Query 021903
Match_columns 306
No_of_seqs 308 out of 1551
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3752 Steroid 5-alpha reduct 100.0 2.1E-59 4.7E-64 418.7 27.0 250 8-264 14-271 (272)
2 PF06966 DUF1295: Protein of u 100.0 9.3E-59 2E-63 422.9 24.9 228 25-252 2-235 (235)
3 KOG4650 Predicted steroid redu 100.0 1E-48 2.3E-53 349.0 18.3 247 6-258 6-295 (311)
4 PF01222 ERG4_ERG24: Ergostero 99.8 3E-20 6.4E-25 182.9 18.1 161 88-259 252-431 (432)
5 COG2020 STE14 Putative protein 99.8 4.9E-19 1.1E-23 156.4 16.4 117 135-260 67-186 (187)
6 KOG1435 Sterol reductase/lamin 99.8 7.4E-19 1.6E-23 168.9 7.6 162 87-259 248-427 (428)
7 PF04191 PEMT: Phospholipid me 99.6 2E-15 4.4E-20 120.6 10.6 99 138-245 3-106 (106)
8 KOG2628 Farnesyl cysteine-carb 99.6 5.5E-15 1.2E-19 128.8 8.8 111 140-260 85-201 (201)
9 PF04140 ICMT: Isoprenylcystei 99.4 1.5E-12 3.3E-17 102.8 9.2 58 143-200 3-63 (94)
10 KOG1638 Steroid reductase [Lip 99.4 1.9E-12 4.2E-17 116.4 10.5 110 136-259 147-256 (257)
11 PLN02392 probable steroid redu 99.3 1.2E-11 2.5E-16 114.1 10.8 110 136-259 150-259 (260)
12 PF02544 Steroid_dh: 3-oxo-5-a 99.2 3.8E-11 8.2E-16 102.5 9.6 110 136-259 40-149 (150)
13 PLN02560 enoyl-CoA reductase 99.1 8.4E-10 1.8E-14 104.6 11.5 115 136-258 192-307 (308)
14 PLN03164 3-oxo-5-alpha-steroid 99.0 1.7E-09 3.6E-14 102.2 10.5 113 135-259 208-322 (323)
15 COG1755 Uncharacterized protei 98.9 7.4E-09 1.6E-13 88.4 9.9 96 133-237 66-167 (172)
16 KOG1640 Predicted steroid redu 97.9 0.00046 9.9E-09 64.3 14.3 109 137-259 193-303 (304)
17 KOG1639 Steroid reductase requ 97.5 0.00036 7.9E-09 63.7 7.1 106 139-259 189-297 (297)
18 PF07298 NnrU: NnrU protein; 97.0 0.0021 4.4E-08 57.2 7.0 95 135-254 67-161 (191)
19 PLN02797 phosphatidyl-N-dimeth 88.3 1.3 2.8E-05 38.0 5.7 61 139-200 67-132 (164)
20 COG4094 Predicted membrane pro 82.8 0.99 2.1E-05 40.4 2.5 76 172-258 98-173 (219)
21 KOG4142 Phospholipid methyltra 64.4 44 0.00096 29.2 7.9 64 137-200 97-165 (208)
22 KOG3088 Secretory carrier memb 54.8 1.2E+02 0.0026 28.9 9.6 24 94-117 188-215 (313)
23 PF11361 DUF3159: Protein of u 47.3 2E+02 0.0044 25.4 12.7 35 22-56 38-72 (187)
24 PF03818 MadM: Malonate/sodium 45.9 51 0.0011 23.9 4.5 53 3-58 6-58 (60)
25 TIGR00026 hi_GC_TIGR00026 deaz 33.6 31 0.00066 28.0 2.0 21 235-258 89-109 (113)
26 COG3462 Predicted membrane pro 33.3 1.4E+02 0.0031 24.3 5.7 12 229-240 88-99 (117)
27 COG1133 SbmA ABC-type long-cha 32.7 84 0.0018 30.4 5.0 84 108-192 207-314 (405)
28 PF15113 TMEM117: TMEM117 prot 28.9 99 0.0021 30.3 4.8 81 32-116 38-119 (415)
29 COG3162 Predicted membrane pro 26.4 3.4E+02 0.0074 21.7 7.9 63 91-154 12-80 (102)
30 PF04075 DUF385: Domain of unk 23.3 70 0.0015 26.6 2.5 21 235-258 107-127 (132)
31 PF05975 EcsB: Bacterial ABC t 22.9 1.7E+02 0.0037 28.5 5.5 67 180-262 275-342 (386)
No 1
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=100.00 E-value=2.1e-59 Score=418.73 Aligned_cols=250 Identities=30% Similarity=0.573 Sum_probs=221.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccceEeeeccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHHHhhhC
Q 021903 8 HFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILN 87 (306)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~D~~w~~~~~~~a~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~ 87 (306)
+.....++..++.+.+.|+||..+||++++|..||.++++.|+..+..+.+...|+.+++.++++||+||+.|+++|..+
T Consensus 14 ~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR~~~ 93 (272)
T COG3752 14 MVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRRTRG 93 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34556677778888999999999999999999999999999988888777766799999999999999999999999999
Q ss_pred cCcchhhHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021903 88 WGEDRRFDEMRSNLGK-------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKL 160 (306)
Q Consensus 88 ~~eD~Ry~~~r~~~~~-------~~~~~~~Q~~lv~l~~lPv~~~~~~~~~~~l~~~~~~G~~l~~~G~~le~~Ad~ql~ 160 (306)
+|||+||.++|+++++ ++.+|.+|+++.+++++|+++++.. .+.++.+.|++|++++++|+.+|+.+|.|+.
