Query 021903
Match_columns 306
No_of_seqs 308 out of 1551
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 5E-25 1.7E-29 194.4 19.1 115 135-259 75-193 (194)
2 3r5y_A Putative uncharacterize 63.1 4 0.00014 33.6 2.6 22 235-259 121-142 (147)
3 3r5z_A Putative uncharacterize 56.3 6.2 0.00021 32.4 2.6 22 235-259 119-140 (145)
4 3h96_A F420-H2 dependent reduc 55.7 6.4 0.00022 32.2 2.6 22 235-259 115-138 (143)
5 3r5l_A Deazaflavin-dependent n 52.9 2.1 7.2E-05 34.2 -0.8 21 235-258 97-117 (122)
6 2laq_A Accessory gland-specifi 29.3 30 0.001 21.2 1.9 18 281-298 13-30 (36)
7 2jz3_A Suppressor of cytokine 11.7 1.2E+02 0.0039 19.0 1.8 15 265-279 24-38 (40)
8 1vk5_A Expressed protein; stru 10.7 1.1E+02 0.0037 24.8 1.7 19 232-253 35-53 (157)
9 2l9u_A Receptor tyrosine-prote 8.7 2.9E+02 0.0099 17.0 2.7 23 65-87 12-34 (40)
10 3rco_A Tudor domain-containing 8.1 1.8E+02 0.0061 21.6 1.9 34 245-282 35-68 (89)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.93 E-value=5e-25 Score=194.37 Aligned_cols=115 Identities=19% Similarity=0.309 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHH
Q 021903 135 QAVDVIGWIMWSVGVSIEAIADQQKLS-FKN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 211 (306)
Q Consensus 135 ~~~~~~G~~l~~~G~~le~~Ad~ql~~-f~~--~~~~~g~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~~~~ 211 (306)
.+..++|++++++|+.++.+|+.|+.+ |+. +++++++++|+|+|+++|||||+|+++.|+|+++...+ +++
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~~ 148 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WVV 148 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HHH
Confidence 567899999999999999999999854 453 34577899999999999999999999999999987532 223
Q ss_pred HH-HHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 021903 212 IL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 212 ~~-~~l~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
++ .+++++++ +..+++.||+.+.++|| ++|++||++||++||++
T Consensus 149 ~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 149 LIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence 33 33332222 23467899999999999 99999999999999985
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=63.11 E-value=4 Score=33.64 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=18.0
Q ss_pred HHHHcCCchHHHHHHhhCCcccccC
Q 021903 235 ADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 235 l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
+.++| |.|.+|+++|.|-||-+
T Consensus 121 ~~~~~---P~y~~Yq~~t~R~IPv~ 142 (147)
T 3r5y_A 121 AVRAY---PTYQEYQDNTRRLIPVL 142 (147)
T ss_dssp HHHHC---THHHHHHHTCSSCCCEE
T ss_pred HHHHC---CCHHHHHhhcCCcCcEE
Confidence 44667 79999999999988853
No 3
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=56.32 E-value=6.2 Score=32.38 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=17.8
Q ss_pred HHHHcCCchHHHHHHhhCCcccccC
Q 021903 235 ADKKFGNMPAYRLYKKTTSPLIPLP 259 (306)
Q Consensus 235 l~~kyG~~~~Y~~Y~krt~~~iP~~ 259 (306)
+.++| |.|.+|+++|.|-||-+
T Consensus 119 ~~~~~---p~y~~Yq~~t~R~iPv~ 140 (145)
T 3r5z_A 119 AVEVW---PDYAEYQTKTTREIPVF 140 (145)
T ss_dssp HHHHC---THHHHHGGGCSSCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCcCceE
Confidence 44567 89999999999988853
No 4
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=55.71 E-value=6.4 Score=32.18 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=17.7
Q ss_pred HHHHcCCchHHHHHHhhCC--cccccC
Q 021903 235 ADKKFGNMPAYRLYKKTTS--PLIPLP 259 (306)
Q Consensus 235 l~~kyG~~~~Y~~Y~krt~--~~iP~~ 259 (306)
+.++| |.|.+|+++|. |-||-+
T Consensus 115 ~~~~~---P~y~~Yq~~t~~~R~iPv~ 138 (143)
T 3h96_A 115 QARRY---PGFADYEKKTAGIRTIPVL 138 (143)
T ss_dssp HHHHC---THHHHHHHHTTTTCCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCCCcccEE
Confidence 44567 78999999998 988843
No 5
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=52.87 E-value=2.1 Score=34.16 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=17.8
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 021903 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (306)
Q Consensus 235 l~~kyG~~~~Y~~Y~krt~~~iP~ 258 (306)
+.++| |.|.+|+++|.|-||-
T Consensus 97 ~~~~~---p~y~~yq~~t~R~ipv 117 (122)
T 3r5l_A 97 LVTMY---PSYQDYQSWTDRTIPI 117 (122)
T ss_dssp HHHHC---TTCCCTTGGGCTTSCE
T ss_pred HHHHC---cCHHHHHhhcCCcccE
Confidence 45678 7899999999998884
No 6
>2laq_A Accessory gland-specific peptide 70A; hydroxiproline rich, signaling protein; HET: HYP; NMR {Drosophila melanogaster}
Probab=29.32 E-value=30 Score=21.16 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=13.4
Q ss_pred ccCCCCCCCCccccCccc
Q 021903 281 SRNFPQEGPNWCRTNHRE 298 (306)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~ 298 (306)
....+++++.|||.|-..
