R-------~hPeeY~~aV~~Fl~~~~~~~~~~ 173 (306)
..|++||..|--.- +-.+..+.++++.|+.|+.+.-..- +--+|+- .+-..|-+++.+|+++-......+
T Consensus 2 k~LIlYstr~GqT~-kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~k 80 (175)
T COG4635 2 KTLILYSTRDGQTR-KIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTK 80 (175)
T ss_pred ceEEEEecCCCcHH-HHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcC
Confidence 47999999998763 4567778999999999877653211 1122221 233456788999999887776655
Q ss_pred h
Q 021902 174 I 174 (306)
Q Consensus 174 ~ 174 (306)
.
T Consensus 81 P 81 (175)
T COG4635 81 P 81 (175)
T ss_pred C
Confidence 4
No 117
>PRK10945 gene expression modulator; Provisional
Probab=23.18 E-value=19 Score=28.19 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=5.0
Q ss_pred hhhcccccCCC
Q 021902 260 FLFDVCVPKNV 270 (306)
Q Consensus 260 ~l~~~~~pk~~ 270 (306)
-||| ||||.|
T Consensus 58 KLyD-kVP~~v 67 (72)
T PRK10945 58 KLYD-KIPSSV 67 (72)
T ss_pred hhHh-hcCHHH
Confidence 3555 555544
No 118
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=22.87 E-value=81 Score=26.51 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.4
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc
Q 021902 103 PFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL 139 (306)
Q Consensus 103 PrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~F 139 (306)
-.|+|.|++ +-.+.+.+++..+.++++|+++....+
T Consensus 105 ~~~WILsR~-p~~~~~~~~~~~~~~~~~G~d~~~l~~ 140 (143)
T PF08212_consen 105 EYLWILSRT-PQLSEETYAEILDRAKQQGYDVSKLIW 140 (143)
T ss_dssp CEEEEEESS-SS--HHHHHHHHHHHHHTT--GGGEEE
T ss_pred CEEEEEeCC-CCCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 689999998 666888999999999999999866554
No 119
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=22.32 E-value=3.9e+02 Score=26.86 Aligned_cols=89 Identities=29% Similarity=0.392 Sum_probs=56.0
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHH-----HHHHHHHHHHhhhHHHhhh
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRA-----AITGLLEKAASVYSQRIRQ 176 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~-----aV~~Fl~~~~~~~~~~~~l 176 (306)
++.++|+-.+|.- .-+.+++.++.+.+.|..|..+.+++ -+||++|.. ++.+.++++.....-....
T Consensus 300 ~~~vvl~~D~D~a-G~~aa~r~~~~l~~~g~~v~v~~lp~-------gkDpdd~l~~~g~~~~~~~l~~a~~~~~f~~~~ 371 (415)
T TIGR01391 300 ADEIILCFDGDKA-GRKAALRAIELLLPLGINVKVIKLPG-------GKDPDEYLRKEGVEALKKLLENSKSLIEFLIAR 371 (415)
T ss_pred CCeEEEEeCCCHH-HHHHHHHHHHHHHHcCCeEEEEECCC-------CCCHHHHHHHhCHHHHHHHHhcCCCHHHHHHHH
Confidence 3689999999974 44567777888888899999888875 379999975 5666666644443333333
Q ss_pred hccccCCCCccchhhhhhhhhhh
Q 021902 177 LGEISGMEGTHDEISELICDLQN 199 (306)
Q Consensus 177 ~~~~~~~~g~~~~~~~~~~~~~~ 199 (306)
..+..+.+ +-++....+.++..