T Consensus 94 ~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~-~~~~~~~~d~~g~~iwivg~~fE~lgD~QL~ 172 (272)
T COG3752 94 KGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALN-GPREFGWWDVIGLAIWIVGIVFEALGDAQLW 172 (272)
T ss_pred CCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999998764 5677899999999999999998765 3567899999999999999999999999999
Q ss_pred hcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCch-HHHHHHHHHc
Q 021903 161 SFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIP-LLEESADKKF 239 (306)
Q Consensus 161 ~f~~~~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~l~~~~ll~~~s~i~-~~E~~l~~ky 239 (306)
.||++|+|||++|++|+||++||||||||.|+|||+++++.+-. ...++..+|++|+.++.++||+| +||+++.+|
T Consensus 173 ~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~--~~~W~~~sPllmt~LL~~vSGvp~l~ekm~k~r- 249 (272)
T COG3752 173 VFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEW--LLLWAVASPLLMTWLLVHVSGVPPLEEKMLKSR- 249 (272)
T ss_pred HHHhChhhccccccccceecccCcchHHHHHHHHHHHHHHHhhh--hHhhhcccHHHHHHHHHHhcCCChHHHHHhccc-
Confidence 99999999999999999999999999999999999999987521 12235689999999999999999 555444444
Q ss_pred CCchHHHHHHhhCCcccccCCCCCC
Q 021903 240 GNMPAYRLYKKTTSPLIPLPPVVYG 264 (306)
Q Consensus 240 G~~~~Y~~Y~krt~~~iP~~~~~~~ 264 (306)
|+|++||+||++|+|++|+...
T Consensus 250 ---~~fr~Yq~rt~~F~P~~~k~~~ 271 (272)
T COG3752 250 ---PGFREYQRRTNAFFPRPPKKAL 271 (272)
T ss_pred ---HhHHHHHHHhcccCCCCCcccC
Confidence 8999999999999999998754
No 2
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=100.00 E-value=9.3e-59 Score=422.94 Aligned_cols=228 Identities=43% Similarity=0.932 Sum_probs=211.7
Q ss_pred HHHHHHhccceEeeeccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHHHhhhCcCcchhhHHHHHhhh--
Q 021903 25 FVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLG-- 102 (306)
Q Consensus 25 ~~~s~~~~~~~~~D~~w~~~~~~~a~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~-- 102 (306)
|++|..++|++++|++||++++++++.++..+++.+.|++++++++++||+||+.|++.|..+++||+||+++|++++
T Consensus 2 w~~s~~~~n~s~vD~~ws~~~~~~a~~~~~~~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~~~~r~~~~~~ 81 (235)
T PF06966_consen 2 WIISLATRNESIVDILWSFGFVLVAWVYALFSDGFSPRQLLVAALVIVWGLRLGYFLFRRNLGWGEDWRYDDLRKKWGEW 81 (235)
T ss_pred eeehHhhCCCCEEECcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHhcCcc
Confidence 678999999999999999999999999998888889999999999999999999999999888899999999999863
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCcc
Q 021903 103 ----KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFW 178 (306)
Q Consensus 103 ----~~~~~~~~Q~~lv~l~~lPv~~~~~~~~~~~l~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~g~lvt~Gly 178 (306)
+++.+|++|+++++++++|+++++..+.+++++..+++|++++++|+.+|++||.||.+||++|+|++++|++|+|
T Consensus 82 ~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw 161 (235)
T PF06966_consen 82 FWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLW 161 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCee
Confidence 5778899999999999999999887555567899999999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhC
Q 021903 179 KYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 252 (306)
Q Consensus 179 ~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt 252 (306)
+|||||||+||+++|+|+++++.+...+..++++++|+++++++++++|+|..|+++.+|||++|+|+||||+|
T Consensus 162 ~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 162 RYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRRT 235 (235)
T ss_pred eeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhcC
Confidence 99999999999999999999987764443456889999999989999999999999999999999999999997
No 3
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=100.00 E-value=1e-48 Score=349.05 Aligned_cols=247 Identities=62% Similarity=1.088 Sum_probs=210.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccceEee-eccccHHHHHHHHHHHHh----------CC----------------
Q 021903 6 DSHFLALTAIVTVGYQLLFFVITALFKFDKVTD-FAGSTNFIIIALLTLILK----------GS---------------- 58 (306)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~D-~~w~~~~~~~a~~~~~~~----------~~---------------- 58 (306)
+++......++....|.++|.+....+.++..| .+.+..|++.+++++.++ ..
T Consensus 6 ~s~~a~~~vav~~~l~~i~f~~t~l~~~~~~tD~~ant~~Fvi~~vLt~vlgl~~~s~w~~d~~W~ilp~~~~~~f~~~~ 85 (311)
T KOG4650|consen 6 ASDAAKWKVAVSVYLQFIFFVITALFKFDQVTDFFANTTNFVILAVLTLVLGLWGVSVWTKDRLWHILPTAFSLHFLFYG 85 (311)
T ss_pred cCchhceeeeeeccHHHHHHHHHHHhccchHHHHHcCCchHHHHHHHHHHHHhccccceecccceeechHHHHHHHhhcc
Confidence 455555666777888999999999999999999 677777888887777552 11
Q ss_pred ----chhHHHHHHHHHHHHHHHhhHHHHHh-hhCcC-cchhhHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhh
Q 021903 59 ----WHFRQVVLTFLAVVWGLRLALFLLMR-ILNWG-EDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVN 126 (306)
Q Consensus 59 ----~~~r~~l~~~~v~~W~~RL~~~l~~R-~~~~~-eD~Ry~~~r~~~~~------~~~~~~~Q~~lv~l~~lPv~~~~ 126 (306)
.+.|+++++.++++|++|||+|.++| ++.+| ||+||+++|++.+| ++.+|++|+++++.+++|+|+++