T Consensus 13 ~ip~p~~r~KWCRLNlGP 30 (36)
T 2laq_A 13 PIPSPNPRDKWCRLNLGP 30 (36)
T ss_dssp SSSSCSTTSSCCSSCCCT
T ss_pred cCCCCcchhhhheecccc
Confidence 345678999999988543
No 7
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=11.66 E-value=1.2e+02 Score=19.03 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=12.9
Q ss_pred CChHHHHHHhHhccc
Q 021903 265 NLPWWLKTILFELPL 279 (306)
Q Consensus 265 ~~~~~~k~~~~~~p~ 279 (306)
++|..+|+++.++|+
T Consensus 24 pLP~~Lk~yL~ey~y 38 (40)
T 2jz3_A 24 QLPGPIREFLDQYDA 38 (40)
T ss_pred CCCHHHHHHHHHCCC
Confidence 688999999998875
No 8
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=10.67 E-value=1.1e+02 Score=24.77 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=13.4
Q ss_pred HHHHHHHcCCchHHHHHHhhCC
Q 021903 232 EESADKKFGNMPAYRLYKKTTS 253 (306)
Q Consensus 232 E~~l~~kyG~~~~Y~~Y~krt~ 253 (306)
|..+.+|= +.|++|+|+.|
T Consensus 35 e~~liRrA---EmYQ~YMK~iP 53 (157)
T 1vk5_A 35 EGSLLRRA---EMYQDYMKQVP 53 (157)
T ss_dssp -CTTHHHH---HHHHHHHHTSC
T ss_pred chhhhhHH---HHHHHHHHhCC
Confidence 44455553 89999999976
No 9
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.73 E-value=2.9e+02 Score=16.96 Aligned_cols=23 Identities=26% Similarity=0.233 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhC
Q 021903 65 VLTFLAVVWGLRLALFLLMRILN 87 (306)
Q Consensus 65 l~~~~v~~W~~RL~~~l~~R~~~ 87 (306)
++.+++++.-.==+.|++||..+
T Consensus 12 ~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcccc
Confidence 34445555544445788988654
No 10
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=8.14 E-value=1.8e+02 Score=21.61 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=26.7
Q ss_pred HHHHHhhCCcccccCCCCCCCChHHHHHHhHhcccccc
Q 021903 245 YRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSR 282 (306)
Q Consensus 245 Y~~Y~krt~~~iP~~~~~~~~~~~~~k~~~~~~p~~~~ 282 (306)
-+||++-++.-||+-.-.|+++.++++ +-|-.-.
T Consensus 35 ~~DYr~l~G~~iP~r~lGy~sl~~fL~----siPdvv~ 68 (89)
T 3rco_A 35 QGEYRSLTGDWIPFKQLGFPTLEAYLR----SVPAVVR 68 (89)
T ss_dssp HHHHHHHHSSCCCTTTTTCSSHHHHHH----TCTTTEE
T ss_pred HHHHHHHhCCcCChhhhCcccHHHHHh----cccCeEE
Confidence 479999999999998888888888777 5555433
Done!