T Consensus 372 ~~~~~~~~-~~~~~~~~~~~~~~ 393 (415)
T TIGR01391 372 LLSNYNLD-TPEEKAKLVEELLP 393 (415)
T ss_pred HHhcCCCC-CHHHHHHHHHHHHH
Confidence 33333332 23333444444443
No 120
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=22.30 E-value=2e+02 Score=29.04 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=39.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 165 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~~ 165 (306)
..+|.+|||+..|=|=. ..-.+.-..+ .-..|+...-+++.|- -|-.+|+.+-+.|.+++.+
T Consensus 302 ~~~pv~fiyG~~dWmD~-~~g~~~~~~~--~~~~~~~~~v~~aGHh-vylDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 302 KDVPVTFIYGDRDWMDK-NAGLEVTKSL--MKEYVEIIIVPGAGHH-VYLDNPEFFNQIVLEECDK 363 (365)
T ss_pred cCCCEEEEecCcccccc-hhHHHHHHHh--hcccceEEEecCCCce-eecCCHHHHHHHHHHHHhc
Confidence 34799999999885532 2222222222 1123666666666662 2567799999999998875
No 121
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=22.24 E-value=1.8e+02 Score=28.26 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=45.1
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc-CCCCCCcccccChHhHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL-NGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~F-e~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
+++|.+++-..+|+-+|+..++.++.--+.. ..++... +.-.-+|||+-..+......+++|+
T Consensus 215 VrtPi~~~~~~DD~w~P~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~ 278 (281)
T COG4757 215 VRTPITFSRALDDPWAPPASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLG 278 (281)
T ss_pred hcCceeeeccCCCCcCCHHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHH
Confidence 5679999999999999999999998776653 2222221 1112589999888877666666654
No 122
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=22.06 E-value=1.4e+02 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHH
Q 021902 100 LGTPFLIICSDNDELAPQQVIYNFARHLLA 129 (306)
Q Consensus 100 ~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~ 129 (306)
...|.||.||..|.||.-+.+++.+..-+.
T Consensus 211 ~~ikvli~ygg~DhLIEeeI~~E~a~~f~~ 240 (297)
T PF06342_consen 211 KPIKVLIAYGGKDHLIEEEISFEFAMKFKG 240 (297)
T ss_pred CCCcEEEEEcCcchhhHHHHHHHHHHHhCC
Confidence 447999999999999999999999876643
No 123
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=21.96 E-value=46 Score=33.95 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=0.0
Q ss_pred CEEEEecCCCCccChHHHHHHHHH-HHHCCCceEEEEcCCCCCCcc--cccChHhHHHHHHHHHHHHHhhhHHHhhhhcc
Q 021902 103 PFLIICSDNDELAPQQVIYNFARH-LLALGGDVKLVKLNGSPHIGH--YEYYPIQYRAAITGLLEKAASVYSQRIRQLGE 179 (306)
Q Consensus 103 PrLYLYSkaD~Lvp~~dVE~ha~~-ar~~G~~V~~~~Fe~SpHV~H--~R~hPeeY~~aV~~Fl~~~~~~~~~~~~l~~~ 179 (306)
|.+++++.-|.+-. |.-...++ +..+|+.+-.+.-++-.+..| ++.+.++++++|.+++....-+=..++..-|-
T Consensus 191 P~VIv~gGlDs~qe--D~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~ 268 (411)
T PF06500_consen 191 PTVIVCGGLDSLQE--DLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRPWVDHTRVGAWGF 268 (411)
T ss_dssp EEEEEE--TTS-GG--GGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEE
T ss_pred CEEEEeCCcchhHH--HHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCCccChhheEEEEe
Q ss_pred ccCCCCccchhhhhhhhhhhhhccccccccc-cccCC-CCccc
Q 021902 180 ISGMEGTHDEISELICDLQNVAVNSNQSLRR-VAVEP-SDHFF 220 (306)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~ 220 (306)
++|- ---++-|+...+ +|+. |+.+| .+|||
T Consensus 269 SfGG----------y~AvRlA~le~~-RlkavV~~Ga~vh~~f 300 (411)
T PF06500_consen 269 SFGG----------YYAVRLAALEDP-RLKAVVALGAPVHHFF 300 (411)
T ss_dssp THHH----------HHHHHHHHHTTT-T-SEEEEES---SCGG
T ss_pred ccch----------HHHHHHHHhccc-ceeeEeeeCchHhhhh
No 124
>PF15585 Imm46: Immunity protein 46
Probab=21.79 E-value=2.2e+02 Score=24.70 Aligned_cols=65 Identities=26% Similarity=0.298 Sum_probs=45.4
Q ss_pred EEecCCCC-ccChHHHHHHHHHHHHCCCc--eEEEEcCCC--CCCcccccChHhHHHHHHHHHHHHHhhh