T Consensus 86 l~n~~~~R~mIl~~L~~vWs~RLt~ny~rr~~~~wG~ED~Rf~d~R~~~gK~~~~~~~f~~~ifQ~v~l~~v~lPlyiv~ 165 (311)
T KOG4650|consen 86 LYNIASRRQMILTFLVVVWSLRLTYNYLRRGILQWGAEDRRFDDVRQNIGKWIYLFHLFYFWIFQAVWLWTVSLPLYIVN 165 (311)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcchheee
Confidence 23499999999999999999999999 67888 99999999999998 67889999999999999999998
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCc-ccccCccccccCcchHHHHHHHHHHHHHhcC
Q 021903 127 ASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFK---NSPENRGK-WCNVGFWKYSRHPNYFGEIFLWWGIFVASTP 202 (306)
Q Consensus 127 ~~~~~~~l~~~~~~G~~l~~~G~~le~~Ad~ql~~f~---~~~~~~g~-lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~ 202 (306)
++..+..+++.|++|+.+++.|+++|..||.|+..|+ .+++|.|| .|++|+|||||||||+||++.|||+++++.+
T Consensus 166 ~~d~~r~f~~wD~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~ 245 (311)
T KOG4650|consen 166 ASDGGRAFGPWDVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAP 245 (311)
T ss_pred ecCCccccChHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhh
Confidence 8765556999999999999999999999999999998 55677787 9999999999999999999999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCccccc
Q 021903 203 VLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPL 258 (306)
Q Consensus 203 ~~~g~~~~~~~~~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~ 258 (306)
+..|..|..+.++++.++++.+.+ ..|+...||| +.|+.|||+|++|||+
T Consensus 246 ~~egl~wtvi~~lv~~~~l~~~t~---lie~~~v~~~---~aYR~Yqktts~~ip~ 295 (311)
T KOG4650|consen 246 VLEGLEWTVIAGLVFLTLLLLFTS---LIELLEVEKY---PAYRVYQKTTSRFIPR 295 (311)
T ss_pred hhccchHHHHHHHHHHHHHHHHHh---hhhhhhhhhh---HHHHHHHhcccccccc
Confidence 777766766777777776666654 5566656787 8999999999999993
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.85 E-value=3e-20 Score=182.87 Aligned_cols=161 Identities=25% Similarity=0.334 Sum_probs=117.9
Q ss_pred cCcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHH-HHHH-HHHHHHHHHHHHHHHHHHHhc
Q 021903 88 WGED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV-DVIG-WIMWSVGVSIEAIADQQKLSF 162 (306)
Q Consensus 88 ~~eD---~Ry~~~r~~~~~~~~~~~~Q~~lv~l~~lPv~~~~~~~~~~~l~~~-~~~G-~~l~~~G~~le~~Ad~ql~~f 162 (306)
+.|+ ..+|...|++|.+..++-+-.+....++.+.|++.+ + ..+++. ..++ .++.++|..+...||.||..|
T Consensus 252 ~~E~~~l~t~Di~~d~fGfml~~g~l~~vPf~Yt~~~~yl~~~-p--~~l~~~~~~~~i~~l~~~gy~i~r~sn~QK~~F 328 (432)
T PF01222_consen 252 WNEEGYLTTMDITHDGFGFMLCFGDLVWVPFTYTLQARYLVDH-P--VELSWPTYAAAILALGLVGYYIFRGSNSQKNRF 328 (432)
T ss_pred HhhhhhheeeeeeEcCccceeehhhHhhhhHhhhcceeEEEeC-C--ccCCcHHHHHHHHHHHHHHHHHHHHhchhHHHh
Confidence 4566 568888899885555444333344434444445443 2 234444 2333 356789999999999999999
Q ss_pred CCCCC-------------CCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCch
Q 021903 163 KNSPE-------------NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIP 229 (306)
Q Consensus 163 ~~~~~-------------~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~l~~~~ll~~~s~i~ 229 (306)
|++|+ +..+|+++|.|+++|||||+||+++-+++++.+.- + ..+....|+++++++++. ..
T Consensus 329 R~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf---~-~~~pyfy~~~~~~lL~hR--~~ 402 (432)
T PF01222_consen 329 RRNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGF---S-SILPYFYPIFFTILLIHR--AR 402 (432)
T ss_pred cCCCCCCcccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhc---C-ccHHHHHHHHHHHHHhhh--HH
Confidence 97642 23479999999999999999999999999887532 1 234556777877777664 58
Q ss_pred HHHHHHHHHcCCchHHHHHHhhCC-cccccC
Q 021903 230 LLEESADKKFGNMPAYRLYKKTTS-PLIPLP 259 (306)
Q Consensus 230 ~~E~~l~~kyG~~~~Y~~Y~krt~-~~iP~~ 259 (306)
++|++|++||| ++|++||++|| ++||++
T Consensus 403 RD~~rC~~KYG--~~W~~Yc~~Vpy~~iP~i 431 (432)
T PF01222_consen 403 RDEERCRKKYG--KDWDEYCKRVPYRIIPGI 431 (432)
T ss_pred HHHHHHHHhhC--HHHHHHHHhCCEEEeCCc
Confidence 89999999999 99999999998 899975
No 5
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.9e-19 Score=156.40 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHH
Q 021903 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKN---SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 211 (306)
Q Consensus 135 ~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~---~~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~ 211 (306)
.+...+|+.+..+|..+..++..++.+... ++++.++++|+|+|+++|||+|+|.++..+|..+...+ ++.
T Consensus 67 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~------~~~ 140 (187)
T COG2020 67 SWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGS------LWA 140 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHh------HHH
Confidence 456788999999999999999999865432 23456789999999999999999999999999865432 223
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccCC
Q 021903 212 ILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 260 (306)
Q Consensus 212 ~~~~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~~ 260 (306)
+++.+.....+ +.-.+..||+.+.++|| ++|+||++|||+++|++.
T Consensus 141 l~~~~~~~~~~-~~~~i~~EEr~L~~~fg--~~Y~~Y~~rV~r~iP~~~ 186 (187)
T COG2020 141 LLIFVVLVALL-FLFRIREEERYLRAEFG--DEYREYRKRVPRLIPPLV 186 (187)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHhh--HHHHHHHHhCCccCCCCC
Confidence 33222222222 22247888999999999 899999999999999864
No 6
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.76 E-value=7.4e-19 Score=168.88 Aligned_cols=162 Identities=23% Similarity=0.350 Sum_probs=118.7
Q ss_pred CcCcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q 021903 87 NWGED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGW-IMWSVGVSIEAIADQQKLSF 162 (306)
Q Consensus 87 ~~~eD---~Ry~~~r~~~~~~~~~~~~Q~~lv~l~~lPv~~~~~~~~~~~l~~~~~~G~-~l~~~G~~le~~Ad~ql~~f 162 (306)
-++|+ .-+|.-++.+|.+..++-+-.+.....+...|+..+ +.++++....++ ++.++|..+...||.||..|
T Consensus 248 ~w~E~~~l~TmDi~hd~FGfmL~fgd~v~vP~~Yt~~~~yL~~h---pv~l~~~~a~~i~~l~l~gyyifr~an~QK~~F 324 (428)
T KOG1435|consen 248 LWNEELVLTTMDIAHDGFGFMLIFGDLVWVPFTYTLQALYLVSH---PVELGWPMAVGILVLLLLGYYIFRGANAQKNEF 324 (428)
T ss_pred HhhhhhhcchhhhhccCcceeeeehhhcccceeeecceeeEEEC---ccccchHHHHHHHHHHHhheeEeeccchhHHHH
Confidence 34666 567888888886655554444443333333444443 234666555554 56688999999999999999
Q ss_pred CCCC-------------CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCch
Q 021903 163 KNSP-------------ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIP 229 (306)
Q Consensus 163 ~~~~-------------~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~l~~~~ll~~~s~i~ 229 (306)
|+++ .+.+++.++|.|+++|||||+||++..+++++.+. .++ .+..+.++++++++++. ..
T Consensus 325 Rkn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~g---f~s-~lpyfy~iyf~~LLvhR--~~ 398 (428)
T KOG1435|consen 325 RKNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCG---FNS-PLPYFYPIYFTLLLVHR--AA 398 (428)
T ss_pred hcCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHHHHH--Hh
Confidence 9873 23578999999999999999999999998888652 111 23456677777777664 57
Q ss_pred HHHHHHHHHcCCchHHHHHHhhCC-cccccC
Q 021903 230 LLEESADKKFGNMPAYRLYKKTTS-PLIPLP 259 (306)
Q Consensus 230 ~~E~~l~~kyG~~~~Y~~Y~krt~-~~iP~~ 259 (306)
++|.+|++||| ++|++|+++|| +++|.+
T Consensus 399 RDe~rC~~KYG--~~W~~Yc~~VpyriiP~V 427 (428)
T KOG1435|consen 399 RDEHRCRSKYG--EDWEEYCRKVPYRILPYV 427 (428)
T ss_pred hhHHHHHHHHh--hhHHHHHhhCCcccCCCC
Confidence 89999999999 99999999998 888864
No 7
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.63 E-value=2e-15 Score=120.57 Aligned_cols=99 Identities=23% Similarity=0.373 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC---C--CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHH
Q 021903 138 DVIGWIMWSVGVSIEAIADQQKLSFKNS---P--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVI 212 (306)
Q Consensus 138 ~~~G~~l~~~G~~le~~Ad~ql~~f~~~---~--~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~ 212 (306)
.++|+++.++|+.+..++..++....+. + +++++++|+|+|+++|||+|+|.++.++|++++..+ .+ .+
T Consensus 3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s-----~~-~l 76 (106)
T PF04191_consen 3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGS-----WL-GL 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCc-----HH-HH
Confidence 5789999999999999998888765532 1 345679999999999999999999999999987532 22 22
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHcCCchHH
Q 021903 213 LGPIFLTLLLLFISGIPLLEESADKKFGNMPAY 245 (306)
Q Consensus 213 ~~~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y 245 (306)
+..+...++ .....+..||+.+.++|| ++|
T Consensus 77 ~~~~~~~~~-~~~~~~~~EE~~L~~~fG--~~Y 106 (106)
T PF04191_consen 77 LLAVLAFLL-YYIFIIRFEERFLERRFG--EEY 106 (106)
T ss_pred HHHHHHHHH-HHHHHHHhHHHHHHHHhC--cCC
Confidence 222222222 222224578888999999 776
No 8
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.5e-15 Score=128.81 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-c----CCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 021903 140 IGWIMWSVGVSIEAIADQQKLS-F----KNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (306)
Q Consensus 140 ~G~~l~~~G~~le~~Ad~ql~~-f----~~~~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~ 214 (306)
+|+.+..+|-+.+..|..+... | ++++.++++++++|+|+|+|||.|.|-++-+.|..++..+ .++++
T Consensus 85 ~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~n------pis~v- 157 (201)
T KOG2628|consen 85 LGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCN------PISLV- 157 (201)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHHHHHHHHHHHhC------HHHHH-
Confidence 5667777777777777766632 2 2344567889999999999999999998888887776543 22222
Q ss_pred HHHHHHHHHHH-hCchHHHHHHHHHcCCchHHHHHHhhCCcccccCC
Q 021903 215 PIFLTLLLLFI-SGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 260 (306)
Q Consensus 215 ~l~~~~ll~~~-s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~~ 260 (306)
++..+++.++ .+|+.||+.+.+-|| ++|.||+|+|+.=||+.+
T Consensus 158 -~f~~V~w~ff~~Ri~~EE~~Li~fFg--~~Y~eY~kkV~sGiPfi~ 201 (201)
T KOG2628|consen 158 -AFLLVVWRFFADRIKEEEKYLISFFG--SSYVEYAKKVPSGIPFIK 201 (201)
T ss_pred -HHHHHHHHHHhhhhhHHHHHHHHHhh--HHHHHHHHhCCcCCCCCC
Confidence 2233344444 456777888999999 999999999998799864
No 9
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.40 E-value=1.5e-12 Score=102.84 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC---CCCCCcccccCccccccCcchHHHHHHHHHHHHHh
Q 021903 143 IMWSVGVSIEAIADQQKLSFKNS---PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (306)
Q Consensus 143 ~l~~~G~~le~~Ad~ql~~f~~~---~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~ 200 (306)
+++++|..+..+|..++.++-+. ..++++++|+|+|+++|||||+|.++..+|.....