Q 021902 106 IICSDNDE-LAPQQVIYNFARHLLALGGD--VKLVKLNGS--PHIGHYEYYPIQYRAAITGLLEKAASVY 170 (306)
Q Consensus 106 YLYSkaD~-Lvp~~dVE~ha~~ar~~G~~--V~~~~Fe~S--pHV~H~R~hPeeY~~aV~~Fl~~~~~~~ 170 (306)
+=|+.+|. .-.-+.+++..+...+.++. |......++ -|++.+-.|+-+++..|-+..++...+-
T Consensus 12 ~s~~~~D~~~~~~~~~~~i~~~i~~~~~~~~~~L~~~NG~~~l~~~g~~NHr~~~~~eii~lf~~i~e~a 81 (129)
T PF15585_consen 12 ESYSDEDDEAKLEKIIQEIQERISELDWGGLVDLRAMNGSYFLHFGGLSNHRGQEAPEIIELFERIAEIA 81 (129)
T ss_pred cccccCcchhhHHHHHHHHHHHHHhcCCCCeEEEEecCCcEEEEEccccCCCccchHHHHHHHHHHHHhC
Confidence 44666676 33444455555556666665 665555555 5999999999999999998888776663
No 125
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=21.76 E-value=1.2e+02 Score=26.72 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=30.8
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc
Q 021902 102 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL 139 (306)
Q Consensus 102 aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~F 139 (306)
...++|||++= -++.+..+++.+.++++|++++...|
T Consensus 135 ~~~~wIlsR~p-~l~~~~~~~~~~~~~~~G~d~~~l~~ 171 (177)
T PRK10477 135 RDYLWILSRTP-TISDEVKQQMLAVATREGFDVSKLIW 171 (177)
T ss_pred CCEEEEEeCCC-CCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 57899999864 44567889999999999999987777
No 126
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=21.73 E-value=1.1e+02 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHCCCceEEEE
Q 021902 116 PQQVIYNFARHLLALGGDVKLVK 138 (306)
Q Consensus 116 p~~dVE~ha~~ar~~G~~V~~~~ 138 (306)
.-..|.+|++.+|+.|++|+.+.
T Consensus 32 SRtaVwK~Iq~Lr~~G~~I~s~~ 54 (79)
T COG1654 32 SRTAVWKHIQQLREEGVDIESVR 54 (79)
T ss_pred cHHHHHHHHHHHHHhCCceEecC
Confidence 34579999999999999998764
No 127
>PHA02820 phospholipase-D-like protein; Provisional
Probab=20.74 E-value=1.5e+02 Score=30.08 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=40.1
Q ss_pred EecCCCCccChHHHHHHHH-HHHHCCCceEEEE--cCCCCCCcccccChHhHHHHHHHHHHHHHh
Q 021902 107 ICSDNDELAPQQVIYNFAR-HLLALGGDVKLVK--LNGSPHIGHYEYYPIQYRAAITGLLEKAAS 168 (306)
Q Consensus 107 LYSkaD~Lvp~~dVE~ha~-~ar~~G~~V~~~~--Fe~SpHV~H~R~hPeeY~~aV~~Fl~~~~~ 168 (306)
+|+.+++..-|..+.+-+. .+.++|++|+... |.+++++.+ .|...+.++++..+.
T Consensus 245 ~~~~~~~~~yw~~i~~AL~~AA~~RGV~VriLvp~~~d~~~~~~------a~~~~l~~L~~~gv~ 303 (424)
T PHA02820 245 IYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISCWQRSSFIMR------NFLRSIAMLKSKNIN 303 (424)
T ss_pred eeccCCcccchHHHHHHHHHHHHhCCCEEEEEEeccCCCCccHH------HHHHHHHHHhccCce
Confidence 3557788899999998876 4788999998864 788877763 455555555544333
No 128
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=20.74 E-value=34 Score=28.63 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=8.4
Q ss_pred hhhcccccCCCc
Q 021902 260 FLFDVCVPKNVE 271 (306)
Q Consensus 260 ~l~~~~~pk~~e 271 (306)
++||++||.||+
T Consensus 104 ~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 104 LVIDLAVPRDID 115 (135)
T ss_dssp EEEES-SS-SB-
T ss_pred ceeccccCCCCC
Confidence 789999999997
No 129
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.14 E-value=1.5e+02 Score=28.29 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=45.1
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCCcccccChHhHHHHHHHHHH
Q 021902 98 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 164 (306)
Q Consensus 98 ~~~~aPrLYLYSkaD~Lvp~~dVE~ha~~ar~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~Fl~ 164 (306)
.+..+|...+.++.|.+|.++++....+.+++ +.+.+.|+|. |- ++.+..++-.+.+.+.|.
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdGg-HF-fl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDGG-HF-FLNQQREEVLARLEQHLA 234 (244)
T ss_pred CCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecCc-ce-ehhhhHHHHHHHHHHHhh
Confidence 46789999999999999999887766666654 7889999863 31 344455666666666554
Done!