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll 63 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLL 63 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHH
Confidence 45788999999999999654332 24567899999999999999999766666655443
No 10
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.39 E-value=1.9e-12 Score=116.36 Aligned_cols=110 Identities=24% Similarity=0.362 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 021903 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (306)
Q Consensus 136 ~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~ 215 (306)
+...+|..+++.|++++..+|..+.+.|++.+++-|+.+.|+|.|+-+|||+||++.|+|+++++.+ +.++..+
T Consensus 147 ~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws------~p~~aFa 220 (257)
T KOG1638|consen 147 IRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWS------LPALAFA 220 (257)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhh------HHHHHHH
Confidence 4678999999999999999999999999876777799999999999999999999999999998754 2222333
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 021903 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 216 l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
++. +.+..+.....+ +-|- +.++||.|..+.+||++
T Consensus 221 ~ft---~~~l~pRA~ahH---~WY~--~kFe~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 221 FFT---ICNLGPRAYAHH---KWYL--KKFEDYPKNRKALIPFV 256 (257)
T ss_pred HHH---HHHhhHHHHHHH---HHHH--HhhccCCccceeecccc
Confidence 332 223322222222 3442 56789999999999985
No 11
>PLN02392 probable steroid reductase DET2
Probab=99.31 E-value=1.2e-11 Score=114.14 Aligned_cols=110 Identities=24% Similarity=0.281 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 021903 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (306)
Q Consensus 136 ~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~ 215 (306)
+..++|++++++|..++..+|.++.+.|++. ++.++.+.|+|+++.+|||+||++.|.|+++++.+ +.+.+..
T Consensus 150 ~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s------~~~~~F~ 222 (260)
T PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWS------WAGFGFF 222 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 4568999999999999999999999999753 56689999999999999999999999999998632 2122222
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 021903 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 216 l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
+....-+ .. ......+...|||| + +|.|+.+++||++
T Consensus 223 ~~~~~nl-~~-rA~~~hkwY~~kFg--~---~ypk~RkaiIPfi 259 (260)
T PLN02392 223 LYTCSNL-VP-RACANHKWYLEKFG--E---DYPKGRKAVIPFL 259 (260)
T ss_pred HHHHHHH-HH-HHHHHHHHHHHHcc--c---cccCCCeEecCcc
Confidence 2211111 11 11222333556665 3 6778889999985
No 12
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.24 E-value=3.8e-11 Score=102.55 Aligned_cols=110 Identities=18% Similarity=0.333 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 021903 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (306)
Q Consensus 136 ~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~ 215 (306)
+..++|++++++|......+|.++.+.|++.+++.++.+.|+|+++.+|||++|++.|+|+++++.+. .+.+..
T Consensus 40 ~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~~------~~~~f~ 113 (150)
T PF02544_consen 40 PRFIIGLALFLIGSIGNFYSHLILANLRKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGSW------PSYAFA 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhhh------hhHHHH
Confidence 56789999999999999999999998887666667899999999999999999999999999886421 111111
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 021903 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 216 l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
++... ..+ ....++ .+.|- +.+++|.++.+++||++
T Consensus 114 ~~~~~---~l~-~~A~~~--h~wY~--~~F~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 114 LFVVV---NLS-PRAVQT--HRWYK--KKFKEYPKNRKALIPFI 149 (150)
T ss_pred HHHHH---HHH-HHHHHH--HHHHH--HHCccccCCCeEecCcc
Confidence 12111 111 111222 13442 56789999999999986
No 13
>PLN02560 enoyl-CoA reductase
Probab=99.08 E-value=8.4e-10 Score=104.63 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 021903 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNS-PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (306)
Q Consensus 136 ~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~-~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~ 214 (306)
...++|++++++|...+..+|..+.+.|++ ...+.++...|+|+++-+|||++|++.|+|+++++.+ +.+++.
T Consensus 192 ~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~------~~~~~F 265 (308)
T PLN02560 192 TQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQT------VAGYLF 265 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHcc------HHHHHH
Confidence 345899999999999999999999999975 4445679999999999999999999999999998743 112222
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCccccc
Q 021903 215 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPL 258 (306)
Q Consensus 215 ~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~ 258 (306)
.++.+.-+. ......++...++|+|.++.++|.+|...++|+
T Consensus 266 ~~~~~~~m~--~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~ 307 (308)
T PLN02560 266 LAVAAAIMT--NWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 307 (308)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhccCccccccCCCceEeCCCc
Confidence 212111111 112234555677786322345688766666665
No 14
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=99.02 E-value=1.7e-09 Score=102.18 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHH
Q 021903 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVI 212 (306)
Q Consensus 135 ~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~--~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~ 212 (306)
++.+++|++++++|...+..++..+.+.|+++ +++.++.+.|+|+++-.|||++|++.|+|+++++.+. ...++.+
T Consensus 208 ~~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~--~~~~~l~ 285 (323)
T PLN03164 208 GWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGT--DLTIWLL 285 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCc--hHHHHHH
Confidence 34578999999999999999999999998532 3356799999999999999999999999999886421 1111111
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 021903 213 LGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 213 ~~~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
+ +++..-+. ..-.|.+ +.|- ++++||.|+.+++||++
T Consensus 286 ~--~~v~~nL~----~~A~~tH--kWY~--kkF~dYPk~RkAIIPfI 322 (323)
T PLN03164 286 F--GFVVANLT----FAAAETH--RWYL--QKFENYPRNRYAIIPFV 322 (323)
T ss_pred H--HHHHHHHH----HHHHHHH--HHHH--HhccccccCceEecCcc
Confidence 1 11111111 1122222 3442 45567999889999985
No 15
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=7.4e-09 Score=88.44 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccccCccccccCcchHH-HHHHHHHHHHHhcCccCchh
Q 021903 133 SVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP---ENRGKWCNVGFWKYSRHPNYFG-EIFLWWGIFVASTPVLDGAE 208 (306)
Q Consensus 133 ~l~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~---~~~g~lvt~Gly~~sRHPnY~G-e~l~w~G~~l~~~~~~~g~~ 208 (306)
.+++..++|++++++...+..++..++.++-+.+ -++++++++|+||+.|||||+- -+.--+|+.+.+- .
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~------A 139 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQ------A 139 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHH------H
Confidence 4566778899999999999999999998876653 3678899999999999999999 5666778888752 2
Q ss_pred HHH--HHHHHHHHHHHHHHhCchHHHHHHHH
Q 021903 209 WLV--ILGPIFLTLLLLFISGIPLLEESADK 237 (306)
Q Consensus 209 ~~~--~~~~l~~~~ll~~~s~i~~~E~~l~~ 237 (306)
|.+ +.+|+. .+++++ +++-||+.+.+
T Consensus 140 ~~Ta~l~~p~y--a~~L~v-RIr~EekaL~~ 167 (172)
T COG1755 140 WYTALLFSPIY--ALLLYV-RIRQEEKALAE 167 (172)
T ss_pred HHHHHHHHHHH--HHHHhh-hhhHHHHHHHH
Confidence 332 344543 333443 35666665544
No 16
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=97.87 E-value=0.00046 Score=64.30 Aligned_cols=109 Identities=17% Similarity=0.341 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 021903 137 VDVIGWIMWSVGVSIEAIADQQKLSFKNSPE--NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (306)
Q Consensus 137 ~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~--~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~ 214 (306)
.+++|.+++..|..=+..+..++.+-|++|. .+..+++.|.++++-.|||++|+++..|++..... ..++.+++
T Consensus 193 ~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~----~~iwLv~~ 268 (304)
T KOG1640|consen 193 LQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPD----LTIWLVFG 268 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCc----hHHHHHHH
Confidence 6788999999988888888888888777654 34568999999999999999999999997654322 12222222
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 021903 215 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 215 ~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
-+. ...+ ....|.+ +-| .+.+++|.+....+||+.
T Consensus 269 ~V~-----~N~t-~aA~~Th--~wY--~~kF~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 269 WVA-----ANLT-YAALETH--RWY--LKKFENYPKNRHAIIPFL 303 (304)
T ss_pred HHH-----HHHH-HHHHHHH--HHH--HHhhccCccccccccccc
Confidence 211 1111 1223322 233 256789999999999985
No 17
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.45 E-value=0.00036 Score=63.72 Aligned_cols=106 Identities=14% Similarity=0.228 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc-cccC-ccccccCcchHHHHHHHHHHHHHhcCccCchhHH-HHHHH
Q 021903 139 VIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKW-CNVG-FWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL-VILGP 215 (306)
Q Consensus 139 ~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~g~l-vt~G-ly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~-~~~~~ 215 (306)
.+|++.+++.-+.+..+..-+++.|....++.++ +.+| ++.++-+|||+-|+..|+|+.+++-+. + .++ +.++.
T Consensus 189 ~~~l~~fv~~el~NF~~HI~LR~lrp~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~l-~--a~lFl~vg~ 265 (297)
T KOG1639|consen 189 KLGLGGFVLCELGNFSCHILLRNLRPAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMTQCL-A--AYLFLTVGA 265 (297)
T ss_pred hhhhHHHhhhhhcceeeEeehhhccCCcCccceeecCCccEEEEEecCCcceehHHHHHHHHHHHHH-H--HHHHHHHHH
Confidence 4555555555444444444445555332223333 3456 899999999999999999999886321 0 010 11111
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 021903 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 216 l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
.-|+ +...-+ .++|- +++.+|.++...+||+.
T Consensus 266 aqMt--------iWA~~K--h~~yl--KeFp~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 266 AQMT--------IWAKGK--HRRYL--KEFPDYPRRRKIIIPFV 297 (297)
T ss_pred HHHH--------HHHHhh--hHhHh--hhcccCCccccccCCCC
Confidence 1111 111111 23453 78889999999999873
No 18
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=97.01 E-value=0.0021 Score=57.24 Aligned_cols=95 Identities=20% Similarity=0.342 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 021903 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (306)
Q Consensus 135 ~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~ 214 (306)
.+...+...++.+++++-..+..+ .++-+ +++++|||++.|..+ |...=+.. +... ... .+.+
T Consensus 67 ~~~~~l~~~lm~~a~il~~~a~~~-----~~~~~--------i~r~~RHP~l~g~~l-WA~aHLl~-nGd~-~~~-lLFg 129 (191)
T PF07298_consen 67 PWLRHLANLLMLLAFILLVAALFP-----PNPFS--------IYRITRHPMLLGVLL-WALAHLLA-NGDL-ASL-LLFG 129 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcc-----CcchH--------HHHHhcCchHHHHHH-HHHHHhhh-cCcH-HHH-HHHH
Confidence 345566667777777776666432 11111 999999999999754 53221221 2111 112 2233
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCc
Q 021903 215 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSP 254 (306)
Q Consensus 215 ~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~ 254 (306)
.... ..+.++..+|++ .+ +| ++|++|+++|+.
T Consensus 130 ~~~~----~al~~~~~~~rr-~~-~g--~~~~~~~~~~s~ 161 (191)
T PF07298_consen 130 GFLA----WALIGIILIDRR-RR-FG--DAWRAYPRRTSI 161 (191)
T ss_pred HHHH----HHHHHHHHHHHh-hc-cc--cccccccCCCCC
Confidence 3222 222346778888 66 88 889999999874
No 19
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=88.26 E-value=1.3 Score=38.00 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CCCCcccccCccccccCcchHHHHHHHHHHHHHh
Q 021903 139 VIGWIMWSVGVSIEAIADQQKLSFKNSP-----ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (306)
Q Consensus 139 ~~G~~l~~~G~~le~~Ad~ql~~f~~~~-----~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~ 200 (306)
..|+.++.+|-++...+..++..-.+-- ... .-+|+=+|++.+||+|-|..+..+|.++.-
T Consensus 67 l~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 67 LYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHh
Confidence 5788999999999999988885422210 112 278999999999999999999999988764
No 20
>COG4094 Predicted membrane protein [Function unknown]
Probab=82.78 E-value=0.99 Score=40.35 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=44.9
Q ss_pred ccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhh
Q 021903 172 WCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKT 251 (306)
Q Consensus 172 lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~kr 251 (306)
+-.+++=+.+|||.-.|..+ |. ++=...+... .+. .+.+. +++..+.+++..|++..+||| ++++.=+++
T Consensus 98 ~~~g~Ii~itRHP~l~g~~i-Wa-laHll~nGd~-~Sv-llfgg----f~l~~~~~~~~~~rR~r~r~g--~a~~~~~~~ 167 (219)
T COG4094 98 LYEGRIIRITRHPQLLGVVI-WA-LAHLLANGDT-FSV-LLFGG----FLLWAVVGVWSGDRRARKRYG--EAFVAPVQV 167 (219)
T ss_pred ccCCceEEEecCchhHHHHH-HH-HHHhhccCce-eeH-HHHHH----HHHHHHHHhhhhhhhhhcccC--cceeeeecc
Confidence 44567778999999999744 32 2211112111 111 11121 122233357888999999999 888888887
Q ss_pred CCccccc
Q 021903 252 TSPLIPL 258 (306)
Q Consensus 252 t~~~iP~ 258 (306)
|++ +|+
T Consensus 168 ts~-~pf 173 (219)
T COG4094 168 TSR-IPF 173 (219)
T ss_pred ccc-cch
Confidence 765 465
No 21
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=64.44 E-value=44 Score=29.21 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCC--CCCCcccccCccccccCcchHHHHHHHHHHHHHh
Q 021903 137 VDVIGWIMWSVGVSIEAIADQQKLS---FKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (306)
Q Consensus 137 ~~~~G~~l~~~G~~le~~Ad~ql~~---f~~~~--~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~ 200 (306)
..-+|.+++.+|.++-..+...+.- |-.+- --+.+=+|.=+|...-||+|-|.-+...|+++.-
T Consensus 97 ~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~ 165 (208)
T KOG4142|consen 97 AYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMH 165 (208)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHc
Confidence 4457888888888877766665531 21110 0122356778899999999999999999999975
No 22
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.85 E-value=1.2e+02 Score=28.86 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=15.0
Q ss_pred hHHHHHh----hhhHHHHHHHHHHHHHH
Q 021903 94 FDEMRSN----LGKLAIFWIFQAVWVWT 117 (306)
Q Consensus 94 y~~~r~~----~~~~~~~~~~Q~~lv~l 117 (306)
|+.+|.. ++.||++|++|.+...+
T Consensus 188 YkAFRsDSSf~F~~FFF~y~~q~~~~v~ 215 (313)
T KOG3088|consen 188 YKAFRTDSSFNFGAFFFTYFFQIVFCVF 215 (313)
T ss_pred HHHhccccchhhHHHHHHHHHHHHHHHH
Confidence 7777763 44566667777666544
No 23
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=47.31 E-value=2e+02 Score=25.44 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=20.6
Q ss_pred HHHHHHHHHhccceEeeeccccHHHHHHHHHHHHh
Q 021903 22 LLFFVITALFKFDKVTDFAGSTNFIIIALLTLILK 56 (306)
Q Consensus 22 ~~~~~~s~~~~~~~~~D~~w~~~~~~~a~~~~~~~ 56 (306)
.+...+-...|++++-....|+.-+.++....+.+
T Consensus 38 a~~~~v~RL~r~~~~~~a~~gl~gV~i~a~~A~~t 72 (187)
T PF11361_consen 38 AVVIVVWRLVRRESVQPALSGLFGVAISAAIAWRT 72 (187)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778788877666665555554444443
No 24
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=45.94 E-value=51 Score=23.86 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=37.9
Q ss_pred CcCchhhHHHHHHHHHHHHHHHHHHHHHhccceEeeeccccHHHHHHHHHHHHhCC
Q 021903 3 TVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGS 58 (306)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~D~~w~~~~~~~a~~~~~~~~~ 58 (306)
+|+..+-|..++++.-+++++.+.+|....+-++= +|.--++.+++.++.++.
T Consensus 6 ~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~Grih---GSAIAI~lGLvLAy~GG~ 58 (60)
T PF03818_consen 6 KVLTKNGLITAFAVVGIIMWVSYWLSKKLTRGRIH---GSAIAIVLGLVLAYIGGV 58 (60)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHccc
Confidence 46678888899999999999999999777666654 444445555555555543
No 25
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=33.56 E-value=31 Score=28.00 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=16.7
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 021903 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (306)
Q Consensus 235 l~~kyG~~~~Y~~Y~krt~~~iP~ 258 (306)
+.++| +.|.+|+++|.|=||-
T Consensus 89 ~~~~~---p~~~~yq~~t~R~ipv 109 (113)
T TIGR00026 89 VVRLY---PRYGRYQSRTDRPIPV 109 (113)
T ss_pred HHHHC---cCHHHHHhhCCCcccE
Confidence 34566 7899999999987874
No 26
>COG3462 Predicted membrane protein [Function unknown]
Probab=33.30 E-value=1.4e+02 Score=24.26 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.3
Q ss_pred hHHHHHHHHHcC
Q 021903 229 PLLEESADKKFG 240 (306)
Q Consensus 229 ~~~E~~l~~kyG 240 (306)
-..|+.+++||-
T Consensus 88 sRA~eIlkER~A 99 (117)
T COG3462 88 SRAEEILKERYA 99 (117)
T ss_pred cHHHHHHHHHHh
Confidence 345677888884
No 27
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=32.72 E-value=84 Score=30.35 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCC--C----CCcHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCCC----C
Q 021903 108 WIFQAVWVWTVSLPVTVVNASDRD--P----SVQAVDVIGWIMWSVGVSIEAIADQQK-----------LSFKNS----P 166 (306)
Q Consensus 108 ~~~Q~~lv~l~~lPv~~~~~~~~~--~----~l~~~~~~G~~l~~~G~~le~~Ad~ql-----------~~f~~~----~ 166 (306)
=+++++.-.+..+|+....++.-+ | --....+++++..+.|..+-......+ ..+|++ .
T Consensus 207 sfi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~NQrvEAAyRKELVYgE 286 (405)
T COG1133 207 SFINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGE 286 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccccHHHHHHHHhhhhccC
Confidence 346777777777898876543211 1 112345666666666665544443322 123321 1
Q ss_pred C--CC-CcccccCccccccCcchHHHHHH
Q 021903 167 E--NR-GKWCNVGFWKYSRHPNYFGEIFL 192 (306)
Q Consensus 167 ~--~~-g~lvt~Gly~~sRHPnY~Ge~l~ 192 (306)
+ ++ ...-..-+|+=+|| ||+-....
T Consensus 287 Dh~drA~p~T~~ELf~nvr~-NYfRLyfH 314 (405)
T COG1133 287 DHADRATPPTVRELFSNVRK-NYFRLYFH 314 (405)
T ss_pred CchhhcCCchHHHHHHHHHH-HHHHHHHH
Confidence 1 11 12334568888888 77765443
No 28
>PF15113 TMEM117: TMEM117 protein family
Probab=28.92 E-value=99 Score=30.34 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=48.8
Q ss_pred ccceEeeeccccHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHhhHHHHHhhhCcCcchhhHHHHHhhhhHHHHHHH
Q 021903 32 KFDKVTDFAGSTNFIIIALLTLIL-KGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIF 110 (306)
Q Consensus 32 ~~~~~~D~~w~~~~~~~a~~~~~~-~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~~~~~~~~~ 110 (306)
++|+.+++.|-.--.++ .-+- ++++..-+.++-++.+++|++.+.|++.|.+ -|.+-|-+.+|++.|++...|+.
T Consensus 38 ~tEa~v~vvGn~fsF~~---~kyP~~~gw~~LKv~lwllai~~GL~~GKfl~H~~L-fg~~~rlkmf~ed~Gswm~mF~s 113 (415)
T PF15113_consen 38 QTEANVIVVGNCFSFVC---NKYPPGGGWRALKVLLWLLAIFTGLIAGKFLFHQRL-FGQLLRLKMFREDHGSWMTMFLS 113 (415)
T ss_pred ccceeEEEEccEEEEEE---ecCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHhhhhhcccCCceehHHHH
Confidence 55667777663311000 0011 2344445666777899999999999997744 25567778888887776555544
Q ss_pred HHHHHH
Q 021903 111 QAVWVW 116 (306)
Q Consensus 111 Q~~lv~ 116 (306)
-.+..+
T Consensus 114 til~lF 119 (415)
T PF15113_consen 114 TILFLF 119 (415)
T ss_pred HHHHHH
Confidence 433333
No 29
>COG3162 Predicted membrane protein [Function unknown]
Probab=26.42 E-value=3.4e+02 Score=21.74 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=32.2
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhC-----CCCC-CCcHHHHHHHHHHHHHHHHHHH
Q 021903 91 DRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNAS-----DRDP-SVQAVDVIGWIMWSVGVSIEAI 154 (306)
Q Consensus 91 D~Ry~~~r~~~~~~~~~~~~Q~~lv~l~~lPv~~~~~~-----~~~~-~l~~~~~~G~~l~~~G~~le~~ 154 (306)
.+||.+++++..+|...- --..+++.+++|++..... +..+ +.++-..+|+..++.++++..+
T Consensus 12 ~p~f~eLv~kr~~Fa~~l-tl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~I 80 (102)
T COG3162 12 NPRFRELVRKRRRFAVPL-TLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGI 80 (102)
T ss_pred CHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHH
Confidence 378999988766543211 1122334444555443221 1111 2444456677777777766544
No 30
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=23.32 E-value=70 Score=26.57 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.1
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 021903 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (306)
Q Consensus 235 l~~kyG~~~~Y~~Y~krt~~~iP~ 258 (306)
+.++| +.|++|+++|.+=||-
T Consensus 107 ~~~~~---p~~~~y~~~t~R~ipv 127 (132)
T PF04075_consen 107 LVAAY---PGYADYQARTGRRIPV 127 (132)
T ss_dssp HHHHS---THHHHHHHHCSSTS-E
T ss_pred HHHHC---cChHHhcccCCCEeeE
Confidence 34567 7899999999988873
No 31
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=22.91 E-value=1.7e+02 Score=28.52 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=35.8
Q ss_pred cccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhC-Cccccc
Q 021903 180 YSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT-SPLIPL 258 (306)
Q Consensus 180 ~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~~~~~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt-~~~iP~ 258 (306)
+.|++.|+|-.+--.+++.......++ .|...+..++...+..+. + . +-|++|++++ ..+.|.
T Consensus 275 flR~~ey~gl~lRL~~i~~l~i~~~~~-~wl~~iv~~l~~yl~~~Q---------L--~----~l~~~~~~~~~~~lyP~ 338 (386)
T PF05975_consen 275 FLRSGEYLGLYLRLTLIGALLIFFLPG-SWLSLIVGLLFLYLTGFQ---------L--L----PLWRHFDYSPWTHLYPI 338 (386)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH---------H--H----HHHHHHHhCcchhhCCC
Confidence 579999999988777666554332232 344333222211111111 1 1 5677777776 466676
Q ss_pred CCCC
Q 021903 259 PPVV 262 (306)
Q Consensus 259 ~~~~ 262 (306)
.++.
T Consensus 339 ~~~~ 342 (386)
T PF05975_consen 339 SEKQ 342 (386)
T ss_pred ChhH
Confidence 5553
Done!